Query 025030
Match_columns 259
No_of_seqs 175 out of 1210
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 100.0 4.9E-47 1.1E-51 311.1 15.5 195 1-239 1-205 (379)
2 KOG0699 Serine/threonine prote 100.0 2.4E-44 5.1E-49 304.9 16.9 239 1-239 1-411 (542)
3 PTZ00224 protein phosphatase 2 100.0 9.2E-40 2E-44 290.0 22.3 182 1-237 1-183 (381)
4 PLN03145 Protein phosphatase 2 100.0 1.4E-39 3.1E-44 287.9 20.9 174 18-237 61-244 (365)
5 PF00481 PP2C: Protein phospha 100.0 1.5E-39 3.1E-44 277.2 13.8 180 23-247 1-193 (254)
6 KOG0698 Serine/threonine prote 100.0 5.8E-38 1.3E-42 275.9 19.7 185 24-255 42-248 (330)
7 KOG0700 Protein phosphatase 2C 100.0 9.2E-35 2E-39 251.5 14.3 181 35-255 84-335 (390)
8 COG0631 PTC1 Serine/threonine 100.0 1.8E-31 4E-36 227.6 13.8 169 20-235 6-181 (262)
9 smart00332 PP2Cc Serine/threon 100.0 1.5E-28 3.4E-33 208.7 21.5 193 20-256 4-204 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 1.5E-27 3.3E-32 202.1 20.1 179 22-244 1-184 (254)
11 PRK14559 putative protein seri 99.9 1.7E-25 3.8E-30 209.4 15.2 181 21-248 374-585 (645)
12 KOG1323 Serine/threonine phosp 99.9 2.8E-22 6.1E-27 169.3 12.4 117 49-213 143-298 (493)
13 KOG0618 Serine/threonine phosp 99.6 1.6E-15 3.4E-20 143.5 10.7 184 22-256 522-721 (1081)
14 PF13672 PP2C_2: Protein phosp 99.5 4.9E-14 1.1E-18 116.6 10.1 130 27-199 3-138 (212)
15 KOG1379 Serine/threonine prote 99.2 3.8E-10 8.3E-15 95.9 11.2 109 36-198 91-208 (330)
16 smart00331 PP2C_SIG Sigma fact 99.1 1E-09 2.2E-14 89.4 11.5 109 34-197 15-126 (193)
17 TIGR02865 spore_II_E stage II 97.8 0.00035 7.6E-09 68.4 12.9 115 30-200 561-678 (764)
18 PF07228 SpoIIE: Stage II spor 97.4 0.004 8.7E-08 50.2 12.5 42 159-200 60-105 (193)
19 COG3253 ywfI Predicted heme pe 30.5 21 0.00046 29.7 0.6 46 190-235 129-179 (230)
20 TIGR02276 beta_rpt_yvtn 40-res 26.0 81 0.0018 17.7 2.5 18 170-187 3-20 (42)
21 PF05785 CNF1: Rho-activating 24.2 82 0.0018 27.2 3.0 26 155-181 128-153 (281)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-47 Score=311.15 Aligned_cols=195 Identities=42% Similarity=0.718 Sum_probs=174.5
Q ss_pred CCcccCCCCcccccccCCCCceEEEEEecccCCCCCcceeEEecCCC---CCeeEEEEEeCCCChHHHHHHHHHHHHHHH
Q 025030 1 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLD---DSTSFFGVYDGHGGKVVAKFCAKFLHQQVL 77 (259)
Q Consensus 1 m~~~~~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~---~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~ 77 (259)
||.+|-||.|+|....++.+.++||++|+||||..|||++.....+. .+|.||||||||.|..+|++++++|.+.+.
T Consensus 1 MGaFLdKPkteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~ 80 (379)
T KOG0697|consen 1 MGAFLDKPKTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHII 80 (379)
T ss_pred CCccccCcccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998654443 389999999999999999999999999998
Q ss_pred hcccccC-------CCHHHHHHHHHHHHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCC
Q 025030 78 KNKAYAA-------GDVGTSVQKAFFRMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGP 150 (259)
Q Consensus 78 ~~~~~~~-------~~~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
.+..+.. ++++.-++..|+++|+.++.......
T Consensus 81 sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~---------------------------------------- 120 (379)
T KOG0697|consen 81 SSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISK---------------------------------------- 120 (379)
T ss_pred hhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhc----------------------------------------
Confidence 8765542 26778899999999998874321100
Q ss_pred CCCCCCCCCCCceEEEEEeCCeEEEEeeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcCcEEEccccCCccccccc
Q 025030 151 HSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARA 230 (259)
Q Consensus 151 ~~~~~~~~~GsTa~v~~i~~~~l~vAnvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~~~rv~g~l~~tRa 230 (259)
...++||||+.+++.+.++|++|+|||||||||+|.+..-|.||+|.+|.|++||..+||.|.-.|+||.|+++||
T Consensus 121 ----~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRA 196 (379)
T KOG0697|consen 121 ----GSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRA 196 (379)
T ss_pred ----ccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehh
Confidence 2235999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcc
Q 025030 231 IGTVLGDLS 239 (259)
Q Consensus 231 lGd~~~k~~ 239 (259)
|||+++|..
T Consensus 197 lGDydyK~v 205 (379)
T KOG0697|consen 197 LGDYDYKNV 205 (379)
T ss_pred ccCcccccC
Confidence 999998755
No 2
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-44 Score=304.91 Aligned_cols=239 Identities=45% Similarity=0.718 Sum_probs=188.0
Q ss_pred CCcccCCCCcccccccCCCCceEEEEEecccCCCCCcceeEEecCCCCCeeEEEEEeCCCChHHHHHHHHHHHHHHHhcc
Q 025030 1 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNK 80 (259)
Q Consensus 1 m~~~~~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~ 80 (259)
||.||++|+|.|.+.++.++-+.||+++++|||..|||++-++.+++.++.+|+|||||||..+|+|++.+|+..|.+..
T Consensus 1 MGAYLs~P~t~K~s~dg~g~lL~yg~s~MQGWRvsqEDAHNci~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k 80 (542)
T KOG0699|consen 1 MGAYLSKPITEKESEDGSGNLLSYGCSTMQGWRVSQEDAHNCIVDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKERK 80 (542)
T ss_pred CcccccCCccccccccccCccchhchhhhhccccchhhhhcccccccCcceEEEEecCCCcHHHHHHHHHhhhHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccchhHHHHhhhcccc--------------------------------cc------c
Q 025030 81 AYAAGDVGTSVQKAFFRMDEMMKGQRGWRELAVLGDKIN--------------------------------KF------T 122 (259)
Q Consensus 81 ~~~~~~~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~--------------------------------~~------~ 122 (259)
.+...++..+|++||+..|..++.....+++..+.++.. .+ .
T Consensus 81 ~yk~g~~~~aL~~AFl~fD~~l~~ee~~keLk~iag~~~~k~~~aeaDd~deed~a~l~EEa~~pl~ElL~rY~G~~~hK 160 (542)
T KOG0699|consen 81 FYKAGDVAEALQKAFLDFDDFLRAEESMKELKDIAGEGKPKKAGAEADDEDEEDRADLIEEASVPLAELLKRYGGAGVHK 160 (542)
T ss_pred hhhcccHHHHHHHHHhchhhhhcCHHHHHHHHHHcCCCCcccccccccccchHHHHHHHHhccCcHHHHHHHhcCCCccc
Confidence 888899999999999999988875544434333322100 00 0
Q ss_pred cc-----------------------------------------------ccc------------------------cccC
Q 025030 123 GM-----------------------------------------------IEG------------------------LIWS 131 (259)
Q Consensus 123 ~~-----------------------------------------------~~~------------------------~~~~ 131 (259)
++ +.. +.+.
T Consensus 161 ~~~sp~~~~g~~s~e~~~~~~~~~eA~p~dst~~~ps~~~~p~A~A~~~~~s~~d~~te~g~~k~~g~~~g~~g~~~~S~ 240 (542)
T KOG0699|consen 161 SLLSPFLAKGDVSDESEDEDEDEEEAEPQDSTEREPSENEDPMASAEVVIESAEDKETEEGSPKKKGQKRGQKGHPIQSE 240 (542)
T ss_pred cccChhhhccCCccCCCcccccccccCCCCccccCcccccCCcccceeccccccccccccCCCCCCCcccccCCCcchhh
Confidence 00 000 0000
Q ss_pred -------CC-------CCCCCCCCC-----------------CccccC------C-------------------------
Q 025030 132 -------PR-------GGDSNDQPN-----------------DWAFEE------G------------------------- 149 (259)
Q Consensus 132 -------~~-------~~~~~~~~~-----------------~~~~~~------~------------------------- 149 (259)
.. +.++....+ .+..+. .
T Consensus 241 s~Kl~q~sKsef~fE~~~sS~d~~D~a~~EEeD~~k~~d~sd~~sse~~eneed~Ded~e~e~ddEE~~e~~map~~~~~ 320 (542)
T KOG0699|consen 241 SKKLNQSSKSEFDFETAPSSSDGVDGAATEEEDEVKSPDDSDAESSEFVENEEDDDEDAEDEQDDEEMVEGSMAPLLLGS 320 (542)
T ss_pred hhhcccccccccccccCCCcccccccccccccccccCCcccccccchhcccccccccccccccchhhhhhhccccccccc
Confidence 00 000000000 000000 0
Q ss_pred CCCCCCCCCCCCceEEEEEeCCeEEEEeeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcCcEEE-ccccCCccccc
Q 025030 150 PHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIH-AGRVNGSLNLA 228 (259)
Q Consensus 150 ~~~~~~~~~~GsTa~v~~i~~~~l~vAnvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~-~~rv~g~l~~t 228 (259)
.-.......+|||++||++.+++|||||+||||+|++|.|+++-||.||+|..+.|..||.++||.|. .+||||+|.++
T Consensus 321 ~g~EePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLS 400 (542)
T KOG0699|consen 321 GGAEEPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLS 400 (542)
T ss_pred ccCcCCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchh
Confidence 00012356789999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccccccCCcc
Q 025030 229 RAIGTVLGDLS 239 (259)
Q Consensus 229 RalGd~~~k~~ 239 (259)
|+|||+.+|..
T Consensus 401 RA~GDHaYK~N 411 (542)
T KOG0699|consen 401 RAFGDHAYKKN 411 (542)
T ss_pred hhhhhhhhhcc
Confidence 99999988755
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=9.2e-40 Score=290.03 Aligned_cols=182 Identities=33% Similarity=0.537 Sum_probs=160.0
Q ss_pred CCcccCCCCcccccccCCCCceEEEEEecccCCCCCcceeEEecCCCCCeeEEEEEeCCCChHHHHHHHHHHHHHHHhcc
Q 025030 1 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNK 80 (259)
Q Consensus 1 m~~~~~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~ 80 (259)
||.+|++|.+++.++...+..+.+|..+++|+|++|||++++.. ..+..+|||||||||..||+|++++|++.+.+..
T Consensus 1 mg~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~--~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~ 78 (381)
T PTZ00224 1 MGIMLPKPVLSKLVDRAGNSIFRCASACVNGYRESMEDAHLLYL--TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEP 78 (381)
T ss_pred CCccCCCCccccccccCCCccEEEEEEeCCCCCCCCCCeeEecc--CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999987654 2356799999999999999999999998875432
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 025030 81 AYAAGDVGTSVQKAFFRMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSG 160 (259)
Q Consensus 81 ~~~~~~~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 160 (259)
. ....+.|+++|..+|+.+.+. ...+|
T Consensus 79 ~---~~~~~~l~~a~~~~d~~i~~~--------------------------------------------------~~~~G 105 (381)
T PTZ00224 79 E---PMTDERMEELCLEIDEEWMDS--------------------------------------------------GREGG 105 (381)
T ss_pred c---cccHHHHHHHHHHHHHHHHhc--------------------------------------------------ccCCC
Confidence 2 123566899999999888631 12369
Q ss_pred CceEEEEEe-CCeEEEEeeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcCcEEEccccCCccccccccccccCC
Q 025030 161 STACVAIIR-NNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGTVLGD 237 (259)
Q Consensus 161 sTa~v~~i~-~~~l~vAnvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~~~rv~g~l~~tRalGd~~~k 237 (259)
||+++++|. +.++||||+||||||++++|++++||.||++.++.|+.||.++||.+..+|++|.+++||+|||..+|
T Consensus 106 sTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K 183 (381)
T PTZ00224 106 STGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFK 183 (381)
T ss_pred CeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCcccc
Confidence 999998886 57999999999999999999999999999999999999999999999999999999999999997644
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.4e-39 Score=287.89 Aligned_cols=174 Identities=35% Similarity=0.573 Sum_probs=149.9
Q ss_pred CCCceEEEEEecccCCCCCcceeEEecCCC----------CCeeEEEEEeCCCChHHHHHHHHHHHHHHHhcccccCCCH
Q 025030 18 ENDRLRYGLSSMQGWRATMEDAHAAYPDLD----------DSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDV 87 (259)
Q Consensus 18 ~~~~~~~g~~s~~G~R~~nED~~~~~~~~~----------~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~~~~~ 87 (259)
..+.++++..+.+|.|++|||++++..++. .+..||||||||||+.+++|++++|++.+.+...+. ..+
T Consensus 61 ~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~-~~~ 139 (365)
T PLN03145 61 FIPVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFP-REI 139 (365)
T ss_pred ccCceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccc-hhH
Confidence 346688999999999999999998755431 146899999999999999999999999988754443 467
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEE
Q 025030 88 GTSVQKAFFRMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAI 167 (259)
Q Consensus 88 ~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~ 167 (259)
.++|.++|.++|..+...... -....+|||+++++
T Consensus 140 ~~al~~af~~~d~~~~~~~~~---------------------------------------------~~~~~~GTTavv~l 174 (365)
T PLN03145 140 EKVVSSAFLQTDTAFAEACSL---------------------------------------------DASLASGTTALAAL 174 (365)
T ss_pred HHHHHHHHHHHhHHHHhhhcc---------------------------------------------ccCCCCcCcEEEEE
Confidence 889999999999988632100 02234999999999
Q ss_pred EeCCeEEEEeeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcCcEEEccccCCccccccccccccCC
Q 025030 168 IRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGTVLGD 237 (259)
Q Consensus 168 i~~~~l~vAnvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~~~rv~g~l~~tRalGd~~~k 237 (259)
|.++++||||+||||||++++|++++||.||++.++.|++||.+.||.+..+|++|.+++||+|||..+|
T Consensus 175 i~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k 244 (365)
T PLN03145 175 VVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHME 244 (365)
T ss_pred EECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.5e-39 Score=277.21 Aligned_cols=180 Identities=41% Similarity=0.659 Sum_probs=148.3
Q ss_pred EEEEEecccCCCCCcceeEEecCCC-----CCeeEEEEEeCCCChHHHHHHHHHHHHHHHhcccccCC-CHHHHHHHHHH
Q 025030 23 RYGLSSMQGWRATMEDAHAAYPDLD-----DSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAG-DVGTSVQKAFF 96 (259)
Q Consensus 23 ~~g~~s~~G~R~~nED~~~~~~~~~-----~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~~~-~~~~~l~~af~ 96 (259)
.+|..+.+|+|..|||++++..++. .+..+|||||||||+.+|+|++++|+..+.+....... ++.++|..+|.
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFL 80 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceee
Confidence 4789999999999999999877542 38899999999999999999999999888877665544 68999999999
Q ss_pred H-HHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEeCCeEEE
Q 025030 97 R-MDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIV 175 (259)
Q Consensus 97 ~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~~~~l~v 175 (259)
+ +++.+...... . ....+|||+++++|.+++||+
T Consensus 81 ~~~~~~~~~~~~~--------------------------------------------~-~~~~~GsTa~v~li~~~~l~v 115 (254)
T PF00481_consen 81 AFTDESLYSDSEN--------------------------------------------N-ESSKSGSTATVALIDGNKLYV 115 (254)
T ss_dssp HHHHHHHHHHHHH--------------------------------------------H-THTTSEEEEEEEEEETTEEEE
T ss_pred ecccccccccccc--------------------------------------------c-ccccccccccccccccceeEE
Confidence 9 88877631000 0 123599999999999999999
Q ss_pred EeeCCccEEEecCCeee-ccCCCCCCCCHHHHHHHHHcCcEEE-ccccCCccccccccccccCCc----cCCCCceee
Q 025030 176 ANAGDSRCVISRKGQAY-NLSRDHKPDLEAEKERILKAGGFIH-AGRVNGSLNLARAIGTVLGDL----SFLCPNLLC 247 (259)
Q Consensus 176 AnvGDSravl~r~g~~~-~LT~dH~~~~~~E~~Ri~~~gg~i~-~~rv~g~l~~tRalGd~~~k~----~~~c~~~~~ 247 (259)
||+|||||||++.+... +||.||+|.++.|+.||+++||.+. .+|++|.|++||+|||+.+|+ +++|.|.+.
T Consensus 116 anvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~ 193 (254)
T PF00481_consen 116 ANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDIS 193 (254)
T ss_dssp EEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEE
T ss_pred Eeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccccccccccceeeeecccc
Confidence 99999999999999888 9999999999999999999999999 999999999999999999998 789988763
No 6
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-38 Score=275.90 Aligned_cols=185 Identities=45% Similarity=0.693 Sum_probs=156.1
Q ss_pred EEEEecccCCCCCcceeEEecCCC------C-CeeEEEEEeCCCChHHHHHHHHHHHHHHHhcccccCC--CHHHHHHHH
Q 025030 24 YGLSSMQGWRATMEDAHAAYPDLD------D-STSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAG--DVGTSVQKA 94 (259)
Q Consensus 24 ~g~~s~~G~R~~nED~~~~~~~~~------~-~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~~~--~~~~~l~~a 94 (259)
.+.++.+|+|+.|||++.....+. . ...||||||||||+.+|+|+.++|+..+.++...... .+..+++++
T Consensus 42 ~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~ 121 (330)
T KOG0698|consen 42 GSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRA 121 (330)
T ss_pred eEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Confidence 455689999999999998766532 1 4899999999999999999999999999998777754 489999999
Q ss_pred HH-HHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEeCC-e
Q 025030 95 FF-RMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNN-H 172 (259)
Q Consensus 95 f~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~~~-~ 172 (259)
|. ++|..+.... + ....+|||++++++.++ +
T Consensus 122 F~~~~D~~~~~~~---~--------------------------------------------~~~~~gstav~~vi~~~~~ 154 (330)
T KOG0698|consen 122 FLTKTDSEFLEKR---E--------------------------------------------DNRSGGSTAVVALIKKGRK 154 (330)
T ss_pred HHHHHHHHHHhhc---c--------------------------------------------CCCCCcceeeeeeEecCCE
Confidence 99 6999886310 0 13458999999988865 9
Q ss_pred EEEEeeCCccEEEecCC-eeeccCCCCCCCCHHHHHHHHHcCcEEE----ccccCCccccccccccccCC-ccCCCCcee
Q 025030 173 LIVANAGDSRCVISRKG-QAYNLSRDHKPDLEAEKERILKAGGFIH----AGRVNGSLNLARAIGTVLGD-LSFLCPNLL 246 (259)
Q Consensus 173 l~vAnvGDSravl~r~g-~~~~LT~dH~~~~~~E~~Ri~~~gg~i~----~~rv~g~l~~tRalGd~~~k-~~~~c~~~~ 246 (259)
|||||+||||||||+.| ++++||.||+|.++.|+.||.++||+|. .+|++|.|++||+|||+.+| .++.+.|.+
T Consensus 155 l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei 234 (330)
T KOG0698|consen 155 LYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEI 234 (330)
T ss_pred EEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCce
Confidence 99999999999999865 8999999999999999999999999999 35999999999999999999 778887776
Q ss_pred ec-----CCceEEE
Q 025030 247 CV-----APKFLVT 255 (259)
Q Consensus 247 ~~-----~~~~~~~ 255 (259)
.. .++|++|
T Consensus 235 ~~~~~~~~deFLiL 248 (330)
T KOG0698|consen 235 QQVKINSDDEFLIL 248 (330)
T ss_pred EEEEcCCCCcEEEE
Confidence 32 2555554
No 7
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-35 Score=251.55 Aligned_cols=181 Identities=29% Similarity=0.360 Sum_probs=143.2
Q ss_pred CCcceeEEecCCCCCeeEEEEEeCCCChHHHHHHHHHHHHHHHhc------------ccc--------------------
Q 025030 35 TMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKN------------KAY-------------------- 82 (259)
Q Consensus 35 ~nED~~~~~~~~~~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~------------~~~-------------------- 82 (259)
.-||+..+.....+++.|+||||||||+.|++|++++|..++..+ ...
T Consensus 84 ~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~ 163 (390)
T KOG0700|consen 84 AEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSAD 163 (390)
T ss_pred cccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccC
Confidence 357777776666779999999999999999999999999987621 100
Q ss_pred c-CCCHHHHHHHHHHHHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 025030 83 A-AGDVGTSVQKAFFRMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGS 161 (259)
Q Consensus 83 ~-~~~~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gs 161 (259)
. ...+.++|.+||.++++.+...... .|...+ +...+||
T Consensus 164 ~~~~~v~~al~~Af~~tee~fl~~v~~----------------------------------~~~~~p------~lA~~GS 203 (390)
T KOG0700|consen 164 QRHGDVLEALSKAFEATEEDFLEMVDK----------------------------------QLQENP------ELALVGS 203 (390)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH----------------------------------hhccch------hhhhhcc
Confidence 1 3567899999999999999742100 111111 4467999
Q ss_pred ceEEEEEeCCeEEEEeeCCccEEEec---CC---eeeccCCCCCCCCHHHHHHHHHcCc----EEE--ccccCCcccccc
Q 025030 162 TACVAIIRNNHLIVANAGDSRCVISR---KG---QAYNLSRDHKPDLEAEKERILKAGG----FIH--AGRVNGSLNLAR 229 (259)
Q Consensus 162 Ta~v~~i~~~~l~vAnvGDSravl~r---~g---~~~~LT~dH~~~~~~E~~Ri~~~gg----~i~--~~rv~g~l~~tR 229 (259)
||+|+++.+..|||||+|||||||++ +| .+.|||.||+.++++|++||+.++. .|. .|||.|.|++||
T Consensus 204 C~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsR 283 (390)
T KOG0700|consen 204 CCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSR 283 (390)
T ss_pred eEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeee
Confidence 99999999999999999999999976 33 6899999999999999999999994 233 679999999999
Q ss_pred ccccccC---------------------CccCCCCceee-----cCCceEEE
Q 025030 230 AIGTVLG---------------------DLSFLCPNLLC-----VAPKFLVT 255 (259)
Q Consensus 230 alGd~~~---------------------k~~~~c~~~~~-----~~~~~~~~ 255 (259)
||||..+ +||+.|+|.+. ..|+|+|+
T Consensus 284 AfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIl 335 (390)
T KOG0700|consen 284 AFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLIL 335 (390)
T ss_pred eccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEE
Confidence 9998843 36778888763 34777775
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-31 Score=227.59 Aligned_cols=169 Identities=25% Similarity=0.309 Sum_probs=136.9
Q ss_pred CceEEEEEeccc-CCCCCcceeEEecCCCCC-eeEEEEEeCCCChHHHHHHHHHHHHHHHhccccc---CCC--HHHHHH
Q 025030 20 DRLRYGLSSMQG-WRATMEDAHAAYPDLDDS-TSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYA---AGD--VGTSVQ 92 (259)
Q Consensus 20 ~~~~~g~~s~~G-~R~~nED~~~~~~~~~~~-~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~---~~~--~~~~l~ 92 (259)
..+.++..+..| .|.+|||++.+..+..++ ..||+|||||||+.+++++++.+.+.|.+..... ... ..+.+.
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~ 85 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLK 85 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 345555556665 488999999987643322 4799999999999999999999999888753221 111 578999
Q ss_pred HHHHHHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEeCCe
Q 025030 93 KAFFRMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNH 172 (259)
Q Consensus 93 ~af~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~~~~ 172 (259)
+++..+++.+..... .......||||++++++.+++
T Consensus 86 ~~~~~~n~~i~~~~~--------------------------------------------~~~~~~~mgtTl~~~~~~~~~ 121 (262)
T COG0631 86 EAILKANEAIAEEGQ--------------------------------------------LNEDVRGMGTTLVLLLIRGNK 121 (262)
T ss_pred HHHHHHHHHHHHhhh--------------------------------------------cccccCCCceeEEEEEEECCe
Confidence 999999998874210 001446799999999999999
Q ss_pred EEEEeeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcCcEEEccccCCcccccccccccc
Q 025030 173 LIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGTVL 235 (259)
Q Consensus 173 l~vAnvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~~~rv~g~l~~tRalGd~~ 235 (259)
+|+|||||||+||+++|.+++||.||++.++.|+.|+...++.....|.+ ++||+||+..
T Consensus 122 l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~---~ltralG~~~ 181 (262)
T COG0631 122 LYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPRRN---ALTRALGDFD 181 (262)
T ss_pred EEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhCccch---hhhhhcCCCc
Confidence 99999999999999999999999999999999999999988877777766 9999999885
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=1.5e-28 Score=208.69 Aligned_cols=193 Identities=46% Similarity=0.645 Sum_probs=157.8
Q ss_pred CceEEEEEecccCCCCCcceeEEecCCCCCeeEEEEEeCCCChHHHHHHHHHHHHHHHhcccccC---CCHHHHHHHHHH
Q 025030 20 DRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAA---GDVGTSVQKAFF 96 (259)
Q Consensus 20 ~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~~---~~~~~~l~~af~ 96 (259)
..+.++..+.+|.|..|||++.+......+..+|+|||||||+.+|+++++.+.+.+.+...... ..+...|++++.
T Consensus 4 ~~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (255)
T smart00332 4 LGLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFL 83 (255)
T ss_pred CceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHH
Confidence 34677888888999999999988765446788999999999999999999999998877544332 247888999999
Q ss_pred HHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEeCCeEEEE
Q 025030 97 RMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVA 176 (259)
Q Consensus 97 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~~~~l~vA 176 (259)
++++.+....... .....+|||++++++.++++|++
T Consensus 84 ~~~~~~~~~~~~~--------------------------------------------~~~~~~gtT~~~~~~~~~~l~~~ 119 (255)
T smart00332 84 KTDEEILEELESL--------------------------------------------EEDAGSGSTAVVALISGNKLYVA 119 (255)
T ss_pred HHHHHHHHhhhhc--------------------------------------------cCCCCCCccEEEEEEECCEEEEE
Confidence 9999886421100 02245899999999999999999
Q ss_pred eeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcCcEEEccccCCccccccccccccCCccCCCCcee-----ecCCc
Q 025030 177 NAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGTVLGDLSFLCPNLL-----CVAPK 251 (259)
Q Consensus 177 nvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~~~rv~g~l~~tRalGd~~~k~~~~c~~~~-----~~~~~ 251 (259)
|+||||+|++++++..+||.||++.++.|..||...++.+..++.++...+||++|+...|+.+.+.|.+ ..+.+
T Consensus 120 ~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d 199 (255)
T smart00332 120 NVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDD 199 (255)
T ss_pred eccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCc
Confidence 9999999999999999999999999999999999999999988999999999999988766665554443 34455
Q ss_pred eEEEE
Q 025030 252 FLVTL 256 (259)
Q Consensus 252 ~~~~~ 256 (259)
++++|
T Consensus 200 ~ill~ 204 (255)
T smart00332 200 FLILA 204 (255)
T ss_pred EEEEE
Confidence 55554
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.96 E-value=1.5e-27 Score=202.07 Aligned_cols=179 Identities=40% Similarity=0.609 Sum_probs=147.9
Q ss_pred eEEEEEecccCCCCCcceeEEecCCC-CCeeEEEEEeCCCChHHHHHHHHHHHHHHHhccccc----CCCHHHHHHHHHH
Q 025030 22 LRYGLSSMQGWRATMEDAHAAYPDLD-DSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYA----AGDVGTSVQKAFF 96 (259)
Q Consensus 22 ~~~g~~s~~G~R~~nED~~~~~~~~~-~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~----~~~~~~~l~~af~ 96 (259)
+.++.++..|.|+.|||++.+..... .+..+|+|+|||||...++++++.+.+.+.+..... ...+...|+++|.
T Consensus 1 ~~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 80 (254)
T cd00143 1 FSAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFL 80 (254)
T ss_pred CceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 35778889999999999998865422 267899999999999999999999998887754433 3567788999999
Q ss_pred HHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEeCCeEEEE
Q 025030 97 RMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVA 176 (259)
Q Consensus 97 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~~~~l~vA 176 (259)
++++.+....... .....+|||++++++.++.++++
T Consensus 81 ~~~~~l~~~~~~~--------------------------------------------~~~~~~gtT~~~~~~~~~~l~~~ 116 (254)
T cd00143 81 RADEEILEEAQDE--------------------------------------------PDDARSGTTAVVALIRGNKLYVA 116 (254)
T ss_pred HHHHHHHHhhhhc--------------------------------------------cCCCCCCCcEEEEEEECCEEEEE
Confidence 9999886421100 03346899999999999999999
Q ss_pred eeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcCcEEEccccCCccccccccccccCCccCCCCc
Q 025030 177 NAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGTVLGDLSFLCPN 244 (259)
Q Consensus 177 nvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~~~rv~g~l~~tRalGd~~~k~~~~c~~ 244 (259)
|+||||+|++++++.+++|.||++.++.|+.|+...++++...+.++...+||+||+..+|+...+.|
T Consensus 117 ~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~ 184 (254)
T cd00143 117 NVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEP 184 (254)
T ss_pred EecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCCccccCCEEcCC
Confidence 99999999999999999999999999999999999999888788888899999999986554443333
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.93 E-value=1.7e-25 Score=209.38 Aligned_cols=181 Identities=20% Similarity=0.270 Sum_probs=123.5
Q ss_pred ceEEEEEecccC-CCCCcceeEEecCC------C----CCeeEEEEEeCCCChHH----HHHHHHHHHHHHHhcccccCC
Q 025030 21 RLRYGLSSMQGW-RATMEDAHAAYPDL------D----DSTSFFGVYDGHGGKVV----AKFCAKFLHQQVLKNKAYAAG 85 (259)
Q Consensus 21 ~~~~g~~s~~G~-R~~nED~~~~~~~~------~----~~~~~fgVfDGhgG~~a----a~~~~~~l~~~l~~~~~~~~~ 85 (259)
.+.++..+++|. |.+|||++.+...+ . ....+|+|||||||+.+ |+++++.|.+.+.+..... .
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~-~ 452 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDE-L 452 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccc-c
Confidence 477889999996 99999998765421 0 13568999999997765 5555566655554332211 1
Q ss_pred CHHHHHHHHHHHHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEE
Q 025030 86 DVGTSVQKAFFRMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACV 165 (259)
Q Consensus 86 ~~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v 165 (259)
...+.++++|..+|..+....... .......||||+++
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~------------------------------------------~~~~~~~MGTTlv~ 490 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQN------------------------------------------ARSGSGRMGTTLVM 490 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhc------------------------------------------ccccCCCCCceeee
Confidence 246778999999998886321000 00023459999999
Q ss_pred EEEeCCeEEEEeeCCccEEEe-cCCeeeccCCCCCCCCHHHHHHHHHcCcEEEccccCCcccccccccccc---------
Q 025030 166 AIIRNNHLIVANAGDSRCVIS-RKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGTVL--------- 235 (259)
Q Consensus 166 ~~i~~~~l~vAnvGDSravl~-r~g~~~~LT~dH~~~~~~E~~Ri~~~gg~i~~~rv~g~l~~tRalGd~~--------- 235 (259)
+++.++++|+|||||||+|++ ++|++++||+||++.+...+.++... ....+ .+..++||+||+..
T Consensus 491 alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~~---~a~~~-p~~~~LTrALG~~~~~~l~Pdi~ 566 (645)
T PRK14559 491 ALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEPQ---IAYAR-PDAYQLTQALGPRDNSAIQPDIQ 566 (645)
T ss_pred EEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCHH---HHhcC-cccceeeeccCCCCCCcccceEE
Confidence 999999999999999999987 57899999999998754322221100 01122 34578999999752
Q ss_pred ------CCccCCCCceeec
Q 025030 236 ------GDLSFLCPNLLCV 248 (259)
Q Consensus 236 ------~k~~~~c~~~~~~ 248 (259)
++.+++|+|.+..
T Consensus 567 ~~~L~~gD~lLLCSDGL~D 585 (645)
T PRK14559 567 FLEIEEDTLLLLCSDGLSD 585 (645)
T ss_pred EEEcCCCCEEEEECCCCCC
Confidence 3456778887753
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.88 E-value=2.8e-22 Score=169.27 Aligned_cols=117 Identities=32% Similarity=0.525 Sum_probs=94.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHHHHhccc-------------------------cc--------------CCCHHH
Q 025030 49 STSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKA-------------------------YA--------------AGDVGT 89 (259)
Q Consensus 49 ~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~-------------------------~~--------------~~~~~~ 89 (259)
++.+|.+||||.|..+|-.+++.|++++..... ++ ..-+.-
T Consensus 143 ~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViG 222 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIG 222 (493)
T ss_pred cceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHH
Confidence 789999999999999999999888776643210 00 011346
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEe
Q 025030 90 SVQKAFFRMDEMMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIR 169 (259)
Q Consensus 90 ~l~~af~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~ 169 (259)
||+.||+.+|+.+..+.. . .....|||+++++..
T Consensus 223 AlEsAFqemDeqiarer~-----------------------------------~-----------~~~~GGCtalvvi~l 256 (493)
T KOG1323|consen 223 ALESAFQEMDEQIARERQ-----------------------------------V-----------WRLPGGCTALVVIVL 256 (493)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------------------------h-----------hcCCCCceEEEeeee
Confidence 899999999999874310 1 234589999999999
Q ss_pred CCeEEEEeeCCccEEEecCCeeeccCCCCCCCCHHHHHHHHHcC
Q 025030 170 NNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAG 213 (259)
Q Consensus 170 ~~~l~vAnvGDSravl~r~g~~~~LT~dH~~~~~~E~~Ri~~~g 213 (259)
-++||+||+|||||+|.|++.+++||++.+|. .||+|++..+
T Consensus 257 lGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~La 298 (493)
T KOG1323|consen 257 LGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQELA 298 (493)
T ss_pred ccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHHh
Confidence 99999999999999999999999999999997 8999997765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-15 Score=143.48 Aligned_cols=184 Identities=21% Similarity=0.323 Sum_probs=148.3
Q ss_pred eEEEEEecccCCCCCcceeEEecC-CCCCeeEEEEEeCCCChHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHH
Q 025030 22 LRYGLSSMQGWRATMEDAHAAYPD-LDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFFRMDE 100 (259)
Q Consensus 22 ~~~g~~s~~G~R~~nED~~~~~~~-~~~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~ 100 (259)
++||++...|.|..+.-+...+.+ +.+....||+|||-+-.....+++..+..++.++.+... +-.+-++++|.++++
T Consensus 522 ~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~-~et~~mr~~fl~~~r 600 (1081)
T KOG0618|consen 522 WTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYG-NETEQMRNTFLRLNR 600 (1081)
T ss_pred eeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHhh
Confidence 669999999999988877665444 345778999999999999999999999999998876663 344449999999999
Q ss_pred HhhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEeC--------Ce
Q 025030 101 MMKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRN--------NH 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~~--------~~ 172 (259)
++.. .+..-|..++.+.|.. .+
T Consensus 601 klg~--------------------------------------------------~g~~lg~~~~~~~i~~d~~~~asS~~ 630 (1081)
T KOG0618|consen 601 KLGE--------------------------------------------------EGQVLGGSVVLCQIVEDSLSPASSKT 630 (1081)
T ss_pred hhhh--------------------------------------------------hhccccchhhheeecccccCcccchh
Confidence 8843 1222344444444443 47
Q ss_pred EEEEeeCCccEEEecCCeeeccCCCC-CCCCHHHHHHHHHcCcEEE-ccccCCccccccccccccCCccCCCCcee----
Q 025030 173 LIVANAGDSRCVISRKGQAYNLSRDH-KPDLEAEKERILKAGGFIH-AGRVNGSLNLARAIGTVLGDLSFLCPNLL---- 246 (259)
Q Consensus 173 l~vAnvGDSravl~r~g~~~~LT~dH-~~~~~~E~~Ri~~~gg~i~-~~rv~g~l~~tRalGd~~~k~~~~c~~~~---- 246 (259)
+.+||+|+|.||+|++|+..++|+-. ...+++|.+||+..+|+|. +++++|+...||++|.+..-+.+...|.+
T Consensus 631 l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~ 710 (1081)
T KOG0618|consen 631 LFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVI 710 (1081)
T ss_pred hhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccccccccCCCceeeEe
Confidence 89999999999999999999997776 4559999999999999999 99999999999999998877777766654
Q ss_pred -ecCCceEEEE
Q 025030 247 -CVAPKFLVTL 256 (259)
Q Consensus 247 -~~~~~~~~~~ 256 (259)
..+|++++++
T Consensus 711 Lt~qdE~LIvg 721 (1081)
T KOG0618|consen 711 LTEQDEFLIVG 721 (1081)
T ss_pred cccCceEEEEc
Confidence 5567777653
No 14
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.53 E-value=4.9e-14 Score=116.65 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=69.3
Q ss_pred EecccCCCCCcceeEEecCCCCCeeEEEEEeCCCChHHH----HHHHHHHHHHHHhcccccCCC-HHHHHHHHHHHHHHH
Q 025030 27 SSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVA----KFCAKFLHQQVLKNKAYAAGD-VGTSVQKAFFRMDEM 101 (259)
Q Consensus 27 ~s~~G~R~~nED~~~~~~~~~~~~~~fgVfDGhgG~~aa----~~~~~~l~~~l~~~~~~~~~~-~~~~l~~af~~~d~~ 101 (259)
.+++|.|..|||++.+... .+..+++|+||+||...+ +.+++.+...+.+........ ....++.+..++...
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSI 80 (212)
T ss_dssp ----TTSSS--EEEEEE-T--CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 3678899999999985543 455677999999955554 445555555554433222111 112222222222221
Q ss_pred hhccchhHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEeCCeEEEEeeCCc
Q 025030 102 MKGQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDS 181 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~~~~l~vAnvGDS 181 (259)
+........ . .......+||++++++.++.++++|+|||
T Consensus 81 ~~~~~~~~~-~----------------------------------------~~~~~~~~tTl~~~v~~~~~~~~~~iGD~ 119 (212)
T PF13672_consen 81 VRAFQSAKQ-A----------------------------------------DLELRDYGTTLLALVIDPDKVYIFNIGDS 119 (212)
T ss_dssp H----HHHH-H----------------------------------------SGGGTT-EE-EEEEEEETTEEEEEEESS-
T ss_pred hhhhhhhhh-c----------------------------------------cccccccCceEEEEEEECCEEEEEEECCC
Confidence 100000000 0 00234579999999999999999999999
Q ss_pred cEEE-ecCCeeeccCCCCC
Q 025030 182 RCVI-SRKGQAYNLSRDHK 199 (259)
Q Consensus 182 ravl-~r~g~~~~LT~dH~ 199 (259)
|+|+ .++|+..+++.+|+
T Consensus 120 ~i~~~~~~g~~~~l~~~~~ 138 (212)
T PF13672_consen 120 RIYVIRRNGEIQQLTDDHS 138 (212)
T ss_dssp EEEEEEETTEEEE-S---B
T ss_pred eEEEEECCCEEEEcCCCcc
Confidence 9964 67999999999997
No 15
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.15 E-value=3.8e-10 Score=95.86 Aligned_cols=109 Identities=26% Similarity=0.386 Sum_probs=80.8
Q ss_pred CcceeEEecCCCCCeeEEEEEeCCCCh-----HHHHHHHHHHHH--HHHhcccccCCCHHHHHHHHHHHHHHHhhccchh
Q 025030 36 MEDAHAAYPDLDDSTSFFGVYDGHGGK-----VVAKFCAKFLHQ--QVLKNKAYAAGDVGTSVQKAFFRMDEMMKGQRGW 108 (259)
Q Consensus 36 nED~~~~~~~~~~~~~~fgVfDGhgG~-----~aa~~~~~~l~~--~l~~~~~~~~~~~~~~l~~af~~~d~~~~~~~~~ 108 (259)
-||++++..+ ....+.||+||.||+ ..+.|.++.+-. .+.++..+...++...|.++|.++-.+-
T Consensus 91 GEDa~Fvss~--~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~~------ 162 (330)
T KOG1379|consen 91 GEDAWFVSSN--PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQK------ 162 (330)
T ss_pred CCcceeeccC--cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhcC------
Confidence 6899987653 477899999999955 456665554432 3334455555689999999988775421
Q ss_pred HHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEe--CCeEEEEeeCCccEEEe
Q 025030 109 RELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIR--NNHLIVANAGDSRCVIS 186 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~--~~~l~vAnvGDSravl~ 186 (259)
...-.+|||+++.+. +++||+||+|||-..+.
T Consensus 163 ----------------------------------------------~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~Vv 196 (330)
T KOG1379|consen 163 ----------------------------------------------VPIVGSSTACILALDRENGKLHTANLGDSGFLVV 196 (330)
T ss_pred ----------------------------------------------CCCCCcceeeeeeeecCCCeEEEeeccCcceEEE
Confidence 223478899998888 78999999999999999
Q ss_pred cCCeeeccCCCC
Q 025030 187 RKGQAYNLSRDH 198 (259)
Q Consensus 187 r~g~~~~LT~dH 198 (259)
|+|+++.-|..+
T Consensus 197 R~G~vv~~S~~Q 208 (330)
T KOG1379|consen 197 REGKVVFRSPEQ 208 (330)
T ss_pred ECCEEEEcCchh
Confidence 999876666543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.11 E-value=1e-09 Score=89.43 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=78.0
Q ss_pred CCCcceeEEecCCCCCeeEEEEEeCCCChHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHhhccchhHHHHh
Q 025030 34 ATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFFRMDEMMKGQRGWRELAV 113 (259)
Q Consensus 34 ~~nED~~~~~~~~~~~~~~fgVfDGhgG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~~~~~~~~~~~~~~ 113 (259)
...-|++.+... +++..+|+|+||||+...|.+++..+...+.+..... .. +.+.+.++++.+...
T Consensus 15 ~~~GD~~~~~~~-~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~-~~----~~~~l~~~n~~l~~~-------- 80 (193)
T smart00331 15 QVGGDFYDVVKL-PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG-IS----LSQILERLNRAIYEN-------- 80 (193)
T ss_pred hcCccEEEEEEe-CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC-CC----HHHHHHHHHHHHHhc--------
Confidence 456788866552 3357899999999988888888888888776644332 22 444556667666531
Q ss_pred hhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEE--eCCeEEEEeeCCccEEEec-CCe
Q 025030 114 LGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAII--RNNHLIVANAGDSRCVISR-KGQ 190 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i--~~~~l~vAnvGDSravl~r-~g~ 190 (259)
....+|+|++++++ ..++++++|+||+|+++++ ++.
T Consensus 81 -----------------------------------------~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~ 119 (193)
T smart00331 81 -----------------------------------------GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGG 119 (193)
T ss_pred -----------------------------------------CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCC
Confidence 12347999999998 5779999999999999998 665
Q ss_pred eeccCCC
Q 025030 191 AYNLSRD 197 (259)
Q Consensus 191 ~~~LT~d 197 (259)
..+++.+
T Consensus 120 ~~~~~~~ 126 (193)
T smart00331 120 LVEDLDD 126 (193)
T ss_pred eEEEcCC
Confidence 5555555
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=97.79 E-value=0.00035 Score=68.40 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=75.3
Q ss_pred ccCCCCCcceeEEecCCCCCeeEEEEEeCCC-ChHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHhhccchh
Q 025030 30 QGWRATMEDAHAAYPDLDDSTSFFGVYDGHG-GKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFFRMDEMMKGQRGW 108 (259)
Q Consensus 30 ~G~R~~nED~~~~~~~~~~~~~~fgVfDGhg-G~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~~~~~~~~~ 108 (259)
++.+..+.|.+.+... +++..+++|.||+| |..|+. .+....+.+.+..... -++ ..++..+|..+...
T Consensus 561 k~g~~vsGD~y~~~~l-~~g~~~~~laDGmGhG~~Aa~-~S~~~~~ll~~~~~~g-~~~----~~ai~~lN~~L~~~--- 630 (764)
T TIGR02865 561 KDGELVSGDSYSFGKL-SAGKYAVAISDGMGSGPEAAQ-ESSACVRLLEKFLESG-FDR----EVAIKTVNSILSLR--- 630 (764)
T ss_pred CCCCcccCceEEEEEE-CCCEEEEEEEcccCCCHHHHH-HHHHHHHHHHHHHHcC-CCH----HHHHHHHHHHHHhC---
Confidence 3446778999876552 34567899999999 555554 4444444443321111 123 34445555554311
Q ss_pred HHHHhhhcccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEEEe--CCeEEEEeeCCccEEEe
Q 025030 109 RELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIR--NNHLIVANAGDSRCVIS 186 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsTa~v~~i~--~~~l~vAnvGDSravl~ 186 (259)
....+.+|+.+++++ .+++.++|+|+++.++.
T Consensus 631 ----------------------------------------------~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~ 664 (764)
T TIGR02865 631 ----------------------------------------------STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIK 664 (764)
T ss_pred ----------------------------------------------CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEE
Confidence 112368999998886 67999999999999999
Q ss_pred cCCeeeccCCCCCC
Q 025030 187 RKGQAYNLSRDHKP 200 (259)
Q Consensus 187 r~g~~~~LT~dH~~ 200 (259)
|++++.+++..+-|
T Consensus 665 r~~~v~~i~s~~lP 678 (764)
T TIGR02865 665 RGAKVEVIRSSNLP 678 (764)
T ss_pred ECCEEEEecCCCce
Confidence 99999988776655
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.43 E-value=0.004 Score=50.21 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCCceEEEEEe--CCeEEEEeeCCccEEEecC--CeeeccCCCCCC
Q 025030 159 SGSTACVAIIR--NNHLIVANAGDSRCVISRK--GQAYNLSRDHKP 200 (259)
Q Consensus 159 ~GsTa~v~~i~--~~~l~vAnvGDSravl~r~--g~~~~LT~dH~~ 200 (259)
..+|++++++. .++++++|+|++++++++. +....+.....|
T Consensus 60 ~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~ 105 (193)
T PF07228_consen 60 RYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP 105 (193)
T ss_dssp TTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB
T ss_pred ccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc
Confidence 67888888876 4589999999999999997 444444443333
No 19
>COG3253 ywfI Predicted heme peroxidase involved in anaerobic stress response [General function prediction only]
Probab=30.55 E-value=21 Score=29.73 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=32.5
Q ss_pred eeeccCCCCCCC--CHHHHHHHHHcCcEEE---ccccCCcccccccccccc
Q 025030 190 QAYNLSRDHKPD--LEAEKERILKAGGFIH---AGRVNGSLNLARAIGTVL 235 (259)
Q Consensus 190 ~~~~LT~dH~~~--~~~E~~Ri~~~gg~i~---~~rv~g~l~~tRalGd~~ 235 (259)
.+++++++-+.. ..+||++|.+.||.+. .+.|......+-+|||+.
T Consensus 129 ~~YPm~Ks~~WYlLp~eeR~~~M~eHg~~a~~y~~~Vr~~tt~SfGi~DyE 179 (230)
T COG3253 129 CAYPMSKSYNWYLLPFEERREMMREHGMIAREYAGKVRSNTTYSFGIGDYE 179 (230)
T ss_pred EEeeccCCcchhcCCHHHHHHHHHHHHHHHhccCCceeeeecccccccceE
Confidence 477888866654 5899999999998777 333544455566777764
No 20
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.99 E-value=81 Score=17.69 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.0
Q ss_pred CCeEEEEeeCCccEEEec
Q 025030 170 NNHLIVANAGDSRCVISR 187 (259)
Q Consensus 170 ~~~l~vAnvGDSravl~r 187 (259)
+++||++|-|+-.+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 567899998877777765
No 21
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=24.23 E-value=82 Score=27.19 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=19.5
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeeCCc
Q 025030 155 AGPTSGSTACVAIIRNNHLIVANAGDS 181 (259)
Q Consensus 155 ~~~~~GsTa~v~~i~~~~l~vAnvGDS 181 (259)
...-+|||.+++ +.++.+|..|+|-+
T Consensus 128 sG~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 128 SGALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp ---BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CCccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 345689998777 78999999999988
Done!