BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025031
         (259 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
 pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
           Complexed With A Magnesium Ion
          Length = 194

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 20/166 (12%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKEE 125
           ++AAVLV L      + RV+LT R+S L TH G+++ P              A REA+EE
Sbjct: 34  RRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQ-AALREAQEE 90

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL--HNRKAFKPTPNPGEVEEVFDAPLEMF 183
           + LDP+ V ++  ++   +     V PV+G +        + TP   EV ++    L   
Sbjct: 91  VALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTP---EVAQIITPTLAEL 147

Query: 184 ----LKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAIL 225
               L  E R + +    G +  L+ + +   +    IWG+TA +L
Sbjct: 148 RAVPLVRERRTLPD----GTEVPLYRYPWRGLD----IWGMTARVL 185


>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain
           At3g16270 From Arabidopsis Thaliana
 pdb|2DCP|A Chain A, Fully Automated Nmr Structure Determination Of The
           Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana
          Length = 140

 Score = 28.1 bits (61), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 9   IQRLIVIAQHLRDYKGPPSTY--DQMEQKIRETSGKVTSLVGSQESAS 54
           +QR  V  ++L  YKG P     D + + +RET+ +  S + S+E+ S
Sbjct: 88  MQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGS 135


>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
 pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
 pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
 pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
 pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
 pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
          Length = 330

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 117 TATREAKEEIGLDPSLVDVVTVIE 140
            ++++AKE++G DP  V+V T+IE
Sbjct: 292 ASSQKAKEKLGWDPRYVNVKTIIE 315


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,285,425
Number of Sequences: 62578
Number of extensions: 284534
Number of successful extensions: 692
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 4
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)