Query 025029
Match_columns 259
No_of_seqs 165 out of 638
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1647 Vacuolar H+-ATPase V1 100.0 6.7E-66 1.4E-70 445.2 24.9 254 1-259 1-255 (255)
2 TIGR00309 V_ATPase_subD H(+)-t 100.0 6.5E-59 1.4E-63 408.1 25.5 205 7-211 2-207 (209)
3 PRK00373 V-type ATP synthase s 100.0 3.5E-58 7.5E-63 402.1 25.5 202 5-208 2-204 (204)
4 COG1394 NtpD Archaeal/vacuolar 100.0 6.7E-58 1.5E-62 399.5 25.4 207 5-213 1-207 (211)
5 PRK02195 V-type ATP synthase s 100.0 1.9E-55 4.1E-60 384.1 25.1 197 6-212 2-198 (201)
6 PF01813 ATP-synt_D: ATP synth 100.0 1.2E-54 2.6E-59 377.3 20.0 195 14-209 1-196 (196)
7 cd02682 MIT_AAA_Arch MIT: doma 72.8 16 0.00035 27.2 6.2 51 129-180 19-72 (75)
8 PF13851 GAS: Growth-arrest sp 54.0 1.1E+02 0.0024 26.7 8.9 54 13-66 85-138 (201)
9 PF03670 UPF0184: Uncharacteri 45.1 1.3E+02 0.0029 22.8 6.9 54 12-65 24-77 (83)
10 PF11285 DUF3086: Protein of u 40.8 58 0.0013 30.0 5.1 48 26-73 2-49 (283)
11 PF05055 DUF677: Protein of un 38.6 2E+02 0.0043 27.3 8.6 67 128-198 223-290 (336)
12 PF08349 DUF1722: Protein of u 38.2 33 0.00071 27.2 2.9 43 154-204 36-78 (117)
13 PF08858 IDEAL: IDEAL domain; 31.4 52 0.0011 21.0 2.4 22 183-204 13-34 (37)
14 PF10157 DUF2365: Uncharacteri 28.5 2.4E+02 0.0052 23.7 6.6 48 129-176 101-148 (149)
15 KOG1962 B-cell receptor-associ 27.3 2.1E+02 0.0046 25.6 6.4 39 14-52 158-196 (216)
16 PRK11637 AmiB activator; Provi 27.1 5.7E+02 0.012 24.6 16.5 32 177-208 220-251 (428)
17 PF05659 RPW8: Arabidopsis bro 26.8 2.3E+02 0.0051 23.5 6.3 64 138-209 14-77 (147)
18 PRK14127 cell division protein 26.4 3.3E+02 0.0072 21.7 7.1 53 121-176 21-73 (109)
19 PRK14011 prefoldin subunit alp 24.8 4.1E+02 0.0088 22.1 11.0 47 130-182 84-130 (144)
20 PF04212 MIT: MIT (microtubule 22.4 2.8E+02 0.006 19.3 5.4 45 131-175 20-67 (69)
21 PF03980 Nnf1: Nnf1 ; InterPr 21.2 3.9E+02 0.0084 20.5 8.8 68 132-200 12-82 (109)
22 PF06334 Orthopox_A47: Orthopo 21.0 5.7E+02 0.012 22.4 13.3 58 8-65 5-76 (244)
No 1
>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]
Probab=100.00 E-value=6.7e-66 Score=445.20 Aligned_cols=254 Identities=58% Similarity=0.861 Sum_probs=225.1
Q ss_pred CcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcch
Q 025029 1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENI 80 (259)
Q Consensus 1 m~~~~~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~ 80 (259)
||+++|++|+||||+|..||.|+++|++||.|||+|+|||.++||.+++.+.+.+..|++.|++|.|||++|.|.+|+ |
T Consensus 1 Msg~dr~~vFPtRm~~~~MKtrlkgAq~GhsLLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn-~ 79 (255)
T KOG1647|consen 1 MSGKDRLPVFPTRMNLTLMKTRLKGAQKGHSLLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGN-F 79 (255)
T ss_pred CCccccccccchHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-c
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999885 9
Q ss_pred HHHHHhhcccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 81 KHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLD 160 (259)
Q Consensus 81 ~~~v~~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~ 160 (259)
...+.+++..+.++|+.+.+||+||.+|+|+....+...++..||+.||+++.+|++.|.+++++|++||++|++|..|+
T Consensus 80 ~~~v~q~v~~a~v~vRsk~env~GV~Lp~fe~~~dg~~~~~LtgL~rgGqqv~~~r~~Y~kAve~LVelasLqtsf~~Ld 159 (255)
T KOG1647|consen 80 KHQVQQNVKQATVKVRSKKENVSGVKLPTFELYQDGIDAFPLTGLGRGGQQVARLRENYTKAVELLVELASLQTSFRTLD 159 (255)
T ss_pred cHHHHhhhhhheeeeeeeccccceeeechhhhhcccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999889999999999999999999999887666668999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHhhhhccc
Q 025029 161 EAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240 (259)
Q Consensus 161 ~eIkkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (259)
+.|+.||||||||||||||++++||.||.++|||.|||||||||||+.+|....++..++.+. +...++...+.+..
T Consensus 160 e~ik~TNrRVNAiEhvIIPrlenTi~YI~sELdE~eRedF~RLKKiQ~~K~~~~ek~~a~k~~---e~~~~~~~~~~~~~ 236 (255)
T KOG1647|consen 160 EAIKVTNRRVNAIEHVIIPRLENTIAYIVSELDELEREDFYRLKKIQAKKREAKEKADAEKKL---EDEGLGIDVQRNIN 236 (255)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh---hccccchHHHhhcc
Confidence 999999999999999999999999999999999999999999999999998876666543221 11111122233333
Q ss_pred ccccccccccCC-CCCCCCC
Q 025029 241 IKSAQNLLSAGE-KDEDIIF 259 (259)
Q Consensus 241 ~~~~~~~~~~~~-~d~d~~f 259 (259)
. .++|++.++. .|+|++|
T Consensus 237 ~-~~an~~~~e~~~~~d~lf 255 (255)
T KOG1647|consen 237 V-PAANLLAGEEQMDDDVLF 255 (255)
T ss_pred c-cccccccccccccccccC
Confidence 3 3556665222 2899998
No 2
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=100.00 E-value=6.5e-59 Score=408.13 Aligned_cols=205 Identities=41% Similarity=0.547 Sum_probs=191.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHHh
Q 025029 7 LTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLE 86 (259)
Q Consensus 7 ~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~~ 86 (259)
.+|+||||+|+.+|++|++|++||+||++|||+|+++|++++.++.+++..+++.+.+||+++..|.+..|+.....++.
T Consensus 2 ~~v~PTr~~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~ 81 (209)
T TIGR00309 2 EKVNPTRMELLKLKDKLKMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAAL 81 (209)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999855566777
Q ss_pred hcccCceEEEeeeeeeeeeeeceeeeeecCC-CCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 87 NVQNASIKVRSRQENIAGVKIPKFEYFTDGE-TKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKT 165 (259)
Q Consensus 87 ~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~-~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkk 165 (259)
+++.+..+|.++.+|||||++|.|+..+... .+.++||+++||+|+|+|+..|.++++.++++|++|++|++|+.||++
T Consensus 82 ~v~~~~~~v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~l~~t~~~~d~a~~~~~~~l~~li~lA~~e~~~~~L~~eI~~ 161 (209)
T TIGR00309 82 SVVTARFEVDMKSKNIMGVVVPVFDSYEIRRKVHERGYGLLFTSYKVDEAAEIYEEAVELIVELAEIETTIRLLAEEIEI 161 (209)
T ss_pred cCCcccceEEEEEEEEeeEEcceeEeeccccCccccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765788999999999999999999964322 234779999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhH
Q 025029 166 TNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKK 211 (259)
Q Consensus 166 T~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~ 211 (259)
|+|||||||||+||++++||+||.++|||+|||+|||+|++|++++
T Consensus 162 T~RRVNALE~vvIP~l~~~ik~I~~~LeE~EREef~RlK~vK~k~~ 207 (209)
T TIGR00309 162 TKRRVNALEHVIIPRLKNTIKYINMRLDEMDRENFVRLKKIKSSKE 207 (209)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998875
No 3
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=100.00 E-value=3.5e-58 Score=402.13 Aligned_cols=202 Identities=36% Similarity=0.501 Sum_probs=187.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHH
Q 025029 5 QRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIV 84 (259)
Q Consensus 5 ~~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v 84 (259)
++.+|+||||+|+.+|++|++|++||+|||+|||+|+++|+++++++.++++.+++.+++||++|+.|.+..|+.+...+
T Consensus 2 ~~~~v~pTr~~L~~lk~~l~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~~ 81 (204)
T PRK00373 2 ARLNVKPTRMELINLKRRLKLAERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEEA 81 (204)
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999998665666
Q ss_pred HhhcccCceEEEeeeeeeeeeeeceeeee-ecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 85 LENVQNASIKVRSRQENIAGVKIPKFEYF-TDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAI 163 (259)
Q Consensus 85 ~~~v~~~~~~v~~~~~nImGV~vP~~~~~-~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eI 163 (259)
..+ ..+..+|.++.+|||||++|.|+.. ... ....+||+++||+|+|+|+..|.++++.++++|++|++|++|+.||
T Consensus 82 ~~~-~~~~~~v~~~~~ni~GV~vP~~~~~~~~~-~~~~~y~~~~t~~~~d~a~~~~~~~l~~li~lA~~e~~~~~L~~ei 159 (204)
T PRK00373 82 AAS-PKESLEVDVSSKNIMGVVVPVIELSVKRT-LPERGYGFLGTSAELDEAAEKFEELLEKILELAEVEKTIQLLADEI 159 (204)
T ss_pred HhC-CCCCceEEEEeEEEEEEEeceEEeecccC-CccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 3567889999999999999999983 221 1236799999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhh
Q 025029 164 KTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQG 208 (259)
Q Consensus 164 kkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~ 208 (259)
++|+|||||||||+||++++||+||.++|||+|||+|||+|++|+
T Consensus 160 ~kT~RRVNALE~vvIP~le~~ik~I~~~LeE~EReef~RlK~iK~ 204 (204)
T PRK00373 160 EKTKRRVNALEYVIIPRLEETIKYIKMKLDEMERENFVRLKKIKS 204 (204)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999984
No 4
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=100.00 E-value=6.7e-58 Score=399.47 Aligned_cols=207 Identities=38% Similarity=0.501 Sum_probs=191.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHH
Q 025029 5 QRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIV 84 (259)
Q Consensus 5 ~~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v 84 (259)
++.+|+||||+|+++|++|++|++||+|||+|||+|++||+++.+++.+++..+++.+.+||+++..|.+..|.+....+
T Consensus 1 m~~~v~PTR~eL~~lk~rLkla~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~~ 80 (211)
T COG1394 1 MSLQVKPTRMELIRLKRRLKLARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEEI 80 (211)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998666667
Q ss_pred HhhcccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 85 LENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIK 164 (259)
Q Consensus 85 ~~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIk 164 (259)
+...+ ..++|.+..+|||||.+|.|+.......++. .|+++||+|+|+|+..|.++++.++++|++|++|++|.+||+
T Consensus 81 ~~~~~-~~~~v~~~~~nI~GV~vP~~~~~~~~~~~~~-~~~~~t~~~ld~a~~~~~elle~li~lae~e~~~~~L~~Ei~ 158 (211)
T COG1394 81 ALVQK-EKLEVDVDVENIMGVVVPTFELVELTPPPYD-LGILSTSAWLDEAIEKFEELLEKLIELAELETTLRLLLEEIR 158 (211)
T ss_pred HhCCC-CCceeeeceeeeeeeeeeeeeeeccCCCccc-ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544 7889999999999999999998765543322 226999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHHH
Q 025029 165 TTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKRE 213 (259)
Q Consensus 165 kT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~~ 213 (259)
+|+||||||||++||++++||+||.++|||+|||+|||+|++|++++..
T Consensus 159 ~T~RRVNalE~~iIP~l~~tikyI~~~LeE~eRe~f~RlK~iK~~~e~~ 207 (211)
T COG1394 159 KTKRRVNALEYVIIPRLENTIKYIESKLEEREREDFVRLKKIKKKKEAK 207 (211)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997754
No 5
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=100.00 E-value=1.9e-55 Score=384.07 Aligned_cols=197 Identities=21% Similarity=0.161 Sum_probs=183.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHH
Q 025029 6 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVL 85 (259)
Q Consensus 6 ~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~ 85 (259)
..+|.|||++|+++|++|++|++||+||++|||+|++||++++.++.++++.+++.+.+||.++..|....|.. .
T Consensus 2 ~~~v~pTK~eL~~lk~~L~~a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~-----~ 76 (201)
T PRK02195 2 MSKIKLTKNSLKKQKKQLKMLERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFD-----E 76 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----h
Confidence 45789999999999999999999999999999999999999999999999999999999999999999988873 2
Q ss_pred hhcccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 86 ENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKT 165 (259)
Q Consensus 86 ~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkk 165 (259)
.+++ ...|.++.+|||||+||.|+....+ ..+||+++||+|+|+|+..|.++++.++++|++|+++++|+.||++
T Consensus 77 ~~~~--~~~v~~~~~nimGV~vP~~~~~~~~---~~~Y~~~~t~~~lD~a~~~~~~ll~~~i~lAe~E~~l~~L~~ei~k 151 (201)
T PRK02195 77 DLIK--VKKVEKDYENIAGVEVPILDSIEFE---IIEYSLLNTPIWVDTGIELLKELVQLKIEAEVLQERLLLLEEELRK 151 (201)
T ss_pred hcCC--cceEEEeeeeEeeeeeceeeeeecC---CCCcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 5577888899999999999996652 3679999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHH
Q 025029 166 TNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKR 212 (259)
Q Consensus 166 T~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~ 212 (259)
|+|||||||||+||++++||+||+++|||+|||+|||+|++|+++.+
T Consensus 152 T~rRVNalE~v~IP~~~~~ik~I~~~LeE~ERe~~~RlK~iK~~~~~ 198 (201)
T PRK02195 152 TTQRVNLFEKVLIPETKANIKKIKIFLGDQETAAVVRQKIAKKKIEK 198 (201)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988764
No 6
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=100.00 E-value=1.2e-54 Score=377.28 Aligned_cols=195 Identities=42% Similarity=0.607 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHHhhcccCce
Q 025029 14 TMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASI 93 (259)
Q Consensus 14 ~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~~~v~~~~~ 93 (259)
|+|+++|+++++|++||+||++|||+|+++|+++++++.++++.+++.+++||++|..|.+..|.++...++++++ ...
T Consensus 1 m~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~~-~~~ 79 (196)
T PF01813_consen 1 MELIRLKRRLKLAKRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSSVAESVP-ESV 79 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHTS-S----
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHhcCC-CCc
Confidence 7999999999999999999999999999999999999999999999999999999999999889878788887775 377
Q ss_pred EEEeeeeeeeeeeeceeeeeecC-CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025029 94 KVRSRQENIAGVKIPKFEYFTDG-ETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNA 172 (259)
Q Consensus 94 ~v~~~~~nImGV~vP~~~~~~~~-~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~RRVNA 172 (259)
+|.++.+|||||++|.|+..... ..+.++||+++||+|+|+|+..|.++++.++++|++|++|++|+.||++|+|||||
T Consensus 80 ~v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~~~~~~~~~d~a~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~RRVNA 159 (196)
T PF01813_consen 80 EVEVKERNIMGVRVPVLEVKEVRRPFPSPPYGLLGTPPWLDEAREKFEELLELLIELAELETALRRLAEEIRKTQRRVNA 159 (196)
T ss_dssp EEEEEEEEETTEEEEEEEEE--GGTTS------TT--HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred EEEEEEEEEEEEEeceEEeeecccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999987721 22348899999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhh
Q 025029 173 LENVVKPRLENTITYIKGELDELEREDFFRLKKIQGY 209 (259)
Q Consensus 173 LE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~k 209 (259)
||||+||++++||+||.++|||+|||||||+|++|+|
T Consensus 160 LE~vlIP~l~~tik~I~~~LeE~EREef~RlK~iK~K 196 (196)
T PF01813_consen 160 LEKVLIPRLEETIKYIRSELEEREREEFFRLKKIKKK 196 (196)
T ss_dssp HHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999976
No 7
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.83 E-value=16 Score=27.18 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhhccccCC
Q 025029 129 GQQVQQCRAAYVKAIELLVELASL---QTSFLTLDEAIKTTNRRVNALENVVKPR 180 (259)
Q Consensus 129 ~~~id~a~~~~~~~l~~lielA~l---e~~~~~L~~eIkkT~RRVNALE~vvIP~ 180 (259)
.....+|+..|.++++.|+.+... ...-.....-|..-..|+++|+..+ |.
T Consensus 19 ~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v-~~ 72 (75)
T cd02682 19 EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN-PA 72 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc-cc
Confidence 346789999999999999999999 8888888999999999999999874 63
No 8
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.03 E-value=1.1e+02 Score=26.74 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 13 VTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSS 66 (259)
Q Consensus 13 R~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~ 66 (259)
+..|..+|.++.....-..=|+.--++|..+|.++..+-.++...+...+.+..
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999998888888877777663
No 9
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=45.06 E-value=1.3e+02 Score=22.85 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 12 TVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDS 65 (259)
Q Consensus 12 TR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A 65 (259)
.-.+...+-..|....-.++-|++|-|-|.-++++++.-..+.|.++.+...+|
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~~ 77 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSKA 77 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345777888899999999999999999999999999999999999888776544
No 10
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=40.83 E-value=58 Score=30.00 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=41.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025029 26 ATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAK 73 (259)
Q Consensus 26 A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~ 73 (259)
.+-|+.-|+.++++|..++.++-+.-.+.+++|...|...+..|+.=.
T Consensus 2 v~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RV 49 (283)
T PF11285_consen 2 VQEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRV 49 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHH
Confidence 356888999999999999999999999999999999988887775443
No 11
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=38.59 E-value=2e+02 Score=27.35 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhccccCCchhHHHHHHhhhchhHHH
Q 025029 128 GGQQVQQCRAAYVKAIELLVEL-ASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELERE 198 (259)
Q Consensus 128 t~~~id~a~~~~~~~l~~liel-A~le~~~~~L~~eIkkT~RRVNALE~vvIP~le~tIkyI~~~LeE~ERE 198 (259)
.+.|+......+...+...-++ .+++...+.+...+.+.+|-|+-|+. +++.....+...++..+=+
T Consensus 223 ~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~d----eIE~~~~~v~fave~~~d~ 290 (336)
T PF05055_consen 223 VGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRLVDRLED----EIEHMKALVDFAVERGEDE 290 (336)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHhcCccc
Confidence 3669999888888887777654 67789999999999999999999876 4567777777777766533
No 12
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=38.21 E-value=33 Score=27.20 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHH
Q 025029 154 TSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLK 204 (259)
Q Consensus 154 ~~~~~L~~eIkkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlK 204 (259)
..|...-.---.....+|+|.|+ --|++..+++.|++.|..+.
T Consensus 36 ~~l~~al~~~~~~~~~~Nvl~Hi--------~Gyfk~~ls~~EK~~~~~~i 78 (117)
T PF08349_consen 36 ELLMEALSKPPTRGSHINVLQHI--------FGYFKKKLSSEEKQHFLDLI 78 (117)
T ss_pred HHHHHHHhcCCCchhHHHHHHHH--------HHHHHHhCCHHHHHHHHHHH
Confidence 33333334444567789999996 48999999999999998774
No 13
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=31.37 E-value=52 Score=20.96 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.1
Q ss_pred hHHHHHHhhhchhHHHHHHHHH
Q 025029 183 NTITYIKGELDELEREDFFRLK 204 (259)
Q Consensus 183 ~tIkyI~~~LeE~EREef~RlK 204 (259)
.-..-|-..||.+++|.|++|=
T Consensus 13 ~L~~~ID~ALd~~D~e~F~~Ls 34 (37)
T PF08858_consen 13 QLLELIDEALDNRDKEWFYELS 34 (37)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3456689999999999999873
No 14
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=28.52 E-value=2.4e+02 Score=23.71 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 025029 129 GQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENV 176 (259)
Q Consensus 129 ~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~RRVNALE~v 176 (259)
+-.+|.++.....++...-+|-.-=..++.|+..||..+|-|..||..
T Consensus 101 cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~lD~lE~~ 148 (149)
T PF10157_consen 101 CDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKLLDLLESL 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345788888888888888888888888999999999999999999864
No 15
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.26 E-value=2.1e+02 Score=25.58 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 14 TMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIV 52 (259)
Q Consensus 14 ~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~ 52 (259)
.++..++.++..-..-++-++.+.++|...+..+..++.
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 444555555555555555555555555544444433333
No 16
>PRK11637 AmiB activator; Provisional
Probab=27.14 E-value=5.7e+02 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=18.6
Q ss_pred ccCCchhHHHHHHhhhchhHHHHHHHHHHHhh
Q 025029 177 VKPRLENTITYIKGELDELEREDFFRLKKIQG 208 (259)
Q Consensus 177 vIP~le~tIkyI~~~LeE~EREef~RlKkiK~ 208 (259)
.+=.|+..++.....|.+.++++----+.|.+
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777667777666655443344443
No 17
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=26.79 E-value=2.3e+02 Score=23.49 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhh
Q 025029 138 AYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGY 209 (259)
Q Consensus 138 ~~~~~l~~lielA~le~~~~~L~~eIkkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~k 209 (259)
.+.++++.++..+.--.+|....+-+..|- +.++|-+++ |.+...+||.--+|+.=+|+..=++
T Consensus 14 ~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl-------~~i~P~i~e-I~~~~~eld~~~~ee~e~L~~~L~~ 77 (147)
T PF05659_consen 14 VFGELLKAVIDASKKSLSFKSILKRLESTL-------ESIIPIIKE-IDKLNVELDRPRQEEIERLKELLEK 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------HHhhhHHHH-HHHHhhhcCCchhHHHHHHHHHHHH
Confidence 455777777777777777777777777663 237888877 9999999999989998888765544
No 18
>PRK14127 cell division protein GpsB; Provisional
Probab=26.40 E-value=3.3e+02 Score=21.65 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=42.2
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 025029 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENV 176 (259)
Q Consensus 121 ~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~RRVNALE~v 176 (259)
.+|....-...+|.....|+.+.. +.+.++..+..|...+...+.++...+..
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l~~---e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAFQK---EIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 567776667788888888887765 66777899999999999999999877544
No 19
>PRK14011 prefoldin subunit alpha; Provisional
Probab=24.79 E-value=4.1e+02 Score=22.09 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCch
Q 025029 130 QQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLE 182 (259)
Q Consensus 130 ~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~RRVNALE~vvIP~le 182 (259)
-.+++|...|.+= +..++.+...|...|.+.+.-++.|+.++=|.++
T Consensus 84 k~~~eA~~~~~~r------i~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~ 130 (144)
T PRK14011 84 KDVSEVIEDFKKS------VEELDKTKKEGNKKIEELNKEITKLRKELEKRAQ 130 (144)
T ss_pred ecHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777654 3455777788888888888888887776544433
No 20
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.42 E-value=2.8e+02 Score=19.33 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhc
Q 025029 131 QVQQCRAAYVKAIELLVELASLQ---TSFLTLDEAIKTTNRRVNALEN 175 (259)
Q Consensus 131 ~id~a~~~~~~~l~~lielA~le---~~~~~L~~eIkkT~RRVNALE~ 175 (259)
..++|...|.++++.++.....+ ..-..|..-++....|++.|..
T Consensus 20 ~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~ 67 (69)
T PF04212_consen 20 NYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKE 67 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999998877 3333366677777777766543
No 21
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.16 E-value=3.9e+02 Score=20.51 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cccCCchhHHHHHHhhhchhHHHHH
Q 025029 132 VQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALEN---VVKPRLENTITYIKGELDELEREDF 200 (259)
Q Consensus 132 id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~RRVNALE~---vvIP~le~tIkyI~~~LeE~EREef 200 (259)
++.......+=++.+++=-.+...|..|+.=|...+.|.|.-.. +.+|.+ .--.-|...|-..=....
T Consensus 12 ~~~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l-~P~~~i~a~l~~~~~~~~ 82 (109)
T PF03980_consen 12 IEFLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSL-TPEEDIRAHLAPYKKKER 82 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCC-ChHHHHHHHhHHHHHHHH
Confidence 44444445555667777789999999999999999999996553 444444 223334444443333333
No 22
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=21.03 E-value=5.7e+02 Score=22.43 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=42.7
Q ss_pred CCCCcHHHHHH--HHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 025029 8 TVVPTVTMLGV--MKSRLVGATRGH---ALLKKKSDALTVQFRQILK---------NIVTTKESMGEVMKDS 65 (259)
Q Consensus 8 ~v~PTR~~L~~--lK~rL~~A~rG~---~LLk~KrdaL~~ef~~i~~---------~~~~~r~~~~~~~~~A 65 (259)
++.|++.+-+. -|.+....+||- +-...|..|++.+|..+.+ ++.++++.+-+.+++|
T Consensus 5 nikpskenrlsilskdkmdsfkrgswatssfreksra~~~R~~S~RR~~IK~~~~~K~iELKr~I~E~I~Ks 76 (244)
T PF06334_consen 5 NIKPSKENRLSILSKDKMDSFKRGSWATSSFREKSRATFQRFFSFRRMHIKPSHYSKFIELKREIFEIIQKS 76 (244)
T ss_pred CCCcccccceeeeehhhhhhhhcCccchhhHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Confidence 57788887653 477888888884 6788999999999988765 3556666666666655
Done!