Query 025031
Match_columns 259
No_of_seqs 461 out of 2128
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nqz_A COA pyrophosphatase (MU 100.0 1.9E-30 6.4E-35 218.8 7.0 162 64-234 32-194 (194)
2 3h95_A Nucleoside diphosphate- 99.8 1.5E-19 5E-24 153.0 7.1 154 66-230 25-185 (199)
3 3shd_A Phosphatase NUDJ; nudix 99.8 4.1E-19 1.4E-23 142.9 8.5 107 67-183 5-112 (153)
4 4dyw_A MUTT/nudix family prote 99.8 8.2E-19 2.8E-23 142.7 6.9 112 66-186 28-141 (157)
5 3grn_A MUTT related protein; s 99.7 1.5E-18 5E-23 140.0 7.5 113 67-187 8-120 (153)
6 2fkb_A Putative nudix hydrolas 99.7 1.7E-18 5.8E-23 143.3 7.6 115 64-186 34-149 (180)
7 2w4e_A MUTT/nudix family prote 99.7 1.1E-18 3.6E-23 140.2 5.7 113 67-186 5-117 (145)
8 3gwy_A Putative CTP pyrophosph 99.7 2.3E-18 8E-23 136.8 7.4 99 83-187 18-117 (140)
9 1sjy_A MUTT/nudix family prote 99.7 3E-18 1E-22 138.3 7.7 115 66-186 12-130 (159)
10 3exq_A Nudix family hydrolase; 99.7 3.8E-18 1.3E-22 139.3 8.2 113 66-186 9-121 (161)
11 3ees_A Probable pyrophosphohyd 99.7 2.7E-18 9.3E-23 137.4 6.8 109 69-187 23-131 (153)
12 3i7u_A AP4A hydrolase; nudix p 99.7 1.4E-18 4.9E-23 138.3 5.0 93 83-186 16-112 (134)
13 2yvp_A NDX2, MUTT/nudix family 99.7 2.3E-18 8E-23 143.0 6.2 116 65-186 39-154 (182)
14 3gg6_A Nudix motif 18, nucleos 99.7 3.5E-18 1.2E-22 138.1 6.8 109 69-186 22-130 (156)
15 3oga_A Nucleoside triphosphata 99.7 7.9E-18 2.7E-22 137.3 8.7 113 68-186 28-149 (165)
16 1mut_A MUTT, nucleoside tripho 99.7 3.8E-18 1.3E-22 132.7 6.3 97 83-186 17-113 (129)
17 1x51_A A/G-specific adenine DN 99.7 5E-18 1.7E-22 137.3 6.8 126 44-185 4-132 (155)
18 1ktg_A Diadenosine tetraphosph 99.7 5.7E-18 2E-22 133.6 6.7 110 69-186 5-118 (138)
19 3f6a_A Hydrolase, nudix family 99.7 1.3E-17 4.4E-22 135.4 7.8 109 66-187 5-134 (159)
20 3q93_A 7,8-dihydro-8-oxoguanin 99.7 1.1E-17 3.8E-22 138.9 7.3 146 66-227 24-175 (176)
21 1hzt_A Isopentenyl diphosphate 99.7 7.6E-18 2.6E-22 141.1 5.8 113 66-186 31-150 (190)
22 1rya_A GDP-mannose mannosyl hy 99.7 1E-17 3.5E-22 135.4 6.3 111 68-187 19-139 (160)
23 1vhz_A ADP compounds hydrolase 99.7 1.2E-17 4.1E-22 141.6 6.8 113 66-186 48-160 (198)
24 1v8y_A ADP-ribose pyrophosphat 99.7 1.1E-17 3.8E-22 137.6 6.4 111 67-186 34-144 (170)
25 3eds_A MUTT/nudix family prote 99.7 5.8E-18 2E-22 136.9 4.6 109 66-187 20-136 (153)
26 3hhj_A Mutator MUTT protein; n 99.7 1.6E-17 5.4E-22 134.6 7.1 108 69-186 31-140 (158)
27 3r03_A Nudix hydrolase; struct 99.7 2E-17 6.7E-22 131.4 7.3 109 69-187 10-120 (144)
28 1q27_A Putative nudix hydrolas 99.7 2.2E-17 7.4E-22 135.5 7.6 111 67-185 34-147 (171)
29 2rrk_A ORF135, CTP pyrophospho 99.7 1.2E-17 4.2E-22 131.8 5.8 97 83-186 21-117 (140)
30 2dsc_A ADP-sugar pyrophosphata 99.7 3.1E-17 1.1E-21 140.2 8.5 117 68-186 63-183 (212)
31 1vcd_A NDX1; nudix protein, di 99.7 1.7E-17 5.9E-22 128.8 6.1 104 69-186 4-107 (126)
32 3o6z_A GDP-mannose pyrophospha 99.7 1.8E-17 6E-22 139.6 6.6 116 66-186 44-166 (191)
33 3i9x_A MUTT/nudix family prote 99.7 8.1E-18 2.8E-22 140.7 4.4 103 81-185 45-154 (187)
34 2b0v_A Nudix hydrolase; struct 99.7 1.6E-17 5.3E-22 133.3 5.8 111 67-186 8-120 (153)
35 3u53_A BIS(5'-nucleosyl)-tetra 99.7 4.1E-17 1.4E-21 132.2 8.2 101 79-186 21-125 (155)
36 2b06_A MUTT/nudix family prote 99.7 3.1E-17 1.1E-21 132.2 7.4 111 67-186 8-119 (155)
37 3id9_A MUTT/nudix family prote 99.7 4.3E-17 1.5E-21 133.7 7.4 112 66-186 22-135 (171)
38 2pbt_A AP4A hydrolase; nudix p 99.7 2E-17 6.9E-22 129.6 5.1 103 69-186 6-112 (134)
39 1mk1_A ADPR pyrophosphatase; n 99.7 2.5E-17 8.6E-22 140.3 5.3 116 66-186 42-158 (207)
40 1g0s_A Hypothetical 23.7 kDa p 99.7 6.2E-17 2.1E-21 138.3 7.6 118 66-186 56-179 (209)
41 3q91_A Uridine diphosphate glu 99.7 3.7E-17 1.3E-21 141.1 6.0 118 66-186 35-188 (218)
42 3son_A Hypothetical nudix hydr 99.7 8.7E-17 3E-21 128.8 7.6 110 69-186 7-124 (149)
43 2fb1_A Conserved hypothetical 99.7 7.9E-17 2.7E-21 139.5 7.5 114 67-186 13-128 (226)
44 2azw_A MUTT/nudix family prote 99.7 7.1E-17 2.4E-21 128.6 6.0 107 67-186 18-130 (148)
45 1f3y_A Diadenosine 5',5'''-P1, 99.7 1.4E-16 4.8E-21 128.9 7.3 113 66-187 13-146 (165)
46 2o1c_A DATP pyrophosphohydrola 99.7 1.5E-16 5.2E-21 126.5 7.3 109 67-186 9-132 (150)
47 2yyh_A MUTT domain, 8-OXO-DGTP 99.6 2.3E-16 7.9E-21 124.9 7.8 91 84-184 27-119 (139)
48 3dup_A MUTT/nudix family prote 99.6 1.3E-16 4.5E-21 143.7 6.9 122 62-186 113-242 (300)
49 2jvb_A Protein PSU1, mRNA-deca 99.6 2.1E-16 7.1E-21 126.0 7.0 105 72-186 9-114 (146)
50 3q1p_A Phosphohydrolase (MUTT/ 99.6 2.9E-16 1E-20 133.6 7.9 109 64-186 65-178 (205)
51 3o8s_A Nudix hydrolase, ADP-ri 99.6 2.3E-16 7.8E-21 134.3 6.6 109 64-187 67-180 (206)
52 3gz5_A MUTT/nudix family prote 99.6 1.2E-16 4E-21 139.6 4.4 112 68-185 23-138 (240)
53 3fcm_A Hydrolase, nudix family 99.6 4.3E-16 1.5E-20 131.3 7.4 111 66-186 44-167 (197)
54 1vk6_A NADH pyrophosphatase; 1 99.6 4.6E-16 1.6E-20 138.3 7.4 116 58-186 131-246 (269)
55 3cng_A Nudix hydrolase; struct 99.6 1.1E-15 3.6E-20 128.2 8.5 106 66-184 39-144 (189)
56 2dho_A Isopentenyl-diphosphate 99.6 6E-16 2E-20 134.9 7.2 115 64-186 56-190 (235)
57 1u20_A U8 snoRNA-binding prote 99.6 6.4E-17 2.2E-21 138.6 0.2 135 68-230 45-191 (212)
58 2fvv_A Diphosphoinositol polyp 99.6 2.7E-16 9.2E-21 133.0 4.0 95 83-185 55-149 (194)
59 2pny_A Isopentenyl-diphosphate 99.6 8.8E-16 3E-20 134.8 7.1 115 64-186 67-201 (246)
60 3f13_A Putative nudix hydrolas 99.6 1.5E-15 5.1E-20 125.0 7.7 84 83-182 28-111 (163)
61 3qsj_A Nudix hydrolase; struct 99.6 5.9E-16 2E-20 134.8 5.1 68 64-131 6-92 (232)
62 2pqv_A MUTT/nudix family prote 99.6 8.7E-16 3E-20 123.6 5.0 105 69-186 21-129 (154)
63 2kdv_A RNA pyrophosphohydrolas 99.6 2.7E-15 9.1E-20 123.1 7.9 111 66-186 7-135 (164)
64 3fsp_A A/G-specific adenine gl 99.6 1.3E-15 4.4E-20 140.9 6.6 96 78-186 250-345 (369)
65 2a6t_A SPAC19A8.12; alpha/beta 99.6 1.6E-15 5.3E-20 134.9 5.5 111 68-187 102-213 (271)
66 3fjy_A Probable MUTT1 protein; 99.6 3.1E-15 1E-19 137.7 7.3 102 80-187 36-159 (364)
67 2fml_A MUTT/nudix family prote 99.6 6E-15 2.1E-19 131.1 8.3 98 81-185 55-156 (273)
68 3fk9_A Mutator MUTT protein; s 99.6 4.5E-15 1.5E-19 124.5 7.0 94 83-186 16-114 (188)
69 2qjo_A Bifunctional NMN adenyl 99.5 5.9E-15 2E-19 133.6 5.8 112 66-185 202-321 (341)
70 1k2e_A Nudix homolog; nudix/MU 99.5 6.7E-15 2.3E-19 119.2 4.7 49 83-137 13-61 (156)
71 3e57_A Uncharacterized protein 99.5 2.8E-15 9.5E-20 128.7 2.3 98 83-186 80-188 (211)
72 2qjt_B Nicotinamide-nucleotide 99.5 1.8E-14 6.1E-19 131.2 7.0 115 64-185 205-328 (352)
73 2xsq_A U8 snoRNA-decapping enz 99.4 1.9E-14 6.4E-19 124.0 2.2 125 83-231 66-200 (217)
74 1q33_A Pyrophosphatase, ADP-ri 99.3 8.2E-13 2.8E-17 118.5 5.1 45 80-130 137-181 (292)
75 3bho_A Cleavage and polyadenyl 98.9 5.8E-10 2E-14 94.5 4.1 58 63-128 55-112 (208)
76 3kvh_A Protein syndesmos; NUDT 98.8 1.2E-09 4.3E-14 91.7 3.7 68 83-157 45-113 (214)
77 3rh7_A Hypothetical oxidoreduc 98.5 1.1E-07 3.8E-12 86.2 6.5 93 68-187 184-277 (321)
78 3ggz_E Vacuolar protein-sortin 25.2 21 0.00073 20.2 0.6 12 12-23 17-28 (29)
No 1
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.96 E-value=1.9e-30 Score=218.77 Aligned_cols=162 Identities=28% Similarity=0.435 Sum_probs=120.1
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL 143 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~ 143 (259)
..+.++|+|++ + .+|+.+|||++|+..++.++|.|+||||++|.|| ++.+||+||++|||||.+..+..++.+....
T Consensus 32 ~~~~~~~~v~i-~-~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~ 108 (194)
T 1nqz_A 32 HYRRAAVLVAL-T-READPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEEVALDPAAVTLLGELDDVF 108 (194)
T ss_dssp -CEEEEEEEEE-E-SSSSCBBCEEEEC------CCCEECSEEECCTTC-CHHHHHHHHHHHHHCCCGGGCEEEEECCCEE
T ss_pred CCceEEEEEEE-e-cCCCeEEEEEEecCCCCCCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEccCcc
Confidence 34566776666 4 4555689999999876788999999999999999 9999999999999999999999888877655
Q ss_pred hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhh-cccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhH
Q 025031 144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF-LKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITA 222 (259)
Q Consensus 144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el-l~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa 222 (259)
...+..++.|++.+..... ....+.+|+.++.|++++++ .+..++....+ +.+..+.+++|.+ +++.|||+||
T Consensus 109 ~~~~~~~~~f~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~iWg~ta 182 (194)
T 1nqz_A 109 TPVGFHVTPVLGRIAPEAL-DTLRVTPEVAQIITPTLAELRAVPLVRERRTL-PDGTEVPLYRYPW----RGLDIWGMTA 182 (194)
T ss_dssp ETTTEEEEEEEEEECGGGG-GGCCCCTTEEEEECCBHHHHHHSCCEEEEEEC-TTSCEEEEEEEEE----TTEEEEHHHH
T ss_pred CCCCeEEEEEEEEecCCcc-ccCCCccceeEEEEEEHHHhccCCCcceeEEe-cCCcEEEEEEecc----CCcEEehhHH
Confidence 5556677888887653211 03457789999999999999 88776554332 3455567888888 4689999999
Q ss_pred hhhhhhceeeee
Q 025031 223 AILVRAASVVYQ 234 (259)
Q Consensus 223 ~il~~~~~~~~~ 234 (259)
+||.+++.++.|
T Consensus 183 ~il~~~~~~~~~ 194 (194)
T 1nqz_A 183 RVLHDLLEQGPG 194 (194)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 2
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=153.05 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=97.9
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL-- 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-- 143 (259)
.+.+|.++++..+++ +|||++|.. .++|.|+||||++|+|| ++.+||+||++|||||.+....+++....+.
T Consensus 25 ~~v~v~~~v~~~~~~--~vLL~~r~~---~~~g~w~lPGG~ve~gE-s~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~ 98 (199)
T 3h95_A 25 HQVGVAGAVFDESTR--KILVVQDRN---KLKNMWKFPGGLSEPEE-DIGDTAVREVFEETGIKSEFRSVLSIRQQHTNP 98 (199)
T ss_dssp -CCEEEEEEEETTTT--EEEEEEESS---SSTTSBBCCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECC---
T ss_pred ccceEEEEEEeCCCC--EEEEEEEcC---CCCCCEECCccccCCCC-CHHHHHHHHHHHHhCCccccceEEEEEeeecCC
Confidence 455666666664444 899999865 35799999999999999 9999999999999999988777776432222
Q ss_pred hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhH-----HHHhhcccceeeeeeeeeccCceEEee
Q 025031 144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRV-----EEKEWMGEKYLLHYFNYEQKNKKYLIW 218 (259)
Q Consensus 144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~-----~~~~~~g~~~~~~~f~~~~~~~~~~IW 218 (259)
.........|++.+... ...+.++++|+.++.|+|++++.+...... ...-+.+....+....+ ....+|
T Consensus 99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~ 173 (199)
T 3h95_A 99 GAFGKSDMYIICRLKPY-SFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDL----TVEELP 173 (199)
T ss_dssp ------CEEEEEEEEES-CCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHHHHHHHCGGGTCE----EEEEEE
T ss_pred CCceeEEEEEEEEEcCC-CcccCCCccceeeeEEEeHHHHhhhhhcChHHHHHHHHHHhhhhcCCCcccc----cHHHHH
Confidence 11222233444444332 234456789999999999999986432111 11112222211112222 245799
Q ss_pred ehhHhhhhhhce
Q 025031 219 GITAAILVRAAS 230 (259)
Q Consensus 219 GlTa~il~~~~~ 230 (259)
++++.|+.++..
T Consensus 174 ~v~~~i~~~l~~ 185 (199)
T 3h95_A 174 AVYTGLFYKLYH 185 (199)
T ss_dssp CSSSSCEEEEEE
T ss_pred HHHhhHHHHHHh
Confidence 999998877654
No 3
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.78 E-value=4.1e-19 Score=142.92 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=79.6
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-h
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-K 145 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~ 145 (259)
+++|.+++.+ ++ +|||++|. ..++|.|+||||++|.|| |+.+||+||++||||+.+....+++....... .
T Consensus 5 ~~~v~~ii~~--~~--~vLl~~r~---~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 76 (153)
T 3shd_A 5 HVTVACVVHA--EG--KFLVVEET---INGKALWNQPAGHLEADE-TLVEAAARELWEETGISAQPQHFIRMHQWIAPDK 76 (153)
T ss_dssp EEEEEEEEEE--TT--EEEEEEEE---ETTEEEEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTS
T ss_pred ceEEEEEEEe--CC--EEEEEEec---CCCCCCEECCeEEeCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEEecCCC
Confidence 3455554444 34 89999997 246789999999999999 99999999999999999988888877643322 2
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhh
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF 183 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el 183 (259)
.....+.|++.+... ....++.+|+.++.|++++++
T Consensus 77 ~~~~~~~f~~~~~~~--~~~~~~~~E~~~~~W~~~~el 112 (153)
T 3shd_A 77 TPFLRFLFAIELEQI--CPTQPHDSDIDCCRWVSAEEI 112 (153)
T ss_dssp CCEEEEEEEEECSSC--CCCCCCSTTCCEEEEECHHHH
T ss_pred ceEEEEEEEEEcccc--CcCCCCcccceeeEEecHHHh
Confidence 223334555655432 223566789999999999999
No 4
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.75 E-value=8.2e-19 Score=142.69 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=83.9
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS- 144 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~- 144 (259)
.+.+|.+++++ ++ +|||++|... .++|.|+||||++|.|| ++.+||+||++|||||.+....+++.+.....
T Consensus 28 ~~~~v~~vi~~--~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 100 (157)
T 4dyw_A 28 PRVGCGAAIVR--DG--RILLIKRKRA--PEAGCWGLPGGKVDWLE-PVERAVCREIEEELGIALERATLLCVVDHIDAA 100 (157)
T ss_dssp CEEEEEEEEEE--TT--EEEEEEECSS--SSTTCEECCEEECCTTC-CHHHHHHHHHHHHHSCEEESCEEEEEEEEEETT
T ss_pred ceeEEEEEEEE--CC--EEEEEEecCC--CCCCEEECCcccCCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEeeccC
Confidence 45666666666 34 8999999965 37899999999999999 99999999999999999988888887665543
Q ss_pred -hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 145 -KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 145 -~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
......+.|++.+.... ....+++|+.++.|++++++.+.
T Consensus 101 ~~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~ 141 (157)
T 4dyw_A 101 NGEHWVAPVYLAHAFSGE--PRVVEPDRHEALGWFALDDLPQP 141 (157)
T ss_dssp TTEEEEEEEEEESEEESC--CCCSCTTTEEEEEEEETTSCCSS
T ss_pred CCcEEEEEEEEEEEcCCC--cccCCCCcEeEEEEECHHHcccc
Confidence 22233445555443321 11235689999999999999873
No 5
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.75 E-value=1.5e-18 Score=140.02 Aligned_cols=113 Identities=23% Similarity=0.214 Sum_probs=85.2
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY 146 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~ 146 (259)
+.+|.+++++ .++ +|||++|+...+.++|.|+||||++|.|| ++.+||+||++||||+.+....+++.+.......
T Consensus 8 ~~~v~~vi~~-~~~--~vLL~~r~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~ 83 (153)
T 3grn_A 8 IISVYALIRN-EKG--EFLLLRRSENSRTNAGKWDLPGGKVNPDE-SLKEGVAREVWEETGITMVPGDIAGQVNFELTEK 83 (153)
T ss_dssp EEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSC
T ss_pred EEEEEEEEEc-CCC--cEEEEEEcCCCCCCCCeEECceeecCCCC-CHHHHHHhhhhhhhCcEeecceEEEEEEEecCCc
Confidence 4555555555 345 89999999876688999999999999999 9999999999999999999888888766444433
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
...++.|.+..... .+.+ .+|+.++.|++++++.+..
T Consensus 84 ~~~~~~~~~~~~~~---~~~~-~~e~~~~~W~~~~el~~~~ 120 (153)
T 3grn_A 84 KVIAIVFDGGYVVA---DVKL-SYEHIEYSWVSLEKILGME 120 (153)
T ss_dssp EEEEEEEEEEECCC---CCCC-CTTEEEEEEECHHHHTTCS
T ss_pred eEEEEEEEEEecCC---cEec-CCCcceEEEEEHHHhhhcc
Confidence 33444454443321 2233 3789999999999998754
No 6
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.75 E-value=1.7e-18 Score=143.28 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=85.7
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF 142 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~ 142 (259)
+..+.++.+++++ .+| +|||++|+.....++|.|+| |||++|.|| ++.+||+||++||||+....+..++.+...
T Consensus 34 ~~~~~~~~v~i~~-~~~--~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~ 109 (180)
T 2fkb_A 34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQADE-QLLESARREAEEELGIAGVPFAEHGQFYFE 109 (180)
T ss_dssp TCCEEEEEEEEEC-SSS--CEEEEEECSSCSSSTTCEESSBCCBCBTTC-CHHHHHHHHHHHHHCCBSCCCEEEEEEEEE
T ss_pred CceeeEEEEEEEC-CCC--EEEEEECCCCCccCCCcEEeecCCCCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEEEec
Confidence 3345566666665 345 79999998776677999999 999999999 999999999999999988888777765433
Q ss_pred HhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 143 LSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 143 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.......++.|++.. ...+.++.+|+.++.|++++++.+.
T Consensus 110 ~~~~~~~~~~f~~~~----~~~~~~~~~E~~~~~W~~~~el~~~ 149 (180)
T 2fkb_A 110 DKNCRVWGALFSCVS----HGPFALQEDEVSEVCWLTPEEITAR 149 (180)
T ss_dssp ETTEEEEEEEEEEEC----CCCCCCCTTTEEEEEEECHHHHHTT
T ss_pred CCCceEEEEEEEEec----CCCcCCChhHhheEEEecHHHHHHH
Confidence 332333344454442 1234557789999999999999864
No 7
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.74 E-value=1.1e-18 Score=140.24 Aligned_cols=113 Identities=20% Similarity=0.172 Sum_probs=75.2
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY 146 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~ 146 (259)
..+|.|++++ .+| +|||++|... ...++.|+||||++|+|| |+.+||+||++||||+.+..+..++.+.......
T Consensus 5 ~~~v~vi~~~-~~~--~vLLv~~~r~-~~~~~~w~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~ 79 (145)
T 2w4e_A 5 PRAVFILPVT-AQG--EAVLIRQFRY-PLRATITEIVAGGVEKGE-DLGAAAARELLEEVGGAASEWVPLPGFYPQPSIS 79 (145)
T ss_dssp CEEEEEEEEE-TTS--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTC
T ss_pred CCEEEEEEEc-CCC--EEEEEEEEec-CCCCCEEEeCCccCCCCC-CHHHHHHHHHHHhhCCccCeEEEEecCcCCCCcc
Confidence 3466666665 345 7888765433 235679999999999999 9999999999999999988887777643322222
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
...++.|++..... ....++++|+.++.|+|++++.+.
T Consensus 80 ~~~~~~f~~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~ 117 (145)
T 2w4e_A 80 GVVFYPLLALGVTL--GAAQLEDTETIERVVLPLAEVYRM 117 (145)
T ss_dssp CCEEEEEEEEEEEE--C--------CEEEEEEEHHHHHHH
T ss_pred CceEEEEEEEeccc--CCCCCCCCCeEEEEEEeHHHHHHH
Confidence 33455666552221 123457789999999999999764
No 8
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.74 E-value=2.3e-18 Score=136.83 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=74.8
Q ss_pred EEEEeeccccccc-ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeeccc
Q 025031 83 RVILTKRASRLST-HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRK 161 (259)
Q Consensus 83 ~vLL~kRs~~~~~-~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~ 161 (259)
+|||++|+..... ++|.|+||||++|+|| ++.+||+||++||||+.+.....++.+..........++.|++.+...
T Consensus 18 ~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~- 95 (140)
T 3gwy_A 18 KYLCVQRGQTKFSYTSFRYEFPGGKVEEGE-SLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLCHPVGQ- 95 (140)
T ss_dssp EEEEEEC---------CCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEEEEEEEEEECCS-
T ss_pred EEEEEEecCCCCCCCCCeEECCCccCCCCC-CHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEEEEEEEEEecCC-
Confidence 8999999976221 8899999999999999 999999999999999999888888886655555555566666665432
Q ss_pred cCCCCCCccchhhhcccchhhhcccc
Q 025031 162 AFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 162 ~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.++.+|+.++.|++++++.+..
T Consensus 96 ----~~~~~E~~~~~W~~~~el~~~~ 117 (140)
T 3gwy_A 96 ----RYVLKEHIAAQWLSTREMAILD 117 (140)
T ss_dssp ----CCCCCSSCEEEEECHHHHTTSC
T ss_pred ----cccccccceeEeccHHHHhhCC
Confidence 2345789999999999997743
No 9
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.74 E-value=3e-18 Score=138.31 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=84.3
Q ss_pred cceeEEEEEeecCCCceEEEEeecccc--cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASR--LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~--~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~ 143 (259)
.+.+|.+++++ .++ +|||++|... ...++|.|+||||++|.|| ++.+||+||++||||+.+..+.+++.+...+
T Consensus 12 ~~~~~~~vi~~-~~~--~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~ 87 (159)
T 1sjy_A 12 ELRAAGVVLLN-ERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETGLRVRPVKFLGAYLGRF 87 (159)
T ss_dssp CEEEEEEEEBC-TTC--CEEEEEESCC----CCCCCEECSEEECCTTS-CHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred EEEeEEEEEEe-CCC--CEEEEEecccCcCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHHCccceeeEEEEEEeccc
Confidence 34455555665 345 7999999862 3457899999999999999 9999999999999999998888888765433
Q ss_pred hh-hcceeeeEeeEeeccccCCCCC-Cccchhhhcccchhhhccc
Q 025031 144 SK-YLLRVVPVIGILHNRKAFKPTP-NPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 ~~-~~~~v~~~v~~~~~~~~~~~~~-~~~Ev~~v~wvpl~ell~~ 186 (259)
+. ....++.|++.+.... .+.+ +.+|+.++.|++++++.+.
T Consensus 88 ~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~ 130 (159)
T 1sjy_A 88 PDGVLILRHVWLAEPEPGQ--TLAPAFTDEIAEASFVSREDFAQL 130 (159)
T ss_dssp TTSCEEEEEEEEEEECSSC--CCCCCCCSSEEEEEEECHHHHHHH
T ss_pred CCCceEEEEEEEEEccCCC--ccccCCCCceeEEEEecHHHHHHh
Confidence 32 3344555666554321 1344 6789999999999998763
No 10
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.74 E-value=3.8e-18 Score=139.28 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=82.6
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
.+.+|.+++++++++ +|||++|+. ..|.|.|+||||++|+|| ++.+||+||++|||||.+....+++.+......
T Consensus 9 ~~~~v~~vi~~~~~~--~vLL~~r~~--~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 83 (161)
T 3exq_A 9 VELVTMVMVTDPETQ--RVLVEDKVN--VPWKAGHSFPGGHVEVGE-PCATAAIREVFEETGLRLSGVTFCGTCEWFDDD 83 (161)
T ss_dssp EEEEEEEEEBCTTTC--CEEEECCCC--CTTTCSBBCCCCBCCTTS-CHHHHHHHHHHHHHCCEESCCEEEEEEEEECSS
T ss_pred ceEEEEEEEEeCCCC--EEEEEEccC--CCCCCCEEccceecCCCC-CHHHHHHHHHHHhhCcEecCCcEEEEEecccCC
Confidence 445666666654324 899999984 478889999999999999 999999999999999999888888877654422
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.+.....+++..... .. .+...|+.++.|++++++.+.
T Consensus 84 ~~~~~~~~~~~~~~~-~~--~~~~~e~~~~~W~~~~el~~~ 121 (161)
T 3exq_A 84 RQHRKLGLLYRASNF-TG--TLKASAEGQLSWLPITALTRE 121 (161)
T ss_dssp CSSEEEEEEEEECCE-ES--CCCGGGTTTEEEECGGGCCTT
T ss_pred CCeEEEEEEEEEecc-CC--ccCCCccceEEEeeHHHhhhC
Confidence 333333333333221 11 245678899999999999774
No 11
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.73 E-value=2.7e-18 Score=137.39 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=83.1
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL 148 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~ 148 (259)
.|.++++.. +| +|||++|... +.++|.|+||||++|.|| ++.+||+||+.||||+.+....+++...+.++....
T Consensus 23 ~~~~~i~~~-~~--~vLl~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 97 (153)
T 3ees_A 23 PVVAGFLRK-DG--KILVGQRPEN-NSLAGQWEFPGGKIENGE-TPEEALARELNEELGIEAEVGELKLACTHSYGDVGI 97 (153)
T ss_dssp EEEEEEEEE-TT--EEEEEECCTT-STTTTCEECSEEECCTTC-CHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEE
T ss_pred EEEEEEEEE-CC--EEEEEEeCCC-CCCCCeEECCceeeCCCC-CHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeE
Confidence 333334442 35 8999999876 578999999999999999 999999999999999998888888776555554444
Q ss_pred eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.++.|.+.+... .++.+|+.++.|++++++.+..
T Consensus 98 ~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~ 131 (153)
T 3ees_A 98 LILFYEILYWKG-----EPRAKHHMMLEWIHPEELKHRN 131 (153)
T ss_dssp EEEEEEECEEES-----CCCCSSSSEEEEECGGGGGGSC
T ss_pred EEEEEEEEECCC-----CcCCCccceEEEecHHHhhhCC
Confidence 555555554332 2456789999999999997643
No 12
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.73 E-value=1.4e-18 Score=138.34 Aligned_cols=93 Identities=28% Similarity=0.291 Sum_probs=70.7
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc----ceeeeEeeEee
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL----LRVVPVIGILH 158 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~----~~v~~~v~~~~ 158 (259)
+|||++|.. |.|+||||++|+|| |+.+||+||++|||||.+.....++.....+...+ ..++.|++...
T Consensus 16 ~vLL~~r~~------g~W~~PgG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 88 (134)
T 3i7u_A 16 EVLLIKTPS------NVWSFPKGNIEPGE-KPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKYYLMKYK 88 (134)
T ss_dssp EEEEEECTT------SCEECCEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred EEEEEEeCC------CcEECCeeEecCCC-CHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEEEEEEEEc
Confidence 899998753 78999999999999 99999999999999999988888877654432222 22344555443
Q ss_pred ccccCCCCCCccchhhhcccchhhhccc
Q 025031 159 NRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 159 ~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
. ..+.++ +|+.++.|++++++.+.
T Consensus 89 ~---~~~~~~-~E~~~~~W~~~~e~~~~ 112 (134)
T 3i7u_A 89 E---GEPRPS-WEVKDAKFFPIKEAKKL 112 (134)
T ss_dssp E---ECCCCC-TTSSEEEEEEHHHHHHH
T ss_pred C---CcCcCC-hhheEEEEEEHHHHhhh
Confidence 3 234444 79999999999998764
No 13
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.73 E-value=2.3e-18 Score=142.97 Aligned_cols=116 Identities=23% Similarity=0.318 Sum_probs=86.2
Q ss_pred ccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031 65 PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS 144 (259)
Q Consensus 65 ~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~ 144 (259)
.+..+|.+++++ .+| +|||++|... ..++|.|+||||++|+|| ++.+||+||++||||+.+..+..++.+.....
T Consensus 39 ~~~~~v~v~i~~-~~~--~vLL~~r~~~-~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~ 113 (182)
T 2yvp_A 39 GPVAASFVLPVT-ERG--TALLVRQYRH-PTGKFLLEVPAGKVDEGE-TPEAAARRELREEVGAEAETLIPLPSFHPQPS 113 (182)
T ss_dssp SSCEEEEEEEBC-TTS--EEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCEECSCEEECCCBCSCTT
T ss_pred ecCCEEEEEEEc-CCC--EEEEEEeccC-CCCCcEEEeccccCCCCc-CHHHHHHHHHHHHhCCCcccEEEEEEEeCCCC
Confidence 344566666665 345 8999998765 457899999999999999 99999999999999999988888877644333
Q ss_pred hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.....++.|++..... ...+..+.+|+.++.|++++++.+.
T Consensus 114 ~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~ 154 (182)
T 2yvp_A 114 FTAVVFHPFLALKARV-VTPPTLEEGELLESLELPLTEVYAL 154 (182)
T ss_dssp TBCCEEEEEEECSCEE-CSCCCCCTTCCEEEEEEEHHHHHHH
T ss_pred ccccEEEEEEEecccc-CCCCCCCCCceEEEEEEEHHHHHHH
Confidence 3334455565543221 1223457789999999999999764
No 14
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=138.08 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=80.2
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL 148 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~ 148 (259)
+|.+++++ .++ +|||++|... .++|.|+||||++|.|| ++.+||+||++||||+.+....+++.+... ...
T Consensus 22 ~v~~~i~~-~~~--~vLl~~r~~~--~~~~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~ 92 (156)
T 3gg6_A 22 VVLAVFLS-EQD--EVLLIQEAKR--ECRGSWYLPAGRMEPGE-TIVEALQREVKEEAGLHCEPETLLSVEERG---PSW 92 (156)
T ss_dssp EEEEECBC-TTS--EEEEEECCCT--TSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTE
T ss_pred EEEEEEEe-CCC--EEEEEEecCC--CCCCEEECCeeeccCCC-CHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCE
Confidence 33344444 345 8999999864 47899999999999999 999999999999999999888888876532 233
Q ss_pred eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
..+.|++.+..........+.+|+.++.|++++++.+.
T Consensus 93 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 130 (156)
T 3gg6_A 93 VRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTP 130 (156)
T ss_dssp EEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSS
T ss_pred EEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCccc
Confidence 44556665543211111234579999999999999764
No 15
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.73 E-value=7.9e-18 Score=137.33 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=70.8
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeeh------hh
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVI------EP 141 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l------~~ 141 (259)
.++.++++.. ++ +|||++|+...+.++|.|+||||++|+|| ++.+||+||++|||||.+....+++.. ..
T Consensus 28 ~~~~~~ii~~-~~--~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 103 (165)
T 3oga_A 28 RTIVCPLIQN-DG--CYLLCKMADNRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLILSDITPWTFRDDIRIK 103 (165)
T ss_dssp EEEEEEEEEE-TT--EEEEEEECC------CCEECCCEECCTTC-CHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEeC-CC--EEEEEEecCCCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeeeeeecceeeE
Confidence 3444444443 45 89999999876788999999999999999 999999999999999998776655421 01
Q ss_pred hHhhhc---ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 142 FLSKYL---LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 142 ~~~~~~---~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.+.... ..+..+++..... ...+.. .+|+.++.|++++++.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~E~~~~~W~~~~el~~~ 149 (165)
T 3oga_A 104 TYADGRQEEIYMIYLIFDCVSA-NRDICI-NDEFQDYAWVKPEELALY 149 (165)
T ss_dssp EC--CCEEEEEEEEEEEEEEES-CCCCCC-CTTEEEEEEECGGGGGGS
T ss_pred ecCCCCceeEEEEEEEEEeecc-CCCccC-CchheeeEEccHHHHhhC
Confidence 111111 1111222222211 122233 378999999999999864
No 16
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.72 E-value=3.8e-18 Score=132.70 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=76.9
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|+.. +.++|.|+||||++|+|| ++.+||+||++||||+.......++...+.++.....++.|.+.....
T Consensus 17 ~vLl~~r~~~-~~~~g~w~~PgG~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (129)
T 1mut_A 17 EIFITRRAAD-AHMANKLEFPGGKIEMGE-TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVERWEG-- 92 (129)
T ss_dssp EEEEEECSSC-CSSSCCEECCCCCSSSCS-STTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEEEECSS--
T ss_pred EEEEEEeCCC-CCCCCeEECCccCcCCCC-CHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEEEccCC--
Confidence 8999999876 478999999999999999 999999999999999999887777776554444444455566554321
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.++.+|+.++.|++++++.+.
T Consensus 93 ---~~~~~e~~~~~W~~~~el~~~ 113 (129)
T 1mut_A 93 ---EPWGKEGQPGEWMSLVGLNAD 113 (129)
T ss_dssp ---CCCCCSSCCCEEEESSSCCTT
T ss_pred ---ccCCcccceeEEeCHHHcccc
Confidence 234578899999999998763
No 17
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.72 E-value=5e-18 Score=137.29 Aligned_cols=126 Identities=17% Similarity=0.101 Sum_probs=88.8
Q ss_pred eeeeccccccccccccccccCccceeEEEEEeecC-CCceEEEEeecccccccccceeecCCCCCCCCCCCch-hhhhHH
Q 025031 44 TSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGD-NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDG-ETATRE 121 (259)
Q Consensus 44 ~~~~g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~-~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~-~aA~RE 121 (259)
+.++++.+++++. ..+..+++|++.++. ++ +|||++|... +.++|.|+||||++|.|| ++. +||+||
T Consensus 4 ~~~~Pvk~~k~~~-------~~~~~~~~vi~~~~~~~~--~vLl~~R~~~-~~~~g~w~~PgG~~e~gE-~~~~~a~~RE 72 (155)
T 1x51_A 4 GSSGPRKASRKPP-------REESSATCVLEQPGALGA--QILLVQRPNS-GLLAGLWEFPSVTWEPSE-QLQRKALLQE 72 (155)
T ss_dssp SCSCTTSSSCSCT-------TEEEEEEEEEEEECSSSE--EEEEEECCCC-STTCSCEECCEEECCSSH-HHHHHHHHHH
T ss_pred hhhCCCcCCCCCC-------CeEEEEEEEEEecCCCCC--EEEEEECCCC-CCCCceecCCccccCCCC-CHHHHHHHHH
Confidence 4556666655542 334555555444311 23 8999999875 578999999999999999 996 999999
Q ss_pred HHHhhC-CCCcceeeeeehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 122 AKEEIG-LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 122 l~EE~G-L~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
+.|||| +.+.....++.+.+.++.....++.|.+.+... . +...|..++.|++++++.+
T Consensus 73 l~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~e~~~~~W~~~~el~~ 132 (155)
T 1x51_A 73 LQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ---T--PVTTVPPGARWLTQEEFHT 132 (155)
T ss_dssp HHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC---C--CCCCCCTTEEEEEHHHHHH
T ss_pred HHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCC---C--CCCCCCCccEEccHHHhhh
Confidence 999999 888777777766555554444555666554321 1 2345778899999999875
No 18
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.72 E-value=5.7e-18 Score=133.57 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=77.9
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee----ehhhhHh
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT----VIEPFLS 144 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~----~l~~~~~ 144 (259)
+|.++++++++++.+|||++|+. .+|.|+||||++|+|| ++.+||+||++||||+.+..+.+++ ...+...
T Consensus 5 ~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 79 (138)
T 1ktg_A 5 AAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGE-DEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK 79 (138)
T ss_dssp EEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred EEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCC-CHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence 44444454334445899999873 3589999999999999 9999999999999999877766553 2222222
Q ss_pred hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.....++.|++.+... ....+++|+.++.|++++++.+.
T Consensus 80 ~~~~~~~~f~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~ 118 (138)
T 1ktg_A 80 GKPKSVKYWLAKLNNP---DDVQLSHEHQNWKWCELEDAIKI 118 (138)
T ss_dssp TEEEEEEEEEEEECSC---CCCCCCTTEEEEEEECHHHHHHH
T ss_pred CCceEEEEEEEEecCC---cccCCCchhcEeEeccHHHHHHh
Confidence 2334455666665542 22346689999999999999764
No 19
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.71 E-value=1.3e-17 Score=135.41 Aligned_cols=109 Identities=20% Similarity=0.170 Sum_probs=78.8
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL-- 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-- 143 (259)
++.+|.+++++ ++ +|||++|.. +|.|+||||++|+|| |+.+||+||++|||||.+..+..++.+....
T Consensus 5 ~~~~v~~vi~~--~~--~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 74 (159)
T 3f6a_A 5 RHFTVSVFIVC--KD--KVLLHLHKK-----AKKMLPLGGHIEVNE-LPEEACIREAKEEAGLNVTLYNPIDINLKKSCD 74 (159)
T ss_dssp SCEEEEEEEEE--TT--EEEEEECSS-----SCCEECEEEECCTTC-CHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHH
T ss_pred ceEEEEEEEEE--CC--EEEEEEcCC-----CCeEECCccCccCCC-CHHHHHHHHHHHHhCCCceeccccccccccccc
Confidence 55666666666 34 899999875 489999999999999 9999999999999999998887776543221
Q ss_pred hhh------------------c-ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 144 SKY------------------L-LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 144 ~~~------------------~-~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
... . .....|++.... ..+.++.+|+.++.|++++++.+..
T Consensus 75 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~~ 134 (159)
T 3f6a_A 75 LSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTS---FETSPEIGESKILKWYSKEDLKNAH 134 (159)
T ss_dssp HTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSC---SCCCCCTTSCCCEEEECSSSSTTCS
T ss_pred ccccccccCccccccccCCCCceEEEEEEEEEeCC---CCcCCCCCcccceEEeeHHHHhhCc
Confidence 000 0 111234444332 2344567899999999999998754
No 20
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.71 E-value=1.1e-17 Score=138.94 Aligned_cols=146 Identities=19% Similarity=0.120 Sum_probs=93.8
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
+++++++++.. ++ +|||++|... .++|.|+||||++|+|| ++.+||+||++|||||.+..+..++.+......
T Consensus 24 ~~~~~~~vi~~--~~--~vLL~~r~~~--~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 96 (176)
T 3q93_A 24 SRLYTLVLVLQ--PQ--RVLLGMKKRG--FGAGRWNGFGGKVQEGE-TIEDGARRELQEESGLTVDALHKVGQIVFEFVG 96 (176)
T ss_dssp EEEEEEEEEEC--SS--EEEEEEECSS--TTTTSEECEEEECCTTS-CHHHHHHHHHHHHHSCEESCCEEEEEEEEEETT
T ss_pred CcEEEEEEEEe--CC--EEEEEEEcCC--CCCCeEECceecCCCCC-CHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCC
Confidence 44455444433 34 8999998654 57899999999999999 999999999999999999888888887544333
Q ss_pred hcc--eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHH----HHhhcccceeeeeeeeeccCceEEeee
Q 025031 146 YLL--RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVE----EKEWMGEKYLLHYFNYEQKNKKYLIWG 219 (259)
Q Consensus 146 ~~~--~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~----~~~~~g~~~~~~~f~~~~~~~~~~IWG 219 (259)
... .++.|++.... .. +.+.|..++.|++++++.+....... ..-..+..+ ...|.|. ++..||+
T Consensus 97 ~~~~~~~~~f~~~~~~---~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---~~~~~~~ 167 (176)
T 3q93_A 97 EPELMDVHVFCTDSIQ---GT--PVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKF-HGYFKFQ---GQDTILD 167 (176)
T ss_dssp CSCEEEEEEEEESCEE---SC--CCCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHTTCCE-EEEEEEE---TTTEEEE
T ss_pred CCcEEEEEEEEEECCC---CC--cCCCcceeeEEeeHHHccccccCcchHHHHHHHHcCCcE-EEEEEEc---CCCchhh
Confidence 222 23444443222 12 23456777899999999864322211 111223322 2334454 2347888
Q ss_pred hhHhhhhh
Q 025031 220 ITAAILVR 227 (259)
Q Consensus 220 lTa~il~~ 227 (259)
.+.+.|..
T Consensus 168 ~~~~~~~~ 175 (176)
T 3q93_A 168 YTLREVDT 175 (176)
T ss_dssp EEEEECSC
T ss_pred hhhhhhcc
Confidence 87766543
No 21
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.70 E-value=7.6e-18 Score=141.09 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=83.9
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcce-eeeeehhhhH
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLV-DVVTVIEPFL 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i-~~l~~l~~~~ 143 (259)
.+.+|.+++++ .+| +|||++|+.....++|.|+| |||++|+|| |+.+||+||++||||+.+..+ .+++.+....
T Consensus 31 ~~~~v~~~i~~-~~g--~vLl~~R~~~~~~~~g~w~~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 106 (190)
T 1hzt_A 31 LHLAFSSWLFN-AKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLGE-SNEDAVIRRCRYELGVEITPPESIYPDFRYRA 106 (190)
T ss_dssp CEECEEEEEEC-TTC--CEEEEEECTTCSSSTTCEEESEEECCCTTC-CHHHHHHHHHHHHHCCCBSCCEEEETTCEEEE
T ss_pred eEEEEEEEEEc-CCC--EEEEEEeCCCCCCCCCcccCcccccCCCCC-CHHHHHHHHHHHHHCCCchhhheeeeeEEEEe
Confidence 34466666665 345 89999998776678999999 999999999 999999999999999999887 6666654321
Q ss_pred --h-h--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 144 --S-K--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 --~-~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
. . ....++.|++.+.. .+.++++|+.++.|++++++.+.
T Consensus 107 ~~~~~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~~ 150 (190)
T 1hzt_A 107 TDPSGIVENEVCPVFAARTTS----ALQINDDEVMDYQWCDLADVLHG 150 (190)
T ss_dssp ECTTSCEEEEECCEEEEEBCS----CCCCCTTTEEEEEEECHHHHHHH
T ss_pred eCCCCCcceEEEEEEEEecCC----CCcCCccceeeEEEecHHHHHHH
Confidence 1 1 12223445554332 34557789999999999999764
No 22
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.70 E-value=1e-17 Score=135.35 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=80.6
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC--cceeeeeehhhhHhh
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP--SLVDVVTVIEPFLSK 145 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~--~~i~~l~~l~~~~~~ 145 (259)
.+|.+++++ .++ +|||++|+.. .++|.|+||||++|+|| ++.+||+||++||||+.+ ..+..++.+.+.+..
T Consensus 19 ~~v~~vi~~-~~~--~vLl~~r~~~--~~~g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 92 (160)
T 1rya_A 19 VSLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD 92 (160)
T ss_dssp EEEEEEEEC-TTS--CEEEEEECSS--SSTTSEECCEEECCTTC-CHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESS
T ss_pred EEEEEEEEc-CCC--EEEEEeccCC--CCCCEEECCccccCCCC-CHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcc
Confidence 455555665 345 8999999874 46899999999999999 999999999999999985 356677766543322
Q ss_pred h--------cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 146 Y--------LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 146 ~--------~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
. ...++.|.+.+.. ..+..+.+|+.++.|++++++.+..
T Consensus 93 ~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~e~~~~~W~~~~el~~~~ 139 (160)
T 1rya_A 93 NFSGTDFTTHYVVLGFRFRVSE---EELLLPDEQHDDYRWLTSDALLASD 139 (160)
T ss_dssp BTTBSSSCEEEEEEEEEEECCG---GGCCCCSSSEEEEEEECHHHHHHCT
T ss_pred cccCCCcCcEEEEEEEEEEcCc---cccccCCCccceEEEecHHHHhhcc
Confidence 1 2334445454432 2334567899999999999998643
No 23
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.70 E-value=1.2e-17 Score=141.60 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=85.5
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
+..||.|+++++ + +|||++|... ..++|.|+||||++|+|| ++++||+||++||||+.+..+..++.+......
T Consensus 48 ~~~av~vl~~~~--~--~vLLvrq~r~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~ 121 (198)
T 1vhz_A 48 NREAVMIVPIVD--D--HLILIREYAV-GTESYELGFSKGLIDPGE-SVYEAANRELKEEVGFGANDLTFLKKLSMAPSY 121 (198)
T ss_dssp CCCEEEEEEEET--T--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTT
T ss_pred CCCEEEEEEEEC--C--EEEEEEcccC-CCCCcEEEeCcccCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCc
Confidence 345666666653 2 8999987654 456889999999999999 999999999999999999888888876543333
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....++.|++...... ....+++|+.++.|+|++++.+.
T Consensus 122 ~~~~~~~f~a~~~~~~--~~~~~~~E~~~~~w~~~~el~~~ 160 (198)
T 1vhz_A 122 FSSKMNIVVAQDLYPE--SLEGDEPEPLPQVRWPLAHMMDL 160 (198)
T ss_dssp CCCEEEEEEEEEEEEC--CCCCCCSSCCCEEEEEGGGGGGG
T ss_pred cCcEEEEEEEEeCCcc--cCCCCCCceEEEEEEEHHHHHHH
Confidence 3445666766644321 23456789999999999999864
No 24
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.70 E-value=1.1e-17 Score=137.57 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=77.2
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY 146 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~ 146 (259)
+.+|.+++++ +| +|||++|... ..++|.|+||||++|+|| |+.+||+||++||||+ +..+..++.+.......
T Consensus 34 ~~~v~vii~~--~~--~vLL~~~~r~-~~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~ 106 (170)
T 1v8y_A 34 KPAVAVIALR--EG--RMLFVRQMRP-AVGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFT 106 (170)
T ss_dssp CCEEEEEEEE--TT--EEEEEECCBT-TTTBCCBBCSEEECCTTC-CHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTB
T ss_pred CCeEEEEEEE--CC--EEEEEEEEeC-CCCCCEEECCccccCCCC-CHHHHHHHHHHHHHCC-CcCceeeEEEecCCCcc
Confidence 3466666666 45 8999988755 257899999999999999 9999999999999999 88888887754333333
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
...++.|++..... ....++++|+.++.|+|++++.+.
T Consensus 107 ~~~~~~f~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~ 144 (170)
T 1v8y_A 107 DEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALER 144 (170)
T ss_dssp CCEEEEEEEEEEEE--CC--------CEEEEECHHHHHHH
T ss_pred ccEEEEEEEEeccc--cCCCCCCCceEEEEEEEHHHHHHH
Confidence 34455666654332 223456789999999999998763
No 25
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.70 E-value=5.8e-18 Score=136.93 Aligned_cols=109 Identities=20% Similarity=0.116 Sum_probs=71.7
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh---
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF--- 142 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~--- 142 (259)
.+.+|.+++++ .++ +|||++|+ +|.|+||||++|+|| ++.+||+||++|||||.+....+++.+...
T Consensus 20 ~~~~v~~ii~~-~~~--~vLL~~r~------~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 89 (153)
T 3eds_A 20 FXPSVAAVIKN-EQG--EILFQYPG------GEYWSLPAGAIELGE-TPEEAVVREVWEETGLKVQVKKQKGVFGGKEYR 89 (153)
T ss_dssp EEEEEEEEEBC-TTC--CEEEECC---------CBBCSEEECCTTS-CHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGE
T ss_pred EeeeEEEEEEc-CCC--eEEEEEcC------CCcEECCccccCCCC-CHHHHHHHHHHHHHCccceeeeEEEEeccccee
Confidence 34455555555 345 79999987 589999999999999 999999999999999999888888765311
Q ss_pred --Hhhh---cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 143 --LSKY---LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 143 --~~~~---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
+... ...++.|.+.+.. ..+.++.+|+.++.|++++++.+..
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~E~~~~~W~~~~el~~l~ 136 (153)
T 3eds_A 90 YTYSNGDEVEYIVVVFECEVTS---GELRSIDGESLKLQYFSLSEKPPLA 136 (153)
T ss_dssp EECTTSCEEEEEEEEEEEEEEE---ECCC-------CEEEECGGGCCCBS
T ss_pred eecCCCCeEEEEEEEEEEEecC---CccccCCCcEEEEEEECHHHCchhc
Confidence 1111 1134455555443 2344567899999999999998754
No 26
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.70 E-value=1.6e-17 Score=134.63 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=78.0
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceee--eeehhhhHhhh
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDV--VTVIEPFLSKY 146 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~--l~~l~~~~~~~ 146 (259)
++.+++++ .++ +|||++|... +.++|.|+||||++|+|| ++.+||+||+.||||+.+....+ ++...+..+..
T Consensus 31 ~~~~~i~~-~~~--~vLL~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 105 (158)
T 3hhj_A 31 VVACALLD-QDN--RVLLTQRPEG-KSLAGLWEFPGGKVEQGE-TPEASLIRELEEELGVHVQADNLFPLTFASHGYETF 105 (158)
T ss_dssp EEEEEEBC-TTS--EEEEEECCCT-TSCCCCCBCCEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSC
T ss_pred EEEEEEEe-CCC--EEEEEEeCCC-CCCCCEEECCceeecCCC-CHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCc
Confidence 33334444 345 8999999866 568999999999999999 99999999999999998877654 44433333333
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
...++.|++.+... .++..|+.++.|++++++.+.
T Consensus 106 ~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~ 140 (158)
T 3hhj_A 106 HLLMPLYFCSHYKG-----VAQGREGQNLKWIFINDLDKY 140 (158)
T ss_dssp EEEEEEEEESCCBS-----CCCCTTSCEEEEEEGGGGGGS
T ss_pred EEEEEEEEEEECCC-----ccCCccccceEEEcHHHHhhC
Confidence 44444454443321 345678999999999999763
No 27
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.70 E-value=2e-17 Score=131.41 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=77.7
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeee--eehhhhHhhh
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVV--TVIEPFLSKY 146 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l--~~l~~~~~~~ 146 (259)
++.+++++ .+| +|||++|... +.++|.|+||||++|.|| ++.+||+||++||||+.+....+. +...+..+..
T Consensus 10 ~~~~vi~~-~~~--~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 84 (144)
T 3r03_A 10 VTAAALID-PDG--RVLLAQRPPG-KSLAGLWEFPGGKLEPGE-TPEAALVRELAEELGVDTRASCLAPLAFASHSYDTF 84 (144)
T ss_dssp EEEEEEBC-TTS--CEEEEECCTT-SSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSS
T ss_pred EEEEEEEc-CCC--EEEEEEeCCC-CCCCCcEECCCcEecCCC-CHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCe
Confidence 33334444 345 7999999876 468999999999999999 999999999999999988776433 3233333333
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
...++.|.+.+... .++.+|+.++.|++++++.+..
T Consensus 85 ~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~ 120 (144)
T 3r03_A 85 HLLMPLYACRSWRG-----RATAREGQTLAWVRAERLREYP 120 (144)
T ss_dssp EEEEEEEEECCCBS-----CCCCCSSCEEEEECGGGGGGSC
T ss_pred EEEEEEEEEEecCC-----ccCCCCcceEEEEeHHHhccCC
Confidence 34445555543321 2446788999999999997643
No 28
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.70 E-value=2.2e-17 Score=135.50 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=81.0
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceee-cCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehhhhH
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVS-LPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIEPFL 143 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~ws-fPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~~~~ 143 (259)
+.+|.+++++ .+| +|||++|+.....++|.|+ ||||++|+|| ++.+||+||++||||+.+... ..++.+..+.
T Consensus 34 ~~~v~v~i~~-~~~--~vLl~~r~~~~~~~~g~w~~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~ 109 (171)
T 1q27_A 34 VRVVNAFLRN-SQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELNVEIDALSWRPLASFSPFQ 109 (171)
T ss_dssp CEEEEEEEEE-TTT--EEEECCSCCSSSCCCCSCCCSEEEECSSSS-CHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSS
T ss_pred ceEEEEEEEC-CCC--eEEEEEecCCCCCCCCccccccCccccCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeccC
Confidence 4566666665 345 8999999877667899998 9999999999 999999999999999988773 4455543111
Q ss_pred hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
......++.|++... ..+.++++|+.++.|++++++.+
T Consensus 110 ~~~~~~~~~f~~~~~----~~~~~~~~E~~~~~W~~~~el~~ 147 (171)
T 1q27_A 110 TTLSSFMCVYELRSD----ATPIFNPNDISGGEWLTPEHLLA 147 (171)
T ss_dssp SCCSSEEEEEEEECC----CCCCSCTTTCSCCEEECHHHHHH
T ss_pred CCCccEEEEEEEEEC----CccccCchhhheEEEecHHHHHH
Confidence 111124445555441 23355678999999999999974
No 29
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.70 E-value=1.2e-17 Score=131.78 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=75.7
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|+.. +.++|.|+||||++|.|| ++.+||+||+.||||+.+.....++...+..+.....++.|.+.+...
T Consensus 21 ~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (140)
T 2rrk_A 21 KILLAQRPAQ-SDQAGLWEFAGGKVEPDE-SQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHG-- 96 (140)
T ss_dssp EEEEEECCSS-CSCCCCEECCEEECCTTS-CHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEEEESEEEE--
T ss_pred EEEEEEcCCC-CCCCCEEECCceecCCCC-CHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEEEEEeeCC--
Confidence 8999999866 467899999999999999 999999999999999998877777776544444444455555544321
Q ss_pred CCCCCCccchhhhcccchhhhccc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.++.+|+.++.|++++++.+.
T Consensus 97 ---~~~~~e~~~~~W~~~~el~~~ 117 (140)
T 2rrk_A 97 ---TLQAHEHQALVWCSPEEALQY 117 (140)
T ss_dssp ---CCCCSSCSCEEEECHHHHTTS
T ss_pred ---CcCCCccceeEEeCHHHHhhC
Confidence 134568889999999998764
No 30
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.69 E-value=3.1e-17 Score=140.17 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=81.1
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL 147 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~ 147 (259)
+++++++..+.++..+|||+++... ...++.|+||||++|+|| ++++||+||++||||+.+..+.+++.+........
T Consensus 63 av~v~~v~~~~~~~~~vlLv~q~R~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 140 (212)
T 2dsc_A 63 GVAVIPVLQRTLHYECIVLVKQFRP-PMGGYCIEFPAGLIDDGE-TPEAAALRELEEETGYKGDIAECSPAVCMDPGLSN 140 (212)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBC
T ss_pred EEEEEEEEeCCCCCcEEEEEEeecC-CCCCcEEECCccccCCCC-CHHHHHHHHHHHHhCCCccceEEeccEEcCCCccC
Confidence 4444455543322337888876443 235679999999999999 99999999999999999887777665432222233
Q ss_pred ceeeeEeeEeecccc----CCCCCCccchhhhcccchhhhccc
Q 025031 148 LRVVPVIGILHNRKA----FKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 148 ~~v~~~v~~~~~~~~----~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
..++.|++.+..... ....++++|+.++.|+|++++.+.
T Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 183 (212)
T 2dsc_A 141 CTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQR 183 (212)
T ss_dssp CEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred ceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence 446667666543211 133567789999999999999764
No 31
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.69 E-value=1.7e-17 Score=128.80 Aligned_cols=104 Identities=18% Similarity=0.068 Sum_probs=77.3
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL 148 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~ 148 (259)
+|.+++++ .++ +|||++|+. |.|+||||++|.|| ++.+||+||++||||+.+.....++.+.+.......
T Consensus 4 ~~~~vi~~-~~~--~vLl~~r~~------g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 73 (126)
T 1vcd_A 4 GAGGVVFN-AKR--EVLLLRDRM------GFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVE 73 (126)
T ss_dssp EEEEEEEC-TTS--CEEEEECTT------SCEECCEECCCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCE
T ss_pred EEEEEEEc-CCC--EEEEEEECC------CCccCCcCcCCCCC-CHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceE
Confidence 44455555 345 899999874 78999999999999 999999999999999999888888776543333333
Q ss_pred eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.++.|++..... . ..+.+|+.++.|++++++.+.
T Consensus 74 ~~~~~~~~~~~~---~-~~~~~e~~~~~w~~~~el~~~ 107 (126)
T 1vcd_A 74 REVHWFLMRGEG---A-PRLEEGMTGAGWFSPEEARAL 107 (126)
T ss_dssp EEEEEEEEEEES---C-CCCCTTCCEEEEECHHHHHHH
T ss_pred EEEEEEEEEcCC---C-CCCCcceeeeEEcCHHHHHHh
Confidence 455565554432 1 234578999999999998763
No 32
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.69 E-value=1.8e-17 Score=139.63 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=82.1
Q ss_pred cceeEEEEEeecCCCceEEEEeeccccc----cc-ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRL----ST-HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE 140 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~----~~-~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~ 140 (259)
+..+|.|++++.+++ +|||+++.... +. +++.|+||||++| || ++.+||+||++||||+.+..+..++.+.
T Consensus 44 ~~~av~v~~~~~~~~--~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE-~~~~aa~REl~EEtG~~~~~~~~l~~~~ 119 (191)
T 3o6z_A 44 RGNGATILLYNTKKK--TVVLIRQFRVATWVNGNESGQLIESCAGLLD-ND-EPEVCIRKEAIEETGYEVGEVRKLFELY 119 (191)
T ss_dssp CCCEEEEEEEETTTT--EEEEEEEECHHHHTTTCTTCEEEECEEEECC-SS-CHHHHHHHHHHHHC-CCCSCEEEEEEEE
T ss_pred cCCEEEEEEEECCCC--EEEEEEcCCccccccCCCCCeEEEecceEeC-CC-CHHHHHHHHHHHHhCCccCcEEEEEEEE
Confidence 445666666654345 88888765431 11 6789999999999 99 9999999999999999998888888765
Q ss_pred hhHhhhcceeeeEeeEeeccccCC--CCCCccchhhhcccchhhhccc
Q 025031 141 PFLSKYLLRVVPVIGILHNRKAFK--PTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 141 ~~~~~~~~~v~~~v~~~~~~~~~~--~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.........++.|++......... ..+ ++|+.++.|+|++++.+.
T Consensus 120 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~ 166 (191)
T 3o6z_A 120 MSPGGVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEM 166 (191)
T ss_dssp SCTTTBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHH
T ss_pred eCCCccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHH
Confidence 444444556777877765321110 122 689999999999999764
No 33
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.69 E-value=8.1e-18 Score=140.69 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=75.1
Q ss_pred ceEEEEeeccc-----ccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-hc-ceeeeE
Q 025031 81 ELRVILTKRAS-----RLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-YL-LRVVPV 153 (259)
Q Consensus 81 ~~~vLL~kRs~-----~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-~~-~~v~~~ 153 (259)
+.+|||++|+. ....++|.|+||||++|+|| ++.+||+||++|||||.+..+..++.+...... .+ .....|
T Consensus 45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 123 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENE-SAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAF 123 (187)
T ss_dssp EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEE
T ss_pred CCEEEEEEEccccccccCCCCCCEEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCCCCEEEEEE
Confidence 45999999975 33478899999999999999 999999999999999999888888876543221 11 222334
Q ss_pred eeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 154 IGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 154 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
++.+..... ....+.+|+.++.|++++++.+
T Consensus 124 ~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~ 154 (187)
T 3i9x_A 124 YAIVPPEAL-EKRAAGDDAAEIGLFPMTEALE 154 (187)
T ss_dssp EEECCHHHH-HHHHHSTTTTTEEEEEHHHHTT
T ss_pred EEEEcCccc-CCcCCCCceeEEEEEeHHHccc
Confidence 444332111 1112457899999999999975
No 34
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.69 E-value=1.6e-17 Score=133.29 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=79.3
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK- 145 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~- 145 (259)
+++|.+++.. ++ +|||++|.... . +|.|+||||++|+|| ++.+||+||++||||+.+....+++........
T Consensus 8 ~~~v~~ii~~--~~--~vLl~~r~~~~-~-~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 80 (153)
T 2b0v_A 8 NVTVAAVIEQ--DD--KYLLVEEIPRG-T-AIKLNQPAGHLEPGE-SIIQACSREVLEETGHSFLPEVLTGIYHWTCASN 80 (153)
T ss_dssp EEEEEEECEE--TT--EEEEEEECSSS-S-CCEEECSEEECCTTS-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred CEEEEEEEee--CC--EEEEEEEcCCC-C-CCeEECCCcCcCCCC-CHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCC
Confidence 3444444443 34 89999998752 3 789999999999999 999999999999999998888887776432221
Q ss_pred -hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 -YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....++.|++.+.... ....+.+|+.++.|++++++.+.
T Consensus 81 ~~~~~~~~f~~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~ 120 (153)
T 2b0v_A 81 GTTYLRFTFSGQVVSFD--PDRKLDTGIVRAAWFSIDEIRAK 120 (153)
T ss_dssp TEEEEEEEEEEEEEEEC--TTSCCCTTEEEEEEEEHHHHHHT
T ss_pred CcEEEEEEEEEEeCCCC--CCCCCCCCeeeEEEecHHHHhhh
Confidence 1223344555544321 11345678999999999999873
No 35
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.69 E-value=4.1e-17 Score=132.20 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH----hhhcceeeeEe
Q 025031 79 NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL----SKYLLRVVPVI 154 (259)
Q Consensus 79 ~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~----~~~~~~v~~~v 154 (259)
++..++||++|+.. +|.|+||||++|+|| |+.+||+||++||||+.......++.+.... ......+..|+
T Consensus 21 n~~~e~LL~~r~~~----~~~W~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (155)
T 3u53_A 21 NNAIEFLLLQASDG----IHHWTPPKGHVEPGE-DDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWL 95 (155)
T ss_dssp SCSEEEEEEEESSS----SCCEECSEEECCSSC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEEEecCC----CCCEECCeeeccCCC-CHHHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcceeEEEEEE
Confidence 45679999999864 478999999999999 9999999999999999998877766543221 11122334444
Q ss_pred eEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 155 GILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 155 ~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
+.+... ...+.+ .+|+.++.|++++++.+.
T Consensus 96 ~~~~~~-~~~~~~-~~E~~~~~W~~~~ea~~~ 125 (155)
T 3u53_A 96 AEVKDY-DVEIRL-SHEHQAYRWLGLEEACQL 125 (155)
T ss_dssp EEESCT-TCCCCC-CTTEEEEEEECHHHHHHH
T ss_pred EEEecc-CCccCC-CcceeEEEEeEHHHHHHH
Confidence 544432 222333 369999999999998653
No 36
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.69 E-value=3.1e-17 Score=132.16 Aligned_cols=111 Identities=18% Similarity=0.099 Sum_probs=76.0
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-h
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-K 145 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~ 145 (259)
+.+|.+++++++.+.+.|||++|+.. .++| |+||||++|+|| ++.+||+||+.||||+.+....+++....... .
T Consensus 8 ~~~~~~ii~~~~~~~~~vLl~~r~~~--~~~g-w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 83 (155)
T 2b06_A 8 ILTNICLIEDLETQRVVMQYRAPENN--RWSG-YAFPGGHVENDE-AFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG 83 (155)
T ss_dssp EEEEEEEEEETTTTEEEEEEEC-------CCE-EECCCCBCCTTS-CHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred EEEEEEEEEECCCCeEEEEEEECCCC--CCCC-EeccceecCCCC-CHHHHHHHHHHHHhCccccCCcEEEEEeeccCCC
Confidence 34555555554434456999999876 3788 999999999999 99999999999999999888887776554332 1
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....++.|.+.... . .+...|+.++.|++++++.+.
T Consensus 84 ~~~~~~~~~~~~~~---~--~~~~~e~~~~~W~~~~el~~~ 119 (155)
T 2b06_A 84 GRYIVICYKATEFS---G--TLQSSEEGEVSWVQKDQIPNL 119 (155)
T ss_dssp CEEEEEEEEECEEE---E--CCCCBTTBEEEEEEGGGGGGS
T ss_pred ceEEEEEEEEEecC---C--CCCCCcceeeEEeeHHHhhhC
Confidence 22334444443322 1 233478899999999999874
No 37
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.68 E-value=4.3e-17 Score=133.67 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=76.5
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
.+.+|.+++++ +| +|||++|... +|.|+||||++|+|| ++.+||+||++|||||.+....+++........
T Consensus 22 ~~~~v~~ii~~--~~--~vLL~~r~~~----~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 92 (171)
T 3id9_A 22 MQVRVTGILIE--DE--KVLLVKQKVA----NRDWSLPGGRVENGE-TLEEAMIREMREETGLEVKIKKLLYVCDKPDAS 92 (171)
T ss_dssp CEEEEEEEEEE--TT--EEEEEECSST----TCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSS
T ss_pred eEEEEEEEEEE--CC--EEEEEEEECC----CCeEECCCccCCCCC-CHHHHHHHHHHHHHCCccccceEEEEEcccCCC
Confidence 34455555555 34 8999999863 689999999999999 999999999999999999877777776543333
Q ss_pred hcceeeeEeeEeeccccC--CCCCCccchhhhcccchhhhccc
Q 025031 146 YLLRVVPVIGILHNRKAF--KPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~--~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.......|++........ ...++.+|+.++.|+|++++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 135 (171)
T 3id9_A 93 PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYY 135 (171)
T ss_dssp SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGG
T ss_pred CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC
Confidence 232333344433221110 11236689999999999999864
No 38
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.68 E-value=2e-17 Score=129.58 Aligned_cols=103 Identities=28% Similarity=0.349 Sum_probs=76.5
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh---
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--- 145 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--- 145 (259)
+|.+++++ ++ +|||++|.. |.|+||||++|.|| |+.+||+||++||||+.+.....++.+......
T Consensus 6 ~~~~vi~~--~~--~vLl~~r~~------~~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 74 (134)
T 2pbt_A 6 SAGGVLFK--DG--EVLLIKTPS------NVWSFPKGNIEPGE-KPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGE 74 (134)
T ss_dssp EEEEEEEE--TT--EEEEEECTT------SCEECCEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTE
T ss_pred EEEEEEEE--CC--EEEEEEeCC------CcEECCccccCCCC-CHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCc
Confidence 44444555 34 899999875 89999999999999 999999999999999999888888876544432
Q ss_pred -hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 -YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....++.|++..... .+.++ +|+.++.|++++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~---~~~~~-~e~~~~~W~~~~el~~~ 112 (134)
T 2pbt_A 75 RIFKTVKYYLMKYKEG---EPRPS-WEVKDAKFFPIKEAKKL 112 (134)
T ss_dssp EEEEEEEEEEEEEEEE---CCCCC-TTSSEEEEEEHHHHHHH
T ss_pred EEEEEEEEEEEEecCC---CcCCC-cceeEEEEEcHHHHHhh
Confidence 223345555554432 22334 39999999999999863
No 39
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.67 E-value=2.5e-17 Score=140.28 Aligned_cols=116 Identities=18% Similarity=0.138 Sum_probs=77.6
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCC-CCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAE-EGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS 144 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve-~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~ 144 (259)
+..+|.|++++ .++ +|||++|... ..++|.|+||||++| .|| ++.+||+||++|||||.+..+..++.+.....
T Consensus 42 ~~~av~v~i~~-~~~--~vLLvrr~r~-~~~~~~w~lPgG~ve~~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~ 116 (207)
T 1mk1_A 42 HFGAVAIVAMD-DNG--NIPMVYQYRH-TYGRRLWELPAGLLDVAGE-PPHLTAARELREEVGLQASTWQVLVDLDTAPG 116 (207)
T ss_dssp ECCEEEEEECC-TTS--EEEEEEEEET-TTTEEEEECCEEECCSTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTT
T ss_pred CCCEEEEEEEc-CCC--EEEEEEeecC-CCCCcEEEeCCccccCCCC-CHHHHHHHHHHHHHCCcccccEEEEEEEcCCC
Confidence 34566666665 345 8999988765 356899999999999 999 99999999999999999988887776532222
Q ss_pred hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.....++.|++............+.+|+.++.|++++++.+.
T Consensus 117 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 158 (207)
T 1mk1_A 117 FSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR 158 (207)
T ss_dssp TBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred ccccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHH
Confidence 222245666665433211111246789999999999999764
No 40
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.67 E-value=6.2e-17 Score=138.32 Aligned_cols=118 Identities=19% Similarity=0.114 Sum_probs=80.5
Q ss_pred cceeEEEEEeecCCCceEEEEeeccccccc----ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLST----HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEP 141 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~----~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~ 141 (259)
+..||.|++++.+++ +|||+++.+.... .++.|+||||++|+|| ++++||+||++||||+.+..+..++.+..
T Consensus 56 ~~~av~vl~~~~~~~--~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE-~~~~aA~REl~EEtGl~~~~~~~l~~~~~ 132 (209)
T 1g0s_A 56 RGHAAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPVLSFLA 132 (209)
T ss_dssp CCCEEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEECEEEECCTTC-CHHHHHHHHHHHHHCCCCCCEEEEEEEES
T ss_pred CCCEEEEEEEECCCC--EEEEEEeecccCCCCCCCCeEEEeCcccCCCCc-CHHHHHHHHHHHHcCcccCcEEEeEEEec
Confidence 445677766663345 8888765432111 2578999999999999 99999999999999999988888887643
Q ss_pred hHhhhcceeeeEeeEeeccc-cC-CCCCCccchhhhcccchhhhccc
Q 025031 142 FLSKYLLRVVPVIGILHNRK-AF-KPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 142 ~~~~~~~~v~~~v~~~~~~~-~~-~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
........++.|++.+.... .. ....+++|+.++.|+|++++.+.
T Consensus 133 ~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~ 179 (209)
T 1g0s_A 133 SPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 179 (209)
T ss_dssp CTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred CCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence 33333345677777653211 11 12356788999999999998763
No 41
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=141.13 Aligned_cols=118 Identities=23% Similarity=0.146 Sum_probs=80.4
Q ss_pred cceeEEEEEeecCCCceEEEEeeccccc------------------------------ccccceeecCCCCCCC-CCCCc
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRL------------------------------STHSGEVSLPGGKAEE-GDEDD 114 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~------------------------------~~~~G~wsfPGG~ve~-gE~s~ 114 (259)
+..+|.|++++..++ +|||+++.+.. ..+++.|+||||++|+ || ++
T Consensus 35 ~~~aV~vl~~~~~~~--~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gE-s~ 111 (218)
T 3q91_A 35 THDSVTVLLFNSSRR--SLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGL-SL 111 (218)
T ss_dssp CCCEEEEEEEEGGGT--EEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSC-CH
T ss_pred cCCeEEEEEEECCCC--EEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCC-CH
Confidence 456777777774444 78887754321 0126899999999999 99 99
Q ss_pred hhhhhHHHHHhhCCCC--cceeeeeehhhhHhhhcceeeeEeeEeeccc---cCCCCCCccchhhhcccchhhhccc
Q 025031 115 GETATREAKEEIGLDP--SLVDVVTVIEPFLSKYLLRVVPVIGILHNRK---AFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 115 ~~aA~REl~EE~GL~~--~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~---~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
++||+||++||||+.+ ..+..++.+..........++.|++.+.... .....++++|+.++.|+|++++.+.
T Consensus 112 ~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~ 188 (218)
T 3q91_A 112 EEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAF 188 (218)
T ss_dssp HHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHH
T ss_pred HHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence 9999999999999998 7777777754433344556777887765321 1123567789999999999999764
No 42
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.67 E-value=8.7e-17 Score=128.82 Aligned_cols=110 Identities=23% Similarity=0.214 Sum_probs=72.9
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eee--eehhhh-H
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVV--TVIEPF-L 143 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l--~~l~~~-~ 143 (259)
+|.|+++...+++.+|||++|... |.|+||||++|+|| ++.+||+||++|||||.+... .+. .....+ +
T Consensus 7 ~v~vvi~~~~~~~~~vLl~~r~~~-----g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (149)
T 3son_A 7 QVLVIPFIKTEANYQFGVLHRTDA-----DVWQFVAGGGEDEE-AISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF 80 (149)
T ss_dssp EEEEEEEEECSSSEEEEEEEESSS-----SCEECEEEECCTTC-CHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred EEEEEEEEecCCCeEEEEEEEcCC-----CCEeCCccccCCCC-CHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence 444444432233449999999864 89999999999999 999999999999999988753 111 111111 1
Q ss_pred h-h--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 144 S-K--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 ~-~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
. . .....+.|.+.+... ...+.+ ++|+.++.|++++++.+.
T Consensus 81 ~~~~~~~~~~~~f~~~~~~~-~~~~~~-~~E~~~~~W~~~~el~~~ 124 (149)
T 3son_A 81 SFNKPYVVPEYCFAIDLTSC-SYQVTL-SLEHSELRWVSYESAIQL 124 (149)
T ss_dssp CSSSCSEEEEEEEEEECTTT-GGGCCC-CTTEEEEEEECHHHHHHH
T ss_pred ccCCceEeEEEEEEEEcCCC-CCcccC-CCceeeEEEeCHHHHHHH
Confidence 1 1 222344555554421 123344 489999999999998764
No 43
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.66 E-value=7.9e-17 Score=139.45 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=81.6
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK- 145 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~- 145 (259)
..+|.++++...+++.+|||++|... +++|.|+||||++|+|| |+.+||+||++||||+....++.++.+......
T Consensus 13 ~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lPGG~ve~gE-s~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r~~ 89 (226)
T 2fb1_A 13 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDE-SVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDP 89 (226)
T ss_dssp EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTS-CHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSS
T ss_pred eEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECCeeccCCCC-CHHHHHHHHHHHHHCCCCCceEEEEEeCCCCcCC
Confidence 34555545532234459999999874 67899999999999999 999999999999999999888888876533211
Q ss_pred hcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 YLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 ~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
... ....|++.+... ....+.+|+.++.|++++++.+.
T Consensus 90 ~~~~v~~~y~a~~~~~---~~~~~~~e~~~~~W~~~~el~~l 128 (226)
T 2fb1_A 90 GERVVSIAYYALININ---EYDRELVQKHNAYWVNINELPAL 128 (226)
T ss_dssp SSCEEEEEEEEECCTT---SSCHHHHHHTTEEEEETTSCCCB
T ss_pred CceEEEEEEEEEecCc---ccccCCccccceEEEEHHHhhhc
Confidence 122 222455554432 11234579999999999999753
No 44
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.66 E-value=7.1e-17 Score=128.56 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=74.1
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh-Hhh
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF-LSK 145 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~-~~~ 145 (259)
+.+|.++++++.++ +|||++|. +|.|+||||++|+|| ++.+||+||+.||||+.+.....++.+..+ +..
T Consensus 18 ~~~~~~vi~~~~~~--~vLl~~r~------~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 88 (148)
T 2azw_A 18 RYAAYIIVSKPENN--TMVLVQAP------NGAYFLPGGEIEGTE-TKEEAIHREVLEELGISVEIGCYLGEADEYFYSN 88 (148)
T ss_dssp CCEEEEECEEGGGT--EEEEEECT------TSCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEET
T ss_pred eeEEEEEEECCCCC--eEEEEEcC------CCCEeCCCcccCCCC-CHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCC
Confidence 34454555553345 89999984 289999999999999 999999999999999998888877765322 111
Q ss_pred -----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 146 -----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 146 -----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
....++.|.+..... . ....+|+.++.|++++++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~e~~~~~W~~~~el~~~ 130 (148)
T 2azw_A 89 HRQTAYYNPGYFYVANTWRQ---L-SEPLERTNTLHWVAPEEAVRL 130 (148)
T ss_dssp TTTEEEEEEEEEEEEEEEEE---C-SSCC-CCSEEEEECHHHHHHH
T ss_pred CCCcceEEEEEEEEEEcCcC---C-cCCCCceeeEEEeeHHHHHhh
Confidence 112244444444322 1 123478889999999999764
No 45
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.65 E-value=1.4e-16 Score=128.87 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=74.9
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeee--hhhhH
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV--IEPFL 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~--l~~~~ 143 (259)
.+.+|.+++++ .++ +|||++|+. ++|.|+||||++|+|| |+.+||+||++|||||.+..+..... ..+.+
T Consensus 13 ~~~~v~~~i~~-~~~--~vLl~~r~~----~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 84 (165)
T 1f3y_A 13 YRRNVGICLMN-NDK--KIFAASRLD----IPDAWQMPQGGIDEGE-DPRNAAIRELREETGVTSAEVIAEVPYWLTYDF 84 (165)
T ss_dssp CCCEEEEEEEC-TTS--CEEEEEETT----EEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCC
T ss_pred eeeeEEEEEEC-CCC--cEEEEecCC----CCCcEECCeeccCCCC-CHHHHHHHHHHHhhCCChhhhhcccccceeeec
Confidence 34455555665 345 899999874 3599999999999999 99999999999999998754322111 11100
Q ss_pred hh--------------hcceeeeEeeEeeccccCCCCC-----Cccchhhhcccchhhhcccc
Q 025031 144 SK--------------YLLRVVPVIGILHNRKAFKPTP-----NPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 144 ~~--------------~~~~v~~~v~~~~~~~~~~~~~-----~~~Ev~~v~wvpl~ell~~~ 187 (259)
.. .+..++.|++.+.... ..+.+ +++|+.++.|++++++.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 146 (165)
T 1f3y_A 85 PPKVREKLNIQWGSDWKGQAQKWFLFKFTGQD-QEINLLGDGSEKPEFGEWSWVTPEQLIDLT 146 (165)
T ss_dssp CHHHHHHHGGGSCSSCCSCBEEEEEEEECSCG-GGCCCCCCSSSCCSEEEEEEECHHHHHHHB
T ss_pred CccccccccccccccccCceEEEEEEEecCCc-ccccccCCCCCCChhheeEEecHHHHHHHh
Confidence 00 0123455666654321 12222 35799999999999998743
No 46
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.65 E-value=1.5e-16 Score=126.52 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=74.9
Q ss_pred ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehh----
Q 025031 67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIE---- 140 (259)
Q Consensus 67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~---- 140 (259)
..+|.+++++.++| +|||++|+.. +|.|+||||++|+|| ++.+||+||++||||+.+... .+++...
T Consensus 9 ~~~v~~~i~~~~~~--~vLl~~r~~~----~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 81 (150)
T 2o1c_A 9 PVSILVVIYAQDTK--RVLMLQRRDD----PDFWQSVTGSVEEGE-TAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEF 81 (150)
T ss_dssp SEEEEEEEEETTTC--EEEEEECSSS----TTCEESEEEECCTTC-CHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEE
T ss_pred ceEEEEEEEeCCCC--EEEEEEecCC----CCceECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeEEeeeceeee
Confidence 34666666663335 8999998764 689999999999999 999999999999999987653 3333211
Q ss_pred ----h---hHhh--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 141 ----P---FLSK--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 141 ----~---~~~~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
. .+.. ....++.|.+.+... . ....+|+.++.|++++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---~-~~~~~E~~~~~W~~~~el~~~ 132 (150)
T 2o1c_A 82 EIFSHLRHRYAPGVTRNTESWFCLALPHE---R-QIVFTEHLAYKWLDAPAAAAL 132 (150)
T ss_dssp ECCGGGGGGBCTTCCEEEEEEEEEEESSC---C-CCCCSSSSCEEEEEHHHHHHH
T ss_pred eeecccccccCCCCcceEEEEEEEEcCCC---C-CcChhHhhccEeecHHHHHhh
Confidence 1 1111 123344555554432 1 123479999999999999764
No 47
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.65 E-value=2.3e-16 Score=124.91 Aligned_cols=91 Identities=27% Similarity=0.324 Sum_probs=69.2
Q ss_pred EEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--hcceeeeEeeEeeccc
Q 025031 84 VILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--YLLRVVPVIGILHNRK 161 (259)
Q Consensus 84 vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~~~~v~~~v~~~~~~~ 161 (259)
|||++|... ++.|+||||++|+|| |+.+||+||++||||+.+....+++.+...... ....++.|++....
T Consensus 27 vLl~~r~~~----~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-- 99 (139)
T 2yyh_A 27 IVLIERKYP----PVGLALPGGFVEVGE-RVEEAAAREMREETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQG-- 99 (139)
T ss_dssp EEEEEECSS----SCSEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSCTTSCEEEEEEEEEEES--
T ss_pred EEEEEecCC----CCcEECccccCCCCC-CHHHHHHHHHHHHHCCCcccceEEEEECCCCcCCCceEEEEEEEEecCC--
Confidence 999999864 345999999999999 999999999999999999888887776543221 22334455555522
Q ss_pred cCCCCCCccchhhhcccchhhhc
Q 025031 162 AFKPTPNPGEVEEVFDAPLEMFL 184 (259)
Q Consensus 162 ~~~~~~~~~Ev~~v~wvpl~ell 184 (259)
.+. ..+|+.++.|++++++.
T Consensus 100 --~~~-~~~e~~~~~W~~~~el~ 119 (139)
T 2yyh_A 100 --EPK-AGSDAKKVKVYRLEEIP 119 (139)
T ss_dssp --CCC-CCTTEEEEEEECTTSCC
T ss_pred --ccC-CCCCcceEEEEEHHHCC
Confidence 222 45789999999999998
No 48
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.64 E-value=1.3e-16 Score=143.66 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=92.2
Q ss_pred ccCccceeEEEEEeecCCCceEEEEeeccccccccccee-ecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce---eeee
Q 025031 62 TFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETATREAKEEIGLDPSLV---DVVT 137 (259)
Q Consensus 62 ~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~w-sfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i---~~l~ 137 (259)
.++..+.+|.|.++..++++++++++||+..+..|||+| .++||++++|| ++.+||+||++||+||+...+ ..++
T Consensus 113 ~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GE-s~~eaA~REl~EElGI~~~~~~~l~~~g 191 (300)
T 3dup_A 113 TFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADL-SLRQNLIKECAEEADLPEALARQAIPVG 191 (300)
T ss_dssp GGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTS-CHHHHHHHHHHHHHCCCHHHHTTCEEEE
T ss_pred ccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCC-CHHHHHHHHHHHHhCCChhhhhhccccc
Confidence 457788899998887655667999999999999999999 58999999999 999999999999999987543 2334
Q ss_pred ehhhhH-hhhcc---eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 138 VIEPFL-SKYLL---RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 138 ~l~~~~-~~~~~---~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.+.+.. ...++ .++.|.+.+. .+..+.++++||+++.|+|++++.+.
T Consensus 192 ~i~y~~~~~~G~~~E~~~vy~~~l~--~~~~p~~~~~EV~~~~~v~~~El~~~ 242 (300)
T 3dup_A 192 AITYCMESPAGIKPDTLFLYDLALP--EDFRPHNTDGEMADFMLWPAAKVVEA 242 (300)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEECC--TTCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred eEEEEEecCCCeEEEEEEEEEEEec--CCCcCCCCchHhheEEEECHHHHHHH
Confidence 433222 11121 2233334443 34556789999999999999999864
No 49
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.1e-16 Score=126.03 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=68.2
Q ss_pred EEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceee
Q 025031 72 VCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVV 151 (259)
Q Consensus 72 i~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~ 151 (259)
+++++.+++ +|||++|.. +|.|+||||++|+|| |+.+||+||++||||+.+..+..+..+... ...+...+
T Consensus 9 ~~i~~~~~~--~vLl~~r~~-----~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~~~~~~~ 79 (146)
T 2jvb_A 9 AAIFNENLS--KILLVQGTE-----SDSWSFPRGKISKDE-NDIDCCIREVKEEIGFDLTDYIDDNQFIER-NIQGKNYK 79 (146)
T ss_dssp EEEBCTTSS--EEEEECCSS-----SSCCBCCEECCCSSS-CHHHHHHHHHHHHTSCCCSSSSCSSCEEEE-EETTEEEE
T ss_pred EEEEeCCCC--EEEEEEEcC-----CCcEECCcccCCCCC-CHHHHHHHHHHHHHCCCchHhccccccccc-ccCCceEE
Confidence 334443224 899999764 489999999999999 999999999999999988754322221111 11112233
Q ss_pred eEeeEe-eccccCCCCCCccchhhhcccchhhhccc
Q 025031 152 PVIGIL-HNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 152 ~~v~~~-~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.|++.. .......+ .+.+|+.++.|++++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~E~~~~~W~~~~el~~~ 114 (146)
T 2jvb_A 80 IFLISGVSEVFNFKP-QVRNEIDKIEWFDFKKISKT 114 (146)
T ss_dssp EEEECCCCSSSCCCC-CCSSSCCCEEEEEHHHHHTG
T ss_pred EEEEEeccccccCCc-CCcchhheeEEeEHHHHHhh
Confidence 333321 21111121 23689999999999999874
No 50
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.64 E-value=2.9e-16 Score=133.56 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=78.1
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL 143 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~ 143 (259)
...+.+|.+++++ ++ +|||++|.. +|.|+||||++|+|| |+.+||+||++||||+.+....+++.+....
T Consensus 65 ~~~~~~v~~vv~~--~~--~vLLv~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~v~~~~~l~~~~~~~ 134 (205)
T 3q1p_A 65 QTPKVDIRAVVFQ--NE--KLLFVKEKS-----DGKWALPGGWADVGY-TPTEVAAKEVFEETGYEVDHFKLLAIFDKEK 134 (205)
T ss_dssp CCCEEEEEEEEEE--TT--EEEEEEC--------CCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEHHH
T ss_pred CCCcceEEEEEEE--CC--EEEEEEEcC-----CCcEECCcCccCCCC-CHHHHHHHHHHHHHCCccccceEEEEEeccc
Confidence 3344556555665 34 899999874 489999999999999 9999999999999999998888888776543
Q ss_pred hh-----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 144 SK-----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 ~~-----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. .......|.+.+.. ..+.++ +|+.++.|++++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~E~~~~~w~~~~el~~l 178 (205)
T 3q1p_A 135 HQPSPSATHVYKIFIGCEIIG---GEKKTS-IETEEVEFFGENELPNL 178 (205)
T ss_dssp HSCCCCSSCEEEEEEEEEEEE---ECCCCC-TTSCCEEEECTTSCCCB
T ss_pred cCCCCCCceEEEEEEEEEecC---CccCCC-CcceEEEEEeHHHhhhc
Confidence 22 12223334444433 233445 89999999999998654
No 51
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.63 E-value=2.3e-16 Score=134.30 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=79.7
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL 143 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~ 143 (259)
...+.+|.++++++ | +|||++|. .|.|+||||++|+|| ++.+||+||++||||+.+....+++.+....
T Consensus 67 ~~~~~~v~~vv~~~--~--~vLLvrr~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~ 135 (206)
T 3o8s_A 67 QTPKLDTRAAIFQE--D--KILLVQEN------DGLWSLPGGWCDVDQ-SVKDNVVKEVKEEAGLDVEAQRVVAILDKHK 135 (206)
T ss_dssp -CCEEEEEEEEEET--T--EEEEEECT------TSCEECSEEECCTTS-CHHHHHHHHHHHHHCEEEEEEEEEEEEEHHH
T ss_pred CCCCccEEEEEEEC--C--EEEEEEec------CCeEECCeeccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEeccc
Confidence 34455666666653 4 89999988 489999999999999 9999999999999999998888888876432
Q ss_pred hh-----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 144 SK-----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 144 ~~-----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
.. .......|.+.+.. ..+..+ .|+.++.|++++++.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~E~~~~~w~~~~el~~l~ 180 (206)
T 3o8s_A 136 NNPAKSAHRVTKVFILCRLLG---GEFQPN-SETVASGFFSLDDLPPLY 180 (206)
T ss_dssp HCC-----CEEEEEEEEEEEE---ECCCCC-SSCSEEEEECTTSCCCBC
T ss_pred cCCCCCCceEEEEEEEEEecC---CeecCC-CCceEEEEEeHHHhhhcc
Confidence 21 12223344444433 233444 899999999999987643
No 52
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.63 E-value=1.2e-16 Score=139.60 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=80.5
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCC--CCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEE--GDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS- 144 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~--gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~- 144 (259)
.+|.++++.-.+++.+|||++|... +++|.|+||||++|+ || |+.+||+||++|||||.+..++.++.+.....
T Consensus 23 v~v~~vi~~~~~~~~~vLLv~R~~~--~~~g~W~lPGG~ve~~~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~ 99 (240)
T 3gz5_A 23 LTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDE-SLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRD 99 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEECCSS--SSTTCEECSEEECCTTTCS-BHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSS
T ss_pred cEEEEEEEEEeCCCcEEEEEECcCC--CCCCCEECCccccCCCCCc-CHHHHHHHHHHHHHCCCCCceeeEEEeCCCccC
Confidence 4444444422235569999999864 678999999999999 99 99999999999999999988888887654321
Q ss_pred h-hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 145 K-YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 145 ~-~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
. .......|++.+.... ...+.+|+.++.|++++++.+
T Consensus 100 ~~~~~~~~~y~a~~~~~~---~~~~~~e~~~~~W~~~~el~~ 138 (240)
T 3gz5_A 100 ARGWSVTVCYTALMSYQA---CQIQIASVSDVKWWPLADVLQ 138 (240)
T ss_dssp TTSCEEEEEEEEECCHHH---HHHHHTTCTTEEEEEHHHHTT
T ss_pred CCceEEEEEEEEEecccc---cCCCCCcccceEEecHHHccc
Confidence 1 1223344555544321 112457899999999999964
No 53
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.62 E-value=4.3e-16 Score=131.32 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=67.6
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCC-Cccee-eeeehhhhH
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLD-PSLVD-VVTVIEPFL 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~-~~~i~-~l~~l~~~~ 143 (259)
.+.++.+++++.+++ +|||++|.. .|.|+||||++|.|| |+.+||+||++|||||. ...+. .+..+..+.
T Consensus 44 ~h~~~~~vv~~~~~~--~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~ 115 (197)
T 3fcm_A 44 AHLTSSAFAVNKERN--KFLMIHHNI-----YNSWAWTGGHSDNEK-DQLKVAIKELKEETGVKNPTPLLDKAFALDVLT 115 (197)
T ss_dssp EEEEEEEEEECTTSC--EEEEEEETT-----TTEEECEEEECTTCC-BHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEE
T ss_pred ccEEEEEEEEECCCC--EEEEEEecC-----CCCEECCccccCCCC-CHHHHHHHHHHHHHCCCcccccCCCceEEEEee
Confidence 445555556653333 899999774 489999999999999 99999999999999998 32111 111111110
Q ss_pred hh----hc------ce-eeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 144 SK----YL------LR-VVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 ~~----~~------~~-v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. .+ .. ...|++.+.. .....++++|+.++.|+|++++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~ 167 (197)
T 3fcm_A 116 VNGHIKRGKYVSSHLHLNLTYLIECSE--DETLMLKEDENSGVMWIPFNEISKY 167 (197)
T ss_dssp ECCEEETTEEECCEEEEEEEEEEECCT--TSCCCCCC----CEEEEEGGGHHHH
T ss_pred ecCccccCcccCCceeEEEEEEEEeCC--CcccCCCcccccceEEccHHHHHhh
Confidence 00 01 11 1334444332 2234567799999999999999764
No 54
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.62 E-value=4.6e-16 Score=138.28 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=86.1
Q ss_pred ccccccCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee
Q 025031 58 RYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT 137 (259)
Q Consensus 58 ~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~ 137 (259)
.+...++....+|++++.. ++ +|||++|+... +|.|+||||++|+|| |+++||+||++|||||.+..+.+++
T Consensus 131 C~~~~yp~~~~~viv~v~~--~~--~vLL~rr~~~~---~g~w~lPgG~vE~GE-t~eeAa~REv~EEtGl~v~~~~~~~ 202 (269)
T 1vk6_A 131 CRERYYPQIAPCIIVAIRR--DD--SILLAQHTRHR---NGVHTVLAGFVEVGE-TLEQAVAREVMEESGIKVKNLRYVT 202 (269)
T ss_dssp SSCEECCCCEEEEEEEEEE--TT--EEEEEEETTTC---SSCCBCEEEECCTTC-CHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred CCCEecCCCCcEEEEEEEe--CC--EEEEEEecCCC---CCcEECCcCcCCCCC-CHHHHHHHHHHHHhCceeeeEEEEE
Confidence 3444555455566555544 34 89999998652 689999999999999 9999999999999999999888888
Q ss_pred ehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 138 VIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 138 ~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.....+. ...+..|++.+... .+.++.+|+.++.|++++++...
T Consensus 203 ~~~~~~~--~~~~~~f~a~~~~~---~~~~~~~E~~~~~W~~~~el~~l 246 (269)
T 1vk6_A 203 SQPWPFP--QSLMTAFMAEYDSG---DIVIDPKELLEANWYRYDDLPLL 246 (269)
T ss_dssp EEEEETT--EEEEEEEEEEEEEC---CCCCCTTTEEEEEEEETTSCCSC
T ss_pred EEecCCC--CEEEEEEEEEECCC---CcCCCCcceEEEEEEEHHHhhhc
Confidence 7653322 22445566655432 34567789999999999999764
No 55
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.61 E-value=1.1e-15 Score=128.18 Aligned_cols=106 Identities=21% Similarity=0.064 Sum_probs=77.7
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK 145 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~ 145 (259)
.+.+|.+++++ ++ +|||++|... ..+|.|+||||++|.|| |+.+||+||++|||||.+....+++.... ..
T Consensus 39 ~~~~v~~ii~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~ 109 (189)
T 3cng_A 39 PKVIVGCIPEW--EN--KVLLCKRAIA--PYRGKWTLPAGFMENNE-TLVQGAARETLEEANARVEIRELYAVYSL--PH 109 (189)
T ss_dssp CEEEEEEEEEE--TT--EEEEEEESSS--SSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEE--GG
T ss_pred CceEEEEEEEe--CC--EEEEEEccCC--CCCCeEECceeeccCCC-CHHHHHHHHHHHHHCCccccceeEEEEec--CC
Confidence 34455555555 35 8999999875 34789999999999999 99999999999999999877666655322 22
Q ss_pred hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031 146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184 (259)
Q Consensus 146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell 184 (259)
....++.|++..... .+. ..+|+.++.|++++++.
T Consensus 110 ~~~~~~~f~~~~~~~---~~~-~~~E~~~~~W~~~~el~ 144 (189)
T 3cng_A 110 ISQVYMLFRAKLLDL---DFF-PGIESLEVRLFGEQEIP 144 (189)
T ss_dssp GTEEEEEEEEEECCS---CCC-CCTTEEEEEEECTTTCC
T ss_pred CcEEEEEEEEEeCCC---ccC-CCccceeEEEECHHHcC
Confidence 233455566655432 222 35789999999999997
No 56
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.61 E-value=6e-16 Score=134.89 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=83.5
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCC------CCCc---hhhhhHHHHHhhCCCCcc-
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEG------DEDD---GETATREAKEEIGLDPSL- 132 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~g------E~s~---~~aA~REl~EE~GL~~~~- 132 (259)
+..+.||.|++++ .+| +|||++|+..+..+||.|++| ||++++| | ++ .+||+||++|||||.+..
T Consensus 56 g~~h~av~v~v~~-~~g--~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E-~~~~~~~Aa~REl~EElGi~~~~v 131 (235)
T 2dho_A 56 GLLHRAFSVFLFN-TEN--KLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEES-DALGVRRAAQRRLKAELGIPLEEV 131 (235)
T ss_dssp TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCGGGS
T ss_pred CceEEEEEEEEEc-CCC--EEEEEEecCcCCCCCCcEEeccCceecCCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence 4466778887776 455 899999999888899999999 5999999 7 74 999999999999998652
Q ss_pred ----eeeeeehhhhHh-hhc----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 133 ----VDVVTVIEPFLS-KYL----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 133 ----i~~l~~l~~~~~-~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
+..++.+.+... ..+ ..++.|++... ..+.++++|+.++.|++++++.+.
T Consensus 132 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~----~~~~~~~~Ev~~~~wv~~~el~~~ 190 (235)
T 2dho_A 132 PPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMN----VTLNPDPNEIKSYCYVSKEELKEL 190 (235)
T ss_dssp CGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHHH
T ss_pred ChhhcEEEEEEEEeccCCCccceeEEEEEEEEEEC----CCCcCChHHEEEEEEEcHHHHHHH
Confidence 455665432211 111 12334444432 244678899999999999999763
No 57
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.60 E-value=6.4e-17 Score=138.59 Aligned_cols=135 Identities=20% Similarity=0.127 Sum_probs=89.6
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCccee-----eeeehhhh
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVD-----VVTVIEPF 142 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~-----~l~~l~~~ 142 (259)
++|++++++ .++ +|||++| ++|.|+||||++|+||.++.+||+||++||||+.+..+. .++.....
T Consensus 45 ~~vv~~i~~-~~~--~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 115 (212)
T 1u20_A 45 QAKLFDRVP-IRR--VLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVRE 115 (212)
T ss_dssp CCEETTTEE-CCE--EEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEEC
T ss_pred ceEEEEEEe-cCC--EEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEecccc
Confidence 344444444 233 8999988 368999999999999878999999999999999887553 34444332
Q ss_pred HhhhcceeeeEeeEeeccc-------cCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceE
Q 025031 143 LSKYLLRVVPVIGILHNRK-------AFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKY 215 (259)
Q Consensus 143 ~~~~~~~v~~~v~~~~~~~-------~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~ 215 (259)
+. ....++.|++.+.... ......+.+|+.+++|+|++++.+... ..+.|. ...
T Consensus 116 ~~-~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~~~-------------~~p~f~-----~~~ 176 (212)
T 1u20_A 116 HP-QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVG-------------GLPAFL-----CNN 176 (212)
T ss_dssp TT-SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSST-------------BHHHHT-----TSC
T ss_pred CC-CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhhhc-------------CCchhh-----hhh
Confidence 22 3455667776654211 011123457889999999999965311 112222 134
Q ss_pred EeeehhHhhhhhhce
Q 025031 216 LIWGITAAILVRAAS 230 (259)
Q Consensus 216 ~IWGlTa~il~~~~~ 230 (259)
.||+++++|+..+..
T Consensus 177 ~i~~a~~~l~~~l~~ 191 (212)
T 1u20_A 177 FIGNSKSQLLYALRS 191 (212)
T ss_dssp BCTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 799999999876654
No 58
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.60 E-value=2.7e-16 Score=132.98 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=68.8
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|... +|.|+||||++|+|| ++++||+||++|||||.+....+++.+.... ....++.|++.+.....
T Consensus 55 ~vLLv~r~~~----~g~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~f~~~~~~~~~ 127 (194)
T 2fvv_A 55 EVLLVSSSRH----PDRWIVPGGGMEPEE-EPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLE 127 (194)
T ss_dssp EEEEEECSSC----TTSEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTEEEEEEEEEEEEECS
T ss_pred EEEEEEEeCC----CCcEECCCCcCCCCc-CHHHHHHHHHHHHhCCccccceEEEEEEcCC--CceEEEEEEEEEccccC
Confidence 8999998753 589999999999999 9999999999999999988888888765322 22234555555443111
Q ss_pred CCCCCCccchhhhcccchhhhcc
Q 025031 163 FKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
....+.++..++.|++++++.+
T Consensus 128 -~~~~~~e~~~~~~W~~~~el~~ 149 (194)
T 2fvv_A 128 -DWEDSVNIGRKREWFKIEDAIK 149 (194)
T ss_dssp -SCHHHHHHCCCEEEEEHHHHHH
T ss_pred -CCCCcccccceEEEEEHHHHHH
Confidence 1001112346889999999875
No 59
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.60 E-value=8.8e-16 Score=134.76 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=83.4
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCC-CCCCCC------CCCc---hhhhhHHHHHhhCCCCcc-
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPG-GKAEEG------DEDD---GETATREAKEEIGLDPSL- 132 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPG-G~ve~g------E~s~---~~aA~REl~EE~GL~~~~- 132 (259)
+..+.||.|++++ .+| +|||++|+..+..+||.|++|+ |++++| | ++ .+||+||++|||||.+..
T Consensus 67 g~~h~av~v~v~~-~~g--~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~E-t~~~~~eAA~REl~EElGi~~~~v 142 (246)
T 2pny_A 67 GLLHRAFSVVLFN-TKN--RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEK-DAIGVRRAAQRRLQAELGIPGEQI 142 (246)
T ss_dssp TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCTTTC
T ss_pred CcEEEEEEEEEEe-CCC--EEEEEEecCCCCCCCCceEeccCceeccCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence 3456777777776 455 8999999998888999999995 999999 7 77 899999999999998763
Q ss_pred ----eeeeeehhhhHh-hhc----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 133 ----VDVVTVIEPFLS-KYL----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 133 ----i~~l~~l~~~~~-~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
+..++.+.+... ..+ ..++.|++... ..+.++++|+.++.|++++++.+.
T Consensus 143 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~----~~~~~~~~Ev~~~~wv~~eel~~~ 201 (246)
T 2pny_A 143 SPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKN----VTLNPDPSETKSILYLSQEELWEL 201 (246)
T ss_dssp CGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHHH
T ss_pred CccccEEEEEEEEEecCCCceeeeEEEEEEEEEEC----CCCCCChHHeeEEEEEeHHHHHHH
Confidence 455555432211 111 12233444432 245678899999999999999763
No 60
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.59 E-value=1.5e-15 Score=124.95 Aligned_cols=84 Identities=25% Similarity=0.290 Sum_probs=61.6
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA 162 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~ 162 (259)
+|||++|. +|.|+||||++|+|| |+.+||+||++|||||.+..+..++.+.... ...+.|++.+.
T Consensus 28 ~vLL~~r~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~~f~~~~~---- 92 (163)
T 3f13_A 28 GVLVTASR------GGRYNLPGGKANRGE-LRSQALIREIREETGLRINSMLYLFDHITPF----NAHKVYLCIAQ---- 92 (163)
T ss_dssp EEEEEECC---------BBCSEEECCTTC-CHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEEEEEEEC-----
T ss_pred EEEEEEEC------CCeEECCceeCCCCC-CHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEEEEEEEEC----
Confidence 79999885 489999999999999 9999999999999999998888877643211 33444555432
Q ss_pred CCCCCCccchhhhcccchhh
Q 025031 163 FKPTPNPGEVEEVFDAPLEM 182 (259)
Q Consensus 163 ~~~~~~~~Ev~~v~wvpl~e 182 (259)
..+.++ +|+.++.|++.+.
T Consensus 93 ~~~~~~-~E~~~~~W~~~~~ 111 (163)
T 3f13_A 93 GQPKPQ-NEIERIALVSSPD 111 (163)
T ss_dssp CCCCCC-TTCCEEEEESSTT
T ss_pred CcCccC-CCceEEEEECccc
Confidence 234444 4999999999443
No 61
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.59 E-value=5.9e-16 Score=134.78 Aligned_cols=68 Identities=37% Similarity=0.538 Sum_probs=57.4
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCC-------------------chhhhhHHHHH
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDED-------------------DGETATREAKE 124 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s-------------------~~~aA~REl~E 124 (259)
..|.||++|++.+..+|+++|||++|+.+...++|.|.||||++|++|.+ +..||+||++|
T Consensus 6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~E 85 (232)
T 3qsj_A 6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAE 85 (232)
T ss_dssp CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHH
Confidence 34889999988774333389999999998778899999999999999933 58999999999
Q ss_pred hhCCCCc
Q 025031 125 EIGLDPS 131 (259)
Q Consensus 125 E~GL~~~ 131 (259)
||||.+.
T Consensus 86 E~Gl~l~ 92 (232)
T 3qsj_A 86 EIGWLLA 92 (232)
T ss_dssp HHSCCCS
T ss_pred HhCceec
Confidence 9999754
No 62
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.58 E-value=8.7e-16 Score=123.61 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=72.6
Q ss_pred eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031 69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL 148 (259)
Q Consensus 69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~ 148 (259)
+|.+++++ ++ +|||++| +|.|+||||++|+|| ++.+||+||++||||+.+....+++.....+...+.
T Consensus 21 ~~~~ii~~--~~--~vLl~~r-------~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 88 (154)
T 2pqv_A 21 RATALIVQ--NH--KLLVTKD-------KGKYYTIGGAIQVNE-STEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGV 88 (154)
T ss_dssp EEEECCEE--TT--EEEEEEE-------TTEEECEEEECBTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTE
T ss_pred EEEEEEEE--CC--EEEEEec-------CCeEECcccCcCCCC-CHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCC
Confidence 44444444 34 8999998 489999999999999 999999999999999998877777665433322221
Q ss_pred ----eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 149 ----RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 149 ----~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
..+.|++.+...... ...+.+|+.++.|++++++.+.
T Consensus 89 ~~~~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~ 129 (154)
T 2pqv_A 89 SYHNIEFHYLVDLLEDAPL-TMQEDEKRQPCEWIDLDKLQNI 129 (154)
T ss_dssp EEEEEEEEEEEEESSCCCS-EEEETTEEEEEEEEEGGGGGGS
T ss_pred cceEEEEEEEEEecCCCCc-ccCCCCceeeEEEeEHHHHhhc
Confidence 223444444322110 0123467889999999999874
No 63
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.58 E-value=2.7e-15 Score=123.10 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=78.6
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL-- 143 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-- 143 (259)
.+.+|.+++++ .+| +|||++|.. +|.|+||||++|.|| ++.+||+||++||||+.+..+.+++......
T Consensus 7 ~~~~v~~~i~~-~~~--~vLl~~r~~-----~~~w~~p~G~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~ 77 (164)
T 2kdv_A 7 YRPNVGIVICN-RQG--QVMWARRFG-----QHSWQFPQGGINPGE-SAEQAMYRELFEEVGLSRKDVRILASTRNWLRY 77 (164)
T ss_dssp EEEEEEEEEEC-TTS--EEEEEEETT-----CCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEE
T ss_pred CCcEEEEEEEc-cCC--EEEEEEEcC-----CCeEECCeeecCCCC-CHHHHHHHHHHHHHCCCccceEEEEEecceeEE
Confidence 34556666665 345 899999875 489999999999999 9999999999999999998888888764321
Q ss_pred --hh-----------hcceeeeEeeEeeccccCCCCCC---ccchhhhcccchhhhccc
Q 025031 144 --SK-----------YLLRVVPVIGILHNRKAFKPTPN---PGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 144 --~~-----------~~~~v~~~v~~~~~~~~~~~~~~---~~Ev~~v~wvpl~ell~~ 186 (259)
.. .+..++.|++.+.... ....++ .+|+.++.|++++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~l~~~~~~E~~~~~W~~~~e~~~~ 135 (164)
T 2kdv_A 78 KLPKRLVRWDTKPVCIGQKQKWFLLQLVSGD-AEINMQTSSTPEFDGWRWVSYWYPVRQ 135 (164)
T ss_dssp ECCTTTCCTTSSSCCCEEEEEEEEEEESSCG-GGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred ecCcceeeeccCcccccceeEEEEEEecCCc-cccccCCCCCchhceEEEecHHHhhhh
Confidence 00 0113455555544321 122332 359999999999987653
No 64
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.58 E-value=1.3e-15 Score=140.89 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEe
Q 025031 78 DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL 157 (259)
Q Consensus 78 ~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~ 157 (259)
.+| +|||++|... +.++|.|+||||++|.| ++++|+.||+.||+|+.+.....++.+.+.++.....++.|.+.+
T Consensus 250 ~~g--~vLL~rR~~~-g~~~GlWefPGG~ve~g--t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~~~~ 324 (369)
T 3fsp_A 250 DEG--RVLIRKRDST-GLLANLWEFPSCETDGA--DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRL 324 (369)
T ss_dssp SSS--EEEEEECCSS-STTTTCEECCEEECSSS--CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEEE
T ss_pred CCC--EEEEEECCCC-CCcCCcccCCCcccCCC--CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEEEEE
Confidence 345 8999999875 67999999999999998 889999999999999998888878777666666566666666654
Q ss_pred eccccCCCCCCccchhhhcccchhhhccc
Q 025031 158 HNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. ...|..++.|++++++.+.
T Consensus 325 ~~--------~~~e~~~~~Wv~~~el~~~ 345 (369)
T 3fsp_A 325 VH--------GGPVEEPYRLAPEDELKAY 345 (369)
T ss_dssp CC--------SSCCCTTEEEEEGGGGGGS
T ss_pred cC--------CCCCccccEEeeHHHhhhC
Confidence 32 1367889999999998763
No 65
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.56 E-value=1.6e-15 Score=134.89 Aligned_cols=111 Identities=17% Similarity=0.038 Sum_probs=70.4
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL 147 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~ 147 (259)
.+|.+++++..+| +|||++|... +|.|+||||++|+|| ++.+||+||++||||+++..+..+..+.. ....+
T Consensus 102 ~~v~avv~~~~~~--~vLLv~r~~~----~g~W~lPgG~ve~gE-s~~eAA~REl~EEtGl~~~~l~~~~~~~~-~~~~~ 173 (271)
T 2a6t_A 102 PVRGAIMLDMSMQ--QCVLVKGWKA----SSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFID-MTIRG 173 (271)
T ss_dssp CEEEEEEBCSSSS--EEEEEEESST----TCCCBCSEEECCTTC-CHHHHHHHHHHHHHCCCCTTTCCTTCEEE-EEETT
T ss_pred CeEEEEEEECCCC--EEEEEEEeCC----CCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCceeeeeeeeecc-CCcCC
Confidence 3444555553335 8999998653 589999999999999 99999999999999998876432221110 01112
Q ss_pred ceeeeEeeEeeccccCCCC-CCccchhhhcccchhhhcccc
Q 025031 148 LRVVPVIGILHNRKAFKPT-PNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 148 ~~v~~~v~~~~~~~~~~~~-~~~~Ev~~v~wvpl~ell~~~ 187 (259)
..++.|++..... ..... .+.+|+.++.|++++++.+..
T Consensus 174 ~~~~~f~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~ 213 (271)
T 2a6t_A 174 QNVRLYIIPGISL-DTRFESRTRKEISKIEWHNLMDLPTFK 213 (271)
T ss_dssp EEEEEEEECCCCT-TCCCC------EEEEEEEEGGGSTTCC
T ss_pred ceEEEEEEEEecC-cccCCCCCccceeEEEEEEHHHHHHHH
Confidence 2344455543221 11112 256899999999999997643
No 66
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.56 E-value=3.1e-15 Score=137.70 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=74.8
Q ss_pred CceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh-------------
Q 025031 80 GELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY------------- 146 (259)
Q Consensus 80 g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~------------- 146 (259)
++.+|||++|... |.|+||||++|+|| ++.+||+||++|||||.+....+++.....+...
T Consensus 36 ~~~~vLLv~r~~~-----g~W~lPgG~ve~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 109 (364)
T 3fjy_A 36 DSIEVCIVHRPKY-----DDWSWPKGKLEQNE-THRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTAD 109 (364)
T ss_dssp TTEEEEEEEETTT-----TEEECCEEECCTTC-CHHHHHHHHHHHHHSCCEEEEEEEEEEC-------------------
T ss_pred CceEEEEEEcCCC-----CCEECCcCCCCCCC-CHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccC
Confidence 4569999998553 89999999999999 9999999999999999998888888765544321
Q ss_pred cceeeeEeeEeeccc---------cCCCCCCccchhhhcccchhhhcccc
Q 025031 147 LLRVVPVIGILHNRK---------AFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~---------~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
...++.|++...... .....++++|+.++.|++++++.+..
T Consensus 110 ~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 159 (364)
T 3fjy_A 110 TKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKIL 159 (364)
T ss_dssp --CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHC
T ss_pred ceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHh
Confidence 244566666654321 11223567899999999999987643
No 67
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.55 E-value=6e-15 Score=131.06 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=70.7
Q ss_pred ceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHh-h-hcceeeeEeeE
Q 025031 81 ELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLS-K-YLLRVVPVIGI 156 (259)
Q Consensus 81 ~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~-~-~~~~v~~~v~~ 156 (259)
+.+|||++|... +++|.|+||||++|+|| ++.+||+||++|||||.+. .+..++.+..... . .....+.|++.
T Consensus 55 ~~~VLLv~R~~~--p~~g~W~lPGG~ve~gE-s~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~~r~~~~~~~~~~y~a~ 131 (273)
T 2fml_A 55 QLKVLLIQRKGH--PFRNSWALPGGFVNRNE-STEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAF 131 (273)
T ss_dssp EEEEEEEEECSS--SSTTCEECCEEECCTTS-CHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEE
T ss_pred CcEEEEEEccCC--CCCCcEECCccCCCCCc-CHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCCCCCCCceEEEEEEEEE
Confidence 679999999876 67899999999999999 9999999999999997654 4555555432211 1 11233455565
Q ss_pred eeccccCCCCCCccchhhhcccchhhhcc
Q 025031 157 LHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 157 ~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
+.... ....+|+.++.|++++++.+
T Consensus 132 ~~~~~----~~~~~E~~~~~W~~~~e~~~ 156 (273)
T 2fml_A 132 IGEEP----LIAGDDAKEVHWFNLERHGQ 156 (273)
T ss_dssp CCCCC----CCCCTTEEEEEEEEEEEETT
T ss_pred eCCCC----CCCCcceeeEEEEEhhHhhh
Confidence 54321 23457899999999997543
No 68
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.55 E-value=4.5e-15 Score=124.53 Aligned_cols=94 Identities=19% Similarity=0.141 Sum_probs=68.9
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc-----ceeeeEeeEe
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL-----LRVVPVIGIL 157 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~-----~~v~~~v~~~ 157 (259)
+|||++|.. +|.|+||||++|+|| ++.+||+||++|||||.+....+++.+........ ..++.|.+..
T Consensus 16 ~vLL~~r~~-----~g~W~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~ 89 (188)
T 3fk9_A 16 QVLLLQKPR-----RGWWVAPGGKMEAGE-SILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATE 89 (188)
T ss_dssp EEEEEECTT-----TCCEECCEEECCTTC-CHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEEEEEESC
T ss_pred EEEEEEeCC-----CCeEECCeecccCCC-CHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEEEEEEEEC
Confidence 899999853 589999999999999 99999999999999999888888777654432221 1233444432
Q ss_pred eccccCCCCCCccchhhhcccchhhhccc
Q 025031 158 HNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.. ..+.. ..|..++.|++++++.+.
T Consensus 90 ~~---~~~~~-~~e~~~~~W~~~~el~~~ 114 (188)
T 3fk9_A 90 HE---GEMLK-QSPEGKLEWKKKDEVLEL 114 (188)
T ss_dssp EE---SCCCS-EETTEEEEEEEGGGGGGS
T ss_pred CC---CCCcC-CCCCEeEEEEEHHHhhhC
Confidence 22 22222 345578999999999764
No 69
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.52 E-value=5.9e-15 Score=133.56 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=72.2
Q ss_pred cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh---hh
Q 025031 66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE---PF 142 (259)
Q Consensus 66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~---~~ 142 (259)
.+.+|.++++. ++ +|||++|... ..+|.|+||||++|+|| ++.+||+||++||||+.+....+++.+. .+
T Consensus 202 ~~~~v~~vi~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 274 (341)
T 2qjo_A 202 TFITTDAVVVQ--AG--HVLMVRRQAK--PGLGLIALPGGFIKQNE-TLVEGMLRELKEETRLKVPLPVLRGSIVDSHVF 274 (341)
T ss_dssp CEEEEEEEEEE--TT--EEEEEECCSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEE
T ss_pred CceEEEEEEEe--CC--EEEEEEecCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHhhhhCCccccccccccccceEEE
Confidence 34555555554 34 8999999864 45799999999999999 9999999999999999988665543211 11
Q ss_pred H--hh--h-cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031 143 L--SK--Y-LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185 (259)
Q Consensus 143 ~--~~--~-~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~ 185 (259)
. .. . ....+.|++.+.... .....+.+|+.++.|++++++.+
T Consensus 275 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~ 321 (341)
T 2qjo_A 275 DAPGRSLRGRTITHAYFIQLPGGE-LPAVKGGDDAQKAWWMSLADLYA 321 (341)
T ss_dssp CCTTSCTTSCEEEEEEEEECCSSS-CCCCC------CEEEEEHHHHHH
T ss_pred eCCCCCCCCcEEEEEEEEEecCCC-cCccCCCCceeeEEEeeHHHHhh
Confidence 1 11 1 122345666554321 11124568999999999999976
No 70
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.51 E-value=6.7e-15 Score=119.16 Aligned_cols=49 Identities=29% Similarity=0.419 Sum_probs=43.7
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT 137 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~ 137 (259)
+|||++|.. +|.|+||||++|+|| ++.+||+||++||||+.+.....++
T Consensus 13 ~vLL~~r~~-----~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~ 61 (156)
T 1k2e_A 13 KVLLVKHKR-----LGVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTY 61 (156)
T ss_dssp EEEEEECTT-----TCSEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEECCCCC
T ss_pred EEEEEEEcC-----CCcEECCeeecCCCC-CHHHHHHHHHHHHHCCcceecccee
Confidence 899999875 489999999999999 9999999999999999887666554
No 71
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.51 E-value=2.8e-15 Score=128.69 Aligned_cols=98 Identities=24% Similarity=0.222 Sum_probs=65.6
Q ss_pred EEEEeecccccc--cccceeec-CCCCCCCCCCC------chhhhhHHHHHhhCCCCcceeeeeehhhhH-hhhcce-ee
Q 025031 83 RVILTKRASRLS--THSGEVSL-PGGKAEEGDED------DGETATREAKEEIGLDPSLVDVVTVIEPFL-SKYLLR-VV 151 (259)
Q Consensus 83 ~vLL~kRs~~~~--~~~G~wsf-PGG~ve~gE~s------~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-~~~~~~-v~ 151 (259)
+||+++|..... ...|.|+| |||++|+|| + +++||+||++|||||.+....+++.+.... ...... ..
T Consensus 80 rvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GE-s~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~~~~~~l~~ 158 (211)
T 3e57_A 80 RVLITKRTTKQSEKRLHNLYSLGIGGHVREGD-GATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTEVSRVHLGA 158 (211)
T ss_dssp EEEEEEC------------CBSSEECCCBGGG-CSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSHHHHTEEEE
T ss_pred EEEEEEECCCCCcccccCCcccccceEEeCCC-CCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCCCCeEEEEE
Confidence 899999987642 25688999 999999999 7 499999999999999988888888765421 111111 22
Q ss_pred eEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031 152 PVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186 (259)
Q Consensus 152 ~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~ 186 (259)
.|.+.... . .+...|+.++.|++++++.+.
T Consensus 159 ~f~~~~~~---g--~~~~~E~~~~~W~~~~eL~~~ 188 (211)
T 3e57_A 159 LFLGRGKF---F--SVKEKDLFEWELIKLEELEKF 188 (211)
T ss_dssp EEEEEEEE---E--EESCTTTCEEEEEEHHHHHHH
T ss_pred EEEEEeCC---c--eeCCCCeEEEEEEEHHHHHHh
Confidence 34444332 1 235568889999999999774
No 72
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.50 E-value=1.8e-14 Score=131.23 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=76.5
Q ss_pred CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeeh---h
Q 025031 64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVI---E 140 (259)
Q Consensus 64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l---~ 140 (259)
+....+|.++++. ++ +|||++|... ..+|.|+||||++|+|| |+++||+||++||||+.+....+++.+ .
T Consensus 205 ~~~~~~v~~vv~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~v~~~~~~~~~~~~~ 277 (352)
T 2qjt_B 205 KPNFVTVDALVIV--ND--HILMVQRKAH--PGKDLWALPGGFLECDE-TIAQAIIRELFEETNINLTHEQLAIAKRCEK 277 (352)
T ss_dssp CCEEEEEEEEEEE--TT--EEEEEEESSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSCCHHHHHHHEEEEE
T ss_pred CCCceEEEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHHHhhCCCcccchhcceeeeeE
Confidence 3344555555554 34 8999999875 35799999999999999 999999999999999998754433211 0
Q ss_pred hh--Hhh---hcceeeeEeeEeeccccCCCCCCccchhhhcccch-hhhcc
Q 025031 141 PF--LSK---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPL-EMFLK 185 (259)
Q Consensus 141 ~~--~~~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl-~ell~ 185 (259)
.+ ... .....+.|++.+..........+.+|+.++.|+++ +++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~ 328 (352)
T 2qjt_B 278 VFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKN 328 (352)
T ss_dssp EECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHH
T ss_pred EecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHh
Confidence 11 111 11234455565543210111234689999999999 99876
No 73
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.44 E-value=1.9e-14 Score=123.97 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=79.0
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcc--eeeeeehhhhHhh-hcceeeeEeeEeec
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSL--VDVVTVIEPFLSK-YLLRVVPVIGILHN 159 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~--i~~l~~l~~~~~~-~~~~v~~~v~~~~~ 159 (259)
++||+.|. +|.|+||||++|+||.++++||+||++||||+.+.. +..+..+...... .....+.|++.+..
T Consensus 66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~ 139 (217)
T 2xsq_A 66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL 139 (217)
T ss_dssp EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence 45666654 489999999999998789999999999999998863 2222222111111 12234445555442
Q ss_pred ccc-------CCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhHhhhhhhcee
Q 025031 160 RKA-------FKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASV 231 (259)
Q Consensus 160 ~~~-------~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~il~~~~~~ 231 (259)
... .....+.+|+.+++|+|++++.+..+ .+|.|- ....|||++++|+..+...
T Consensus 140 ~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d~~~-------------~~P~~L-----~~~~l~~~~~~i~~~l~~~ 200 (217)
T 2xsq_A 140 EELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG-------------GLPTFL-----ENSFIGSAREQLLEALQDL 200 (217)
T ss_dssp HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTTSST-------------BHHHHT-----TSCBCTTHHHHHHHHHHHT
T ss_pred ccceecccccccccccCCceeeEEEEEHHHhhhccc-------------cCcHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 111 00123457899999999999865322 112221 1246899999999888653
No 74
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.32 E-value=8.2e-13 Score=118.50 Aligned_cols=45 Identities=31% Similarity=0.384 Sum_probs=40.9
Q ss_pred CceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC
Q 025031 80 GELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP 130 (259)
Q Consensus 80 g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~ 130 (259)
+.++|||++|... |.|+||||++|+|| ++.+||+||++||||+..
T Consensus 137 ~~l~vLl~~r~~~-----g~W~lPGG~Ve~GE-s~~eAA~REl~EETGl~~ 181 (292)
T 1q33_A 137 HILQFVAIKRKDC-----GEWAIPGGMVDPGE-KISATLKREFGEEALNSL 181 (292)
T ss_dssp BCEEEEEEECTTT-----CSEECCCEECCTTC-CHHHHHHHHHHHHHSCGG
T ss_pred CceEEEEEEecCC-----CcEeCCCcccCCCC-CHHHHHHHHHHHHhCCcc
Confidence 3578999999864 89999999999999 999999999999999973
No 75
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.91 E-value=5.8e-10 Score=94.45 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=48.3
Q ss_pred cCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCC
Q 025031 63 FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128 (259)
Q Consensus 63 ~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL 128 (259)
.+.|+.++.|+++++ .+.++|||.++.. +.|.||||++|+|| ++++|+.||+.||+|+
T Consensus 55 ~g~R~sV~avil~~~-~~~phVLLlq~~~------~~f~LPGGkle~gE-~~~eaL~REL~EELg~ 112 (208)
T 3bho_A 55 IGMRRTVEGVLIVHE-HRLPHVLLLQLGT------TFFKLPGGELNPGE-DEVEGLKRLMTEILGR 112 (208)
T ss_dssp HCSEEEEEEEEEEEE-TTEEEEEEEEEET------TEEECSEEECCTTC-CHHHHHHHHHHHHHCC
T ss_pred hCCceEEEEEEEEcC-CCCcEEEEEEcCC------CcEECCCcccCCCC-CHHHHHHHHHHHHhCC
Confidence 366777777777763 4557899999743 58999999999999 9999999999999995
No 76
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.85 E-value=1.2e-09 Score=91.70 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=46.3
Q ss_pred EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCC-CCcceeeeeehhhhHhhhcceeeeEeeEe
Q 025031 83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL-DPSLVDVVTVIEPFLSKYLLRVVPVIGIL 157 (259)
Q Consensus 83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL-~~~~i~~l~~l~~~~~~~~~~v~~~v~~~ 157 (259)
.||++.|-. |.|+||||++|+||.|+++|+.||+.||+|+ .+.....+.....-+. ..+..+.|.+.+
T Consensus 45 ~iLmQ~R~~------G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl 113 (214)
T 3kvh_A 45 SVLMQMRFD------GLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQL 113 (214)
T ss_dssp EEEEEEETT------SCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEEC
T ss_pred eEEEeeeeC------CEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEe
Confidence 467776553 8999999999999999999999999999997 5666666655433332 234455555543
No 77
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=98.52 E-value=1.1e-07 Score=86.19 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=61.5
Q ss_pred eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhh-CCCCcceeeeeehhhhHhhh
Q 025031 68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEI-GLDPSLVDVVTVIEPFLSKY 146 (259)
Q Consensus 68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~-GL~~~~i~~l~~l~~~~~~~ 146 (259)
..|.+++.. +| +|||+ .+ .| |++|||.++. +..++|+||++||+ ||.++...+++.++... .
T Consensus 184 ~~vgaii~~--~g--~vLL~--~~-----~G-W~LPG~~~~~---~~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~ 246 (321)
T 3rh7_A 184 IRLGAVLEQ--QG--AVFLA--GN-----ET-LSLPNCTVEG---GDPARTLAAYLEQLTGLNVTIGFLYSVYEDKS--D 246 (321)
T ss_dssp EEEEEEEES--SS--CEEEB--CS-----SE-EBCCEEEESS---SCHHHHHHHHHHHHHSSCEEEEEEEEEEECTT--T
T ss_pred ceEEEEEEE--CC--EEEEe--eC-----CC-ccCCcccCCC---ChhHHHHHHHHHHhcCCEEeeceEEEEEEcCC--C
Confidence 445554444 35 79999 22 38 9999886554 44569999999997 99999888888765432 1
Q ss_pred cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031 147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187 (259)
Q Consensus 147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~ 187 (259)
......|.+.+.+. +..++.|++++++....
T Consensus 247 ~~~~i~f~~~~~~g----------~~~e~~~f~~~elp~~~ 277 (321)
T 3rh7_A 247 GRQNIVYHALASDG----------APRQGRFLRPAELAAAK 277 (321)
T ss_dssp CCEEEEEEEEECSS----------CCSSSEEECHHHHTTCE
T ss_pred ceEEEEEEEEeCCC----------CeeeeEEECHHHCCCcc
Confidence 12222344443321 12778999999997664
No 78
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=25.16 E-value=21 Score=20.15 Aligned_cols=12 Identities=33% Similarity=0.315 Sum_probs=9.2
Q ss_pred HHHHHHHhhccC
Q 025031 12 LIVIAQHLRDYK 23 (259)
Q Consensus 12 ~~~~~~~l~~~~ 23 (259)
=-.||||||+.+
T Consensus 17 EDkLAqRLRALR 28 (29)
T 3ggz_E 17 EDKLAQRLRALR 28 (29)
T ss_pred hHHHHHHHHHHc
Confidence 356999999864
Done!