Query 025029
Match_columns 259
No_of_seqs 165 out of 638
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_A V-type sodium ATPase su 100.0 6.4E-62 2.2E-66 428.2 21.2 206 6-212 9-216 (217)
2 3a5c_G V-type ATP synthase sub 100.0 7.2E-61 2.5E-65 423.0 11.6 201 8-212 3-203 (223)
3 3swf_A CGMP-gated cation chann 35.1 45 0.0015 23.8 4.0 33 147-179 14-50 (74)
4 1lq7_A Alpha3W; three helix bu 33.3 1E+02 0.0035 20.7 5.2 41 125-165 20-66 (67)
5 3ggy_A Increased sodium tolera 30.1 95 0.0033 25.9 5.9 43 11-53 4-46 (193)
6 3frr_A Uncharacterized protein 26.4 1.2E+02 0.0042 25.2 5.9 39 15-53 9-47 (191)
7 3he5_A Synzip1; heterodimeric 23.5 72 0.0025 20.2 2.9 44 149-193 5-48 (49)
8 3na7_A HP0958; flagellar bioge 19.2 1.1E+02 0.0037 26.2 4.3 56 141-197 5-60 (256)
9 2l5g_B Putative uncharacterize 16.3 1.5E+02 0.005 18.8 3.2 22 154-175 9-30 (42)
10 3ljm_A Coil Ser L9C; de novo d 15.9 1.8E+02 0.0061 16.7 3.2 24 152-175 6-29 (31)
No 1
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=100.00 E-value=6.4e-62 Score=428.17 Aligned_cols=206 Identities=29% Similarity=0.407 Sum_probs=173.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHH
Q 025029 6 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVL 85 (259)
Q Consensus 6 ~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~ 85 (259)
..+|+||||+|+.+|++|++|++||+|||+|||+|+++|+++++++.++++.+++.+++||++|+.|.+.+|+.+...++
T Consensus 9 ~~~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~ 88 (217)
T 3aon_A 9 RLNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDELL 88 (217)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999975566676
Q ss_pred hhcccCceEEEeeeeeeeeeeeceeeeeecC--CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 86 ENVQNASIKVRSRQENIAGVKIPKFEYFTDG--ETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAI 163 (259)
Q Consensus 86 ~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~--~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eI 163 (259)
.+++ ...+|.++.+|||||+||+|++.... .....+||+++||+|+|+|+..|.+++++++++|++|++|++|++||
T Consensus 89 ~~~~-~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~~ygl~~t~~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eI 167 (217)
T 3aon_A 89 ALPA-ENVSISVVEKNIMSVKVPLMNFQYDETLNETPLEYGYLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLMAEEI 167 (217)
T ss_dssp TSCS-CCCEEEEEEEEETTEEEEEEEEECCGGGTTSCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-CceEEEEEEEEEEEEEeceEEEEecccccCCcCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6664 57899999999999999999987421 12226699999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHH
Q 025029 164 KTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKR 212 (259)
Q Consensus 164 kkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~ 212 (259)
++|+|||||||||+||++++||+||.++|||+|||+|||||+||+++++
T Consensus 168 kkT~RRVNALE~viIP~~e~tikyI~~~LdE~EReef~RlKkiK~~~~~ 216 (217)
T 3aon_A 168 EKTRRRVNALEYMTIPQLEETIYYIKMKLEENERAEVTRLIKVKNMGTE 216 (217)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHhHHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998763
No 2
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=100.00 E-value=7.2e-61 Score=423.01 Aligned_cols=201 Identities=30% Similarity=0.404 Sum_probs=123.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHHhh
Q 025029 8 TVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLEN 87 (259)
Q Consensus 8 ~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~~~ 87 (259)
+|+||||+|+.+|++|++|++||+|||+|||+|+++|+++++++.+++..+++.+++||++|+.|.+.+|+.+...++.+
T Consensus 3 ~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~ 82 (223)
T 3a5c_G 3 QVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALG 82 (223)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999997666667656
Q ss_pred cccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025029 88 VQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTN 167 (259)
Q Consensus 88 v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~ 167 (259)
++ ...+|.++.+|||||+||+|++.... ..+||+++||+|+|+|+..|.+++++++++|++|++|++|++||++|+
T Consensus 83 ~~-~~~~v~~~~~nImGV~vP~~~~~~~~---~~~ygl~~t~~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~ 158 (223)
T 3a5c_G 83 VP-PLEGVEAEVENVWGSKVPRLKATFPD---GALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTT 158 (223)
T ss_dssp -----------------------------------------------------CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred CC-CCeEEEEEEEEEEEEEeceEEeccCC---CCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 46789999999999999999987221 256999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHH
Q 025029 168 RRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKR 212 (259)
Q Consensus 168 RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~ 212 (259)
|||||||||+||++++||+||.++|||+|||+|||||++|+++++
T Consensus 159 RRVNALE~viIP~le~tikyI~~~LdE~EReef~RlKkiK~k~~~ 203 (223)
T 3a5c_G 159 RRVNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEA 203 (223)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875
No 3
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=35.10 E-value=45 Score=23.81 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhhhhhccccC
Q 025029 147 VELASLQTSFLTLDEAIKTTN----RRVNALENVVKP 179 (259)
Q Consensus 147 ielA~le~~~~~L~~eIkkT~----RRVNALE~vvIP 179 (259)
--+-.+||.|.+|..|..-++ +|+.-||+.+.|
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345567999999988876665 788888886655
No 4
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=33.27 E-value=1e+02 Score=20.69 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=33.4
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 025029 125 LARGGQQVQQCRAAYVKAIELLVEL------ASLQTSFLTLDEAIKT 165 (259)
Q Consensus 125 l~~t~~~id~a~~~~~~~l~~liel------A~le~~~~~L~~eIkk 165 (259)
.++++..|.+....|+++...+-++ --.+..+..|.+||++
T Consensus 20 alggggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 20 ALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 3456778999999999999888765 4578888889999886
No 5
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=30.05 E-value=95 Score=25.94 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 11 PTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVT 53 (259)
Q Consensus 11 PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~ 53 (259)
|+-..-.++|..|++|..=..+|++|+.++....|.-+.++..
T Consensus 4 ~~~~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~ 46 (193)
T 3ggy_A 4 SMIPFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLL 46 (193)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445668999999999999999999999999777766655543
No 6
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=26.37 E-value=1.2e+02 Score=25.18 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029 15 MLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVT 53 (259)
Q Consensus 15 ~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~ 53 (259)
+-.++|..|++|..=..+|++|+.++.+..|.-+.++.+
T Consensus 9 ~~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~ 47 (191)
T 3frr_A 9 KAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLA 47 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999777766655543
No 7
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.47 E-value=72 Score=20.21 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccCCchhHHHHHHhhhc
Q 025029 149 LASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELD 193 (259)
Q Consensus 149 lA~le~~~~~L~~eIkkT~RRVNALE~vvIP~le~tIkyI~~~Le 193 (259)
+|.+++.+..|+.|-. |-.+-|.-.+-+|.-++..|...+..++
T Consensus 5 vaqlenevaslenene-tlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENE-TLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccH-HHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777766643 4455677777777777777666655544
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=19.19 E-value=1.1e+02 Score=26.17 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCchhHHHHHHhhhchhHH
Q 025029 141 KAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELER 197 (259)
Q Consensus 141 ~~l~~lielA~le~~~~~L~~eIkkT~RRVNALE~vvIP~le~tIkyI~~~LeE~ER 197 (259)
+-+..|++|..+...+..|...++.....++.|+.- +=.+...+..+...+++.++
T Consensus 5 ~~L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~-~~~l~~~~~~~~~~l~d~~~ 60 (256)
T 3na7_A 5 THLKQLIEISHLDKEIDSLEPLIREKRKDLDKALND-KEAKNKAILNLEEEKLALKL 60 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554442 23344444444444444433
No 9
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=16.25 E-value=1.5e+02 Score=18.82 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhc
Q 025029 154 TSFLTLDEAIKTTNRRVNALEN 175 (259)
Q Consensus 154 ~~~~~L~~eIkkT~RRVNALE~ 175 (259)
..+.+++.||.+|...+|-|.+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888876654
No 10
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=15.86 E-value=1.8e+02 Score=16.73 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhc
Q 025029 152 LQTSFLTLDEAIKTTNRRVNALEN 175 (259)
Q Consensus 152 le~~~~~L~~eIkkT~RRVNALE~ 175 (259)
++..+..|+.-+.....+..||||
T Consensus 6 lekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555555555555666665
Done!