BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025033
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 21 LSIGVGLATEGWPEGMYDGLGXXXXXXXXXXXTAISDYKQSLQFRDLDREKKKIFIQ--- 77
L+ G+ ATE P+ D L T Y Q + + K + Q
Sbjct: 88 LAYGIQAATEEEPQN--DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQAL 145
Query: 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMY---- 133
V R+G++ ++ ++VVGD+V + GD++PAD IS +D SSL+GESEP
Sbjct: 146 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPD 205
Query: 134 ICDENPF-----LLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176
+ENP T +G+ + +V G RT G++ TL G+
Sbjct: 206 FTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIA-TLASGL 252
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 21 LSIGVGLATEGWPEGMYDGLGXXXXXXXXXXXTAISDYKQSLQFRDLDREKKKIFIQ--- 77
L+ G+ ATE P+ D L T Y Q + + K + Q
Sbjct: 82 LAYGIQAATEEEPQN--DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQAL 139
Query: 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMY---- 133
V R+G++ ++ ++VVGD+V + GD++PAD IS +D SSL+GESEP
Sbjct: 140 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPD 199
Query: 134 ICDENPF-----LLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176
+ENP T +G+ + +V G RT G++ TL G+
Sbjct: 200 FTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIA-TLASGL 246
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 21 LSIGVGLATEGWP--EGMYDGLGXXXXXXXXXXXTAISDYKQSLQFRDLDREKKKIFIQ- 77
L+ G+ ATE P + +Y G+ S Y+++ R +D K + Q
Sbjct: 118 LAYGIQAATEDEPANDNLYLGV---VLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQA 174
Query: 78 -VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMY--- 133
V RDG++ ++ +V GD+V + GD++PAD IS + +D SSL+GESEP
Sbjct: 175 LVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSP 234
Query: 134 -ICDENPF-----LLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176
ENP T +G+ + +V G RT G++ TL G+
Sbjct: 235 EFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIA-TLASGL 282
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Query: 77 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD 136
+V RDG+ + LV GDIV + +GD +PAD + G L +D+S+L+GES P+
Sbjct: 133 KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPV---T 189
Query: 137 ENP--FLLAGTKVQDGSVKMLVTTVGMRTEWGK---LMETLNE 174
++P + +G+ + G ++ +V G+ T +GK L+++ N+
Sbjct: 190 KHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ 232
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 85 QKVSIYDLVVGDIVHLSIGDQVPAD--GIFISGYSLLIDESSLSGES-----------EP 131
Q++ D+V GDIV +++GD+VPAD + I +L +D+S L+GES +P
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 132 MYIC-DENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL 172
+ D+ L +GT + G +V T G+ TE GK+ + +
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 239
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 85 QKVSIYDLVVGDIVHLSIGDQVPAD--GIFISGYSLLIDESSLSGES-----------EP 131
Q++ D+V GDIV +++GD+VPAD + I +L +D+S L+GES +P
Sbjct: 139 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 198
Query: 132 MYIC-DENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL 172
+ D+ L +GT + G +V T G+ TE GK+ + +
Sbjct: 199 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 240
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 85 QKVSIYDLVVGDIVHLSIGDQVPAD--GIFISGYSLLIDESSLSGES-----------EP 131
Q++ D+V GDIV +++GD+VPAD + I +L +D+S L+GES +P
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 132 MYIC-DENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL 172
+ D+ L +GT + G +V T G+ TE GK+ + +
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 239
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMY---- 133
V RDG + +++ LVVGD+V + GD+VPAD + +D SSL+GESEP
Sbjct: 181 VIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPE 240
Query: 134 ICDENPF-----LLAGTKVQDGSVKMLVTTVGMRTEWGKL 168
E+P T +G+ + LV G RT G++
Sbjct: 241 CTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRI 280
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 85 QKVSIYDLVVGDIVHLSIGDQVPAD--GIFISGYSLLIDESSLSGES-----------EP 131
Q++ D+V GDIV +++GD+VPAD + I +L +D+S L+GES +P
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 132 MYIC-DENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL 172
+ D+ L +GT + G +V T G+ TE GK+ + +
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQM 239
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE 137
V RDG+ V + ++ VGDIV + G+++P DG+ + G S +DES +SGE P+ + +
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-LKSK 194
Query: 138 NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176
+ T G +K+ T VG T ++++ + + M
Sbjct: 195 GDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAM 233
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE 137
V RDG+ V + ++ VGDIV + G+++P DG+ + G S +DES +SGE P+ + +
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-LKSK 272
Query: 138 NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176
+ T G +K+ T VG T ++++ + + M
Sbjct: 273 GDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAM 311
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE 137
V RDG+ V + ++ VGDIV + G+++P DG+ + G S +DES +SGE P+ + +
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-LKSK 73
Query: 138 NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176
+ T G +K+ T VG T ++++ + + M
Sbjct: 74 GDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAM 112
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 77 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD 136
++ DG ++VS+ ++ VGD++ + G+++P DG G S +DES ++G EP+ +
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTG--EPIPVAK 285
Query: 137 ENPFLLAGTKV-QDGSVKMLVTTVGMRTEWGKLMETLNE 174
E + G + Q GS M VG T ++++ +++
Sbjct: 286 EASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSD 324
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 53 TAISDYKQSLQFRDL-DREKKKIFIQ--VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPAD 109
A+ + Q Q + D KK + ++ V RDG +++ ++V GDI+ + G +PAD
Sbjct: 154 NAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPAD 213
Query: 110 GIFISGYSLL-IDESSLSGESEPM--YICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWG 166
G ++ + L +D+S+L+GES + + D+ + A + V+ G +++T G T G
Sbjct: 214 GRIVTDDAFLQVDQSALTGESLAVDKHKGDQ---VFASSAVKRGEAFVVITATGDNTFVG 270
Query: 167 KLMETLNEGMFDSWLFV-------GILVLTVAFQIIIV 197
+ +N S F IL++ V F ++IV
Sbjct: 271 RAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIV 308
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 95 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENP--FLLAGTKVQDGSV 152
GDI+ + G + P DG I G+S ++DES ++GE+ P+ + P ++AG+ Q+GS+
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMPVA---KKPGSTVIAGSINQNGSL 100
Query: 153 KMLVTTVGMRTEWGKLMETLNEG 175
+ T VG T ++++ + E
Sbjct: 101 LICATHVGADTTLSQIVKLVEEA 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,314,833
Number of Sequences: 62578
Number of extensions: 267684
Number of successful extensions: 580
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 19
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)