Query 025031
Match_columns 259
No_of_seqs 461 out of 2128
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 09:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02709 nudix hydrolase 100.0 7E-41 1.5E-45 289.7 12.7 185 64-248 30-219 (222)
2 KOG3069 Peroxisomal NUDIX hydr 100.0 5.7E-34 1.2E-38 243.9 8.9 222 14-248 2-227 (246)
3 PRK10707 putative NUDIX hydrol 100.0 3.1E-33 6.6E-38 238.5 11.1 161 64-232 28-188 (190)
4 cd03426 CoAse Coenzyme A pyrop 100.0 2.1E-30 4.6E-35 214.5 10.4 156 66-228 1-157 (157)
5 cd04692 Nudix_Hydrolase_33 Mem 99.8 2.5E-19 5.5E-24 145.7 7.3 120 67-188 2-129 (144)
6 cd04679 Nudix_Hydrolase_20 Mem 99.8 1.5E-18 3.4E-23 137.3 8.9 110 69-186 4-115 (125)
7 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.6E-18 3.4E-23 138.0 8.4 109 69-185 2-111 (126)
8 cd04691 Nudix_Hydrolase_32 Mem 99.8 3E-18 6.4E-23 134.8 8.9 98 83-187 12-109 (117)
9 cd04682 Nudix_Hydrolase_23 Mem 99.8 3E-18 6.4E-23 135.3 8.8 103 83-188 13-116 (122)
10 cd04681 Nudix_Hydrolase_22 Mem 99.7 3.1E-18 6.7E-23 136.2 8.2 108 68-184 2-113 (130)
11 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 6.6E-18 1.4E-22 135.6 8.6 114 68-187 3-116 (137)
12 cd04683 Nudix_Hydrolase_24 Mem 99.7 1.4E-17 3.1E-22 130.5 8.7 110 69-186 2-114 (120)
13 cd04693 Nudix_Hydrolase_34 Mem 99.7 9.4E-18 2E-22 133.2 7.7 110 69-187 2-114 (127)
14 cd03429 NADH_pyrophosphatase N 99.7 1.4E-17 3E-22 133.6 7.8 106 69-186 2-107 (131)
15 cd04670 Nudix_Hydrolase_12 Mem 99.7 2.8E-17 6.1E-22 130.4 9.3 112 68-187 3-114 (127)
16 cd04694 Nudix_Hydrolase_35 Mem 99.7 2.9E-17 6.2E-22 134.2 9.3 115 68-186 2-131 (143)
17 PRK15472 nucleoside triphospha 99.7 2.6E-17 5.7E-22 133.2 8.8 113 69-187 5-126 (141)
18 cd04678 Nudix_Hydrolase_19 Mem 99.7 4.4E-17 9.5E-22 129.5 9.8 114 68-187 3-118 (129)
19 PRK15434 GDP-mannose mannosyl 99.7 3E-17 6.5E-22 136.4 8.7 112 68-188 18-139 (159)
20 cd04664 Nudix_Hydrolase_7 Memb 99.7 3.5E-17 7.5E-22 130.2 8.3 109 70-186 4-118 (129)
21 cd03671 Ap4A_hydrolase_plant_l 99.7 4.7E-17 1E-21 132.8 9.3 112 68-187 4-132 (147)
22 PLN02325 nudix hydrolase 99.7 5.5E-17 1.2E-21 132.5 9.4 114 67-187 9-126 (144)
23 cd04673 Nudix_Hydrolase_15 Mem 99.7 3.4E-17 7.4E-22 128.2 7.5 108 69-187 2-115 (122)
24 cd03676 Nudix_hydrolase_3 Memb 99.7 3.5E-17 7.5E-22 138.1 8.0 122 62-186 27-158 (180)
25 cd03673 Ap6A_hydrolase Diadeno 99.7 3.9E-17 8.5E-22 129.2 7.8 110 68-187 3-117 (131)
26 cd03430 GDPMH GDP-mannose glyc 99.7 5.1E-17 1.1E-21 132.6 8.1 110 68-186 13-132 (144)
27 cd04680 Nudix_Hydrolase_21 Mem 99.7 4.5E-17 9.8E-22 127.3 7.3 106 69-186 2-108 (120)
28 cd04684 Nudix_Hydrolase_25 Con 99.7 7.3E-17 1.6E-21 127.2 7.8 109 70-186 3-117 (128)
29 TIGR02150 IPP_isom_1 isopenten 99.7 5.5E-17 1.2E-21 134.4 7.4 117 63-187 23-143 (158)
30 COG1051 ADP-ribose pyrophospha 99.7 1.5E-16 3.3E-21 130.2 9.8 112 66-185 9-121 (145)
31 cd02885 IPP_Isomerase Isopente 99.7 5.6E-17 1.2E-21 135.1 7.3 114 67-188 30-150 (165)
32 PRK15393 NUDIX hydrolase YfcD; 99.7 7.9E-17 1.7E-21 136.3 8.3 115 64-186 34-149 (180)
33 PRK09438 nudB dihydroneopterin 99.7 1.2E-16 2.6E-21 130.3 8.9 110 66-187 6-130 (148)
34 cd04695 Nudix_Hydrolase_36 Mem 99.7 9.8E-17 2.1E-21 128.3 7.9 110 69-188 4-116 (131)
35 cd04700 DR1025_like DR1025 fro 99.7 1.3E-16 2.8E-21 129.8 8.1 114 67-188 13-127 (142)
36 cd04677 Nudix_Hydrolase_18 Mem 99.7 1.5E-16 3.3E-21 126.5 7.9 113 66-187 6-123 (132)
37 cd03674 Nudix_Hydrolase_1 Memb 99.7 2E-16 4.2E-21 127.9 8.6 110 67-186 2-123 (138)
38 PF00293 NUDIX: NUDIX domain; 99.7 3.9E-17 8.5E-22 129.1 4.3 117 67-188 2-121 (134)
39 cd03427 MTH1 MutT homolog-1 (M 99.7 2.9E-16 6.4E-21 125.8 9.2 97 83-186 13-111 (137)
40 cd03428 Ap4A_hydrolase_human_l 99.7 1.2E-16 2.6E-21 126.9 6.8 110 67-187 3-116 (130)
41 PRK03759 isopentenyl-diphospha 99.7 1.7E-16 3.7E-21 134.6 7.3 116 64-187 31-153 (184)
42 cd04671 Nudix_Hydrolase_13 Mem 99.7 3.3E-16 7.1E-21 124.5 8.3 105 70-183 3-107 (123)
43 cd04696 Nudix_Hydrolase_37 Mem 99.7 2.9E-16 6.4E-21 124.3 7.6 107 69-187 4-115 (125)
44 cd03675 Nudix_Hydrolase_2 Cont 99.6 6.2E-16 1.3E-20 123.6 8.7 99 83-187 12-112 (134)
45 PRK10776 nucleoside triphospha 99.6 7.3E-16 1.6E-20 121.5 8.9 97 83-186 17-113 (129)
46 PRK11762 nudE adenosine nucleo 99.6 6.4E-16 1.4E-20 131.2 8.8 113 67-186 47-159 (185)
47 cd03672 Dcp2p mRNA decapping e 99.6 5.1E-16 1.1E-20 127.0 7.7 98 83-188 15-113 (145)
48 cd04690 Nudix_Hydrolase_31 Mem 99.6 9.7E-16 2.1E-20 119.6 8.6 92 83-185 13-109 (118)
49 cd04699 Nudix_Hydrolase_39 Mem 99.6 5.8E-16 1.3E-20 122.2 6.9 108 69-184 3-112 (129)
50 cd04689 Nudix_Hydrolase_30 Mem 99.6 1E-15 2.2E-20 121.1 8.3 96 83-184 13-112 (125)
51 cd04666 Nudix_Hydrolase_9 Memb 99.6 1.1E-15 2.5E-20 121.3 8.5 100 79-187 12-116 (122)
52 PRK10546 pyrimidine (deoxy)nuc 99.6 1.4E-15 2.9E-20 121.7 8.9 97 83-186 16-112 (135)
53 PRK00714 RNA pyrophosphohydrol 99.6 1.6E-15 3.5E-20 125.4 9.2 112 66-186 7-135 (156)
54 cd04688 Nudix_Hydrolase_29 Mem 99.6 1.8E-15 3.9E-20 119.8 7.4 98 83-186 13-118 (126)
55 cd03425 MutT_pyrophosphohydrol 99.6 2.4E-15 5.3E-20 117.0 8.0 97 83-186 14-110 (124)
56 cd04687 Nudix_Hydrolase_28 Mem 99.6 2.9E-15 6.3E-20 119.0 8.5 100 83-187 13-122 (128)
57 cd04672 Nudix_Hydrolase_14 Mem 99.6 3.2E-15 7E-20 118.1 8.5 104 69-186 4-112 (123)
58 PRK00241 nudC NADH pyrophospha 99.6 2.5E-15 5.3E-20 133.9 8.5 118 57-187 122-239 (256)
59 cd04669 Nudix_Hydrolase_11 Mem 99.6 2.9E-15 6.3E-20 118.4 7.9 95 83-186 13-114 (121)
60 cd04667 Nudix_Hydrolase_10 Mem 99.6 3.2E-15 6.9E-20 116.2 8.1 90 83-186 12-101 (112)
61 cd04511 Nudix_Hydrolase_4 Memb 99.6 6.2E-15 1.3E-19 117.7 9.0 106 66-184 12-117 (130)
62 TIGR00586 mutt mutator mutT pr 99.6 7.4E-15 1.6E-19 116.0 8.8 97 83-186 17-113 (128)
63 cd04676 Nudix_Hydrolase_17 Mem 99.6 5.5E-15 1.2E-19 116.1 7.7 106 69-186 4-117 (129)
64 cd04686 Nudix_Hydrolase_27 Mem 99.6 7.9E-15 1.7E-19 117.5 8.3 99 83-188 12-121 (131)
65 cd04662 Nudix_Hydrolase_5 Memb 99.6 1.1E-14 2.4E-19 116.2 8.7 108 69-180 3-126 (126)
66 TIGR00052 nudix-type nucleosid 99.5 9.8E-15 2.1E-19 124.1 7.2 117 67-186 44-165 (185)
67 cd02883 Nudix_Hydrolase Nudix 99.5 2.2E-14 4.7E-19 110.6 8.1 97 83-185 13-111 (123)
68 PLN02791 Nudix hydrolase homol 99.5 2.9E-14 6.2E-19 142.6 8.7 120 63-185 28-157 (770)
69 cd04685 Nudix_Hydrolase_26 Mem 99.5 7.9E-14 1.7E-18 112.4 8.6 114 69-186 2-123 (133)
70 PRK10729 nudF ADP-ribose pyrop 99.5 6.7E-14 1.4E-18 120.6 7.9 115 68-186 50-171 (202)
71 PRK05379 bifunctional nicotina 99.5 8E-14 1.7E-18 129.0 9.0 111 68-186 204-322 (340)
72 PLN02552 isopentenyl-diphospha 99.5 1.2E-13 2.5E-18 122.2 8.3 119 64-186 53-203 (247)
73 cd04665 Nudix_Hydrolase_8 Memb 99.5 2.8E-13 6E-18 107.2 8.5 101 69-183 2-102 (118)
74 cd04661 MRP_L46 Mitochondrial 99.4 1.8E-13 3.9E-18 109.9 6.4 95 83-186 14-120 (132)
75 PRK08999 hypothetical protein; 99.4 6E-13 1.3E-17 121.3 9.0 97 83-186 18-114 (312)
76 PRK15009 GDP-mannose pyrophosp 99.4 9.3E-13 2E-17 112.6 8.4 114 68-186 46-166 (191)
77 cd04674 Nudix_Hydrolase_16 Mem 99.4 1E-12 2.2E-17 104.0 7.6 46 83-131 16-61 (118)
78 TIGR02705 nudix_YtkD nucleosid 99.4 2.3E-12 5E-17 106.6 7.8 91 83-186 36-127 (156)
79 COG2816 NPY1 NTP pyrophosphohy 99.3 1.3E-12 2.7E-17 116.3 6.3 125 48-186 126-250 (279)
80 cd04663 Nudix_Hydrolase_6 Memb 99.3 3.6E-12 7.7E-17 101.9 7.8 99 80-185 12-115 (126)
81 COG0494 MutT NTP pyrophosphohy 99.3 7.1E-12 1.5E-16 98.6 8.0 113 69-188 13-136 (161)
82 PLN03143 nudix hydrolase; Prov 99.3 7.2E-12 1.6E-16 113.2 8.5 52 79-131 140-191 (291)
83 cd03670 ADPRase_NUDT9 ADP-ribo 99.3 5.3E-12 1.2E-16 107.2 6.9 50 75-130 42-91 (186)
84 KOG3084 NADH pyrophosphatase I 99.2 7E-12 1.5E-16 112.3 2.9 112 66-186 186-298 (345)
85 PLN02839 nudix hydrolase 99.2 5.8E-11 1.3E-15 109.4 7.7 123 62-185 198-326 (372)
86 KOG3041 Nucleoside diphosphate 99.1 1.5E-10 3.2E-15 97.5 7.7 117 66-186 72-194 (225)
87 COG1443 Idi Isopentenyldiphosp 99.0 5.1E-10 1.1E-14 92.7 5.4 115 67-188 33-155 (185)
88 KOG2839 Diadenosine and diphos 98.9 1.6E-09 3.6E-14 87.2 5.8 118 64-187 7-126 (145)
89 cd03431 DNA_Glycosylase_C DNA 98.9 7.5E-09 1.6E-13 80.0 7.9 91 83-186 15-105 (118)
90 KOG0648 Predicted NUDIX hydrol 98.8 7.2E-09 1.6E-13 92.9 5.9 119 65-188 113-233 (295)
91 COG4119 Predicted NTP pyrophos 98.4 1.4E-06 3.1E-11 68.9 8.0 57 74-131 10-68 (161)
92 PF14815 NUDIX_4: NUDIX domain 98.3 6.6E-07 1.4E-11 69.6 4.2 97 78-186 7-103 (114)
93 KOG4313 Thiamine pyrophosphoki 98.2 1.8E-06 4E-11 75.3 4.7 123 62-185 126-257 (306)
94 KOG4195 Transient receptor pot 97.8 2.7E-05 5.8E-10 67.1 4.8 59 63-127 109-178 (275)
95 KOG0142 Isopentenyl pyrophosph 97.7 2.8E-05 6.2E-10 66.1 3.7 117 65-186 50-183 (225)
96 PRK10880 adenine DNA glycosyla 97.5 0.00033 7.1E-09 65.3 8.4 148 12-186 184-331 (350)
97 KOG2937 Decapping enzyme compl 96.1 0.0018 3.8E-08 59.1 0.7 96 83-187 96-193 (348)
98 COG4112 Predicted phosphoester 95.9 0.03 6.4E-07 46.4 6.8 102 83-185 73-186 (203)
99 PF13869 NUDIX_2: Nucleotide h 95.2 0.032 6.9E-07 47.5 4.8 59 64-130 41-99 (188)
100 TIGR01084 mutY A/G-specific ad 93.9 0.2 4.3E-06 45.3 7.0 22 83-105 240-261 (275)
101 COG1194 MutY A/G-specific DNA 93.2 0.18 4E-06 46.7 5.7 92 66-185 235-326 (342)
102 KOG1689 mRNA cleavage factor I 92.6 0.22 4.7E-06 41.7 4.7 57 64-128 67-123 (221)
103 KOG4432 Uncharacterized NUDIX 88.1 0.88 1.9E-05 41.4 4.8 83 102-185 288-375 (405)
104 KOG4432 Uncharacterized NUDIX 87.7 0.47 1E-05 43.1 2.9 93 64-159 23-141 (405)
105 PF14443 DBC1: DBC1 85.2 0.92 2E-05 36.2 3.0 52 82-133 8-61 (126)
106 PRK13910 DNA glycosylase MutY; 83.3 3.2 6.9E-05 37.8 6.2 71 83-186 198-268 (289)
107 PF03487 IL13: Interleukin-13; 60.1 6.1 0.00013 25.1 1.4 23 103-126 14-36 (43)
108 KOG1202 Animal-type fatty acid 47.0 13 0.00029 40.4 2.2 31 100-137 270-300 (2376)
109 KOG4548 Mitochondrial ribosoma 33.2 53 0.0011 29.4 3.5 45 83-131 140-185 (263)
110 PF07026 DUF1317: Protein of u 24.5 48 0.001 22.9 1.4 21 100-124 24-44 (60)
111 COG4111 Uncharacterized conser 21.2 3.2E+02 0.0069 24.7 6.2 61 67-140 25-86 (322)
No 1
>PLN02709 nudix hydrolase
Probab=100.00 E-value=7e-41 Score=289.67 Aligned_cols=185 Identities=60% Similarity=1.043 Sum_probs=159.6
Q ss_pred CccceeEEEEEeecC---CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh
Q 025031 64 RPKKAAVLVCLFEGD---NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE 140 (259)
Q Consensus 64 ~~r~aaVli~l~~~~---~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~ 140 (259)
..|+|||+|+|+... +++++|||++|+.++++|+|+|+||||++|++|.++.+||+||++||+||++..++++|.++
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~ 109 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLE 109 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecC
Confidence 458899999998742 35789999999999999999999999999999868899999999999999999999999999
Q ss_pred hhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeecc--CceEEee
Q 025031 141 PFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQK--NKKYLIW 218 (259)
Q Consensus 141 ~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~--~~~~~IW 218 (259)
.+.+..++.|+|||+.+.....+.+.+|++||+++||+|+++|+++.+++...+.|.|..+.+|+|.|..+ ..++.||
T Consensus 110 ~~~t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~IW 189 (222)
T PLN02709 110 PFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIW 189 (222)
T ss_pred CeECCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCcccceEEEEeCCceEEEEEEEEeccCCCCCCEEE
Confidence 88888899999999999764455666899999999999999999999877666677788888999987321 1368999
Q ss_pred ehhHhhhhhhceeeeeCCCccccCCCCCCC
Q 025031 219 GITAAILVRAASVVYQKPPAFEEGNPKFKF 248 (259)
Q Consensus 219 GlTa~il~~~~~~~~~~~p~~~e~~~~~~~ 248 (259)
|+||+||.+++.+++++.|+|....+.++-
T Consensus 190 G~TA~IL~~l~~~~~~~~~~~~~~~~~~~~ 219 (222)
T PLN02709 190 ALTAGILIRVASIVYQRLPEFQERKPRFWN 219 (222)
T ss_pred cHHHHHHHHHHHHHhccCCCcccccccccc
Confidence 999999999999999999999655555443
No 2
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-34 Score=243.86 Aligned_cols=222 Identities=31% Similarity=0.418 Sum_probs=170.1
Q ss_pred HHHHHhhccCCCCCC-hHHHHHHHHHhcCceeeeeccccccccccccccccCccceeEEEEEeecCCCceEEEEeecccc
Q 025031 14 VIAQHLRDYKGPPST-YDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASR 92 (259)
Q Consensus 14 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~ 92 (259)
.++|+.+.++|+... .+.....+ +.. ..+.......+..+.+||+|+|+..++|+++|||+||+.+
T Consensus 2 ~l~~~~~~s~p~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~ 68 (246)
T KOG3069|consen 2 SLAQLQLLSSPCLVSTSNDPKRLL-----------GPA--TIISKSETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRT 68 (246)
T ss_pred chhhHHHhcCCCccccccchhhhc-----------Chh--hhhhhcccccCCCCCccEEEEEEEcCCCceEEEEEecccc
Confidence 468888888887755 33332211 000 0011122233466899999999997778899999999999
Q ss_pred cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc-CCCCCCccc
Q 025031 93 LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA-FKPTPNPGE 171 (259)
Q Consensus 93 ~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~-~~~~~~~~E 171 (259)
++.|+|++|||||++|+.|.+..+||+||++||+|++++.+.+++.++++....+..|.|+++.+.+... ...++|.+|
T Consensus 69 LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gE 148 (246)
T KOG3069|consen 69 LRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGE 148 (246)
T ss_pred ccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecccccccccCCchh
Confidence 9999999999999999999899999999999999999999999999999988888899999999887532 456889999
Q ss_pred hhhhcccchhhhcccchhhHHHHhhcccceeeeeeeee--ccCceEEeeehhHhhhhhhceeeeeCCCccccCCCCCCC
Q 025031 172 VEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKF 248 (259)
Q Consensus 172 v~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~--~~~~~~~IWGlTa~il~~~~~~~~~~~p~~~e~~~~~~~ 248 (259)
|.++||||+++|+.+.+.+..+....+......++.|- .....+.+||+|+.||.++..++++..+.+....++|+.
T Consensus 149 v~~~F~VPL~~ll~~~~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~iT~~Il~~~~~~l~~~l~~~~~~~~~h~l 227 (246)
T KOG3069|consen 149 VESAFWVPLTDLLLPKHQTAFQISRSYYRTYFFFIEYFFIWGVTNLFLWGITHGILGDLPNFLSPSLLTSLPYFQKHDL 227 (246)
T ss_pred eeeeeeeeHHHHhhhhcchHHHHhhhhhccchhhheeehhccCcchhhHHHHHHHHhcchhhcCchhhhcccccccccc
Confidence 99999999999999988765443333322222122221 123457899999999999999999988887766666655
No 3
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=100.00 E-value=3.1e-33 Score=238.52 Aligned_cols=161 Identities=32% Similarity=0.481 Sum_probs=136.3
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL 143 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~ 143 (259)
..+.|||++++..+++ ..|||++|+...+.|+|+|+||||++|++|+++++||+||++||||+.+..+.+++.+....
T Consensus 28 ~~~~aavvl~l~~~~~--~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~ 105 (190)
T PRK10707 28 NQRQAAVLIPIVRRPQ--PTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVD 105 (190)
T ss_pred cCCCeEEEEEEEECCC--CEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeee
Confidence 4567888888876433 39999999999889999999999999997658999999999999999999999999988766
Q ss_pred hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhHh
Q 025031 144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAA 223 (259)
Q Consensus 144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~ 223 (259)
+..++.++++++.+.... ...+|++|+.+++|+|++++.+..++....+.+.|..+.+++|.| +++.|||+||+
T Consensus 106 ~~~~~~~~~~v~~~~~~~--~~~~d~~Ev~~v~~vpl~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iWG~Ta~ 179 (190)
T PRK10707 106 SSTGYQVTPVVGIIPPDL--PYRANEDEVAAVFEMPLAEALHLGRYHPLDIYRRGQSHRVWLSWY----EQYFVWGMTAG 179 (190)
T ss_pred ccCCcEEEEEEEEECCCC--CCCCChhhhheEEEEeHHHHhCcccceeEEEeeCCcEEEEEEEEe----CCcEEEhHHHH
Confidence 667888999999887543 345688999999999999999987765555667787788899988 46899999999
Q ss_pred hhhhhceee
Q 025031 224 ILVRAASVV 232 (259)
Q Consensus 224 il~~~~~~~ 232 (259)
||.+++..+
T Consensus 180 il~~~~~~~ 188 (190)
T PRK10707 180 IIRELALQI 188 (190)
T ss_pred HHHHHHHHh
Confidence 999987653
No 4
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.97 E-value=2.1e-30 Score=214.45 Aligned_cols=156 Identities=44% Similarity=0.719 Sum_probs=121.4
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCC-CCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEG-DEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS 144 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~g-E~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~ 144 (259)
|++||+|++++. +++.+|||++|+..+..++|.|+||||++|.| | ++.+||+||++||||++...+..++.+..+..
T Consensus 1 ~~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdE-s~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~ 78 (157)
T cd03426 1 RRAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDE-DPVATALREAEEEIGLPPDSVEVLGRLPPYYT 78 (157)
T ss_pred CceEEEEEEEeC-CCceEEEEEEcccccccCCCcEECCCCCcCCCcC-CHHHHHHHHHHHHhCCCccceEEEEECCCccc
Confidence 568999998874 44459999999998777999999999999999 8 99999999999999999998888888776555
Q ss_pred hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhHhh
Q 025031 145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAI 224 (259)
Q Consensus 145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~i 224 (259)
..+..+++|++.+... ..+.++++|+.++.|+|++++.+..+.......+.+ ....+++.++. .++.|||+||||
T Consensus 79 ~~~~~v~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~iwg~t~~i 153 (157)
T cd03426 79 RSGFVVTPVVGLVPPP--LPLVLNPDEVAEVFEVPLSFLLDPANPRTTRRHGRG-GLTFPAFALPG--EGYVIWGLTARI 153 (157)
T ss_pred cCCCEEEEEEEEECCC--CCCCCCHHHhheeEEEcHHHHhCcCCceEEEEEeCC-ceEEEEEEecC--CCcEEEhHHHHH
Confidence 5566778888876543 234678889999999999999987654322223322 12244555542 368999999999
Q ss_pred hhhh
Q 025031 225 LVRA 228 (259)
Q Consensus 225 l~~~ 228 (259)
|.++
T Consensus 154 ~~~~ 157 (157)
T cd03426 154 LSEL 157 (157)
T ss_pred HhhC
Confidence 9874
No 5
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2.5e-19 Score=145.72 Aligned_cols=120 Identities=23% Similarity=0.153 Sum_probs=87.6
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhH
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFL 143 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~ 143 (259)
+.||.+.|++..+++.+||+++|+..+..++|.|++ |||++++|| ++.+||+||++|||||.+. .+..++.+....
T Consensus 2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gE-t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~ 80 (144)
T cd04692 2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGE-TPLEDGIRELEEELGLDVSADDLIPLGTFKIEY 80 (144)
T ss_pred ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCC-CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence 457888888865555699999999987889999999 599999999 9999999999999999764 455566554322
Q ss_pred h-h----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 144 S-K----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 144 ~-~----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
. . .....+.|++..... ...+.++++|+.++.|+|++++.+.-.
T Consensus 81 ~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 81 DHIGKLIDREFHHVYLYELKVP-LEEFTLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred cccCCCccceEEEEEEEeccCC-hhhcCCChhHhheEEEECHHHHHHHHH
Confidence 2 1 111234455544321 123456778999999999999976543
No 6
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=1.5e-18 Score=137.27 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=79.4
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--h
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--Y 146 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~ 146 (259)
+|.+++++ .++ +|||++|+.. ..+|.|+||||++|+|| ++.+||+||++||||+.+....+++........ .
T Consensus 4 ~~~~~i~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 77 (125)
T cd04679 4 GCGAAILR-DDG--KLLLVKRLRA--PEAGHWGIPGGKVDWME-AVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQ 77 (125)
T ss_pred EEEEEEEC-CCC--EEEEEEecCC--CCCCeEeCCeeeccCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCC
Confidence 45555555 345 8999999864 45799999999999999 999999999999999999888888776544322 1
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
......|++...... ....+++|+.++.|++++++.+.
T Consensus 78 ~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~~ 115 (125)
T cd04679 78 HWVAPVYLAENFSGE--PRLMEPDKLLELGWFALDALPQP 115 (125)
T ss_pred eEEEEEEEEeecCCc--cccCCCccccEEEEeCHHHCCch
Confidence 222223444433221 11245679999999999999764
No 7
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.6e-18 Score=137.98 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=81.8
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL 147 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~ 147 (259)
||.|++++ .+| +|||++|+.....++|.|++ |||+++.|| ++.+||+||++|||||++..+..++.+........
T Consensus 2 ~~~v~i~~-~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE-~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~ 77 (126)
T cd04697 2 ATYIFVFN-SEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAGE-SYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNR 77 (126)
T ss_pred eEEEEEEc-CCC--eEEEEECCCCCCCCCCcccCcCCcccCCCC-CHHHHHHHHHHHHHCCCccccEEeeEEEecCCCce
Confidence 56677776 455 89999999887778999999 699999999 99999999999999999987777766543221112
Q ss_pred ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
...+.|.+... ....++++|+.++.|++++++.+
T Consensus 78 ~~~~~f~~~~~----~~~~~~~~E~~~~~w~~~~el~~ 111 (126)
T cd04697 78 VWGKVFSCVYD----GPLKLQEEEVEEITWLSINEILQ 111 (126)
T ss_pred EEEEEEEEEEC----CCCCCCHhHhhheEEcCHHHHHH
Confidence 22233434332 23346778999999999999976
No 8
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=3e-18 Score=134.77 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=74.8
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|+.....++|.|+||||++|+|| ++.+||.||++||||+.+..+..++.+..... ....++.|++....
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--- 86 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGE-SQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYYVVTFWQ--- 86 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEEEEEEec---
Confidence 89999998875568999999999999999 99999999999999999777776666543222 23334455544322
Q ss_pred CCCCCCccchhhhcccchhhhcccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.. ++.+|+.++.|+|++++....
T Consensus 87 ~~--~~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 87 GE--IPAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred CC--CCcccccccEEcCHHHcchhh
Confidence 12 244899999999999997543
No 9
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=3e-18 Score=135.33 Aligned_cols=103 Identities=24% Similarity=0.185 Sum_probs=74.6
Q ss_pred EEEEeecccc-cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeeccc
Q 025031 83 RVILTKRASR-LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRK 161 (259)
Q Consensus 83 ~vLL~kRs~~-~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~ 161 (259)
+|||++|+.. ...++|.|+||||+++.|| ++.+||.||++||||+.+....+...............+.|++......
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 91 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGE-TPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFVVPLTARE 91 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCC-CHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEEEEEEecCC
Confidence 8999999986 5678999999999999999 9999999999999999876433221111111122333445555544322
Q ss_pred cCCCCCCccchhhhcccchhhhcccch
Q 025031 162 AFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 162 ~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
....+.+|+.++.|++++++.+..+
T Consensus 92 --~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 92 --DAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred --CccccCchhheeecccHHHHhhccc
Confidence 2346779999999999999987654
No 10
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=3.1e-18 Score=136.17 Aligned_cols=108 Identities=21% Similarity=0.316 Sum_probs=81.2
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL 147 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~ 147 (259)
+||.+++++ .++ +|||++|+.. .++|.|+||||+++.|| ++.+||.||++||||+++..+..++.....+...+
T Consensus 2 ~av~~~i~~-~~~--~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 75 (130)
T cd04681 2 AAVGVLILN-EDG--ELLVVRRARE--PGKGTLDLPGGFVDPGE-SAEEALIREIREETGLKVTELSYLFSLPNTYPYGG 75 (130)
T ss_pred ceEEEEEEc-CCC--cEEEEEecCC--CCCCcEeCCceeecCCC-CHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC
Confidence 678887776 445 8999999865 46799999999999999 99999999999999999988888877643322122
Q ss_pred cee----eeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031 148 LRV----VPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184 (259)
Q Consensus 148 ~~v----~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell 184 (259)
..+ ..|++.+... ....+.+|+.++.|++++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 76 MEYDTLDLFFVCQVDDK---PIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred ceeEEEEEEEEEEeCCC---CCcCChHHhheeEEecHHHCC
Confidence 211 2344554332 234567899999999999985
No 11
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.74 E-value=6.6e-18 Score=135.58 Aligned_cols=114 Identities=24% Similarity=0.253 Sum_probs=84.1
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL 147 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~ 147 (259)
.+|.+++++. ++ ++||++|... ...++.|+||||++|.|| ++.+||+||++||||+....+..++.+........
T Consensus 3 ~~v~v~~~~~-~~--~iLl~~~~~~-~~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd03424 3 DAVAVLPYDD-DG--KVVLVRQYRP-PVGGWLLELPAGLIDPGE-DPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSD 77 (137)
T ss_pred CEEEEEEEcC-CC--eEEEEEeeec-CCCCEEEEeCCccCCCCC-CHHHHHHHHHHHHHCCCccceEEEeeEecCCcccC
Confidence 4666666663 35 8999887654 245789999999999999 99999999999999999987777776543322233
Q ss_pred ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
..++.|++...... ..+..+++|+.++.|++++++.+.-
T Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 78 ERIHLFLAEDLSPG-EEGLLDEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred ccEEEEEEEccccc-ccCCCCCCCeeEEEEecHHHHHHHH
Confidence 45666776655432 1135677899999999999998643
No 12
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=1.4e-17 Score=130.55 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=75.8
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHhh-
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLSK- 145 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~~- 145 (259)
||.+++++ +| +|||++|... +.++|.|+||||+++.|| ++.+||.||++|||||.+. .+..++.+......
T Consensus 2 ~v~~vi~~--~~--~vLL~~r~~~-~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 75 (120)
T cd04683 2 AVYVLLRR--DD--EVLLQRRANT-GYMDGQWALPAGHLEKGE-DAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI 75 (120)
T ss_pred cEEEEEEE--CC--EEEEEEccCC-CCCCCeEeCCccccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC
Confidence 56665665 24 8999999865 345899999999999999 9999999999999999876 55566654433221
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.......|.+..... .....+++|+.++.|+|++++...
T Consensus 76 ~~~~~~~f~~~~~~~--~~~~~~~~e~~~~~W~~~~~l~~~ 114 (120)
T cd04683 76 ESRIGLFFTVRRWSG--EPRNCEPDKCAELRWFPLDALPDD 114 (120)
T ss_pred ceEEEEEEEEEeecC--ccccCCCCcEeeEEEEchHHCcch
Confidence 112222233322211 111235678999999999998754
No 13
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=9.4e-18 Score=133.24 Aligned_cols=110 Identities=24% Similarity=0.241 Sum_probs=76.2
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehhhhHhh
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIEPFLSK 145 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~~~~~~ 145 (259)
+|.+++++ ++| +|||++|+..+..++|.|+|| ||+++.|| ++ +||+||++||||+++... ..++.+.... .
T Consensus 2 ~v~v~~~~-~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE-~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~-~ 75 (127)
T cd04693 2 VVHVCIFN-SKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAGE-TS-TAAEREVKEELGLELDFSELRPLFRYFFEA-E 75 (127)
T ss_pred eEEEEEEe-CCC--eEEEEEccCCCCCCCCcccccCCCcCCCCC-CH-HHHHHHHHHHhCCCcChhhcEEEEEEEeec-C
Confidence 56666666 345 899999998877789999998 99999999 99 999999999999987633 3333322111 1
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
+.... +++.... ......++.+|+.++.|++++++.+.-
T Consensus 76 -~~~~~-~~~~~~~-~~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04693 76 -GFDDY-YLFYADV-EIGKLILQKEEVDEVKFVSKDEIDGLI 114 (127)
T ss_pred -CeEEE-EEEEecC-cccccccCHHHhhhEEEeCHHHHHHHH
Confidence 22111 1222221 122345677899999999999997643
No 14
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.72 E-value=1.4e-17 Score=133.61 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=81.1
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL 148 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~ 148 (259)
+|+++++++ ++ +|||++|... .+|.|+||||+++.|| ++.+||+||++|||||....+..++....... ..
T Consensus 2 ~v~i~l~~~-~~--~vLL~~r~~~---~~~~w~lPgG~ie~gE-t~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~ 72 (131)
T cd03429 2 AVIVLVIDG-GD--RILLARQPRF---PPGMYSLLAGFVEPGE-SLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP--SS 72 (131)
T ss_pred eEEEEEEeC-CC--EEEEEEecCC---CCCcCcCCcccccCCC-CHHHHHhhhhhhccCceeeeeEEEeecCCCCC--ce
Confidence 577777663 34 8999998753 3789999999999999 99999999999999999988888776432211 22
Q ss_pred eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.++.|++.+.. .....+++|+.++.|+|++++.+.
T Consensus 73 ~~~~f~~~~~~---~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 73 LMLGFTAEADS---GEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEEEEEcC---CcccCCchhhhccEeecHHHHhhc
Confidence 34456666543 234567789999999999998875
No 15
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=2.8e-17 Score=130.38 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=77.4
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL 147 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~ 147 (259)
.+|.+++++ .++ +|||++|... ++|.|.||||++|.|| |+.+||+||++||||+.......++..........
T Consensus 3 ~~~~~~v~~-~~~--~vLl~~r~~~---~~~~w~~PGG~ve~gE-t~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 75 (127)
T cd04670 3 VGVGGLVLN-EKN--EVLVVQERNK---TPNGWKLPGGLVDPGE-DIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFG 75 (127)
T ss_pred eEEEEEEEc-CCC--eEEEEEccCC---CCCcEECCCccCCCCC-CHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcC
Confidence 345555555 334 8999987653 6799999999999999 99999999999999999876666654322111112
Q ss_pred ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.....|++.+... ...+..+++|+.++.|++++++.+..
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 76 KSDLYFICRLKPL-SFDINFDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred ceeEEEEEEEccC-cCcCCCChhhhheeEEEcHHHHhcch
Confidence 2223344444322 22345567899999999999997643
No 16
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=2.9e-17 Score=134.18 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=80.8
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce----eeeeehhhhH
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV----DVVTVIEPFL 143 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i----~~l~~l~~~~ 143 (259)
++|.|++++ .++ +|||+||+..+..++|.|+||||+++++| ++.+||+||+.||+|+.+... .+++.....+
T Consensus 2 ~~v~viv~~-~~~--~vLl~rr~~~~~~~~g~w~~PgG~v~~~E-~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~ 77 (143)
T cd04694 2 VGVAVLLQS-SDQ--KLLLTRRASSLRIFPNVWVPPGGHVELGE-NLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVY 77 (143)
T ss_pred cEEEEEEEc-CCC--EEEEEEECCCCCCCCCeEECcccccCCCC-CHHHHHHHHHHHHHCCCccccccceeEEeeecccc
Confidence 466676666 345 89999999886689999999999999999 999999999999999987653 4555443221
Q ss_pred hh---h----cceeeeEeeEeecc----ccCCCCCCccchhhhcccchhhhccc
Q 025031 144 SK---Y----LLRVVPVIGILHNR----KAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 ~~---~----~~~v~~~v~~~~~~----~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. . ...+..|++..... ....+.++++|++++.|++++++..-
T Consensus 78 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 78 PPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred ccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 10 0 11233333322211 11123567799999999999998753
No 17
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.71 E-value=2.6e-17 Score=133.17 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=71.9
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee-ehh-h----h
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT-VIE-P----F 142 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~-~l~-~----~ 142 (259)
+|++.++.+ ++ +|||+||+..++.++|.|+||||++|+|| |+.+||+||++|||||.+....+.. .+. . .
T Consensus 5 ~~~~~ii~~-~~--~vLl~~R~~~~~~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (141)
T PRK15472 5 TIVCPLIQN-DG--AYLLCKMADDRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLLLTEITPWTFRDDIRTKT 80 (141)
T ss_pred eEEEEEEec-CC--EEEEEEecccCCCCCCceeCCcccCCCCC-CHHHHHHHHHHHHHCCceeeeeeccccccccceeEE
Confidence 344434442 35 89999999877789999999999999999 9999999999999999764332211 000 0 0
Q ss_pred H-hhh--cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 143 L-SKY--LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 143 ~-~~~--~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
+ ... ...+..+++.... ......++ +|+.++.|++++++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~E~~~~~w~~~~el~~l~ 126 (141)
T PRK15472 81 YADGRKEEIYMIYLIFDCVS-ANRDVKIN-EEFQDYAWVKPEDLVHYD 126 (141)
T ss_pred ecCCCceeEEEEEEEEEeec-CCCcccCC-hhhheEEEccHHHhcccc
Confidence 0 001 0111111222211 11222333 799999999999997643
No 18
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=4.4e-17 Score=129.48 Aligned_cols=114 Identities=26% Similarity=0.267 Sum_probs=81.6
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL 147 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~ 147 (259)
.+|.++|++. +| +|||++|... ..+|.|.+|||+++.|| ++.+||.||++||||+++..+..++.........+
T Consensus 3 ~~v~~ii~~~-~~--~iLl~~r~~~--~~~~~w~~PGG~ve~gE-t~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~ 76 (129)
T cd04678 3 VGVGVFVLNP-KG--KVLLGKRKGS--HGAGTWALPGGHLEFGE-SFEECAAREVLEETGLHIENVQFLTVTNDVFEEEG 76 (129)
T ss_pred eEEEEEEECC-CC--eEEEEeccCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCC
Confidence 5666767763 45 8999999864 56799999999999999 99999999999999999888777776543322122
Q ss_pred --ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 148 --LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 148 --~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.....|.+.+..........+++|+.++.|++++++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (129)
T cd04678 77 KHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD 118 (129)
T ss_pred cEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence 2233344444332111111256789999999999998753
No 19
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.71 E-value=3e-17 Score=136.35 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=78.1
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHhh
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLSK 145 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~~ 145 (259)
.+|.+++.+ .+| +|||+||+.. +.+|+|+||||++|.|| |+.+||+||++|||||.+. ...+++....++..
T Consensus 18 ~~v~~vI~~-~~g--~VLL~kR~~~--~~~g~W~lPGG~VE~GE-t~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~ 91 (159)
T PRK15434 18 ISLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD 91 (159)
T ss_pred EEEEEEEEC-CCC--EEEEEEccCC--CCCCcEECCceecCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEeeccc
Confidence 456665554 345 8999999853 56899999999999999 9999999999999999864 23455543322211
Q ss_pred --------hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 146 --------YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 146 --------~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
..+.+..|.+.+.. ..+.+.++|+.++.|++++++.....
T Consensus 92 ~~~~~~~~~~~i~~~f~~~~~~---g~~~~~~~E~~~~~W~~~~el~~~~~ 139 (159)
T PRK15434 92 NFSGTDFTTHYVVLGFRLRVAE---EDLLLPDEQHDDYRWLTPDALLASDN 139 (159)
T ss_pred ccCCCccceEEEEEEEEEEecC---CcccCChHHeeEEEEEeHHHhhhccc
Confidence 11233344444332 23445667999999999999987544
No 20
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.70 E-value=3.5e-17 Score=130.18 Aligned_cols=109 Identities=27% Similarity=0.278 Sum_probs=79.2
Q ss_pred EEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhh--hH--hh
Q 025031 70 VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEP--FL--SK 145 (259)
Q Consensus 70 Vli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~--~~--~~ 145 (259)
|.|++++.. ++.+|||++|+.. ++|.|.+|||+++.|| ++.+||+||++|||||.+..+..+..... ++ ..
T Consensus 4 ~~v~~~~~~-~~~~vLL~~r~~~---~~~~w~~PgG~ve~~E-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04664 4 VLVVPYRLT-GEGRVLLLRRSDK---YAGFWQSVTGGIEDGE-SPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD 78 (129)
T ss_pred EEEEEEEeC-CCCEEEEEEeCCC---CCCcccccCcccCCCC-CHHHHHHHHHHHHHCCChhheEEEeecccccccccCC
Confidence 445555531 1238999999875 7899999999999999 99999999999999999877777665542 11 11
Q ss_pred --hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 --YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 --~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....++.|++.+.... ....++|+.++.|++++++.+.
T Consensus 79 ~~~~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~ 118 (129)
T cd04664 79 NGRVWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAAL 118 (129)
T ss_pred CceEEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHHH
Confidence 2244566776655421 1234579999999999998753
No 21
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.70 E-value=4.7e-17 Score=132.84 Aligned_cols=112 Identities=26% Similarity=0.338 Sum_probs=80.6
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh-----
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF----- 142 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~----- 142 (259)
.+|.+++++ .++ +|||++|+... |.|+||||++|+|| ++.+||+||++||||+.+....+++.....
T Consensus 4 ~~v~~ii~~-~~~--~vLL~~r~~~~----~~W~~PgG~~e~gE-~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~ 75 (147)
T cd03671 4 PNVGVVLFN-EDG--KVFVGRRIDTP----GAWQFPQGGIDEGE-DPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDL 75 (147)
T ss_pred ceEEEEEEe-CCC--EEEEEEEcCCC----CCEECCcCCCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeC
Confidence 455565665 345 89999998762 89999999999999 999999999999999998888887764211
Q ss_pred Hh----------hhcceeeeEeeEeecc-ccCCCCC-Cccchhhhcccchhhhcccc
Q 025031 143 LS----------KYLLRVVPVIGILHNR-KAFKPTP-NPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 143 ~~----------~~~~~v~~~v~~~~~~-~~~~~~~-~~~Ev~~v~wvpl~ell~~~ 187 (259)
.. ..+..++.|++.+... ....... +.+|+.++.|+|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~ 132 (147)
T cd03671 76 PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI 132 (147)
T ss_pred hhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence 10 0122356666666541 1222223 25799999999999998754
No 22
>PLN02325 nudix hydrolase
Probab=99.70 E-value=5.5e-17 Score=132.49 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=80.6
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK- 145 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~- 145 (259)
+.+|.++++++ + +|||++|+.. ...|.|++|||++|.|| |+.+||+||++||||+.+...++++..+.....
T Consensus 9 ~~~v~~vi~~~--~--~vLL~rr~~~--~~~g~W~lPGG~ve~gE-s~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~ 81 (144)
T PLN02325 9 RVAVVVFLLKG--N--SVLLGRRRSS--IGDSTFALPGGHLEFGE-SFEECAAREVKEETGLEIEKIELLTVTNNVFLEE 81 (144)
T ss_pred eEEEEEEEEcC--C--EEEEEEecCC--CCCCeEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence 45555555552 4 8999999864 44689999999999999 999999999999999999988888876543211
Q ss_pred ---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 146 ---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 146 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
..+....|.+.+.+........+++|+.++.|+++++|....
T Consensus 82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~ 126 (144)
T PLN02325 82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPL 126 (144)
T ss_pred CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhh
Confidence 112222334444332211223456778889999999997643
No 23
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=3.4e-17 Score=128.22 Aligned_cols=108 Identities=28% Similarity=0.415 Sum_probs=78.1
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh---
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--- 145 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--- 145 (259)
+|.++++++ + +|||++|... .++|.|.||||+++.|| ++++||.||++||||+.+.....++.+......
T Consensus 2 ~v~~ii~~~--~--~vLl~~r~~~--~~~~~w~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 74 (122)
T cd04673 2 AVGAVVFRG--G--RVLLVRRANP--PDAGLWSFPGGKVELGE-TLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAG 74 (122)
T ss_pred cEEEEEEEC--C--EEEEEEEcCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCC
Confidence 444555553 4 8999999864 56899999999999999 999999999999999998777777766544311
Q ss_pred ---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 146 ---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 146 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
....++.|++..... .. .+.+|+.++.|++++++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~---~~-~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 75 RVEFHYVLIDFLCRYLGG---EP-VAGDDALDARWVPLDELAALS 115 (122)
T ss_pred ccceEEEEEEEEEEeCCC---cc-cCCcccceeEEECHHHHhhCc
Confidence 122333444443321 22 345799999999999998643
No 24
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.70 E-value=3.5e-17 Score=138.13 Aligned_cols=122 Identities=25% Similarity=0.302 Sum_probs=86.8
Q ss_pred ccCccceeEEEEEe-ecCCCceEEEEeeccccccccccee-ecCCCCCCCCCCCchhhhhHHHHHhhCCCCccee---ee
Q 025031 62 TFRPKKAAVLVCLF-EGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETATREAKEEIGLDPSLVD---VV 136 (259)
Q Consensus 62 ~~~~r~aaVli~l~-~~~~g~~~vLL~kRs~~~~~~~G~w-sfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~---~l 136 (259)
..+..+.||.|.++ .+.+++.+|+++||+.++..+||.| .+|||+++.|| ++.+||+||++|||||+...+. .+
T Consensus 27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE-~~~~aA~REl~EE~Gl~~~~~~~l~~~ 105 (180)
T cd03676 27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGE-GPEETLVKECDEEAGLPEDLVRQLKPV 105 (180)
T ss_pred cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCC-CHHHHHHHHHHHHhCCCHHHHhhceec
Confidence 44677788887433 3333245999999999999999999 58999999999 9999999999999999877643 33
Q ss_pred eehhhhHh--hh---cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 137 TVIEPFLS--KY---LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 137 ~~l~~~~~--~~---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
+.+..... .. ...++.|.+.+.. ...+.++++||.++.|++++++.+.
T Consensus 106 g~~~~~~~~~~~~~~~e~~~~f~~~~~~--~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 106 GVVSYLREGEAGGLQPEVEYVYDLELPP--DFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred cEEEEEEEcCCCcEeeeEEEEEEEEcCC--CCeeCCCCCcEeEEEEECHHHHHHH
Confidence 33322221 11 1223444444322 2234668899999999999999864
No 25
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.70 E-value=3.9e-17 Score=129.25 Aligned_cols=110 Identities=29% Similarity=0.289 Sum_probs=77.7
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh---
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS--- 144 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~--- 144 (259)
+|..|++.. .+++.+|||++|... |.|+||||+++.|| ++.+||.||++||||+.+..+..++.......
T Consensus 3 ~a~~ii~~~-~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 75 (131)
T cd03673 3 AAGGVVFRG-SDGGIEVLLIHRPRG-----DDWSLPKGKLEPGE-TPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSG 75 (131)
T ss_pred eEEEEEEEc-cCCCeEEEEEEcCCC-----CcccCCCCccCCCC-CHHHHHHHHHhhhhCCceEecceEEEEEEeccCCC
Confidence 344444433 333459999999754 79999999999999 99999999999999999888777776543322
Q ss_pred -hhcceeeeEeeEeeccccCCCCC-Cccchhhhcccchhhhcccc
Q 025031 145 -KYLLRVVPVIGILHNRKAFKPTP-NPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 145 -~~~~~v~~~v~~~~~~~~~~~~~-~~~Ev~~v~wvpl~ell~~~ 187 (259)
.....++.|++..... .... +.+|+.++.|+|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~~ 117 (131)
T cd03673 76 KRVHKTVHWWLMRALGG---EFTPQPDEEVDEVRWLPPDEARDRL 117 (131)
T ss_pred CCcceEEEEEEEEEcCC---CcccCCCCcEEEEEEcCHHHHHHHc
Confidence 1223344455444322 2222 56899999999999997543
No 26
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.69 E-value=5.1e-17 Score=132.58 Aligned_cols=110 Identities=22% Similarity=0.272 Sum_probs=79.0
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehhhhHh-
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIEPFLS- 144 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~~~~~- 144 (259)
.+|.+++++ .+| +|||++|... +++|.|+||||++|.|| |+.+||+||++||||+.+... .+++.+.....
T Consensus 13 v~v~~vI~~-~~g--~vLl~~R~~~--p~~g~w~lPGG~ve~gE-s~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~ 86 (144)
T cd03430 13 VSIDLIVEN-EDG--QYLLGKRTNR--PAQGYWFVPGGRIRKNE-TLTEAFERIAKDELGLEFLISDAELLGVFEHFYDD 86 (144)
T ss_pred EEEEEEEEe-CCC--eEEEEEccCC--CCCCcEECCCceecCCC-CHHHHHHHHHHHHHCCCcccccceEEEEEEEEecc
Confidence 466666665 345 8999999864 57899999999999999 999999999999999988755 66665543221
Q ss_pred ---hh----cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 145 ---KY----LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 145 ---~~----~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. ......|.+.+.. ......++|+.++.|++++++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 87 NFFGDDFSTHYVVLGYVLKLSS---NELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred ccccCCCccEEEEEEEEEEEcC---CcccCCchhccEeEEecHHHHhcC
Confidence 11 1222334444332 122456789999999999999864
No 27
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=4.5e-17 Score=127.30 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=77.3
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc-ceeeeeehhhhHhhhc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS-LVDVVTVIEPFLSKYL 147 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~-~i~~l~~l~~~~~~~~ 147 (259)
+|.+++++ .+| +|||++|+.. +.|.||||+++.|| |+.+||+||++||||+.+. ....++.+........
T Consensus 2 ~~~~~i~~-~~~--~vLL~~r~~~-----~~w~~PgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~ 72 (120)
T cd04680 2 GARAVVTD-ADG--RVLLVRHTYG-----PGWYLPGGGLERGE-TFAEAARRELLEELGIRLAVVAELLGVYYHSASGSW 72 (120)
T ss_pred ceEEEEEC-CCC--eEEEEEECCC-----CcEeCCCCcCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEecCCCCCc
Confidence 45555565 345 8999998754 38999999999999 9999999999999999998 7777777654432222
Q ss_pred ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
..++.|.+..... ....+.+|+.++.|+|++++.+.
T Consensus 73 ~~~~~f~~~~~~~---~~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 73 DHVIVFRARADTQ---PVIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred eEEEEEEecccCC---CccCCcccEEEEEEECHHHCccc
Confidence 3344444443321 11346689999999999999764
No 28
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.69 E-value=7.3e-17 Score=127.21 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=77.6
Q ss_pred EEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-hh--
Q 025031 70 VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-KY-- 146 (259)
Q Consensus 70 Vli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~~-- 146 (259)
|..+++++ + +|||++|+.. .++|.|+||||++|.|| ++.+||+||++||||+....+..++....... ..
T Consensus 3 ~~~ii~~~--~--~vLl~~~~~~--~~~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd04684 3 AYAVIPRD--G--KLLLIQKNGG--PYEGRWDLPGGGIEPGE-SPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD 75 (128)
T ss_pred eEEEEEeC--C--EEEEEEccCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC
Confidence 44444552 4 8999999876 37899999999999999 99999999999999999888777777554321 11
Q ss_pred ---cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 147 ---LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 147 ---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....+.|.+....... ....+.+|+.++.|+|++++...
T Consensus 76 ~~~~~~~~~f~~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 76 YDAHHLCVFYDARVVGGAL-PVQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred eeccEEEEEEEEEEecCcc-ccCCCCCCceeeEEECHHHhhcc
Confidence 1223344444443211 01345578899999999999754
No 29
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.68 E-value=5.5e-17 Score=134.41 Aligned_cols=117 Identities=24% Similarity=0.212 Sum_probs=82.7
Q ss_pred cCccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCccee--eeeeh
Q 025031 63 FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVD--VVTVI 139 (259)
Q Consensus 63 ~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~--~l~~l 139 (259)
.+..+.+|.+++++. +| +|||+||+..+..+||.|++| ||+++.|| + +||+||++|||||.+.... .++..
T Consensus 23 ~g~~h~~v~v~v~~~-~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-~--eaa~REl~EE~Gl~~~~~~l~~~~~~ 96 (158)
T TIGR02150 23 ETPLHRAFSVFLFNE-EG--QLLLQRRALSKITWPGVWTNSCCSHPLPGE-L--EAAIRRLREELGIPADDVPLTVLPRF 96 (158)
T ss_pred CCCeEEEEEEEEEcC-CC--eEEEEeccCCCcCCCCCccccccCCCCccc-H--HHHHHHHHHHHCCCccccceEEcceE
Confidence 366788888888873 45 899999999888899999997 89999999 4 9999999999999887654 23322
Q ss_pred hhhHh-hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 140 EPFLS-KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 140 ~~~~~-~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
..... ..+.....+++.+.... .+.++++|++++.|++++++.+.-
T Consensus 97 ~~~~~~~~g~~~~~~~f~~~~~~--~~~~~~~Ev~~~~W~~~~el~~~~ 143 (158)
T TIGR02150 97 SYRARDAWGEHELCPVFFARAPV--PLNPNPEEVAEYRWVSLEELKEIL 143 (158)
T ss_pred EEEEecCCCcEEEEEEEEEecCC--cccCChhHeeeEEEeCHHHHHHHH
Confidence 21111 11222222333322221 345677899999999999987643
No 30
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.68 E-value=1.5e-16 Score=130.21 Aligned_cols=112 Identities=26% Similarity=0.282 Sum_probs=80.2
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
...+|.+++..+ + +|||+||+.. ++.|.|+||||++|.|| |+++||+||++|||||++..+++++.++.....
T Consensus 9 p~~~v~~~i~~~--~--~iLLvrR~~~--p~~g~WalPGG~ve~GE-t~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd 81 (145)
T COG1051 9 PLVAVGALIVRN--G--RILLVRRANE--PGAGYWALPGGFVEIGE-TLEEAARRELKEETGLRVRVLELLAVFDDPGRD 81 (145)
T ss_pred cceeeeEEEEeC--C--EEEEEEecCC--CCCCcEeCCCccCCCCC-CHHHHHHHHHHHHhCCcccceeEEEEecCCCCC
Confidence 445666665553 3 8999999987 78899999999999999 999999999999999998888888887654321
Q ss_pred -hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 146 -YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 146 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
.+.++..++........ ....+.++...+.|++++++..
T Consensus 82 ~r~~~v~~~~~~~~~~g~-~~~~~~~d~~~~~~~~~~~l~~ 121 (145)
T COG1051 82 PRGHHVSFLFFAAEPEGE-LLAGDGDDAAEVGWFPLDELPE 121 (145)
T ss_pred CceeEEEEEEEEEecCCC-cccCChhhHhhcceecHhHccc
Confidence 22222222221111111 1123335888999999999985
No 31
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.68 E-value=5.6e-17 Score=135.11 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=82.2
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCcceeee-eehhhhHh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVDVV-TVIEPFLS 144 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l-~~l~~~~~ 144 (259)
+.+|.+++++ .++ +|||+||+..+..+||.|++| ||++|+|| ++++||+||++|||||.+.....+ +.+.....
T Consensus 30 ~~~v~v~i~~-~~~--~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GE-t~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~ 105 (165)
T cd02885 30 HRAFSVFLFN-SKG--RLLLQRRALSKYTFPGLWTNTCCSHPLPGE-GVKDAAQRRLREELGITGDLLELVLPRFRYRAP 105 (165)
T ss_pred eeEEEEEEEc-CCC--cEEEEeccCCCccCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccchhhccceEEEEEE
Confidence 7788887776 345 899999998877899999996 89999999 999999999999999998766654 33211110
Q ss_pred h-h---cc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 145 K-Y---LL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 145 ~-~---~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
. . .. ..+.|.+... ....++++|+.++.|+|++++.+.-.
T Consensus 106 ~~~~~~~~~i~~~f~~~~~----~~~~~~~~Ev~~~~w~~~~el~~~~~ 150 (165)
T cd02885 106 DDGGLVEHEIDHVFFARAD----VTLIPNPDEVSEYRWVSLEDLKELVA 150 (165)
T ss_pred cCCCceeeEEEEEEEEEeC----CCCCCCccceeEEEEECHHHHHHHHH
Confidence 0 1 11 1223333322 12345778999999999999986543
No 32
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.68 E-value=7.9e-17 Score=136.32 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=81.9
Q ss_pred CccceeEEEEEeecCCCceEEEEeeccccccccccee-ecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF 142 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~w-sfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~ 142 (259)
+.++.+|.+++++ .+| +|||++|+.....++|.| .+|||++++|| |+.+||+||++|||||....+..++.+..
T Consensus 34 ~~~h~~~~v~v~~-~~g--~iLL~~R~~~~~~~pg~~~~~pGG~ve~GE-s~~eAA~REL~EEtGl~~~~~~~~~~~~~- 108 (180)
T PRK15393 34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQAGE-QLLESARREAEEELGIAGVPFAEHGQFYF- 108 (180)
T ss_pred CCceEEEEEEEEC-CCC--eEEEEEeCCCCCCCCCcccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCccceeceeEEe-
Confidence 4466777777776 455 899999987766778987 58999999999 99999999999999998766655554321
Q ss_pred HhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 143 LSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 143 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
......++..++..... ....++++|+.++.|++++++.+.
T Consensus 109 -~~~~~~~~~~~f~~~~~--~~~~~~~~E~~~~~W~~~~el~~~ 149 (180)
T PRK15393 109 -EDENCRVWGALFSCVSH--GPFALQEEEVSEVCWMTPEEITAR 149 (180)
T ss_pred -cCCCceEEEEEEEEEeC--CCCCCChHHeeEEEECCHHHHhhh
Confidence 11222222222222211 234567899999999999999864
No 33
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.68 E-value=1.2e-16 Score=130.30 Aligned_cols=110 Identities=19% Similarity=0.107 Sum_probs=74.3
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC--cceeeeeehh---
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP--SLVDVVTVIE--- 140 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~--~~i~~l~~l~--- 140 (259)
.+.+|.+++++ .+| +|||++|... +|.|++|||++|.|| |+.+||+||++|||||.+ ..+.+++...
T Consensus 6 ~~~~v~~vi~~-~~~--~vLl~~r~~~----~~~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 77 (148)
T PRK09438 6 RPVSVLVVIYT-PDL--GVLMLQRADD----PDFWQSVTGSLEEGE-TPAQTAIREVKEETGIDVLAEQLTLIDCQRSIE 77 (148)
T ss_pred CceEEEEEEEe-CCC--eEEEEEecCC----CCcEeCCcccCCCCC-CHHHHHHHHHHHHhCcCccccceeecccccccc
Confidence 34567777776 345 7999988643 589999999999999 999999999999999988 4444332110
Q ss_pred h-hH-------hh--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 141 P-FL-------SK--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 141 ~-~~-------~~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
. +. .. .....+.|++.+.. .. .++.+|+.++.|++++++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~--~~~~~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 78 YEIFPHWRHRYAPGVTRNTEHWFCLALPH--ER--PVVLTEHLAYQWLDAREAAALT 130 (148)
T ss_pred cccchhhhhccccccCCceeEEEEEecCC--CC--ccccCcccceeeCCHHHHHHHh
Confidence 0 00 11 12234445554332 11 2344699999999999997643
No 34
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=9.8e-17 Score=128.35 Aligned_cols=110 Identities=23% Similarity=0.247 Sum_probs=75.1
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh--
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY-- 146 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~-- 146 (259)
+|++.... .++ +|||++|+.. ++|.|++|||+++.|| |+.+||+||++|||||.+..+...+.+..++...
T Consensus 4 ~v~~~~~~-~~~--~vLl~~r~~~---~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (131)
T cd04695 4 GVLLRSLD-KET--KVLLLKRVKT---LGGFWCHVAGGVEAGE-TAWQAALRELKEETGISLPELYNADYLEQFYEANDN 76 (131)
T ss_pred EEEEEEcC-CCC--EEEEEEecCC---CCCcEECCcccccCCC-CHHHHHHHHHHHHhCCCccccccccceeeEeecCCc
Confidence 44444443 233 8999999875 6799999999999999 9999999999999999887654333222222211
Q ss_pred -cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 147 -LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 147 -~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
...+..|++.+.... ...++ +|+.++.|++++++.+...
T Consensus 77 ~~~~~~~f~~~~~~~~--~~~~~-~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 77 RILMAPVFVGFVPPHQ--EVVLN-HEHTEYRWCSFAEALELAP 116 (131)
T ss_pred eEEEEEEEEEEecCCC--ccccC-chhcccEecCHHHHHHhcC
Confidence 122344555543321 12233 7999999999999987544
No 35
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.67 E-value=1.3e-16 Score=129.76 Aligned_cols=114 Identities=19% Similarity=0.194 Sum_probs=79.5
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK- 145 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~- 145 (259)
..||.+++++ .++ +|||++|... .++|.|+||||++++|| |+.+||+||++||||+.+.....++........
T Consensus 13 ~~av~~vv~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 86 (142)
T cd04700 13 ARAAGAVILN-ERN--DVLLVQEKGG--PKKGLWHIPSGAVEDGE-FPQDAAVREACEETGLRVRPVKFLGTYLGRFDDG 86 (142)
T ss_pred eeeEEEEEEe-CCC--cEEEEEEcCC--CCCCeEECCceecCCCC-CHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCC
Confidence 3455555565 344 7899887643 46799999999999999 999999999999999998888777764322211
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
.....+.|++.+... ...+. ..+|+.++.|++++++.+...
T Consensus 87 ~~~~~~~f~~~~~~~-~~~~~-~~~E~~~~~w~~~~el~~~~~ 127 (142)
T cd04700 87 VLVLRHVWLAEPEGQ-TLAPK-FTDEIAEASFFSREDVAQLYA 127 (142)
T ss_pred cEEEEEEEEEEecCC-ccccC-CCCCEEEEEEECHHHhhhccc
Confidence 112234455555332 22222 237999999999999987543
No 36
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1.5e-16 Score=126.48 Aligned_cols=113 Identities=27% Similarity=0.261 Sum_probs=76.1
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh--H
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF--L 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~--~ 143 (259)
...+|.+++++. ++ +|||++|+.. |.|+||||++++|| |+.+||+||++||||+.......++.+... +
T Consensus 6 ~~~~~~~~v~~~-~~--~vLL~~r~~~-----~~w~~PgG~v~~gE-t~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~ 76 (132)
T cd04677 6 ILVGAGVILLNE-QG--EVLLQKRSDT-----GDWGLPGGAMELGE-SLEETARRELKEETGLEVEELELLGVYSGKEFY 76 (132)
T ss_pred cccceEEEEEeC-CC--CEEEEEecCC-----CcEECCeeecCCCC-CHHHHHHHHHHHHhCCeeeeeEEEEEecCCcee
Confidence 445666666663 34 8999998764 78999999999999 999999999999999998887777654211 1
Q ss_pred h--hhcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 144 S--KYLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 144 ~--~~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
. ..+. .....++++.......+..+.+|+.++.|+|++++.+.-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~ 123 (132)
T cd04677 77 VKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELI 123 (132)
T ss_pred ecCCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccch
Confidence 1 1111 111111222211122234566899999999999997643
No 37
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.67 E-value=2e-16 Score=127.88 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=73.0
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeee------hh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV------IE 140 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~------l~ 140 (259)
+.+|.+++++++.+ +|||++|+.. |.|++|||++|+|| ++.+||.||++|||||.+..+..++. +.
T Consensus 2 ~~~~~~~v~~~~~~--~vLLv~r~~~-----~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 73 (138)
T cd03674 2 HFTASAFVVNPDRG--KVLLTHHRKL-----GSWLQPGGHIDPDE-SLLEAALRELREETGIELLGLRPLSVLVDLDVHP 73 (138)
T ss_pred cEEEEEEEEeCCCC--eEEEEEEcCC-----CcEECCceecCCCC-CHHHHHHHHHHHHHCCCcccceeccccccceeEe
Confidence 44666666764224 8999998753 78999999999999 99999999999999998766554331 11
Q ss_pred hhHhhh-----cc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 141 PFLSKY-----LL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 141 ~~~~~~-----~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.+.... .. ....|++.+... ...+ ++.+|+.++.|+|++++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 74 IDGHPKRGVPGHLHLDLRFLAVAPAD-DVAP-PKSDESDAVRWFPLDELASL 123 (138)
T ss_pred ecCCCCCCCCCcEEEEEEEEEEccCc-cccC-CCCCcccccEEEcHHHhhhc
Confidence 111100 11 112344443321 1111 36689999999999999653
No 38
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.67 E-value=3.9e-17 Score=129.07 Aligned_cols=117 Identities=32% Similarity=0.371 Sum_probs=87.0
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY 146 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~ 146 (259)
+.+|.+++++ .++ +|||++|+.....++|.|.+|||+++.+| |+.+||+||+.||||+.......++.........
T Consensus 2 ~~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E-~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~ 77 (134)
T PF00293_consen 2 RRAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPGE-SPEEAARRELKEETGLDVSPLELLGLFSYPSPSG 77 (134)
T ss_dssp EEEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTTS-HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred CCEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcCC-chhhhHHhhhhhcccceecccccceeeeecccCC
Confidence 4567776776 345 99999999875568899999999999999 9999999999999999986666555543332221
Q ss_pred ---cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 147 ---LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 147 ---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
+..++.|++.+.... .....+.+|+.++.|++++++.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~~ 121 (134)
T PF00293_consen 78 DPEGEIVIFFIAELPSEQ-SEIQPQDEEISEVKWVPPDELLELLL 121 (134)
T ss_dssp ESSEEEEEEEEEEEEEEE-SECHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred CcccEEEEEEEEEEeCCc-cccCCCCccEEEEEEEEHHHhhhchh
Confidence 245666666665532 12344555999999999999988654
No 39
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.66 E-value=2.9e-16 Score=125.84 Aligned_cols=97 Identities=25% Similarity=0.230 Sum_probs=72.1
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--hcceeeeEeeEeecc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--YLLRVVPVIGILHNR 160 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~~~~v~~~v~~~~~~ 160 (259)
+|||++|+... ++|.|++|||++|.|| ++.+||+||++||||+......+++.+...... ....++.|++.....
T Consensus 13 ~vLL~~r~~~~--~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 89 (137)
T cd03427 13 KVLLLNRKKGP--GWGGWNGPGGKVEPGE-TPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG 89 (137)
T ss_pred EEEEEEecCCC--CCCeEeCCceeCCCCC-CHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc
Confidence 89999999763 7899999999999999 999999999999999999888887776533222 223344444433221
Q ss_pred ccCCCCCCccchhhhcccchhhhccc
Q 025031 161 KAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 161 ~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.+. +.+|..++.|++++++.+.
T Consensus 90 ---~~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 90 ---EPL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred ---ccC-CCCccccceEEcHhhcccc
Confidence 222 3456678999999998754
No 40
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.66 E-value=1.2e-16 Score=126.87 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=78.1
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH---
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL--- 143 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~--- 143 (259)
++|.+|++.. ++++.+|||++|+. |.|+||||++++|| |+.+||+||++||||+....+..++.+....
T Consensus 3 ~~~g~vi~~~-~~~~~~vLl~~~~~------~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 74 (130)
T cd03428 3 RSAGAIIYRR-LNNEIEYLLLQASY------GHWDFPKGHVEPGE-DDLEAALRETEEETGITAEQLFIVLGFKETLNYQ 74 (130)
T ss_pred eEEEEEEEEe-cCCCceEEEEEccC------CcCcCCcCCCCCCC-CHHHHHHHHHHHHHCCChhhhhhhccceeEEEcc
Confidence 3444444444 34556899999885 78999999999999 9999999999999999988776653221111
Q ss_pred -hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 144 -SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 144 -~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
......++.|++.+... ..+.++ +|+.++.|++++++.+.-
T Consensus 75 ~~~~~~~~~~f~~~~~~~--~~~~~~-~E~~~~~W~~~~e~~~~~ 116 (130)
T cd03428 75 VRGKLKTVTYFLAELRPD--VEVKLS-EEHQDYRWLPYEEALKLL 116 (130)
T ss_pred ccCcceEEEEEEEEeCCC--Cccccc-cceeeEEeecHHHHHHHc
Confidence 12334456677766532 233445 799999999999997643
No 41
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.66 E-value=1.7e-16 Score=134.60 Aligned_cols=116 Identities=21% Similarity=0.260 Sum_probs=83.5
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCccee-eeeehhh
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVD-VVTVIEP 141 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~-~l~~l~~ 141 (259)
+..+.||.+++++ ++| +|||++|+..+..+||.|++| ||++++|| ++++||+||+.|||||++..+. +++.+..
T Consensus 31 ~~~h~av~v~i~~-~~g--~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 106 (184)
T PRK03759 31 TPLHLAFSCYLFD-ADG--RLLVTRRALSKKTWPGVWTNSCCGHPQPGE-SLEDAVIRRCREELGVEITDLELVLPDFRY 106 (184)
T ss_pred CCeeeEEEEEEEc-CCC--eEEEEEccCCCCCCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccccccccceEEE
Confidence 4567788887776 345 899999988777889999986 89999999 9999999999999999886443 2322211
Q ss_pred h-Hhhhc----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 142 F-LSKYL----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 142 ~-~~~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
. ....+ ...+.|++.... .+.++++|+.++.|+|++++.+.-
T Consensus 107 ~~~~~~~~~~~~~~~vf~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 107 RATDPNGIVENEVCPVFAARVTS----ALQPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred EEecCCCceeeEEEEEEEEEECC----CCCCChhHeeeEEEECHHHHHHHH
Confidence 1 01111 123345554432 345678899999999999997643
No 42
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=3.3e-16 Score=124.51 Aligned_cols=105 Identities=24% Similarity=0.255 Sum_probs=72.3
Q ss_pred EEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcce
Q 025031 70 VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLR 149 (259)
Q Consensus 70 Vli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~ 149 (259)
|.+++++ .++ +|||++|... .++|.|+||||++|.|| ++.+||.||++||||+.......++..... ....
T Consensus 3 ~~~vv~~-~~~--~vLl~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~ 73 (123)
T cd04671 3 VAAVILN-NQG--EVLLIQEAKR--SCRGKWYLPAGRMEPGE-TIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWF 73 (123)
T ss_pred EEEEEEc-CCC--EEEEEEecCC--CCCCeEECceeecCCCC-CHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEE
Confidence 3344444 345 8999999864 46889999999999999 999999999999999999877776653321 1222
Q ss_pred eeeEeeEeeccccCCCCCCccchhhhcccchhhh
Q 025031 150 VVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF 183 (259)
Q Consensus 150 v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el 183 (259)
.+.|.+............+..|+.++.|++++++
T Consensus 74 ~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 74 RFVFTGNITGGDLKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred EEEEEEEEeCCeEccCCCCCcceEEEEEECHHHC
Confidence 3334444332111111123467889999999999
No 43
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2.9e-16 Score=124.29 Aligned_cols=107 Identities=26% Similarity=0.312 Sum_probs=73.6
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh----
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS---- 144 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~---- 144 (259)
+|.+++++ .+| +|||+||.. ++|.|+||||+++.|| |+.+||+||++||||+++..+.+++.....+.
T Consensus 4 ~v~~~i~~-~~~--~iLL~r~~~----~~~~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 75 (125)
T cd04696 4 TVGALIYA-PDG--RILLVRTTK----WRGLWGVPGGKVEWGE-TLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFH 75 (125)
T ss_pred EEEEEEEC-CCC--CEEEEEccC----CCCcEeCCceeccCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCC
Confidence 34444555 345 799998753 4689999999999999 99999999999999999887776554322211
Q ss_pred -hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 145 -KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 145 -~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.....+..|.+.... .....+ +|+.++.|+|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~---~~~~~~-~e~~~~~W~~~~el~~~~ 115 (125)
T cd04696 76 KPAHFVLFDFFARTDG---TEVTPN-EEIVEWEWVTPEEALDYP 115 (125)
T ss_pred CccEEEEEEEEEEecC---CcccCC-cccceeEEECHHHHhcCC
Confidence 112223334444332 122333 789999999999997654
No 44
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.64 E-value=6.2e-16 Score=123.62 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=72.1
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--hcceeeeEeeEeecc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--YLLRVVPVIGILHNR 160 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~~~~v~~~v~~~~~~ 160 (259)
++||++|... ..+.|+||||++|+|| |+.+||.||++||||+++....+++........ .....+.|++.+...
T Consensus 12 ~vLlv~r~~~---~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 87 (134)
T cd03675 12 RFLLVEEETD---GGLVFNQPAGHLEPGE-SLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEH 87 (134)
T ss_pred EEEEEEEccC---CCceEECCCccCCCCC-CHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCC
Confidence 8999998764 4579999999999999 999999999999999998877777654422221 122233455555432
Q ss_pred ccCCCCCCccchhhhcccchhhhcccc
Q 025031 161 KAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 161 ~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
. .. ....+|+.++.|++++++.+..
T Consensus 88 ~-~~-~~~~~e~~~~~w~~~~el~~~~ 112 (134)
T cd03675 88 L-PD-QPLDSGIVRAHWLTLEEILALA 112 (134)
T ss_pred C-CC-CCCCCCceeeEEEeHHHHHhhh
Confidence 1 11 1234689999999999998755
No 45
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.64 E-value=7.3e-16 Score=121.46 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=72.8
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|+.. +.++|.|+||||++++|| ++.+||.||+.||+|+++.....++.+.+.++.....+..|.+....
T Consensus 17 ~vll~rR~~~-~~~~g~w~~PgG~~~~gE-~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 91 (129)
T PRK10776 17 EIFITRRAAD-AHMAGKWEFPGGKIEAGE-TPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVESWE--- 91 (129)
T ss_pred EEEEEEecCC-CCCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEEEC---
Confidence 8999999876 467899999999999999 99999999999999998776666666555454444445544443221
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. +...|+.++.|++++++...
T Consensus 92 ~~--~~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 92 GE--PWGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred Cc--cCCccCCccEEecHHHCccC
Confidence 11 23457888999999998753
No 46
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.64 E-value=6.4e-16 Score=131.19 Aligned_cols=113 Identities=21% Similarity=0.239 Sum_probs=84.0
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY 146 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~ 146 (259)
..||+|+.+. +++ +|||+++... ..+++.|+||||.+|+|| ++.+||+||++||||+.+..+..++.+....+..
T Consensus 47 ~~~v~v~~~~-~~~--~vlLvrq~r~-~~~~~~~elPaG~ve~gE-~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~ 121 (185)
T PRK11762 47 RGAVMIVPIL-DDD--TLLLIREYAA-GTERYELGFPKGLIDPGE-TPLEAANRELKEEVGFGARQLTFLKELSLAPSYF 121 (185)
T ss_pred CCEEEEEEEe-CCC--EEEEEEeecC-CCCCcEEEccceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEecCCCcc
Confidence 3456665554 344 7999987644 467788999999999999 9999999999999999999999998865544444
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
...++.|++..... .....++.|..++.|+|++++.+.
T Consensus 122 ~~~~~~f~a~~~~~--~~~~~~e~E~i~~~~~~~~e~~~~ 159 (185)
T PRK11762 122 SSKMNIVLAEDLYP--ERLEGDEPEPLEVVRWPLADLDEL 159 (185)
T ss_pred CcEEEEEEEEcccc--ccCCCCCCceeEEEEEcHHHHHHH
Confidence 55566777653322 112345677789999999988653
No 47
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.64 E-value=5.1e-16 Score=127.01 Aligned_cols=98 Identities=23% Similarity=0.133 Sum_probs=65.2
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|... +.|+||||++|.|| |+.+||.||++||||+.+........+.. ....+..++.|++..... .
T Consensus 15 ~vLLvr~~~~-----~~W~lPGG~ve~gE-s~~~AA~REl~EETGl~v~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~-~ 86 (145)
T cd03672 15 KVLLVKGWKS-----KSWSFPKGKINKDE-DDHDCAIREVYEETGFDISKYIDKDDYIE-LIIRGQNVKLYIVPGVPE-D 86 (145)
T ss_pred EEEEEEecCC-----CCEECCCccCCCCc-CHHHHHHHHHHHhhCccceeccccceeee-cccCCcEEEEEEEecCCC-C
Confidence 8999998643 58999999999999 99999999999999998765321111111 111123344454432211 1
Q ss_pred CCCCC-Cccchhhhcccchhhhcccch
Q 025031 163 FKPTP-NPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 163 ~~~~~-~~~Ev~~v~wvpl~ell~~~~ 188 (259)
....+ ..+|+.++.|+|++++.+...
T Consensus 87 ~~~~~~~~~E~~~~~Wv~~~el~~~~~ 113 (145)
T cd03672 87 TPFEPKTRKEISKIEWFDIKDLPTKKN 113 (145)
T ss_pred cccCcCChhhhheEEEeeHHHhhhhhh
Confidence 11122 347999999999999987554
No 48
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=9.7e-16 Score=119.63 Aligned_cols=92 Identities=25% Similarity=0.359 Sum_probs=68.1
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcc--eeeeeehhhhHh-h--hcceeeeEeeEe
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSL--VDVVTVIEPFLS-K--YLLRVVPVIGIL 157 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~--i~~l~~l~~~~~-~--~~~~v~~~v~~~ 157 (259)
++||++|... |.|.||||+++++| ++.+||+||++||||+.... +..++.+..... . ....++.|++.+
T Consensus 13 ~vLl~~r~~~-----~~w~~PgG~ve~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 86 (118)
T cd04690 13 RVLLVRKRGT-----DVFYLPGGKIEAGE-TPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAEL 86 (118)
T ss_pred eEEEEEECCC-----CcEECCCCccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcc
Confidence 8999988643 78999999999999 99999999999999998877 777776654321 1 123344444443
Q ss_pred eccccCCCCCCccchhhhcccchhhhcc
Q 025031 158 HNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
.. .+. ..+|+.++.|++++++..
T Consensus 87 ~~----~~~-~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 87 TG----EPV-PAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred cC----CcC-CCchhhccEEecHHHccc
Confidence 32 222 347999999999999843
No 49
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=5.8e-16 Score=122.19 Aligned_cols=108 Identities=29% Similarity=0.292 Sum_probs=72.1
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh-Hhh-h
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF-LSK-Y 146 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~-~~~-~ 146 (259)
+|.+++++ ++| +|||++|+.....++|.|+||||+++.|| ++.+||+||++||||+.+.....++..... .+. +
T Consensus 3 ~v~~vv~~-~~~--~iLl~kr~~~~~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04699 3 AVAALIVK-DVG--RILILKRSKDERTAPGKWELPGGKVEEGE-TFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVY 78 (129)
T ss_pred eEEEEEEC-CCC--cEEEEEecCCCCCCCCcCcCCccCccCCC-CHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEE
Confidence 44444554 335 89999998875457899999999999999 999999999999999988766654221111 111 1
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell 184 (259)
......|.+.... ......+|+.++.|++++++.
T Consensus 79 ~~~~~~~~~~~~~----~~~~~~~e~~~~~w~~~~el~ 112 (129)
T cd04699 79 NVIYLVFVCEALS----GAVKLSDEHEEYAWVTLEELA 112 (129)
T ss_pred EEEEEEEEeeecC----CcccCChhheEEEEecHHHhh
Confidence 1111222222111 112345788999999999973
No 50
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.63 E-value=1e-15 Score=121.11 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=68.2
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc--c--eeeeEeeEee
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL--L--RVVPVIGILH 158 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~--~--~v~~~v~~~~ 158 (259)
+|||++|... +.|.+|||++|.|| ++.+||.||++||||+.......++.+.......+ . ..+.|.+...
T Consensus 13 ~vLlv~~~~~-----~~~~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 86 (125)
T cd04689 13 KVLLARVIGQ-----PHYFLPGGHVEPGE-TAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESS 86 (125)
T ss_pred EEEEEEecCC-----CCEECCCCcCCCCC-CHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcc
Confidence 8999998643 68999999999999 99999999999999999988888877654332211 1 1233333333
Q ss_pred ccccCCCCCCccchhhhcccchhhhc
Q 025031 159 NRKAFKPTPNPGEVEEVFDAPLEMFL 184 (259)
Q Consensus 159 ~~~~~~~~~~~~Ev~~v~wvpl~ell 184 (259)
.........+.+|+.++.|++++++.
T Consensus 87 ~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 87 WLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred cccccCCccCccceEEEEEccHHHcc
Confidence 21111122345688999999999964
No 51
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=1.1e-15 Score=121.35 Aligned_cols=100 Identities=19% Similarity=0.069 Sum_probs=72.3
Q ss_pred CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce-eeeeehhhhHhhh----cceeeeE
Q 025031 79 NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV-DVVTVIEPFLSKY----LLRVVPV 153 (259)
Q Consensus 79 ~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i-~~l~~l~~~~~~~----~~~v~~~ 153 (259)
++..+|||++|... |.|+||||++|.|| |+.+||+||++||||+..... ..++.+....... ...++.|
T Consensus 12 ~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E-~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f 85 (122)
T cd04666 12 GGEVEVLLVTSRRT-----GRWIVPKGGPEKDE-SPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVF 85 (122)
T ss_pred CCceEEEEEEecCC-----CeEECCCCCcCCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEE
Confidence 34458999998754 88999999999999 999999999999999988776 7777765443321 3334445
Q ss_pred eeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 154 IGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 154 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.+.+.... . .....|+.++.|++++++.+.-
T Consensus 86 ~~~~~~~~--~-~~~~~e~~~~~W~~~~ea~~~~ 116 (122)
T cd04666 86 PLEVTEEL--D-EWPEMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred EEEEeccc--c-CCcccCceEEEEecHHHHHHhc
Confidence 55544321 1 1123567899999999997643
No 52
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.63 E-value=1.4e-15 Score=121.68 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=71.6
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|... +.++|.|+||||++|.|| ++.+||.||+.||||+.+....+++...+..+.....++.|.+....
T Consensus 16 ~vLL~~R~~~-~~~~g~w~~PgG~ve~gE-~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (135)
T PRK10546 16 KILLAQRPAH-SDQAGLWEFAGGKVEPGE-SQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFH--- 90 (135)
T ss_pred EEEEEEccCC-CCCCCcEECCcccCCCCC-CHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEec---
Confidence 8999999765 468899999999999999 99999999999999999876666665544444444444444433221
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. +...|..++.|++++++.+.
T Consensus 91 ~~--~~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 91 GE--LQAHEHQALVWCTPEEALRY 112 (135)
T ss_pred Cc--ccccccceeEEcCHHHcccC
Confidence 11 12346778899999998753
No 53
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.62 E-value=1.6e-15 Score=125.43 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=78.6
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh---
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF--- 142 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~--- 142 (259)
.+.+|.+++++ .+| +|||++|+.. +|.|++|||++++|| ++.+||.||++||||+.+..+.+++.+...
T Consensus 7 ~~~~v~~~i~~-~~g--~vLL~~r~~~----~~~w~~P~G~~~~gE-~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y 78 (156)
T PRK00714 7 YRPNVGIILLN-RQG--QVFWGRRIGQ----GHSWQFPQGGIDPGE-TPEQAMYRELYEEVGLRPEDVEILAETRDWLRY 78 (156)
T ss_pred CCCeEEEEEEe-cCC--EEEEEEEcCC----CCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCccceEEEEEcCCeEEe
Confidence 34567676776 345 8999999843 489999999999999 999999999999999999888877765311
Q ss_pred --Hh------hh---cceeeeEeeEeeccccCCCCC---Cccchhhhcccchhhhccc
Q 025031 143 --LS------KY---LLRVVPVIGILHNRKAFKPTP---NPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 143 --~~------~~---~~~v~~~v~~~~~~~~~~~~~---~~~Ev~~v~wvpl~ell~~ 186 (259)
.. .. +...+.|++..... .....+ +.+|+.++.|++++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~-~~~~~l~~~~~~E~~~~~W~~~del~~~ 135 (156)
T PRK00714 79 DLPKRLVRRSKGVYRGQKQKWFLLRLTGD-DSEINLNTTSHPEFDAWRWVSYWYPLDQ 135 (156)
T ss_pred cCcHHHhhccCCcccCcEEEEEEEEecCC-CccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence 00 00 11234455554321 112222 3369999999999999764
No 54
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.8e-15 Score=119.81 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=70.8
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh----cceeeeEeeEee
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY----LLRVVPVIGILH 158 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~----~~~v~~~v~~~~ 158 (259)
+|||++|.. .+.|+||||++|.|| ++.+||.||++||||+.+.....++....++... ...++.|.+.+.
T Consensus 13 ~vLl~~~~~-----~~~w~lPgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 86 (126)
T cd04688 13 KLLVQKNPD-----ETFYRPPGGGIEFGE-SSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLL 86 (126)
T ss_pred EEEEEEeCC-----CCeEECCCccccCCC-CHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeC
Confidence 899998875 478999999999999 9999999999999999988888777765332211 222344445544
Q ss_pred ccccCC----CCCCccchhhhcccchhhhccc
Q 025031 159 NRKAFK----PTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 159 ~~~~~~----~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
...... ...+.+|+.++.|++++++...
T Consensus 87 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 87 DESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred CCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 322110 0124578999999999998754
No 55
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.60 E-value=2.4e-15 Score=117.02 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=74.5
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
++||++|+... .++|.|+||||+++.+| ++.+||.||+.||+|+++.....++...+..+.....++.|.+.....
T Consensus 14 ~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e-~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 89 (124)
T cd03425 14 RILIAQRPAGK-HLGGLWEFPGGKVEPGE-TPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSG-- 89 (124)
T ss_pred EEEEEEeCCCC-CCCCeEeCCCcccCCCC-CHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCC--
Confidence 89999998774 68999999999999999 999999999999999988776667665544444444455555544321
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
...+.|..++.|++++++.+.
T Consensus 90 ---~~~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 90 ---EPQLLEHQELRWVPPEELDDL 110 (124)
T ss_pred ---CcccccCceEEEeeHHHcccC
Confidence 122467889999999998764
No 56
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=2.9e-15 Score=119.03 Aligned_cols=100 Identities=22% Similarity=0.202 Sum_probs=66.5
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh--------hhcceeeeEe
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS--------KYLLRVVPVI 154 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~--------~~~~~v~~~v 154 (259)
+|||++|... ..+.|.+|||++|.|| ++.+||.||+.||||+.+....++........ ......+.|+
T Consensus 13 ~vLl~~r~~~---~~~~~~lPGG~ve~gE-t~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 88 (128)
T cd04687 13 KILLIKHHDD---GGVWYILPGGGQEPGE-TLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFE 88 (128)
T ss_pred EEEEEEEEcC---CCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEE
Confidence 8999998643 2478999999999999 99999999999999999876555544332211 1122233344
Q ss_pred eEeecccc--CCCCCCccchhhhcccchhhhcccc
Q 025031 155 GILHNRKA--FKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 155 ~~~~~~~~--~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
+.+..... .....+ .|..++.|+|++++.+..
T Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~ 122 (128)
T cd04687 89 CKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDIP 122 (128)
T ss_pred EEECCCCcccccCCCC-CCEEeeEEEcHHHhCccc
Confidence 44433211 111122 345689999999987643
No 57
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=3.2e-15 Score=118.09 Aligned_cols=104 Identities=27% Similarity=0.296 Sum_probs=72.9
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh---
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--- 145 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--- 145 (259)
+|.++++++ + +|||++|.. .|.|+||||++++|| |+.+||+||++||||+......+++........
T Consensus 4 ~v~~~i~~~--~--~vLL~~~~~-----~~~w~~PGG~ve~gE-s~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd04672 4 DVRAAIFKD--G--KILLVREKS-----DGLWSLPGGWADVGL-SPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPP 73 (123)
T ss_pred eEEEEEEEC--C--EEEEEEEcC-----CCcEeCCccccCCCC-CHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCC
Confidence 455555653 4 899998875 489999999999999 999999999999999988666666655432211
Q ss_pred hcce--eeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 YLLR--VVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~~--v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.... ...|++.+.. ..+..+ +|+.++.|++++++.+.
T Consensus 74 ~~~~~~~~~f~~~~~~---~~~~~~-~E~~~~~W~~~~el~~l 112 (123)
T cd04672 74 QPYQVYKLFFLCEILG---GEFKPN-IETSEVGFFALDDLPPL 112 (123)
T ss_pred CceEEEEEEEEEEecC---CcccCC-CceeeeEEECHHHCccc
Confidence 1122 2234444332 223344 78999999999998654
No 58
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.60 E-value=2.5e-15 Score=133.88 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=86.7
Q ss_pred cccccccCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeee
Q 025031 57 VRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVV 136 (259)
Q Consensus 57 ~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l 136 (259)
..+...++....+|++++.+ ++ +|||++|... .+|.|++|||++|+|| |+++||.||++|||||.+..+..+
T Consensus 122 ~c~~~~yp~~~paViv~V~~--~~--~iLL~rr~~~---~~g~wslPgG~vE~GE-s~eeAa~REv~EEtGl~v~~~~~~ 193 (256)
T PRK00241 122 HCRERYYPRIAPCIIVAVRR--GD--EILLARHPRH---RNGVYTVLAGFVEVGE-TLEQCVAREVMEESGIKVKNLRYV 193 (256)
T ss_pred CCCCEECCCCCCEEEEEEEe--CC--EEEEEEccCC---CCCcEeCcccCCCCCC-CHHHHhhhhhhhccCceeeeeEEE
Confidence 34445556555666665554 23 8999998754 2789999999999999 999999999999999999888888
Q ss_pred eehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 137 TVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 137 ~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
+....... ...++.|.+.+.. ..+.++++|+.++.|++++++....
T Consensus 194 ~s~~~~~p--~~lm~~f~a~~~~---~~~~~~~~Ei~~a~W~~~del~~lp 239 (256)
T PRK00241 194 GSQPWPFP--HSLMLGFHADYDS---GEIVFDPKEIADAQWFRYDELPLLP 239 (256)
T ss_pred EeEeecCC--CeEEEEEEEEecC---CcccCCcccEEEEEEECHHHCcccC
Confidence 76532221 2234556666543 2345677899999999999987644
No 59
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=2.9e-15 Score=118.39 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=67.6
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|... ..+.|+||||++|.|| |+.+||.||++||||+.+....+++.... .+...+.|++......
T Consensus 13 ~vLL~~r~~~---~~~~w~lPGG~ve~gE-s~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~g~- 83 (121)
T cd04669 13 EILLIRRIKP---GKTYYVFPGGGIEEGE-TPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYFLARVISGK- 83 (121)
T ss_pred EEEEEEEecC---CCCcEECCceeccCCC-CHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEEEEEEECCe-
Confidence 8999998754 2578999999999999 99999999999999999866666665433 1233455666544321
Q ss_pred CCC-------CCCccchhhhcccchhhhccc
Q 025031 163 FKP-------TPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~-------~~~~~Ev~~v~wvpl~ell~~ 186 (259)
... ..+.++..++.|++++++...
T Consensus 84 ~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 84 LGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred ecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 110 011234567899999998753
No 60
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=3.2e-15 Score=116.21 Aligned_cols=90 Identities=22% Similarity=0.260 Sum_probs=69.3
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|.. |.|+||||++++|| ++.+||.||++||||+.+..+..++.+.. .....+.|++.+...
T Consensus 12 ~vLlv~r~~------~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~~-- 78 (112)
T cd04667 12 RVLLVRKSG------SRWALPGGKIEPGE-TPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVPPS-- 78 (112)
T ss_pred EEEEEEcCC------CcEeCCCCcCCCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcCCc--
Confidence 899999863 78999999999999 99999999999999999888777766432 122345566654432
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.....++|+.++.|+|++++.+.
T Consensus 79 -~~~~~~~e~~~~~W~~~~el~~~ 101 (112)
T cd04667 79 -AQPKPSNEIADCRWLSLDALGDL 101 (112)
T ss_pred -CCCCCchheeEEEEecHHHhhhc
Confidence 11224579999999999999764
No 61
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.58 E-value=6.2e-15 Score=117.73 Aligned_cols=106 Identities=24% Similarity=0.121 Sum_probs=75.4
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
.+.+|.++++++ + +|||++|... ...|.|+||||++|.|| ++.+||+||++||||+.+....+++.... ..
T Consensus 12 ~~~~v~~ii~~~--~--~vLL~kr~~~--~~~g~w~lPgG~ve~gE-~~~~a~~REl~EEtGl~~~~~~~~~~~~~-~~- 82 (130)
T cd04511 12 PKIIVGCVPEWE--G--KVLLCRRAIE--PRHGFWTLPAGFMENGE-TTEQGALRETWEEAGARVEIDGLYAVYSV-PH- 82 (130)
T ss_pred CcEEEEEEEecC--C--EEEEEEecCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCEEEeeeEEEEEec-CC-
Confidence 345555555542 4 8999999764 46789999999999999 99999999999999998876666665432 11
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell 184 (259)
.....+.|++.+... ... ...|..++.|++++++.
T Consensus 83 ~~~~~~~f~~~~~~~---~~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 83 ISQVYMFYRARLLDL---DFA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred ceEEEEEEEEEEcCC---ccc-CCcchhceEEECHHHCC
Confidence 222344566665432 222 23678899999999985
No 62
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=7.4e-15 Score=115.98 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=73.4
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|... +.++|.|+||||+++.|| ++.+|+.||+.||+|+.+.....++...+.++.....++.|.+...+.
T Consensus 17 ~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge-~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~-- 92 (128)
T TIGR00586 17 EIIITRRADG-HMFAKLLEFPGGKEEGGE-TPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGG-- 92 (128)
T ss_pred EEEEEEEeCC-CCCCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCC--
Confidence 8999999875 578899999999999999 999999999999999987666666665555555455556665554331
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
. +...+..++.|++++++.+.
T Consensus 93 -~--~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 93 -P--PGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred -C--cCcccccccEEeCHHHCCcc
Confidence 1 11345677899999988764
No 63
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=5.5e-15 Score=116.15 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=72.0
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh---Hh-
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF---LS- 144 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~---~~- 144 (259)
+|.+++++ +++ +|||++|+.. |.|+||||+++.+| ++.+||.||++||||+......+++.+... .+
T Consensus 4 ~v~~ii~~-~~~--~vLl~~r~~~-----~~w~lPgG~v~~~E-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~ 74 (129)
T cd04676 4 GVTAVVRD-DEG--RVLLIRRSDN-----GLWALPGGAVEPGE-SPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTY 74 (129)
T ss_pred eEEEEEEC-CCC--eEEEEEecCC-----CcEECCeeccCCCC-CHHHHHHHHHHHHhCceeEeeEEEEEeecccceeec
Confidence 45555555 345 8999999865 89999999999999 999999999999999988766665433211 11
Q ss_pred -h---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 145 -K---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 145 -~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
. +......|++.+... ....+.+|+.++.|++++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 75 PNGDVRQYLDITFRCRVVGG---ELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred CCCCcEEEEEEEEEEEeeCC---eecCCCCceeEEEEEChhhCccc
Confidence 1 111222233333321 12235578889999999998764
No 64
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=7.9e-15 Score=117.52 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=67.7
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC-cceeeeeehhhhH---hh----hcceeeeEe
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP-SLVDVVTVIEPFL---SK----YLLRVVPVI 154 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~-~~i~~l~~l~~~~---~~----~~~~v~~~v 154 (259)
+|||++|... +.|+||||++|+|| ++.+||+||++||||+.. .....++.+..+. .. .....+.|+
T Consensus 12 ~vLLv~~~~~-----~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
T cd04686 12 KILLLYTKRY-----GDYKFPGGGVEKGE-DHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYYYL 85 (131)
T ss_pred EEEEEEEcCC-----CcEECccccCCCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEEEEEEEE
Confidence 8999998653 57999999999999 999999999999999986 4455555553221 11 122345566
Q ss_pred eEeeccccCCCCCCccch---hhhcccchhhhcccch
Q 025031 155 GILHNRKAFKPTPNPGEV---EEVFDAPLEMFLKDEN 188 (259)
Q Consensus 155 ~~~~~~~~~~~~~~~~Ev---~~v~wvpl~ell~~~~ 188 (259)
+.+.... ..+.++..|. ..+.|+|++++.+...
T Consensus 86 ~~~~~~~-~~~~~~~~e~~~~~~~~W~~~~ea~~~~~ 121 (131)
T cd04686 86 CEVDAEL-GAQQLEDYEAELGMKPIWINIHEAIEHNE 121 (131)
T ss_pred EEEcCCc-CCcccchhhHhcCCCcEEecHHHHHHhhH
Confidence 6654322 2233444444 2589999999987543
No 65
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=1.1e-14 Score=116.20 Aligned_cols=108 Identities=19% Similarity=0.083 Sum_probs=67.3
Q ss_pred eEEEEEeecCCCceEEEEeecccc--cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031 69 AVLVCLFEGDNGELRVILTKRASR--LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY 146 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~--~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~ 146 (259)
|.+|++.. +++.++|||++|... .+...|.|+||||+++.+| ++.+||+||++||||+... ...+. +..+....
T Consensus 3 ~g~v~~~~-~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E-~~~~aA~REl~EEtGl~~~-~~~~~-l~~~~~~~ 78 (126)
T cd04662 3 AGILLYRF-RDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGE-DPLLAAKREFSEETGFCVD-GPFID-LGSLKQSG 78 (126)
T ss_pred EEEEEEEE-cCCcEEEEEEEccCccccCCCCCEEECCcccCCCCc-CHHHHHHHHHHHHhCCcce-eeEEe-EEEEECCC
Confidence 34444433 346679999997443 2356789999999999999 9999999999999999865 22222 21122222
Q ss_pred cceeeeEeeEeeccc-------------cCCCCCC-ccchhhhcccch
Q 025031 147 LLRVVPVIGILHNRK-------------AFKPTPN-PGEVEEVFDAPL 180 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~-------------~~~~~~~-~~Ev~~v~wvpl 180 (259)
+..++.|++.+.... ...+... .+|++++.|+|+
T Consensus 79 ~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 79 GKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred CeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 334555554433210 1122222 478888888873
No 66
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.54 E-value=9.8e-15 Score=124.13 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=82.0
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccc----cccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLS----THSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF 142 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~----~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~ 142 (259)
..+|.|++++.+++ +|||+++-+..- ..++.|+||||++|.|| ++++||+||++||||+....+..++.+...
T Consensus 44 ~~~v~vl~~~~~~~--~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE-~~~~aA~REl~EEtG~~~~~~~~~~~~~~~ 120 (185)
T TIGR00052 44 GNAAAVLLYDPKKD--TVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGE-SPEDVARREAIEEAGYQVKNLRKLLSFYSS 120 (185)
T ss_pred CCeEEEEEEECCCC--EEEEEECceeeeeecCCcceEEEECcEecCCCC-CHHHHHHHHccccccceecceEEEEEEEcC
Confidence 34555555543334 788888654311 14678999999999999 999999999999999999988888776544
Q ss_pred HhhhcceeeeEeeEeeccccC-CCCCCccchhhhcccchhhhccc
Q 025031 143 LSKYLLRVVPVIGILHNRKAF-KPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 143 ~~~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.......++.|++.+...... ....+.+|..++.|+|++++.+.
T Consensus 121 ~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~ 165 (185)
T TIGR00052 121 PGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW 165 (185)
T ss_pred CCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence 444455677788876532111 11223456678999999988653
No 67
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.54 E-value=2.2e-14 Score=110.59 Aligned_cols=97 Identities=31% Similarity=0.377 Sum_probs=71.1
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh--hhcceeeeEeeEeecc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS--KYLLRVVPVIGILHNR 160 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~--~~~~~v~~~v~~~~~~ 160 (259)
++||++|+.. ++|.|+||||+++.+| ++.++|+||++||+|+.+.....++....... .....++.|.+.+...
T Consensus 13 ~ill~kr~~~---~~~~~~~p~G~~~~~e-~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (123)
T cd02883 13 RVLLVRRADS---PGGLWELPGGGVEPGE-TLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGG 88 (123)
T ss_pred CEEEEEEcCC---CCCeEeCCcccccCCC-CHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEEEEEeCCC
Confidence 8999999876 6799999999999999 99999999999999998864444444332222 2334445555554432
Q ss_pred ccCCCCCCccchhhhcccchhhhcc
Q 025031 161 KAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 161 ~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
.. ...+..|+.++.|++++++.+
T Consensus 89 ~~--~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 89 EP--TLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred Cc--CCCCCCccceEEEEcHHHCcc
Confidence 11 124567889999999999986
No 68
>PLN02791 Nudix hydrolase homolog
Probab=99.51 E-value=2.9e-14 Score=142.58 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=86.9
Q ss_pred cCccceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeeh
Q 025031 63 FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVI 139 (259)
Q Consensus 63 ~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l 139 (259)
.+..+.||.|.+++.+++ +|||+||+..+..|||.|++ +|||++.|| +..+||+||++||+||.+. .+..++.+
T Consensus 28 ~Gl~HrAvhVwIfn~~~g--elLLQkRS~~K~~~PG~WDiS~gGHv~aGE-s~~eAA~REL~EELGI~l~~~~l~~l~~~ 104 (770)
T PLN02791 28 DGDYHRAVHVWIYSESTQ--ELLLQRRADCKDSWPGQWDISSAGHISAGD-TSLLSAQRELEEELGIILPKDAFELLFVF 104 (770)
T ss_pred CCCceEEEEEEEEECCCC--eEEEEEecCCCCCCCCcccCcCCCCCCCCC-CHHHHHHHHHHHHhCCCCChhheeeeeeE
Confidence 467899999999985345 89999999999999999999 799999999 9999999999999999743 34444442
Q ss_pred hhh-H-hh----hcceeeeEeeEeec-cccCCCCCCccchhhhcccchhhhcc
Q 025031 140 EPF-L-SK----YLLRVVPVIGILHN-RKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 140 ~~~-~-~~----~~~~v~~~v~~~~~-~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
... . .. .....+.|++.... ......+++++||+++.|++++++.+
T Consensus 105 ~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~ 157 (770)
T PLN02791 105 LQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS 157 (770)
T ss_pred EEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence 111 0 11 01122333332211 11124567899999999999999974
No 69
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=7.9e-14 Score=112.42 Aligned_cols=114 Identities=18% Similarity=0.090 Sum_probs=72.6
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC-cceeeeeehhhhH----
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP-SLVDVVTVIEPFL---- 143 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~-~~i~~l~~l~~~~---- 143 (259)
++.+++++ .+| +|||++|.......++.|.+|||+++.|| ++.+||.||++||||+.. .....+......+
T Consensus 2 ~~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~gE-~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~ 77 (133)
T cd04685 2 AARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPGE-SPEQAARRELREETGITVADLGPPVWRRDAAFTFLG 77 (133)
T ss_pred eEEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEEEEecC
Confidence 34455565 345 89999987653346789999999999999 999999999999999988 4444433222111
Q ss_pred hhhcceeeeEeeEeeccccCCCC---CCccchhhhcccchhhhccc
Q 025031 144 SKYLLRVVPVIGILHNRKAFKPT---PNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 ~~~~~~v~~~v~~~~~~~~~~~~---~~~~Ev~~v~wvpl~ell~~ 186 (259)
.......+.|++.+......... ...+++..+.|++++++.+.
T Consensus 78 ~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 78 VDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred ccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 11112234455554421111111 11235668999999999764
No 70
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.49 E-value=6.7e-14 Score=120.60 Aligned_cols=115 Identities=19% Similarity=0.135 Sum_probs=82.3
Q ss_pred eeEEEEEeecCCCceEEEEeeccccccc-----ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLST-----HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF 142 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~-----~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~ 142 (259)
-+|.|+.+..+++ +|+|++.-+. .. .+-.|+||+|++|+|| ++++||+||+.||||+.+..+..++.+...
T Consensus 50 ~~V~il~~~~~~~--~vlLvrQyR~-~~~~~~~~~~~lE~PAG~vd~gE-~p~~aA~REL~EETGy~a~~~~~l~~~~~s 125 (202)
T PRK10729 50 HAAVLLPFDPVRD--EVVLIEQIRI-AAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVGRTKPVLSYLAS 125 (202)
T ss_pred CeEEEEEEECCCC--EEEEEEeeec-ccccCCCCCeEEEccceEcCCCC-CHHHHHHHHHHHHhCceeeEEEEEEEEEcC
Confidence 3455554543334 7888876544 22 1246999999999999 999999999999999999888888766554
Q ss_pred HhhhcceeeeEeeEeecc--ccCCCCCCccchhhhcccchhhhccc
Q 025031 143 LSKYLLRVVPVIGILHNR--KAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 143 ~~~~~~~v~~~v~~~~~~--~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.......++.|++..... .......+.+|..++.|+|++++.+.
T Consensus 126 pg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~ 171 (202)
T PRK10729 126 PGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 171 (202)
T ss_pred CCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence 445556788888875321 11112356678889999999998764
No 71
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.49 E-value=8e-14 Score=128.96 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh---hh--
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE---PF-- 142 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~---~~-- 142 (259)
.+|.++++. +| +|||++|... +.+|.|+||||++|+|| ++++||+||++|||||.+....+.+.+. .+
T Consensus 204 vtv~avv~~--~g--~VLLvrR~~~--p~~g~W~lPGG~ve~gE-t~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~ 276 (340)
T PRK05379 204 VTVDAVVVQ--SG--HVLLVRRRAE--PGKGLWALPGGFLEQDE-TLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH 276 (340)
T ss_pred eEEEEEEEE--CC--EEEEEEecCC--CCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence 344444444 34 8999999875 45899999999999999 9999999999999999876544433321 11
Q ss_pred Hhh---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 143 LSK---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 143 ~~~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
... .....+.|++.+........ ...+|+.++.|+|++++...
T Consensus 277 p~r~~~~~~i~~~f~~~~~~~~~~~~-~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 277 PGRSLRGRTITHAFLFEFPAGELPRV-KGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCCcEEEEEEEEEecCCccCcc-CCCCceeeEEEEEHHHhhhh
Confidence 111 12233445555443211111 23478999999999998754
No 72
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.47 E-value=1.2e-13 Score=122.21 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=80.1
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCC----------------CchhhhhHHHHHhh
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDE----------------DDGETATREAKEEI 126 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~----------------s~~~aA~REl~EE~ 126 (259)
+..+.||.|+|++ .+| +|||+||+..+..+||.|+.. ||++..||+ +..+||+||+.|||
T Consensus 53 gl~Hra~~v~i~n-~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl 129 (247)
T PLN02552 53 GLLHRAFSVFLFN-SKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL 129 (247)
T ss_pred CceEEEEEEEEEc-CCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence 5678899998887 456 899999999999999999665 455554420 15689999999999
Q ss_pred CCCCcc-----eeeeeehhhhHhhh------c----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 127 GLDPSL-----VDVVTVIEPFLSKY------L----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 127 GL~~~~-----i~~l~~l~~~~~~~------~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
||.... +.+++.+....... + ..+..++ +........+.++++||+++.|++++++...
T Consensus 130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~-~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~ 203 (247)
T PLN02552 130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLL-FIRPVRDVKVNPNPDEVADVKYVNREELKEM 203 (247)
T ss_pred CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEE-EEEecCCCcccCCHHHhheEEEEeHHHHHHH
Confidence 998543 44444322111110 1 1222222 2222222346789999999999999999864
No 73
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.46 E-value=2.8e-13 Score=107.23 Aligned_cols=101 Identities=21% Similarity=0.169 Sum_probs=72.2
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL 148 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~ 148 (259)
+|+|+++.+ + ++||++|.. +.|+||||++|.+| ++.+||+||++||+|+....+..++.+.........
T Consensus 2 ~v~vi~~~~--~--~vLl~~~~~------~~w~lPgG~ve~gE-~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~ 70 (118)
T cd04665 2 SVLVICFYD--D--GLLLVRHKD------RGWEFPGGHVEPGE-TIEEAARREVWEETGAELGSLTLVGYYQVDLFESGF 70 (118)
T ss_pred EEEEEEEEC--C--EEEEEEeCC------CEEECCccccCCCC-CHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcE
Confidence 344544542 3 899998752 57999999999999 999999999999999999988888886433222233
Q ss_pred eeeeEeeEeeccccCCCCCCccchhhhcccchhhh
Q 025031 149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF 183 (259)
Q Consensus 149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el 183 (259)
....|++.+...... . ...|+..+.|++....
T Consensus 71 ~~~~y~a~~~~~~~~--~-~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 71 ETLVYPAVSAQLEEK--A-SYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEEEEEEecccc--c-ccccccCcEEeccCCc
Confidence 345566665543221 2 3489999999986544
No 74
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.44 E-value=1.8e-13 Score=109.89 Aligned_cols=95 Identities=19% Similarity=0.061 Sum_probs=65.6
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeeh-----hhhH-------hhhccee
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVI-----EPFL-------SKYLLRV 150 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l-----~~~~-------~~~~~~v 150 (259)
++||++|... ..|.|+||||++|+|| |+.+||.||++||||+.... .+++.. ...+ ...+..+
T Consensus 14 ~~Llvk~~~~---~~g~W~fPgG~ve~gE-t~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (132)
T cd04661 14 LVLLVQQKVG---SQNHWILPQGKREEGE-TLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV 88 (132)
T ss_pred EEEEEEeecC---CCCeeECCcccccCCC-CHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence 7899888643 2589999999999999 99999999999999997653 333221 1000 0012335
Q ss_pred eeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 151 VPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 151 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
+.|.+.+... .+.++ +|+.++.|++++++.+.
T Consensus 89 ~~f~~~~~~g---~~~~~-~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 89 FFFKARYMSG---QFELS-QNQVDFKWLAKEELQKY 120 (132)
T ss_pred EEEEEEEecC---ccccC-CCcceeEecCHHHHHhh
Confidence 5555554432 22333 78999999999998764
No 75
>PRK08999 hypothetical protein; Provisional
Probab=99.41 E-value=6e-13 Score=121.26 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=73.2
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|... +.++|.|+||||+++.|| ++.+||.||++||+|+.+.....+....+.++.....++.|.+.....
T Consensus 18 ~vLL~kR~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~-- 93 (312)
T PRK08999 18 RILLARRPEG-KHQGGLWEFPGGKVEPGE-TVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG-- 93 (312)
T ss_pred eEEEEEecCC-CCCCCeEECCccCCCCCC-CHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC--
Confidence 8999999765 578999999999999999 999999999999999987766666665554444444555554332211
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.+...|..++.|++++++.+-
T Consensus 94 ---~~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 94 ---EPHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred ---cccCccCCccEEecHHHcccC
Confidence 123457788899999998764
No 76
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.39 E-value=9.3e-13 Score=112.55 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=80.5
Q ss_pred eeEEEEEeecCCCceEEEEeeccccccc------ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhh
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLST------HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEP 141 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~------~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~ 141 (259)
.+|.|++++.+++ +|+|++.-+. .. ..-.|++|+|.+|+ + ++++||+||+.||||+.+..++.++.+..
T Consensus 46 ~~v~Vl~~~~~~~--~vvLvrQyR~-~v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~~~~~l~~~~~ 120 (191)
T PRK15009 46 NGATILLYNAKKK--TVVLIRQFRV-ATWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVGEVRKLFELYM 120 (191)
T ss_pred CEEEEEEEECCCC--EEEEEEcccc-cccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccceEEEeeEEEc
Confidence 3444545553344 7888876654 22 22358999999995 5 69999999999999999999998887655
Q ss_pred hHhhhcceeeeEeeEeeccccC-CCCCCccchhhhcccchhhhccc
Q 025031 142 FLSKYLLRVVPVIGILHNRKAF-KPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 142 ~~~~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....+...++.|++........ ....+++|..++.|+|++++.+.
T Consensus 121 spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~ 166 (191)
T PRK15009 121 SPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM 166 (191)
T ss_pred CCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence 5555566678888875321111 11245678889999999998754
No 77
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=1e-12 Score=104.00 Aligned_cols=46 Identities=28% Similarity=0.490 Sum_probs=40.0
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS 131 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~ 131 (259)
.+||.+|+.. ..+|.|+||||++|.|| ++.+||.||+.||||+...
T Consensus 16 ~~lL~~r~~~--~~~~~w~lPgG~ve~~E-~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 16 GLLVIRRGIE--PGRGKLALPGGFIELGE-TWQDAVARELLEETGVAVD 61 (118)
T ss_pred CEEEEEeecC--CCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCccc
Confidence 3667777654 46899999999999999 9999999999999999875
No 78
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.35 E-value=2.3e-12 Score=106.62 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=66.7
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
++||+++.. ..|+||||++|+|| |+.+||+||++||||+.+..+..++.+...........+.|++.+...
T Consensus 36 ~~LL~~~~~------~~~elPgG~vE~gE-t~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~-- 106 (156)
T TIGR02705 36 QWLLTEHKR------RGLEFPGGKVEPGE-TSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL-- 106 (156)
T ss_pred EEEEEEEcC------CcEECCceecCCCC-CHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc--
Confidence 788887653 24999999999999 999999999999999999999999886544333344455666766532
Q ss_pred CCCCCCccchhhhc-ccchhhhccc
Q 025031 163 FKPTPNPGEVEEVF-DAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~-wvpl~ell~~ 186 (259)
. .. +|..++. +++++++.+.
T Consensus 107 -~--~~-~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 107 -E--SK-DDYLETKGPVLLQEIPDI 127 (156)
T ss_pred -c--cC-CCceeeEeEEEHHHHHHH
Confidence 1 12 4545555 6888887653
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.34 E-value=1.3e-12 Score=116.31 Aligned_cols=125 Identities=22% Similarity=0.297 Sum_probs=93.5
Q ss_pred ccccccccccccccccCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhC
Q 025031 48 GSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127 (259)
Q Consensus 48 g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~G 127 (259)
+..+..+| ..+...|+.-.-+|++++.+++ ++||-++..+ ++|.+++-.|.||+|| |+++|+.||++||+|
T Consensus 126 ~g~~~~C~-~cg~~~fPR~dP~vIv~v~~~~----~ilLa~~~~h---~~g~yS~LAGFVE~GE-TlE~AV~REv~EE~G 196 (279)
T COG2816 126 GGWARVCP-KCGHEHFPRIDPCVIVAVIRGD----EILLARHPRH---FPGMYSLLAGFVEPGE-TLEQAVAREVFEEVG 196 (279)
T ss_pred CceeeeCC-CCCCccCCCCCCeEEEEEecCC----ceeecCCCCC---CCcceeeeeecccCCc-cHHHHHHHHHHHhhC
Confidence 33444444 3445566666667777666532 4888887765 4899999999999999 999999999999999
Q ss_pred CCCcceeeeeehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 128 L~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
|.+..+.++++.++.+..+. +.-|.+..... .+++|..|+.++.|++.++.+..
T Consensus 197 i~V~~vrY~~SQPWPfP~SL--Migf~aey~sg---eI~~d~~Eleda~WFs~~evl~~ 250 (279)
T COG2816 197 IKVKNVRYVGSQPWPFPHSL--MLGFMAEYDSG---EITPDEGELEDARWFSRDEVLPA 250 (279)
T ss_pred eEEeeeeEEeccCCCCchhh--hhhheeeeccc---cccCCcchhhhccccCHhHHhhh
Confidence 99999999998765544332 44455555542 35778899999999999996543
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.33 E-value=3.6e-12 Score=101.92 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=57.9
Q ss_pred CceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCccee-eeeehhhhHhhhcceeeeEeeEee
Q 025031 80 GELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVD-VVTVIEPFLSKYLLRVVPVIGILH 158 (259)
Q Consensus 80 g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~-~l~~l~~~~~~~~~~v~~~v~~~~ 158 (259)
++++|++.+... +.|.||||++++|| ++.+||+||++||||+...... .++............++.+++.+.
T Consensus 12 ~~~~ll~~r~~~------~~~~lPgG~ve~~E-~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (126)
T cd04663 12 EVLELLVFEHPL------AGFQIVKGTVEPGE-TPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCEVD 84 (126)
T ss_pred ceEEEEEEEcCC------CcEECCCccCCCCC-CHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEEec
Confidence 346777776543 35999999999999 9999999999999999862211 112211111111222333334332
Q ss_pred ----ccccCCCCCCccchhhhcccchhhhcc
Q 025031 159 ----NRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 159 ----~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
......+..+..+.-.++|+|++++.+
T Consensus 85 ~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 85 QDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred CCCcccccCcccCCCCceEEEEEEccccccc
Confidence 111111222334444667999999843
No 81
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.31 E-value=7.1e-12 Score=98.62 Aligned_cols=113 Identities=26% Similarity=0.245 Sum_probs=70.8
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchh-hhhHHHHHhhCCCCc--ceeeeeehhhhHhh
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGE-TATREAKEEIGLDPS--LVDVVTVIEPFLSK 145 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~-aA~REl~EE~GL~~~--~i~~l~~l~~~~~~ 145 (259)
++.+++..... .+|++++|.... |.|.||||++|.+| ++.+ ||+||++||||+... ....++.+......
T Consensus 13 ~~~~~~~~~~~--~~vl~~~~~~~~----~~~~~PgG~ve~~e-~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 85 (161)
T COG0494 13 AVAVLVGRDGP--GEVLLAQRRDDG----GLWELPGGKVEPGE-ELPEEAAARELEEETGLRVKDERLELLGEFPPSPGD 85 (161)
T ss_pred eEEEEEecCCC--CEEeEEEccccC----CceecCCcccCCCC-chHHHHHHHHHHHHhCCeeeeecceeeeeccCcccC
Confidence 44454444322 389999988763 69999999999999 5587 999999999999888 56666665543322
Q ss_pred hc-----ceeeeEeeEeeccccCCCCCC---ccchhhhcccchhhhcccch
Q 025031 146 YL-----LRVVPVIGILHNRKAFKPTPN---PGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 146 ~~-----~~v~~~v~~~~~~~~~~~~~~---~~Ev~~v~wvpl~ell~~~~ 188 (259)
.. .....+..............+ ..|...+.|+++.++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 136 (161)
T COG0494 86 GSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVL 136 (161)
T ss_pred cccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccc
Confidence 11 111111221111111111111 25788999999988876543
No 82
>PLN03143 nudix hydrolase; Provisional
Probab=99.30 E-value=7.2e-12 Score=113.15 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=41.5
Q ss_pred CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc
Q 025031 79 NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS 131 (259)
Q Consensus 79 ~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~ 131 (259)
+++.+|+|+++.+. ....-.|+||||++|++++++++||+||++||||+.+.
T Consensus 140 ~ge~~VlLVrQ~R~-pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 140 EGETYAVLTEQVRV-PVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK 191 (291)
T ss_pred CCCEEEEEEEeEec-CCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 45557999998864 22334799999999986339999999999999999764
No 83
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.29 E-value=5.3e-12 Score=107.24 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=42.8
Q ss_pred eecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC
Q 025031 75 FEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP 130 (259)
Q Consensus 75 ~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~ 130 (259)
....++.++||+++|+.. |.|+||||++|++| ++.+||.||+.||||+..
T Consensus 42 ~~~~~~~l~vLl~~r~~~-----g~walPGG~v~~~E-~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 42 PKSGKPILQFVAIKRPDS-----GEWAIPGGMVDPGE-KISATLKREFGEEALNSL 91 (186)
T ss_pred ecCCCCeeEEEEEEeCCC-----CcCcCCeeeccCCC-CHHHHHHHHHHHHHcccc
Confidence 333355789999999753 89999999999999 999999999999997754
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.20 E-value=7e-12 Score=112.30 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=77.7
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
..-.|++++.+ .++ +.+|..|.. +.-+|.|+.++|.+|+|| |+++||+||++||+|++++.+.+....++....
T Consensus 186 ~dPvVIm~li~-~d~--~~~LL~R~~--r~~~gl~t~lAGFlEpGE-S~eeav~REtwEEtGi~V~~I~~~asQPWP~~p 259 (345)
T KOG3084|consen 186 TDPVVIMLLID-HDG--KHALLGRQK--RYPPGLWTCLAGFLEPGE-SIEEAVRRETWEETGIEVEVISYVASQPWPLMP 259 (345)
T ss_pred CCCeEEEEEEc-CCC--CEeeeeccc--CCCCchhhhhhccCCccc-cHHHHHHHHHHHHhCceeeeEeeeecCCCCCCc
Confidence 33455555655 555 445555543 466789999999999999 999999999999999999999988776654222
Q ss_pred hcceeeeEeeEeeccccCCCCCCcc-chhhhcccchhhhccc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPG-EVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~-Ev~~v~wvpl~ell~~ 186 (259)
..+ +..+++...-. .....+.+ |..++.|++-+++.+.
T Consensus 260 ~SL-MIgc~ala~~~--~~I~vd~dlEleDaqwF~r~ev~~a 298 (345)
T KOG3084|consen 260 QSL-MIGCLALAKLN--GKISVDKDLELEDAQWFDREEVKSA 298 (345)
T ss_pred hHH-HHHHHHHHhhC--CccccCcchhhhhcccccHHHHHHH
Confidence 211 22222222211 23456777 9999999999988753
No 85
>PLN02839 nudix hydrolase
Probab=99.17 E-value=5.8e-11 Score=109.43 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=90.7
Q ss_pred ccCccceeEEEEEeecCCCceEEEEeecccccccccceee-cCCCCCCCCCCCchhhhhHHHHHhhCCCCc---ceeeee
Q 025031 62 TFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVS-LPGGKAEEGDEDDGETATREAKEEIGLDPS---LVDVVT 137 (259)
Q Consensus 62 ~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~ws-fPGG~ve~gE~s~~~aA~REl~EE~GL~~~---~i~~l~ 137 (259)
.|+.+..+|.+--+...+++.++++.||+.++..+||+|. +.||.+..|| ++.+|++||++||.||+.. .+.-.|
T Consensus 198 lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGe-sp~etliREa~EEAgLp~~l~~~~~~~G 276 (372)
T PLN02839 198 YFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGI-SCGENLVKECEEEAGISKAIADRAIAVG 276 (372)
T ss_pred ccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCC-CHHHHHHHHHHHHcCCCHHHHhcceEeE
Confidence 4677778888744433456679999999999999999996 5899999999 9999999999999999865 334455
Q ss_pred ehhhhHh-hhcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 138 VIEPFLS-KYLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 138 ~l~~~~~-~~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
.+.+... ..+. .-.-|++.+.-+.++.|.++..||+++.+++++++.+
T Consensus 277 ~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~ 326 (372)
T PLN02839 277 AVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVAN 326 (372)
T ss_pred EEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHH
Confidence 5543321 1111 1122344444444677788889999999999999975
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.13 E-value=1.5e-10 Score=97.50 Aligned_cols=117 Identities=24% Similarity=0.331 Sum_probs=76.7
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcc--eeeeeehhhhH
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSL--VDVVTVIEPFL 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~--i~~l~~l~~~~ 143 (259)
+.-||.|+.+-..+|.+.++|++.-+. ....-.++||+|.+|.|| |+++||+||++||||+.-.. ......+++-+
T Consensus 72 ~~dgVaIl~il~~dG~~~ivL~kQfRp-P~Gk~ciElPAGLiD~ge-~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGl 149 (225)
T KOG3041|consen 72 RADGVAILAILESDGKPYIVLVKQFRP-PTGKICIELPAGLIDDGE-DFEGAAIRELEEETGYKGKVDMVSPTVFLDPGL 149 (225)
T ss_pred cCCeEEEEEEEecCCcEEEEEEEeecC-CCCcEEEEcccccccCCC-chHHHHHHHHHHHhCccceeeeccccEEcCCCC
Confidence 344555543333578899999986543 122225789999999999 99999999999999997322 23444555544
Q ss_pred hhhcceeeeEeeEeec----cccCCCCCCccchhhhcccchhhhccc
Q 025031 144 SKYLLRVVPVIGILHN----RKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 ~~~~~~v~~~v~~~~~----~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
++... +-+++.++. .......++..|..+++-+|+.+|.+.
T Consensus 150 tn~~~--~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~ 194 (225)
T KOG3041|consen 150 TNCNL--CIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE 194 (225)
T ss_pred CCCce--EEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence 44333 333333332 112233566789999999999998753
No 87
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.00 E-value=5.1e-10 Score=92.75 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=86.6
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL-- 143 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-- 143 (259)
+.|..+.||+ .+| ++|+++|+..++.|||.|.- -.||--+|| +..+||+|-+.+|+||.+.....+..++.+.
T Consensus 33 HrAFS~~lFn-e~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~e-s~~~A~~rRl~~ELGie~~~~d~~~il~rf~Yr 108 (185)
T COG1443 33 HRAFSSFLFN-ERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPGE-SNEDAARRRLAYELGIEPDQYDKLEILPRFRYR 108 (185)
T ss_pred HhhhheeEEC-CCC--ceeeehhhhhcccCcccccccccCCCcCCC-chHHHHHHHHHHHhCCCCcccCccccccceEEe
Confidence 5677777887 567 89999999999999999976 468888999 9999999999999999988655444444332
Q ss_pred --hhhc---ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 144 --SKYL---LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 144 --~~~~---~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
+..+ ..|.|+++.-... .+.+|++||.+..|++.++|.+.-.
T Consensus 109 A~~~~~~~E~Eic~V~~~~~~~---~~~~npdEV~~~~wv~~e~l~~~~~ 155 (185)
T COG1443 109 AADPDGIVENEICPVLAARLDS---ALDPNPDEVMDYRWVSPEDLKEMVD 155 (185)
T ss_pred ccCCCCcceeeeeeEEEEeecC---CCCCChHHhhheeccCHHHHHHhhc
Confidence 1122 2355554432221 4578999999999999999987543
No 88
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.93 E-value=1.6e-09 Score=87.23 Aligned_cols=118 Identities=24% Similarity=0.225 Sum_probs=76.1
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL 143 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~ 143 (259)
+.|..|-.||+.- ++..++|||+.=+++ +-.|-||+|++|++| +..+||+||++||.|+.-...++++....+.
T Consensus 7 G~r~vagCi~~r~-~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE-~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~ 80 (145)
T KOG2839|consen 7 GFRLVAGCICYRS-DKEKIEVLLVSSSKK----PHRWIVPKGGWEPDE-SVEEAALRETWEEAGVKGKLGRLLGGFEDFL 80 (145)
T ss_pred CcEEEEEeeeeee-cCcceEEEEEecCCC----CCCccCCCCCCCCCC-CHHHHHHHHHHHHhCceeeeeccccchhhcc
Confidence 3444444444443 223578999975543 346999999999999 9999999999999999988888676665544
Q ss_pred hh-hcceeeeEeeEeeccccCCCCCC-ccchhhhcccchhhhcccc
Q 025031 144 SK-YLLRVVPVIGILHNRKAFKPTPN-PGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 144 ~~-~~~~v~~~v~~~~~~~~~~~~~~-~~Ev~~v~wvpl~ell~~~ 187 (259)
+. +......+++.+.....+..-++ ..|.....|+.+++....-
T Consensus 81 ~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~ 126 (145)
T KOG2839|consen 81 SKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELC 126 (145)
T ss_pred ChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHH
Confidence 32 22222333333332222221122 2357788999999887644
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.88 E-value=7.5e-09 Score=79.98 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=66.7
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
++||+||... +.++|.|+||||.++.++ +.+++..||+.||.++ ....++.+.+.++.....+++|.+.+....
T Consensus 15 ~~ll~kR~~~-gl~~glwefP~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~~~~~~- 88 (118)
T cd03431 15 RVLLEKRPEK-GLLAGLWEFPSVEWEEEA-DGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLARLEGDL- 88 (118)
T ss_pred eEEEEECCCC-CCCCcceeCCCccccCCc-CHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEEEeCCC-
Confidence 8999999876 789999999999999888 8888888999998875 223345555556666666666665543210
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.+..++.|++++++.+.
T Consensus 89 -------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 89 -------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred -------cCccccEEccHHHHhhC
Confidence 23456789999888763
No 90
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=7.2e-09 Score=92.93 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=85.0
Q ss_pred ccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031 65 PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS 144 (259)
Q Consensus 65 ~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~ 144 (259)
..+++|...+++. ++ +|++++-....-...|.|-+|+|.++++| ++.++|+||++||||++....+++..-.....
T Consensus 113 sh~vgvg~~V~n~-~~--eVlVv~e~d~~~~~~~~wK~ptG~v~~~e-~i~~gavrEvkeetgid~ef~eVla~r~~H~~ 188 (295)
T KOG0648|consen 113 SHRVGVGAFVLNK-KK--EVLVVQEKDGAVKIRGGWKLPTGRVEEGE-DIWHGAVREVKEETGIDTEFVEVLAFRRAHNA 188 (295)
T ss_pred hhheeeeeeEecC-Cc--eeEEEEecccceeecccccccceEecccc-cchhhhhhhhHHHhCcchhhhhHHHHHhhhcc
Confidence 3567777777763 34 78887644443466789999999999999 99999999999999998777776654333222
Q ss_pred hhc--ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031 145 KYL--LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188 (259)
Q Consensus 145 ~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~ 188 (259)
... ..-..|++.+.. ..+....+..|+..+.|+|+++..+...
T Consensus 189 ~~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~qp~ 233 (295)
T KOG0648|consen 189 TFGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVSQPL 233 (295)
T ss_pred hhhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhcccc
Confidence 222 122234455544 4566677788999999999998887654
No 91
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.40 E-value=1.4e-06 Score=68.87 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=45.2
Q ss_pred EeecCCCceEEEEeeccccc--ccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc
Q 025031 74 LFEGDNGELRVILTKRASRL--STHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS 131 (259)
Q Consensus 74 l~~~~~g~~~vLL~kRs~~~--~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~ 131 (259)
|++..+|.+.|||++-.-.. +..-|-|++|.|-...|| ++..||+||.-||+||.++
T Consensus 10 lYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gE-dp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 10 LYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGE-DPWLAARREFSEEIGICVD 68 (161)
T ss_pred EEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCc-CHHHHHHHHhhhhhceeec
Confidence 34446788899998754321 223478999999999999 9999999999999999764
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.31 E-value=6.6e-07 Score=69.64 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEe
Q 025031 78 DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL 157 (259)
Q Consensus 78 ~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~ 157 (259)
.+| ++||.||... +.++|.|+||.--.+. + +..+.+.+.+.+..|+.....+.++.+.+.+++....+++|.+.+
T Consensus 7 ~~~--~~Ll~kRp~~-gll~GLwefP~~e~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~~ 81 (114)
T PF14815_consen 7 SQG--RVLLEKRPEK-GLLAGLWEFPLIESDE-E-DDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVEV 81 (114)
T ss_dssp TTS--EEEEEE--SS-STTTT-EE--EEE-SS-S--CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEEE
T ss_pred eCC--EEEEEECCCC-ChhhcCcccCEeCccC-C-CCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEEe
Confidence 345 8999999987 7999999999977663 3 335555566668888887777788888888888888888888887
Q ss_pred eccccCCCCCCccchhhhcccchhhhccc
Q 025031 158 HNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
..... .+-....|++++++.+-
T Consensus 82 ~~~~~-------~~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 82 SADPP-------AEPEEGQWVSLEELDQY 103 (114)
T ss_dssp E-SS-----------TTEEEEEGGGGGGS
T ss_pred cCCCC-------CCCCCcEEEEHHHHhhC
Confidence 75321 14578899999998753
No 93
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=1.8e-06 Score=75.33 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=89.7
Q ss_pred ccCccceeEEEE-Eeec-CCCceEEEEeecccccccccceee-cCCCCCCCCCCCchhhhhHHHHHhhCCCCccee---e
Q 025031 62 TFRPKKAAVLVC-LFEG-DNGELRVILTKRASRLSTHSGEVS-LPGGKAEEGDEDDGETATREAKEEIGLDPSLVD---V 135 (259)
Q Consensus 62 ~~~~r~aaVli~-l~~~-~~g~~~vLL~kRs~~~~~~~G~ws-fPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~---~ 135 (259)
.++.+..+|.|- .+.. ..+.+++++.+||.++..|||.|. ..||.+--|. .+.+||+.|..||..|+..... -
T Consensus 126 lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~-gI~eT~iKE~~EEAnl~~~~~~Nlv~ 204 (306)
T KOG4313|consen 126 LFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF-GIKETAIKEAAEEANLPSDLVKNLVS 204 (306)
T ss_pred eeeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc-hHHHHHHHHHHHhcCCchhhHhccee
Confidence 356666777662 2222 345689999999999999999996 4799999999 9999999999999999874322 2
Q ss_pred eeehhhhH--hhhcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 136 VTVIEPFL--SKYLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 136 l~~l~~~~--~~~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
.|..+.+. +.+++ .-.-||+.+.-..++.|+++..||+..-.+++.+..+
T Consensus 205 ~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~ 257 (306)
T KOG4313|consen 205 AGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVE 257 (306)
T ss_pred cceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHH
Confidence 34444332 22221 1334677666666788899999999999999887764
No 94
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.81 E-value=2.7e-05 Score=67.12 Aligned_cols=59 Identities=31% Similarity=0.453 Sum_probs=45.6
Q ss_pred cCccceeEEEEEe-ecCCCc----------eEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhC
Q 025031 63 FRPKKAAVLVCLF-EGDNGE----------LRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127 (259)
Q Consensus 63 ~~~r~aaVli~l~-~~~~g~----------~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~G 127 (259)
+++.+||-=|+-. ..++++ ++++.+||+.. |+|++|||.+|+|| .+-+|..||..||.=
T Consensus 109 wGPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~-----~~WAiPGGmvdpGE-~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 109 WGPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDN-----GEWAIPGGMVDPGE-KVSATLKREFGEEAM 178 (275)
T ss_pred cCCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCC-----CcccCCCCcCCchh-hhhHHHHHHHHHHHH
Confidence 4566666544332 223334 78899999887 89999999999999 999999999999964
No 95
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.73 E-value=2.8e-05 Score=66.06 Aligned_cols=117 Identities=23% Similarity=0.206 Sum_probs=76.1
Q ss_pred ccceeEEEEEeecCCCceEEEEeecccccccccceee-----cCCCCC----CCCCCCchhhhhHHHHHhhCCCCccee-
Q 025031 65 PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVS-----LPGGKA----EEGDEDDGETATREAKEEIGLDPSLVD- 134 (259)
Q Consensus 65 ~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~ws-----fPGG~v----e~gE~s~~~aA~REl~EE~GL~~~~i~- 134 (259)
.-+.|..|.+|+ .++ ++||++|+..+-.+||.|. -|=+.. +........||.|-+.=|+||+.+.+.
T Consensus 50 lLHRaFSVFlFn-s~~--~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~p 126 (225)
T KOG0142|consen 50 LLHRAFSVFLFN-SKN--ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPP 126 (225)
T ss_pred hhhheeeEEEec-Ccc--hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCH
Confidence 345677777887 455 8999999999889999883 343222 221114578999999999999766543
Q ss_pred ----eeeehhhhHh---hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 135 ----VVTVIEPFLS---KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 135 ----~l~~l~~~~~---~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.++.+.+... ..|.+-.-|+-++.. +..+.+|++||+++.||..++|...
T Consensus 127 ee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~--~~~~nPnpnEv~e~ryvs~eelkel 183 (225)
T KOG0142|consen 127 EEFNFLTRIHYKAPSDGIWGEHEIDYILFLVK--DVTLNPNPNEVSEIRYVSREELKEL 183 (225)
T ss_pred HHcccceeeeeecCCCCCcccceeeEEEEEec--cCCCCCChhhhhHhheecHHHHHHH
Confidence 4444322211 123332333333333 3456788899999999999988653
No 96
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.55 E-value=0.00033 Score=65.30 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=78.3
Q ss_pred HHHHHHHhhccCCCCCChHHHHHHHHHhcCceeeeeccccccccccccccccCccceeEEEEEeecCCCceEEEEeeccc
Q 025031 12 LIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRAS 91 (259)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~ 91 (259)
|.++.+....-+-|-+..+.+...-..-..+.+.+++..+++++. +.+...++| +.. ++ +++|.||..
T Consensus 184 lm~lGa~vC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~-------~~~~~~~~~-~~~--~~--~~~l~~r~~ 251 (350)
T PRK10880 184 MMDLGAMVCTRSKPKCELCPLQNGCIAYANHSWALYPGKKPKQTL-------PERTGYFLL-LQH--GD--EVWLEQRPP 251 (350)
T ss_pred HHHhhHHhccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCCCCCC-------CeEEEEEEE-EEE--CC--EEEEEECCc
Confidence 444455555444455555555322111134455566665554432 223333333 222 34 899999987
Q ss_pred ccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeeccccCCCCCCccc
Q 025031 92 RLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGE 171 (259)
Q Consensus 92 ~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~E 171 (259)
. +.+.|.|+||+. +..+ .+++..|+.|+.......++.+.+.+++....++++.+.+..... ..+
T Consensus 252 ~-gl~~gl~~fP~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~~~~~~~~---~~~--- 316 (350)
T PRK10880 252 S-GLWGGLFCFPQF--ADEE------ELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTG---CMD--- 316 (350)
T ss_pred c-ChhhccccCCCC--cchh------hHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEEEcccccc---ccC---
Confidence 6 789999999973 2211 246666888876433333455555556655556666544321100 011
Q ss_pred hhhhcccchhhhccc
Q 025031 172 VEEVFDAPLEMFLKD 186 (259)
Q Consensus 172 v~~v~wvpl~ell~~ 186 (259)
.....|++++++.+-
T Consensus 317 ~~~~~w~~~~~~~~~ 331 (350)
T PRK10880 317 EGNGLWYNLAQPPSV 331 (350)
T ss_pred CcCCeEechHHhccc
Confidence 123359999888763
No 97
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=96.14 E-value=0.0018 Score=59.14 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=57.7
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH-hhhcceeeeEe-eEeecc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL-SKYLLRVVPVI-GILHNR 160 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-~~~~~~v~~~v-~~~~~~ 160 (259)
++||++-- .+.-|+||-|++..+| +..+||.||+.||+|.+....-. ...... .-.+..+.-|+ .-+...
T Consensus 96 r~llv~g~-----qa~sw~fprgK~~kde-sd~~caiReV~eetgfD~skql~--~~e~Ie~nI~dq~~~~fIi~gvs~d 167 (348)
T KOG2937|consen 96 RCLLVKGW-----QASSWSFPRGKISKDE-SDSDCAIREVTEETGFDYSKQLQ--DNEGIETNIRDQLVRLFIINGVSED 167 (348)
T ss_pred hhheeece-----ecccccccCccccccc-hhhhcchhcccchhhcCHHHHhc--cccCcccchhhceeeeeeeccceee
Confidence 67777632 2345999999999999 88999999999999998654211 100010 00111122222 112222
Q ss_pred ccCCCCCCccchhhhcccchhhhcccc
Q 025031 161 KAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 161 ~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
..+.++. -.|++.+.|.-++++....
T Consensus 168 ~~f~~~v-~~eis~ihW~~l~~l~~t~ 193 (348)
T KOG2937|consen 168 TNFNPRV-RKEISKIHWHYLDHLVPTD 193 (348)
T ss_pred eecchhh-hccccceeeeehhhhcccc
Confidence 2233332 2689999999999985543
No 98
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=95.92 E-value=0.03 Score=46.45 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=58.5
Q ss_pred EEEEeecccccc--cccceeec-CCCCCCCCC-CCchh-----hhhHHHHHhhCCC---CcceeeeeehhhhHhhhccee
Q 025031 83 RVILTKRASRLS--THSGEVSL-PGGKAEEGD-EDDGE-----TATREAKEEIGLD---PSLVDVVTVIEPFLSKYLLRV 150 (259)
Q Consensus 83 ~vLL~kRs~~~~--~~~G~wsf-PGG~ve~gE-~s~~~-----aA~REl~EE~GL~---~~~i~~l~~l~~~~~~~~~~v 150 (259)
+||+..|-..-+ .--++.++ -|||+..++ ++..+ .+.||+.||+++. ...++.+|.+..-...-+...
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH 152 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH 152 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence 899999976532 22356777 599999877 22222 2679999999998 445666776644322222211
Q ss_pred eeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 151 VPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 151 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
.-.++.+.... -....-..+.-++.|+.+.++.+
T Consensus 153 iG~lf~~~~k~-ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 153 IGALFLGRGKF-NDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred EEEEEEeeccc-cceeeeecceeeeeeeeHHHHHH
Confidence 12222222211 01111224455788999988875
No 99
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=95.22 E-value=0.032 Score=47.49 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=42.8
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP 130 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~ 130 (259)
+.|+..-.|+++. ..+-++|||.+.... .+-+|||++.+|| +..++..|.+.+-+|...
T Consensus 41 GmRrsVe~Vllvh-~h~~PHvLLLq~~~~------~fkLPGg~l~~gE-~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 41 GMRRSVEGVLLVH-EHGHPHVLLLQIGNT------FFKLPGGRLRPGE-DEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp SSEEEEEEEEEEE-ETTEEEEEEEEETTT------EEE-SEEE--TT---HHHHHHHHHHHHHB-SS
T ss_pred CCceEEEEEEEEe-cCCCcEEEEEeccCc------cccCCccEeCCCC-ChhHHHHHHHHHHcCCCc
Confidence 5577666777776 356789999996543 6999999999999 889999999999999864
No 100
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=93.88 E-value=0.2 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEEeecccccccccceeecCCC
Q 025031 83 RVILTKRASRLSTHSGEVSLPGG 105 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG 105 (259)
++||++|... +.+.|.|+||+.
T Consensus 240 ~~~~~~r~~~-~~~~gl~~~p~~ 261 (275)
T TIGR01084 240 EVLLEQRPEK-GLWGGLYCFPQF 261 (275)
T ss_pred eEEEEeCCCC-chhhccccCCCC
Confidence 8999999876 688999999973
No 101
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=93.23 E-value=0.18 Score=46.69 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=51.9
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
++.+..+++.. +| .++|.+|... +.+.|.|+||....+.+ ..+..-+.|+.. +.++.+.+.+++
T Consensus 235 ~~~~~~~~~~~--~~--~~~l~kr~~~-gl~~gl~~fP~~e~~~~--------~~~~~~~~~~~~---~~~~~~~H~fth 298 (342)
T COG1194 235 RRFAAFLILNR--DG--EVLLEKRPEK-GLLGGLWCFPQFEDEAD--------LLDWLAADGLAA---EPLGAFRHTFTH 298 (342)
T ss_pred hheeeEEEEcc--Cc--chhhhhCccc-Cceecccccccccccch--------hhhHhhhccccc---ccccceeeeeeE
Confidence 44444444333 34 7899888876 78999999998765431 222233334433 345555555555
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
+...+. +.+... . ..- +..|++++++..
T Consensus 299 ~~l~i~-~~a~~~---------~-~~~-~~~w~~~~~~~~ 326 (342)
T COG1194 299 FRLTIE-LRASAS---------L-VLS-DGRWYNLSDLES 326 (342)
T ss_pred EEEEEE-EEeecc---------c-CCC-Cceecccccccc
Confidence 555555 222211 0 111 678999888764
No 102
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=92.59 E-value=0.22 Score=41.67 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=43.3
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCC
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL 128 (259)
+.|++.-.|+++. +..-++|||.+=... ..-+|||.+++|| +-.+...|-+-|-+|=
T Consensus 67 gmRrsvegvlivh-eH~lPHvLLLQig~t------f~KLPGG~L~pGE-~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 67 GMRRSVEGVLIVH-EHNLPHVLLLQIGNT------FFKLPGGRLRPGE-DEADGLKRLLTESLGR 123 (221)
T ss_pred hhhheeeeeEEEe-ecCCCeEEEEeeCCE------EEecCCCccCCCc-chhHHHHHHHHHHhcc
Confidence 4566666666665 334468888774433 5789999999999 8899999999999993
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=88.09 E-value=0.88 Score=41.45 Aligned_cols=83 Identities=20% Similarity=0.090 Sum_probs=50.1
Q ss_pred cCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHhhhcceeeeEeeEeecccc---CCCCCCccchhhhc
Q 025031 102 LPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLSKYLLRVVPVIGILHNRKA---FKPTPNPGEVEEVF 176 (259)
Q Consensus 102 fPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~---~~~~~~~~Ev~~v~ 176 (259)
+-.|.++..= |..+-|.||..||+|.+.. .++.+..+-.-...++-.-+-|...+.+... .--.-+.+|..++.
T Consensus 288 Lcag~Vd~p~-s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv 366 (405)
T KOG4432|consen 288 LCAGRVDDPF-SDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVV 366 (405)
T ss_pred eecccCCCCc-ccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEE
Confidence 3456777654 7788999999999999754 3444444333333344444445555554321 11123456888888
Q ss_pred ccchhhhcc
Q 025031 177 DAPLEMFLK 185 (259)
Q Consensus 177 wvpl~ell~ 185 (259)
-++++++..
T Consensus 367 ~lsle~a~~ 375 (405)
T KOG4432|consen 367 RLSLEDAPS 375 (405)
T ss_pred EechhhhhH
Confidence 899988754
No 104
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=87.73 E-value=0.47 Score=43.14 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=55.5
Q ss_pred CccceeEEEEEeecCCCceEEEEeeccccc---ccc----c----------------c-eeecCCCCCCCCCCCchhhhh
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRL---STH----S----------------G-EVSLPGGKAEEGDEDDGETAT 119 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~---~~~----~----------------G-~wsfPGG~ve~gE~s~~~aA~ 119 (259)
..+-.+|.|+|++.+-. ++||++.-+.. ..| + | .+++-||.+|..- ++.+.|.
T Consensus 23 ~q~~~~v~ill~~r~~e--q~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~-s~~eia~ 99 (405)
T KOG4432|consen 23 NQKMSSVSILLFHRDLE--QFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKEL-SPREIAS 99 (405)
T ss_pred HhhccceEEEEEccchh--hhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeecccccccc-CHHHHhH
Confidence 44567888888875433 56665432210 001 0 1 2356689999875 9999999
Q ss_pred HHHHHhhCCCCcceeeeeehhhhH--hhhcceeeeEeeEeec
Q 025031 120 REAKEEIGLDPSLVDVVTVIEPFL--SKYLLRVVPVIGILHN 159 (259)
Q Consensus 120 REl~EE~GL~~~~i~~l~~l~~~~--~~~~~~v~~~v~~~~~ 159 (259)
.|+.||.|..+..-.++..+.... ..++...+.|.+.+++
T Consensus 100 eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e 141 (405)
T KOG4432|consen 100 EEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE 141 (405)
T ss_pred HHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence 999999999876554444433221 1123334556666554
No 105
>PF14443 DBC1: DBC1
Probab=85.17 E-value=0.92 Score=36.18 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=37.5
Q ss_pred eEEEEeecccccccccceeec--CCCCCCCCCCCchhhhhHHHHHhhCCCCcce
Q 025031 82 LRVILTKRASRLSTHSGEVSL--PGGKAEEGDEDDGETATREAKEEIGLDPSLV 133 (259)
Q Consensus 82 ~~vLL~kRs~~~~~~~G~wsf--PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i 133 (259)
+++|+.+|.+....-.|.|+- =||-.+.+...+..||+|=++|-|||+.+.-
T Consensus 8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~C 61 (126)
T PF14443_consen 8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNC 61 (126)
T ss_pred eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhc
Confidence 456666666544444577854 4666666666789999999999999998653
No 106
>PRK13910 DNA glycosylase MutY; Provisional
Probab=83.34 E-value=3.2 Score=37.83 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=41.5
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+++|.||. .+.+.|.|+||+. + + . .+... ..++.+.+.+++....++++.+.+..
T Consensus 198 ~~ll~kr~--~~l~~gl~~fP~~--~--~-~------------~~~~~---~~~~~~~H~fTH~~~~~~~~~~~~~~--- 252 (289)
T PRK13910 198 QIALEKIE--QKLYLGMHHFPNL--K--E-N------------LEYKL---PFLGAIKHSHTKFKLNLNLYLAAIKD--- 252 (289)
T ss_pred EEEEEECC--CchhcccccCCCC--h--h-h------------hcccc---cccCceEEEEEeEEEEEEEEEEEecc---
Confidence 89999995 3689999999963 2 1 1 11111 12344455556666666666554321
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
. -....|++++++.+-
T Consensus 253 -----~---~~~~~w~~~~~~~~~ 268 (289)
T PRK13910 253 -----L---KNPIRFYSLKDLETL 268 (289)
T ss_pred -----C---CccceEecHHHhhhc
Confidence 0 123479998887653
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=60.11 E-value=6.1 Score=25.05 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCchhhhhHHHHHhh
Q 025031 103 PGGKAEEGDEDDGETATREAKEEI 126 (259)
Q Consensus 103 PGG~ve~gE~s~~~aA~REl~EE~ 126 (259)
-||-.-+|- -+..+|+||+-||+
T Consensus 14 lggLasPgP-vp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGP-VPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred hcccCCCCC-CCchHHHHHHHHHH
Confidence 477777777 78889999999996
No 108
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=47.04 E-value=13 Score=40.40 Aligned_cols=31 Identities=39% Similarity=0.547 Sum_probs=23.8
Q ss_pred eecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee
Q 025031 100 VSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT 137 (259)
Q Consensus 100 wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~ 137 (259)
+.||-|. ..+..+||+++|+||.++.+..+.
T Consensus 270 vTfP~G~-------~Q~qLi~e~Yse~Gl~P~sv~YvE 300 (2376)
T KOG1202|consen 270 VTFPSGD-------MQEQLIRETYSEAGLNPESVVYVE 300 (2376)
T ss_pred ccCCCcH-------HHHHHHHHHHHhcCCCcccEEEEE
Confidence 5566554 456789999999999998877653
No 109
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=33.23 E-value=53 Score=29.38 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=34.3
Q ss_pred EEEEeecccccccccceeecCCCCC-CCCCCCchhhhhHHHHHhhCCCCc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKA-EEGDEDDGETATREAKEEIGLDPS 131 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~v-e~gE~s~~~aA~REl~EE~GL~~~ 131 (259)
-+||++|.-. ..+.|-||-+.. +.++ ++..+|.|++.+-.|=...
T Consensus 140 LyLLV~~k~g---~~s~w~fP~~~~s~~~~-~lr~~ae~~Lk~~~ge~~~ 185 (263)
T KOG4548|consen 140 LYLLVKRKFG---KSSVWIFPNRQFSSSEK-TLRGHAERDLKVLSGENKS 185 (263)
T ss_pred EEEEEeeccC---ccceeeCCCcccCCccc-hHHHHHHHHHHHHhcchhh
Confidence 4666664422 235899999999 8888 9999999999998885443
No 110
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.54 E-value=48 Score=22.87 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=15.8
Q ss_pred eecCCCCCCCCCCCchhhhhHHHHH
Q 025031 100 VSLPGGKAEEGDEDDGETATREAKE 124 (259)
Q Consensus 100 wsfPGG~ve~gE~s~~~aA~REl~E 124 (259)
|-+|||.+-..- -.|.|.++|
T Consensus 24 Wl~Pgg~vi~NP----lkAqR~AE~ 44 (60)
T PF07026_consen 24 WLMPGGKVITNP----LKAQRLAEE 44 (60)
T ss_pred eecCCCeeEcCH----HHHHHHHHH
Confidence 999999998533 457887754
No 111
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=21.17 E-value=3.2e+02 Score=24.73 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=39.9
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHH-HHhhCCCCcceeeeeehh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREA-KEEIGLDPSLVDVVTVIE 140 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl-~EE~GL~~~~i~~l~~l~ 140 (259)
-.||+|.+.+ |+++||-+. .. -.+|-|-.|+.- .-.++.+|.- .+.|+.+...++.|.++-
T Consensus 25 LiaVvvAv~~---~~p~VLtV~-q~--------~aLP~GPfep~h-rslq~glr~wV~~qT~~plGYiEQLYTF~ 86 (322)
T COG4111 25 LIAVVVAVTD---GGPRVLTVR-QG--------AALPSGPFEPAH-RSLQAGLRAWVEKQTSQPLGYIEQLYTFA 86 (322)
T ss_pred eeEEEEEEcC---CCceEEEec-cc--------ccCCCCCCchHH-HHHHHHHHHHHHHHhcCccchHHhhhhhc
Confidence 3456665543 456766554 32 239999999987 5566677765 566888887777665543
Done!