Query 025033
Match_columns 259
No_of_seqs 203 out of 2048
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2217 ZntA Cation transport 100.0 1.9E-42 4.2E-47 331.7 15.3 238 11-255 149-396 (713)
2 TIGR01647 ATPase-IIIA_H plasma 100.0 3.9E-41 8.4E-46 329.4 20.6 242 1-255 28-278 (755)
3 TIGR01522 ATPase-IIA2_Ca golgi 100.0 1.7E-39 3.6E-44 322.9 21.5 240 1-253 52-314 (884)
4 PRK10517 magnesium-transportin 100.0 4.2E-39 9.2E-44 319.2 21.8 242 1-255 95-363 (902)
5 TIGR01517 ATPase-IIB_Ca plasma 100.0 7.6E-39 1.7E-43 319.9 20.9 252 1-253 88-366 (941)
6 TIGR01524 ATPase-IIIB_Mg magne 100.0 1.1E-38 2.5E-43 315.8 21.1 241 1-255 61-328 (867)
7 PRK11033 zntA zinc/cadmium/mer 100.0 1.3E-38 2.8E-43 310.9 18.6 231 11-255 189-428 (741)
8 PRK01122 potassium-transportin 100.0 4.3E-38 9.2E-43 301.5 19.8 247 5-257 29-292 (679)
9 KOG0207 Cation transport ATPas 100.0 5E-39 1.1E-43 305.4 13.1 221 32-256 336-574 (951)
10 PRK15122 magnesium-transportin 100.0 1.1E-37 2.5E-42 309.3 22.4 249 1-255 73-361 (903)
11 TIGR01511 ATPase-IB1_Cu copper 100.0 5.1E-38 1.1E-42 298.8 17.8 237 11-254 20-268 (562)
12 TIGR01497 kdpB K+-transporting 100.0 2.6E-37 5.6E-42 295.6 20.8 250 5-256 28-292 (675)
13 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.2E-37 2.7E-42 310.4 19.3 249 3-253 1-279 (917)
14 PRK10671 copA copper exporting 100.0 1.3E-37 2.8E-42 308.3 17.9 215 35-254 284-507 (834)
15 TIGR01512 ATPase-IB2_Cd heavy 100.0 2.9E-37 6.2E-42 292.4 18.9 226 13-254 3-237 (536)
16 TIGR01106 ATPase-IIC_X-K sodiu 100.0 6.5E-37 1.4E-41 307.2 21.3 249 1-254 64-335 (997)
17 PRK14010 potassium-transportin 100.0 7.3E-37 1.6E-41 292.7 19.4 247 5-256 28-291 (673)
18 TIGR01523 ATPase-IID_K-Na pota 100.0 2.3E-36 4.9E-41 303.4 21.7 166 1-175 54-233 (1053)
19 TIGR01525 ATPase-IB_hvy heavy 100.0 1.2E-35 2.6E-40 282.7 18.1 226 13-254 3-237 (556)
20 KOG0202 Ca2+ transporting ATPa 100.0 6.4E-36 1.4E-40 281.7 11.0 228 1-237 51-301 (972)
21 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.6E-35 3.4E-40 252.2 11.6 211 42-256 2-227 (230)
22 KOG0204 Calcium transporting A 100.0 3.4E-35 7.4E-40 276.8 12.5 183 1-183 147-330 (1034)
23 TIGR01657 P-ATPase-V P-type AT 100.0 5.5E-34 1.2E-38 287.7 22.0 232 1-244 166-428 (1054)
24 COG0474 MgtA Cation transport 100.0 3.9E-34 8.4E-39 284.5 18.5 224 2-232 73-317 (917)
25 KOG0205 Plasma membrane H+-tra 100.0 2.1E-34 4.6E-39 264.8 11.8 224 2-229 64-293 (942)
26 TIGR01494 ATPase_P-type ATPase 100.0 2.3E-31 5E-36 250.5 14.8 206 45-255 5-222 (499)
27 KOG0208 Cation transport ATPas 100.0 3.8E-29 8.2E-34 238.9 18.0 220 1-232 187-437 (1140)
28 TIGR01652 ATPase-Plipid phosph 99.9 9.3E-27 2E-31 235.7 18.9 164 1-171 19-235 (1057)
29 KOG0203 Na+/K+ ATPase, alpha s 99.9 2E-27 4.4E-32 224.2 7.7 179 2-181 87-279 (1019)
30 COG2216 KdpB High-affinity K+ 99.9 2.4E-25 5.1E-30 201.2 12.0 188 6-195 29-227 (681)
31 PLN03190 aminophospholipid tra 99.9 1.3E-23 2.9E-28 212.6 21.7 160 1-168 105-314 (1178)
32 KOG0209 P-type ATPase [Inorgan 99.9 9.4E-24 2E-28 198.9 7.5 231 3-246 192-461 (1160)
33 KOG0210 P-type ATPase [Inorgan 99.8 1.4E-18 3E-23 161.9 17.8 234 2-244 98-384 (1051)
34 KOG0206 P-type ATPase [General 99.6 8.4E-16 1.8E-20 153.1 11.7 165 1-173 50-266 (1151)
35 smart00831 Cation_ATPase_N Cat 94.2 0.058 1.3E-06 36.0 3.2 26 1-26 38-63 (64)
36 COG0474 MgtA Cation transport 93.6 1.1 2.3E-05 46.0 12.4 123 43-167 113-252 (917)
37 KOG4383 Uncharacterized conser 93.6 0.19 4.2E-06 48.7 6.5 84 34-117 86-199 (1354)
38 KOG0204 Calcium transporting A 91.8 0.038 8.3E-07 54.6 -0.8 80 159-238 919-1009(1034)
39 PF03453 MoeA_N: MoeA N-termin 75.1 5.4 0.00012 31.9 4.5 62 88-153 80-143 (162)
40 PF10749 DUF2534: Protein of u 72.6 12 0.00026 26.3 5.0 39 200-239 35-79 (85)
41 PF01455 HupF_HypC: HupF/HypC 70.7 15 0.00032 25.0 5.1 32 74-105 17-51 (68)
42 PF15584 Imm44: Immunity prote 65.9 2.6 5.6E-05 30.4 0.6 19 94-112 13-31 (94)
43 COG5547 Small integral membran 65.7 35 0.00077 22.3 6.2 51 2-59 2-52 (62)
44 PRK11507 ribosome-associated p 63.0 12 0.00025 25.7 3.3 26 77-102 38-63 (70)
45 TIGR01523 ATPase-IID_K-Na pota 62.9 2.1E+02 0.0045 30.2 14.4 79 41-120 89-176 (1053)
46 PF03120 DNA_ligase_OB: NAD-de 61.6 4.2 9E-05 28.8 1.0 22 87-108 45-67 (82)
47 COG0272 Lig NAD-dependent DNA 60.7 11 0.00025 36.9 4.1 29 88-116 364-394 (667)
48 smart00306 HintN Hint (Hedgeho 60.5 12 0.00027 26.4 3.4 27 75-101 73-99 (100)
49 PF13275 S4_2: S4 domain; PDB: 60.1 5.6 0.00012 26.8 1.4 27 78-105 35-61 (65)
50 PF11694 DUF3290: Protein of u 57.8 93 0.002 24.6 8.3 22 82-103 96-117 (149)
51 COG1188 Ribosome-associated he 57.8 15 0.00032 27.0 3.3 29 77-106 35-63 (100)
52 PF02699 YajC: Preprotein tran 53.0 33 0.00072 24.1 4.5 8 93-100 38-45 (82)
53 cd00433 Peptidase_M17 Cytosol 52.7 30 0.00065 32.8 5.4 60 69-128 279-353 (468)
54 PRK10680 molybdopterin biosynt 51.7 19 0.00042 33.4 3.9 28 89-116 87-116 (411)
55 cd00887 MoeA MoeA family. Memb 50.2 20 0.00042 33.1 3.7 32 89-121 78-111 (394)
56 PRK11479 hypothetical protein; 45.3 5.1 0.00011 35.0 -0.9 21 85-105 58-78 (274)
57 cd00210 PTS_IIA_glc PTS_IIA, P 44.0 35 0.00077 26.1 3.7 30 118-148 70-99 (124)
58 PRK14715 DNA polymerase II lar 44.0 18 0.00039 38.3 2.6 31 74-104 988-1018(1627)
59 PRK00913 multifunctional amino 44.0 50 0.0011 31.4 5.4 59 70-128 294-367 (483)
60 TIGR01657 P-ATPase-V P-type AT 43.2 2.9E+02 0.0062 29.1 11.3 20 95-114 237-256 (1054)
61 TIGR00074 hypC_hupF hydrogenas 43.2 52 0.0011 22.9 4.1 30 75-104 16-48 (76)
62 PRK04980 hypothetical protein; 42.1 47 0.001 24.5 3.9 48 89-136 29-83 (102)
63 PRK14690 molybdopterin biosynt 41.9 32 0.00069 32.1 3.8 28 89-116 103-132 (419)
64 PRK14898 DNA-directed RNA poly 40.9 31 0.00066 35.3 3.7 35 73-109 168-202 (858)
65 PRK05015 aminopeptidase B; Pro 40.7 74 0.0016 29.7 5.8 56 75-130 236-306 (424)
66 COG1261 FlgA Flagellar basal b 40.1 86 0.0019 26.5 5.7 65 87-153 140-217 (220)
67 cd00081 Hint Hedgehog/Intein d 40.0 44 0.00095 25.0 3.8 29 74-102 72-100 (136)
68 TIGR01652 ATPase-Plipid phosph 38.1 1.9E+02 0.0041 30.4 9.1 22 80-101 105-126 (1057)
69 PRK14491 putative bifunctional 36.4 45 0.00097 32.6 4.0 28 89-116 277-306 (597)
70 PRK14498 putative molybdopteri 36.4 46 0.001 32.7 4.1 28 89-116 95-124 (633)
71 TIGR02988 YaaA_near_RecF S4 do 36.3 46 0.00099 21.5 2.9 23 78-100 36-58 (59)
72 PRK14497 putative molybdopteri 35.8 42 0.00091 32.5 3.6 28 89-116 88-117 (546)
73 PF07591 PT-HINT: Pretoxin HIN 35.5 30 0.00066 26.5 2.2 28 85-112 70-97 (130)
74 PRK10413 hydrogenase 2 accesso 35.1 72 0.0016 22.5 3.8 31 75-105 19-56 (82)
75 COG4013 Uncharacterized protei 34.3 69 0.0015 22.7 3.5 27 90-117 19-45 (91)
76 TIGR00830 PTBA PTS system, glu 34.3 1.1E+02 0.0025 23.2 5.1 43 105-148 39-99 (121)
77 PF12791 RsgI_N: Anti-sigma fa 33.2 68 0.0015 20.4 3.3 33 75-107 7-41 (56)
78 TIGR01522 ATPase-IIA2_Ca golgi 33.1 5.6E+02 0.012 26.4 12.3 76 42-118 89-173 (884)
79 TIGR00739 yajC preprotein tran 33.0 1.8E+02 0.0038 20.5 7.6 20 53-72 17-36 (84)
80 TIGR01517 ATPase-IIB_Ca plasma 32.4 1.2E+02 0.0027 31.3 6.6 46 190-235 894-939 (941)
81 PRK15078 polysaccharide export 32.2 96 0.0021 28.5 5.2 40 74-113 211-264 (379)
82 COG0303 MoeA Molybdopterin bio 31.3 59 0.0013 30.2 3.7 29 88-116 85-115 (404)
83 PF09926 DUF2158: Uncharacteri 30.7 36 0.00077 21.9 1.6 12 93-104 2-13 (53)
84 PRK10409 hydrogenase assembly 30.7 86 0.0019 22.6 3.7 30 75-104 16-54 (90)
85 PF07385 DUF1498: Protein of u 30.6 1E+02 0.0023 26.1 4.7 28 74-106 137-164 (225)
86 COG2501 S4-like RNA binding pr 30.4 73 0.0016 22.0 3.1 27 76-102 37-63 (73)
87 TIGR02219 phage_NlpC_fam putat 30.3 28 0.0006 26.8 1.2 18 85-102 70-87 (134)
88 KOG3416 Predicted nucleic acid 30.3 35 0.00076 26.2 1.7 14 90-103 60-73 (134)
89 TIGR01524 ATPase-IIIB_Mg magne 30.3 3.5E+02 0.0077 27.8 9.4 20 95-114 139-158 (867)
90 COG0522 RpsD Ribosomal protein 30.0 46 0.00099 27.9 2.5 32 76-107 119-150 (205)
91 smart00739 KOW KOW (Kyprides, 29.9 64 0.0014 16.8 2.4 22 92-113 2-23 (28)
92 PRK15175 Vi polysaccharide exp 29.6 97 0.0021 28.3 4.7 29 74-102 198-236 (355)
93 COG0260 PepB Leucyl aminopepti 29.6 51 0.0011 31.4 3.0 60 71-130 294-368 (485)
94 COG2139 RPL21A Ribosomal prote 29.0 1.5E+02 0.0032 21.7 4.6 50 89-162 30-80 (98)
95 PF06820 Phage_fiber_C: Putati 28.1 63 0.0014 21.2 2.3 29 92-121 5-34 (64)
96 KOG0208 Cation transport ATPas 28.1 3.5E+02 0.0075 28.4 8.5 29 88-116 251-279 (1140)
97 PF12148 DUF3590: Protein of u 27.7 24 0.00051 25.2 0.4 22 80-101 54-75 (85)
98 PRK10348 ribosome-associated h 27.2 71 0.0015 24.8 2.9 28 78-106 36-63 (133)
99 smart00532 LIGANc Ligase N fam 26.9 29 0.00062 32.6 0.9 26 88-113 359-386 (441)
100 PF00122 E1-E2_ATPase: E1-E2 A 26.4 3.6E+02 0.0079 22.1 8.8 61 43-103 6-76 (230)
101 PLN03190 aminophospholipid tra 25.7 2.4E+02 0.0053 30.1 7.4 95 4-101 111-211 (1178)
102 CHL00113 rps4 ribosomal protei 25.7 76 0.0016 26.5 3.1 26 77-102 115-140 (201)
103 PRK10838 spr outer membrane li 25.3 48 0.001 27.4 1.8 20 85-104 122-141 (190)
104 TIGR01017 rpsD_bact ribosomal 24.8 70 0.0015 26.5 2.8 27 77-103 116-142 (200)
105 PRK05327 rpsD 30S ribosomal pr 24.8 85 0.0018 26.1 3.2 27 77-103 119-145 (203)
106 PRK06033 hypothetical protein; 24.6 31 0.00067 24.4 0.5 25 86-110 14-38 (83)
107 PRK14701 reverse gyrase; Provi 24.5 66 0.0014 35.5 3.1 34 74-107 960-993 (1638)
108 PRK04132 replication factor C 24.5 73 0.0016 32.6 3.3 28 75-102 135-163 (846)
109 PF01479 S4: S4 domain; Inter 24.3 55 0.0012 19.9 1.6 21 78-98 28-48 (48)
110 COG4043 Preprotein translocase 24.3 72 0.0016 23.5 2.3 25 89-114 31-55 (111)
111 PRK06788 flagellar motor switc 23.6 30 0.00065 26.3 0.3 65 85-165 40-105 (119)
112 PRK08433 flagellar motor switc 23.1 34 0.00075 25.7 0.5 26 85-110 38-63 (111)
113 PRK02290 3-dehydroquinate synt 23.0 76 0.0016 28.7 2.7 28 75-103 300-327 (344)
114 PRK14350 ligA NAD-dependent DN 22.9 38 0.00082 33.6 0.9 26 88-113 361-388 (669)
115 PRK09439 PTS system glucose-sp 22.5 2.5E+02 0.0054 22.7 5.4 54 94-148 47-121 (169)
116 PRK08097 ligB NAD-dependent DN 22.5 50 0.0011 32.1 1.6 26 88-113 356-383 (562)
117 PF07069 PRRSV_2b: Porcine rep 22.4 1.8E+02 0.004 19.2 3.7 26 1-26 13-38 (73)
118 PLN02699 Bifunctional molybdop 22.3 1.4E+02 0.003 29.7 4.7 28 90-117 86-115 (659)
119 PF01052 SpoA: Surface present 22.2 69 0.0015 21.7 1.9 18 141-158 54-72 (77)
120 PF13403 Hint_2: Hint domain 22.0 82 0.0018 24.7 2.5 26 86-111 15-40 (147)
121 PRK07956 ligA NAD-dependent DN 21.9 54 0.0012 32.6 1.7 27 88-114 364-392 (665)
122 PF00877 NLPC_P60: NlpC/P60 fa 21.7 55 0.0012 23.6 1.4 21 82-102 42-62 (105)
123 PTZ00318 NADH dehydrogenase-li 21.0 2.6E+02 0.0057 25.7 6.1 34 75-114 242-275 (424)
124 PRK14351 ligA NAD-dependent DN 20.7 58 0.0013 32.5 1.7 27 87-113 385-413 (689)
125 PRK14010 potassium-transportin 20.6 2.7E+02 0.0058 27.8 6.2 36 80-117 124-159 (673)
126 PF14168 YjzC: YjzC-like prote 20.6 1.5E+02 0.0032 19.5 3.0 28 81-108 16-45 (57)
127 PRK06437 hypothetical protein; 20.5 1.3E+02 0.0029 20.0 3.0 26 74-100 35-60 (67)
128 TIGR02480 fliN flagellar motor 20.4 36 0.00078 23.5 0.2 22 88-109 17-38 (77)
129 PRK15122 magnesium-transportin 20.1 9.1E+02 0.02 25.0 10.1 35 95-129 162-197 (903)
130 PF01959 DHQS: 3-dehydroquinat 20.0 96 0.0021 28.2 2.8 27 75-102 310-336 (354)
No 1
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=331.66 Aligned_cols=238 Identities=24% Similarity=0.274 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE-CCEEEEee
Q 025033 11 TLIILMVCAVLSIGVGLATEGWPEGMYD-GLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR-DGQRQKVS 88 (259)
Q Consensus 11 ~~~l~l~~a~~s~~~~~~~~~~~~~~~~-~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r-~g~~~~i~ 88 (259)
+..++.+++..+++++.+..-++ .||+ +..++++++++.++|.+.+.++++++++|.++.|+ .+++++ ||++++|+
T Consensus 149 md~Lv~la~~~A~~~s~~~~~~~-~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~-~A~~~~~~~~~~~v~ 226 (713)
T COG2217 149 MDTLVALATIGAYAYSLYATLFP-VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPK-TATVVRGDGEEEEVP 226 (713)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-EEEEEecCCcEEEEE
Confidence 45556666666665554422222 4555 55555556677799999999999999999999997 776665 55589999
Q ss_pred CCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccch
Q 025033 89 IYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKL 168 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i 168 (259)
.+|+++||+++|+|||+||+||++++|++ .+|||++||||.|+.|.+||. |++||.|.+|..+++|+++|.+|+++||
T Consensus 227 v~~v~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs~PV~k~~Gd~-V~aGtiN~~G~l~i~vt~~~~dt~la~I 304 (713)
T COG2217 227 VEEVQVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGESLPVEKKPGDE-VFAGTVNLDGSLTIRVTRVGADTTLARI 304 (713)
T ss_pred HHHCCCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCCCCEecCCCCE-EeeeEEECCccEEEEEEecCccCHHHHH
Confidence 99999999999999999999999999999 899999999999999999999 9999999999999999999999999999
Q ss_pred hhhccccccCchhHHHHHH-------HHHHHHHHHHHHHhHhhccCCccHHHHHHHH-HHhhhhhhhhhhhccccCCCCC
Q 025033 169 METLNEGMFDSWLFVGILV-------LTVAFQIIIVEFLGALASTVPLSWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSE 240 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~-~il~ia~P~al~l~~~P~a~~~ 240 (259)
+++++++|.+|++..++.. +.+.+...+.+.++++.. +.+|..|++++ .+|+++|||||+++ +|.+...
T Consensus 305 i~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~--~~~~~~a~~~a~avLVIaCPCALgLA-tP~ai~~ 381 (713)
T COG2217 305 IRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFG--GGDWETALYRALAVLVIACPCALGLA-TPTAILV 381 (713)
T ss_pred HHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHhheeeeCccHHHhH-HHHHHHH
Confidence 9999999999986544443 333332222222222222 24678888887 57999999999999 9998888
Q ss_pred CccccccceeecCCC
Q 025033 241 PKLQHHDGYEEIPSG 255 (259)
Q Consensus 241 ~~~~~~~~~~~~~~~ 255 (259)
+..++++++.++||+
T Consensus 382 g~g~aA~~GILiK~g 396 (713)
T COG2217 382 GIGRAARRGILIKGG 396 (713)
T ss_pred HHHHHHhCceEEeCh
Confidence 877766655555554
No 2
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=3.9e-41 Score=329.36 Aligned_cols=242 Identities=22% Similarity=0.261 Sum_probs=197.0
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
++|++||++|++++++++++++++++ .|.++.+++++++++..+++++++++++.+++|.++.++ +++|+|
T Consensus 28 ~~~~~~~~~~~~~lL~~aa~~s~~~~--------~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~-~~~V~R 98 (755)
T TIGR01647 28 LKFLGFFWNPLSWVMEAAAIIAIALE--------NWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAP-KARVLR 98 (755)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhhc--------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEE
Confidence 36899999999999999999999887 577888888888888999999999999999999888764 899999
Q ss_pred CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeC
Q 025033 81 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVG 160 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg 160 (259)
||++++|+++||+|||+|.+++||+|||||++++|+.+.||||+|||||.|+.|++++. +|+||.|.+|+++++|++||
T Consensus 99 dg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~K~~~~~-v~aGT~v~~G~~~~~V~~tG 177 (755)
T TIGR01647 99 DGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKKTGDI-AYSGSTVKQGEAEAVVTATG 177 (755)
T ss_pred CCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecCceEEEcccccCCccceEeccCCe-eeccCEEEccEEEEEEEEcC
Confidence 99999999999999999999999999999999999866999999999999999999987 99999999999999999999
Q ss_pred ccccccchhhhccccccCchhHHHHHH-------HHHHHHHHHHHHHhHhhccCCccHHHHHHH-HHHhhhhhhhhhhhc
Q 025033 161 MRTEWGKLMETLNEGMFDSWLFVGILV-------LTVAFQIIIVEFLGALASTVPLSWHLWLLC-ILIGAVSMPIAVVIK 232 (259)
Q Consensus 161 ~~t~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~-~~il~ia~P~al~l~ 232 (259)
.+|.+||+.+++++++.+++++...+. .++.+.++++++++.+. ...+|..++.. ..+++++|||+|.+.
T Consensus 178 ~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~vlv~a~P~~Lp~~ 255 (755)
T TIGR01647 178 MNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFFG--RGESFREGLQFALVLLVGGIPIAMPAV 255 (755)
T ss_pred CccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHhCCcchHHH
Confidence 999999999999988877765543332 22222222222222221 12345555544 467899999999999
Q ss_pred cccCCCCCCccc-cccceeecCCC
Q 025033 233 CIPVKKSEPKLQ-HHDGYEEIPSG 255 (259)
Q Consensus 233 ~~P~a~~~~~~~-~~~~~~~~~~~ 255 (259)
+|++...+..+ +++|.+.+++.
T Consensus 256 -~~~~la~g~~r~ak~gilvk~l~ 278 (755)
T TIGR01647 256 -LSVTMAVGAAELAKKKAIVTRLT 278 (755)
T ss_pred -HHHHHHHHHHHHHhCCeEEcccH
Confidence 88765544444 45555555543
No 3
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=1.7e-39 Score=322.86 Aligned_cols=240 Identities=24% Similarity=0.332 Sum_probs=193.8
Q ss_pred ChHHHHh-hHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEE
Q 025033 1 MFVWEAL-QDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVT 79 (259)
Q Consensus 1 ~~~~~~~-~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 79 (259)
++|++|| ++|++++++++++++++++ .|.+++.++++++++..+..++++++++.+++|.++.++ +++|+
T Consensus 52 ~~~l~~~~~~~~~~~L~~aa~ls~~~g--------~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~-~~~Vi 122 (884)
T TIGR01522 52 KKFLSQFVKNPLILLLIASAVISVFMG--------NIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPP-ECHLI 122 (884)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHc--------chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCC-eeEEE
Confidence 3689999 9999999999999999887 577888888878888899999999999999999998775 89999
Q ss_pred ECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCC-------------CEEEecce
Q 025033 80 RDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN-------------PFLLAGTK 146 (259)
Q Consensus 80 r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~-------------~~v~~Gt~ 146 (259)
|||++++|+++||+|||+|.+++||+|||||++++|+.+.||||+|||||.|+.|++++ +++|+||.
T Consensus 123 Rdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~ 202 (884)
T TIGR01522 123 REGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTL 202 (884)
T ss_pred ECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEcccccCCCcceecccccccccccccccccCceEEeCCE
Confidence 99999999999999999999999999999999999976799999999999999999864 47999999
Q ss_pred EecceEEEEEEEeCccccccchhhhccccccCchhHHHHHH-------HHHHHHHHHHHHHhHhhccCCccHHHHHHH-H
Q 025033 147 VQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILV-------LTVAFQIIIVEFLGALASTVPLSWHLWLLC-I 218 (259)
Q Consensus 147 ~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~-~ 218 (259)
|.+|+++++|++||.+|.+||+.+++++++..++++...+. ....+.+.++++++++ ....|...+.. +
T Consensus 203 v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v 279 (884)
T TIGR01522 203 VRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQLSLVSFGVIGVICLVGWF---QGKDWLEMFTISV 279 (884)
T ss_pred EEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHH
Confidence 99999999999999999999999999988877775543322 2222222222233322 12244444443 4
Q ss_pred HHhhhhhhhhhhhccccCCCCCCccc-cccceeecC
Q 025033 219 LIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIP 253 (259)
Q Consensus 219 ~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~ 253 (259)
.+++++|||+|.++ +|++...+..+ +++|.+.++
T Consensus 280 ~llv~aiP~~Lp~~-vt~~l~~~~~r~ak~~ilvk~ 314 (884)
T TIGR01522 280 SLAVAAIPEGLPII-VTVTLALGVLRMSKKRAIVRK 314 (884)
T ss_pred HHHHHHccchHHHH-HHHHHHHHHHHHhhcCCcccc
Confidence 67899999999999 88776555555 334444443
No 4
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=4.2e-39 Score=319.17 Aligned_cols=242 Identities=18% Similarity=0.255 Sum_probs=194.9
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
++|++||++|++++++++++++++.+ .|.+++.++++++++.++++++++++++.+++|.++.++ +++|+|
T Consensus 95 ~~~~~~~~~p~~~lL~~aa~ls~~~~--------~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~-~a~ViR 165 (902)
T PRK10517 95 VHLWVCYRNPFNILLTILGAISYATE--------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSN-TATVLR 165 (902)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEE
Confidence 36899999999999999999999876 578888888888899999999999999999999999875 899999
Q ss_pred C------CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCC------------CEEE
Q 025033 81 D------GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN------------PFLL 142 (259)
Q Consensus 81 ~------g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~------------~~v~ 142 (259)
| |++++|+++||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|++++ |++|
T Consensus 166 ~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vf 245 (902)
T PRK10517 166 VINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCF 245 (902)
T ss_pred CCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCcccccccee
Confidence 9 789999999999999999999999999999999987799999999999999999875 4699
Q ss_pred ecceEecceEEEEEEEeCccccccchhhhccccccCchhHHHHHHH-------HHHHHHHHHHHHhHhhccCCccHHHHH
Q 025033 143 AGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVL-------TVAFQIIIVEFLGALASTVPLSWHLWL 215 (259)
Q Consensus 143 ~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iv~~~~~~~~~~~~~~~~~~ 215 (259)
+||.|.+|+++++|++||.+|.+|||.+++++++..++++...+.. ++.+.++++++++.+. ..+|...+
T Consensus 246 aGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~---~~~~~~~l 322 (902)
T PRK10517 246 MGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYT---KGDWWEAA 322 (902)
T ss_pred eCceEeeeeEEEEEEEeccccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh---cCCHHHHH
Confidence 9999999999999999999999999999999887777766543332 2222222222222221 12344333
Q ss_pred -HHHHHhhhhhhhhhhhccccCCCCCCccc-cccceeecCCC
Q 025033 216 -LCILIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIPSG 255 (259)
Q Consensus 216 -~~~~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~~~ 255 (259)
..+.+++.+|||+|.+. +|++...+..+ +++|.+.++..
T Consensus 323 ~~alsv~V~~~Pe~LP~~-vt~~la~g~~~mak~~ilVk~l~ 363 (902)
T PRK10517 323 LFALSVAVGLTPEMLPMI-VTSTLARGAVKLSKQKVIVKRLD 363 (902)
T ss_pred HHHHHHHHHHcccHHHHH-HHHHHHHHHHHHHhCCcEEecch
Confidence 34467889999999888 77654333222 45566555543
No 5
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=7.6e-39 Score=319.93 Aligned_cols=252 Identities=40% Similarity=0.568 Sum_probs=193.5
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhcc-----CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCce
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLAT-----EGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIF 75 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~-----~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (259)
+++++||++++++++++++++++++++.. .+....|+++++++++++++.++.++++++++++.+++++..++++
T Consensus 88 ~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~ 167 (941)
T TIGR01517 88 QIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQK 167 (941)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 36899999999999999999999987532 2333468899988888888889999999999999999987655568
Q ss_pred EEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCC-CEEEecceEecceEEE
Q 025033 76 IQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN-PFLLAGTKVQDGSVKM 154 (259)
Q Consensus 76 ~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~-~~v~~Gt~~~~g~~~~ 154 (259)
++|+|||++++|+++||+|||+|.+++||+|||||++++|+.+.||||+|||||.|+.|++++ +++|+||.+.+|.+++
T Consensus 168 ~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~ 247 (941)
T TIGR01517 168 IAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRM 247 (941)
T ss_pred eEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEE
Confidence 999999999999999999999999999999999999999965699999999999999999876 5899999999999999
Q ss_pred EEEEeCccccccchhhhccccccCch------hHHHHHHHHHHHHHHHHHHHhH---hhccCC----------ccHHHHH
Q 025033 155 LVTTVGMRTEWGKLMETLNEGMFDSW------LFVGILVLTVAFQIIIVEFLGA---LASTVP----------LSWHLWL 215 (259)
Q Consensus 155 ~V~~tg~~t~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~iv~~~~~---~~~~~~----------~~~~~~~ 215 (259)
+|++||.+|.+||+.+++++++.+++ ++...+..++...++++++++. +....+ ..|...+
T Consensus 248 iV~~tG~~T~~gki~~~~~~~~~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (941)
T TIGR01517 248 LVTAVGVNSFGGKLMMELRAEGEDTPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHF 327 (941)
T ss_pred EEEEeCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHH
Confidence 99999999999999999887654331 2222332222222222222211 111000 1233333
Q ss_pred HH-HHHhhhhhhhhhhhccccCCCCCCccc-cccceeecC
Q 025033 216 LC-ILIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIP 253 (259)
Q Consensus 216 ~~-~~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~ 253 (259)
.. +.+++++|||+|.+. +|++...+..+ +++|.+.++
T Consensus 328 ~~al~llv~~iP~~Lp~~-vti~l~~~~~~mak~~ilvk~ 366 (941)
T TIGR01517 328 IIAVTIVVVAVPEGLPLA-VTIALAYSMKKMMKDNNLVRH 366 (941)
T ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHHHHHHHhCCCEEec
Confidence 33 457899999999999 88776555544 444444444
No 6
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=1.1e-38 Score=315.75 Aligned_cols=241 Identities=22% Similarity=0.270 Sum_probs=192.3
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
++|++||++|++++++++++++++.+ .|+++++++++++++.+++.++++++++..++|.++.++ +++|+|
T Consensus 61 ~~~~~~~~~p~~~iL~~~a~ls~~~~--------~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~-~~~V~R 131 (867)
T TIGR01524 61 RLLIRAFNNPFIYILAMLMGVSYLTD--------DLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKN-TATVLR 131 (867)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh--------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-eeEEEE
Confidence 46899999999999999999999875 578888888888899999999999999999999998775 899999
Q ss_pred ------CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCC------------CEEE
Q 025033 81 ------DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN------------PFLL 142 (259)
Q Consensus 81 ------~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~------------~~v~ 142 (259)
||++++|+++||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|++++ +++|
T Consensus 132 ~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vf 211 (867)
T TIGR01524 132 VINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCF 211 (867)
T ss_pred ecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEecCceEEEcccccCCCCcccccCCcccccccccccccccee
Confidence 9999999999999999999999999999999999987799999999999999999875 4699
Q ss_pred ecceEecceEEEEEEEeCccccccchhhhccccccCchhHH-------HHHHHHHHHHHHHHHHHhHhhccCCccHHHH-
Q 025033 143 AGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFV-------GILVLTVAFQIIIVEFLGALASTVPLSWHLW- 214 (259)
Q Consensus 143 ~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~- 214 (259)
+||.+.+|+++++|++||.+|.+||+.+.+++ ...++++. ..+..+..+.++++++++.+. ..+|...
T Consensus 212 aGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~-~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~ 287 (867)
T TIGR01524 212 MGTNVLSGHAQAVVLATGSSTWFGSLAIAATE-RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLM---KGDWLEAF 287 (867)
T ss_pred cCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHh---cCCHHHHH
Confidence 99999999999999999999999999999988 44455433 222222222222222222211 2244433
Q ss_pred HHHHHHhhhhhhhhhhhccccCCCCCCccc-cccceeecCCC
Q 025033 215 LLCILIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIPSG 255 (259)
Q Consensus 215 ~~~~~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~~~ 255 (259)
...+.+++.+|||+|.+. +|++...+..+ +++|++.++..
T Consensus 288 ~~al~l~v~~iP~~Lp~~-vt~~la~g~~~mak~~ilvk~l~ 328 (867)
T TIGR01524 288 LFALAVAVGLTPEMLPMI-VSSNLAKGAINMSKKKVIVKELS 328 (867)
T ss_pred HHHHHHHHHhCcchHHHH-HHHHHHHHHHHHHhCCcEEccch
Confidence 344467899999999988 78765444333 45555555543
No 7
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=1.3e-38 Score=310.90 Aligned_cols=231 Identities=20% Similarity=0.284 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECCEEEEeeCC
Q 025033 11 TLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIY 90 (259)
Q Consensus 11 ~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~i~~~ 90 (259)
+..++.++++.+++++ .|.++..++++++++.+++.+++.++++.+++|.++.|+ .++++|||++++|+.+
T Consensus 189 ~~~L~~~a~~~a~~~~--------~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~-~a~vir~g~~~~v~~~ 259 (741)
T PRK11033 189 IETLMSVAAIGALFIG--------ATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPE-TATRLRDGEREEVAIA 259 (741)
T ss_pred ccHHHHHHHHHHHHHc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEECCEEEEEEHH
Confidence 3445555555555443 466777777778888899999999999999999999886 8999999999999999
Q ss_pred CccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhh
Q 025033 91 DLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLME 170 (259)
Q Consensus 91 ~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~ 170 (259)
+|+|||+|++++||+||+||++++|+. .+|||+|||||.|+.|++||. ||+||.|.+|.++++|+++|.+|.++||.+
T Consensus 260 ~l~~GDiv~v~~G~~IP~Dg~vi~g~~-~vdes~lTGEs~Pv~k~~Gd~-V~aGt~~~~G~~~i~V~~~g~~s~l~~I~~ 337 (741)
T PRK11033 260 DLRPGDVIEVAAGGRLPADGKLLSPFA-SFDESALTGESIPVERATGEK-VPAGATSVDRLVTLEVLSEPGASAIDRILH 337 (741)
T ss_pred HCCCCCEEEECCCCEEecceEEEECcE-EeecccccCCCCCEecCCCCe-eccCCEEcCceEEEEEEeccccCHHHHHHH
Confidence 999999999999999999999999997 899999999999999999998 999999999999999999999999999999
Q ss_pred hccccccCchhHHH-------HHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHH-HHhhhhhhhhhhhccccCCCCCCc
Q 025033 171 TLNEGMFDSWLFVG-------ILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSEPK 242 (259)
Q Consensus 171 ~~~~~~~~~~~~~~-------~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~-~il~ia~P~al~l~~~P~a~~~~~ 242 (259)
++++++.+|+++.+ ++...+....+++++++.+. ....|..|+++. .+++++|||||+++ +|++.....
T Consensus 338 lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~--~~~~~~~~i~~a~svlviacPcaL~la-tP~a~~~~l 414 (741)
T PRK11033 338 LIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLL--FAAPWQEWIYRGLTLLLIGCPCALVIS-TPAAITSGL 414 (741)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHhchhhhhhh-hHHHHHHHH
Confidence 99999888875443 33333333333333333222 223577777776 57999999999999 998876555
Q ss_pred cc-cccceeecCCC
Q 025033 243 LQ-HHDGYEEIPSG 255 (259)
Q Consensus 243 ~~-~~~~~~~~~~~ 255 (259)
.. +++|++++++.
T Consensus 415 ~~aar~gilik~~~ 428 (741)
T PRK11033 415 AAAARRGALIKGGA 428 (741)
T ss_pred HHHHHCCeEEcCcH
Confidence 55 45555555543
No 8
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=4.3e-38 Score=301.46 Aligned_cols=247 Identities=17% Similarity=0.156 Sum_probs=190.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEE
Q 025033 5 EALQDLTLIILMVCAVLSIGVGLATE------GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQV 78 (259)
Q Consensus 5 ~~~~~~~~~l~l~~a~~s~~~~~~~~------~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 78 (259)
.||+||+.+++++++++++++++... .+...|..+..+++.++++.+++.+++++.++..++|.++.++.++++
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v 108 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK 108 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 68999999999999999999875431 222445556666666778889999999999999999999987667999
Q ss_pred EECCE-EEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCC--EEEecceEecceEEEE
Q 025033 79 TRDGQ-RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENP--FLLAGTKVQDGSVKML 155 (259)
Q Consensus 79 ~r~g~-~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~--~v~~Gt~~~~g~~~~~ 155 (259)
+|||+ +++|+++||++||++.+++||+||+||++++|+. .+|||++||||.|+.|++|+. .+|+||.|.+|+++++
T Consensus 109 ir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG~a-~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~ 187 (679)
T PRK01122 109 LREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGVA-SVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIR 187 (679)
T ss_pred EECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEccE-EEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEE
Confidence 99988 8999999999999999999999999999999987 899999999999999998753 4999999999999999
Q ss_pred EEEeCccccccchhhhccccccCchhHHHHHHHHHHHHH-------HHHHHHhHhhccCCccHHHHHHHHHHhhhhhhhh
Q 025033 156 VTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQI-------IIVEFLGALASTVPLSWHLWLLCILIGAVSMPIA 228 (259)
Q Consensus 156 V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~iv~~~~~~~~~~~~~~~~~~~~~~il~ia~P~a 228 (259)
|+++|.+|+++|+++++++++.+|++.......+...+. +.+.++.+ +. ...+ .....+.+++++|||+
T Consensus 188 Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~~l~~i~l~~~~~~~~~~~-~~--g~~~-~l~~~iallV~aiP~a 263 (679)
T PRK01122 188 ITANPGESFLDRMIALVEGAKRQKTPNEIALTILLAGLTIIFLLVVATLPPFAA-YS--GGAL-SITVLVALLVCLIPTT 263 (679)
T ss_pred EEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-Hh--CchH-HHHHHHHHHHHcccch
Confidence 999999999999999999998888876433222111111 11111111 11 1122 2233345789999999
Q ss_pred hhhccccCCCCCCccc-cccceeecCCCCC
Q 025033 229 VVIKCIPVKKSEPKLQ-HHDGYEEIPSGPE 257 (259)
Q Consensus 229 l~l~~~P~a~~~~~~~-~~~~~~~~~~~~~ 257 (259)
++.. +|+....+..+ +++|.+.+++.+.
T Consensus 264 lg~l-~~~i~i~g~~r~ak~gvLvk~~~av 292 (679)
T PRK01122 264 IGGL-LSAIGIAGMDRVLQANVIATSGRAV 292 (679)
T ss_pred hhhH-HHHHHHHHHHHHhcCCeeecCchHH
Confidence 9888 77654433333 6666666666543
No 9
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-39 Score=305.39 Aligned_cols=221 Identities=19% Similarity=0.283 Sum_probs=181.2
Q ss_pred CCCcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECCE-EEEeeCCCccCCcEEEEcCCCEEecc
Q 025033 32 WPEGMYDGLGIILSI-LLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ-RQKVSIYDLVVGDIVHLSIGDQVPAD 109 (259)
Q Consensus 32 ~~~~~~~~~~i~~~i-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~-~~~i~~~~lv~GDii~v~~G~~iP~D 109 (259)
.+..|||+..|++.+ .+..++|..++.++...+.+|.++.|. ++.++.||+ +++|+.+.+++||++.|.||++||+|
T Consensus 336 ~~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~-~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvD 414 (951)
T KOG0207|consen 336 SPPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPS-KATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVD 414 (951)
T ss_pred CcchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcc-cceEeecCCcceEeeeeeeccCCEEEECCCCccccc
Confidence 367888877777765 456699999999999999999999986 888999986 89999999999999999999999999
Q ss_pred EEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchhHHH-----
Q 025033 110 GIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVG----- 184 (259)
Q Consensus 110 ~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~----- 184 (259)
|++++|++ +||||++|||++||.|++|+. |.+||+|.+|....++|+.|.||.++||+++++++|.+|++.++
T Consensus 415 G~Vv~Gss-~VDEs~iTGEs~PV~Kk~gs~-ViaGsiN~nG~l~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDki 492 (951)
T KOG0207|consen 415 GVVVDGSS-EVDESLITGESMPVPKKKGST-VIAGSINLNGTLLVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKI 492 (951)
T ss_pred cEEEeCce-eechhhccCCceecccCCCCe-eeeeeecCCceEEEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHh
Confidence 99999998 999999999999999999998 99999999999999999999999999999999999999974332
Q ss_pred --HHHHHHHHH----HHHHHHHhHhhccCC----ccHHHHHHHH-HHhhhhhhhhhhhccccCCCCCCccccccceeecC
Q 025033 185 --ILVLTVAFQ----IIIVEFLGALASTVP----LSWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSEPKLQHHDGYEEIP 253 (259)
Q Consensus 185 --~~~~~~~~~----~~iv~~~~~~~~~~~----~~~~~~~~~~-~il~ia~P~al~l~~~P~a~~~~~~~~~~~~~~~~ 253 (259)
++.+.+.++ ++++.+++......+ ..+..|++.. .++++||||||+++ +|.|++.+....++++.+++
T Consensus 493 a~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~~~~~~a~~~aisVlviACPCaLgLA-TPtAvmvatgvgA~nGvLIK 571 (951)
T KOG0207|consen 493 AGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFFDAFSHAFQLAISVLVIACPCALGLA-TPTAVMVATGVGATNGVLIK 571 (951)
T ss_pred hhcCCchhhHHHHHHHHHHHHHccccccCcchhhHHHHHHHHhhheEEEEECchhhhcC-CceEEEEEechhhhcceEEc
Confidence 233333333 333333333233333 2345566665 47999999999999 99998887777666666666
Q ss_pred CCC
Q 025033 254 SGP 256 (259)
Q Consensus 254 ~~~ 256 (259)
|+.
T Consensus 572 Gge 574 (951)
T KOG0207|consen 572 GGE 574 (951)
T ss_pred CcH
Confidence 653
No 10
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=1.1e-37 Score=309.30 Aligned_cols=249 Identities=21% Similarity=0.294 Sum_probs=194.0
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccC---CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATE---GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQ 77 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~---~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 77 (259)
++|++||++|+.++++++++++++.+++.. +...+|.++++++++++++.++++++++++++..++|.++.++ .++
T Consensus 73 ~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~-~~~ 151 (903)
T PRK15122 73 VQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRT-TAT 151 (903)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ceE
Confidence 368999999999999999999999865421 2234688999999999999999999999999999999998875 899
Q ss_pred EEECC------EEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecC--C------------
Q 025033 78 VTRDG------QRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD--E------------ 137 (259)
Q Consensus 78 v~r~g------~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~--~------------ 137 (259)
|+||| ++++|+++||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|++ +
T Consensus 152 V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~ 231 (903)
T PRK15122 152 VLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALAD 231 (903)
T ss_pred EEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcCceEEEccccCCCCcceeeecccccccccccccccc
Confidence 99994 799999999999999999999999999999999888899999999999999985 1
Q ss_pred --------CCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchh-------HHHHHHHHHHHHHHHHHHHhH
Q 025033 138 --------NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWL-------FVGILVLTVAFQIIIVEFLGA 202 (259)
Q Consensus 138 --------~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~iv~~~~~ 202 (259)
++++|+||.|.+|+++++|++||.+|.+|||.+++++. ..+++ +...+..+...+++++.+++.
T Consensus 232 ~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~-~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~ 310 (903)
T PRK15122 232 DEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGT-RAQTAFDRGVNSVSWLLIRFMLVMVPVVLLING 310 (903)
T ss_pred ccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 25799999999999999999999999999999999873 33333 223333333333333333332
Q ss_pred hhccCCccHHHHHH-HHHHhhhhhhhhhhhccccCCCCCCccc-cccceeecCCC
Q 025033 203 LASTVPLSWHLWLL-CILIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIPSG 255 (259)
Q Consensus 203 ~~~~~~~~~~~~~~-~~~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~~~ 255 (259)
+. ..+|...+. .+.+++.+|||+|.+. +|++...+..+ +++|.+.++..
T Consensus 311 ~~---~~~~~~~l~~aisl~V~~~Pe~Lp~~-vt~~La~g~~~mak~~ilVk~l~ 361 (903)
T PRK15122 311 FT---KGDWLEALLFALAVAVGLTPEMLPMI-VSSNLAKGAIAMARRKVVVKRLN 361 (903)
T ss_pred hc---cCCHHHHHHHHHHHHHHHccchHHHH-HHHHHHHHHHHHHHcCCeecccc
Confidence 21 224554443 3467899999999998 77765433333 44555555543
No 11
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=5.1e-38 Score=298.80 Aligned_cols=237 Identities=19% Similarity=0.259 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHhhc---cC-----CCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEEC
Q 025033 11 TLIILMVCAVLSIGVGLA---TE-----GWPEGMYDGLGIILS-ILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD 81 (259)
Q Consensus 11 ~~~l~l~~a~~s~~~~~~---~~-----~~~~~~~~~~~i~~~-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 81 (259)
+..+..++...+++++.+ .+ +....||++..++++ ++++.+++...+.++++.+++|.+..|+ +++++|+
T Consensus 20 md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~-~a~~~~~ 98 (562)
T TIGR01511 20 MDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPS-TATLLTK 98 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 345555555555554332 11 112357776666554 4556699999999999999999998886 7888875
Q ss_pred -CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeC
Q 025033 82 -GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVG 160 (259)
Q Consensus 82 -g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg 160 (259)
|++++|+.++|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|++||. ||+||.|.+|.++++|+++|
T Consensus 99 ~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~-~vdes~lTGEs~pv~k~~gd~-V~aGt~~~~g~~~~~v~~~g 176 (562)
T TIGR01511 99 DGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPKKVGDP-VIAGTVNGTGSLVVRATATG 176 (562)
T ss_pred CCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECce-EEehHhhcCCCCcEEcCCCCE-EEeeeEECCceEEEEEEEec
Confidence 667999999999999999999999999999999998 899999999999999999998 99999999999999999999
Q ss_pred ccccccchhhhccccccCchhHHHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHH-HHHhhhhhhhhhhhccccCCCC
Q 025033 161 MRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLC-ILIGAVSMPIAVVIKCIPVKKS 239 (259)
Q Consensus 161 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~-~~il~ia~P~al~l~~~P~a~~ 239 (259)
.+|.++|+.+++++++.+|++.......+...++.++.+++.+... .|..++++ ..+++++|||||.++ +|++..
T Consensus 177 ~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~---~~~~~~~~~~svlvvacPcaL~la-~p~a~~ 252 (562)
T TIGR01511 177 EDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFV---IWLFALEFAVTVLIIACPCALGLA-TPTVIA 252 (562)
T ss_pred CCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhhH-HHHHHH
Confidence 9999999999999998888765544443333322222222211111 12234444 468999999999999 999887
Q ss_pred CCcccccc-ceeecCC
Q 025033 240 EPKLQHHD-GYEEIPS 254 (259)
Q Consensus 240 ~~~~~~~~-~~~~~~~ 254 (259)
.+..+.++ |++++++
T Consensus 253 ~~~~~aa~~gIlik~~ 268 (562)
T TIGR01511 253 VATGLAAKNGVLIKDG 268 (562)
T ss_pred HHHHHHHHCCeEEcCh
Confidence 77666444 4454444
No 12
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=2.6e-37 Score=295.57 Aligned_cols=250 Identities=17% Similarity=0.162 Sum_probs=186.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhcc---C--CCCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceE
Q 025033 5 EALQDLTLIILMVCAVLSIGVGLAT---E--GWPEGMYDG---LGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFI 76 (259)
Q Consensus 5 ~~~~~~~~~l~l~~a~~s~~~~~~~---~--~~~~~~~~~---~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (259)
.||+||+.+++++++++++++++.. . ++...|++. .++++.++++.+++.++++++++++++|.+..++..+
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a 107 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFA 107 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence 5899999999999999999987642 1 111346664 4444456778899999999999999999999876568
Q ss_pred EEEE-CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCC--EEEecceEecceEE
Q 025033 77 QVTR-DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENP--FLLAGTKVQDGSVK 153 (259)
Q Consensus 77 ~v~r-~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~--~v~~Gt~~~~g~~~ 153 (259)
+++| ||++++|++++|++||++.+++||+||+||++++|+. .||||++||||.|+.|++|+. .+|+||.|.+|.++
T Consensus 108 ~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~ 186 (675)
T TIGR01497 108 KLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGVA-SVDESAITGESAPVIKESGGDFASVTGGTRILSDWLV 186 (675)
T ss_pred EEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEccE-EEEcccccCCCCceeecCCCCcceeecCcEEEeeEEE
Confidence 8885 8999999999999999999999999999999999986 899999999999999999874 39999999999999
Q ss_pred EEEEEeCccccccchhhhccccccCchhHHHHHHHHHHHHHHHHH---HHhHhhccCCccHHHHHHHHHHhhhhhhhhhh
Q 025033 154 MLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVE---FLGALASTVPLSWHLWLLCILIGAVSMPIAVV 230 (259)
Q Consensus 154 ~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~---~~~~~~~~~~~~~~~~~~~~~il~ia~P~al~ 230 (259)
++|+++|.+|+++|+++++++++.+|++.......+...+.++.. +..+....+..........+.+++++|||+++
T Consensus 187 i~Vt~~g~~S~lgri~~lve~a~~~ktplq~~l~~l~~~l~~v~li~~~~~~~~~~~~~~~~~~~~lvallV~aiP~aLg 266 (675)
T TIGR01497 187 VECTANPGETFLDRMIALVEGAQRRKTPNEIALTILLIALTLVFLLVTATLWPFAAYGGNAISVTVLVALLVCLIPTTIG 266 (675)
T ss_pred EEEEEecccCHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHhCchhhh
Confidence 999999999999999999999998888765433322222111111 11111100110111122234568999999987
Q ss_pred hccccCCCC-CCccccccceeecCCCC
Q 025033 231 IKCIPVKKS-EPKLQHHDGYEEIPSGP 256 (259)
Q Consensus 231 l~~~P~a~~-~~~~~~~~~~~~~~~~~ 256 (259)
.. +|+... +....+++|.+.+++.+
T Consensus 267 ~l-~~av~iag~~r~ar~gvLvK~~~a 292 (675)
T TIGR01497 267 GL-LSAIGIAGMDRVLGFNVIATSGRA 292 (675)
T ss_pred hH-HHHHHHHHHHHHHHCCeEeeCcHH
Confidence 66 554332 22333666666666654
No 13
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=1.2e-37 Score=310.35 Aligned_cols=249 Identities=24% Similarity=0.305 Sum_probs=191.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 3 VWEALQDLTLIILMVCAVLSIGVGLATEGW--PEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 3 ~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
+++||++|+++++++++++|+++++...+. ..+|+++.+++++++++..+..++++++++.+++|.+..++ +++|+|
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~-~~~ViR 79 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESE-HAKVLR 79 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ceEEEE
Confidence 589999999999999999999998654322 24688999999999999999999999999999999987664 899999
Q ss_pred CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCC------------CCEEEecceEe
Q 025033 81 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE------------NPFLLAGTKVQ 148 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~------------~~~v~~Gt~~~ 148 (259)
||++++++++||+|||+|.+++||++||||++++|+.+.||||+|||||.|+.|.++ ++++|+||.+.
T Consensus 80 dg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~ 159 (917)
T TIGR01116 80 DGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVV 159 (917)
T ss_pred CCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEe
Confidence 999999999999999999999999999999999998779999999999999999875 26799999999
Q ss_pred cceEEEEEEEeCccccccchhhhccccccCchhHHHH-------HHHHHHHHHHHHHHHhHhh-ccC--CccH-HHHH--
Q 025033 149 DGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGI-------LVLTVAFQIIIVEFLGALA-STV--PLSW-HLWL-- 215 (259)
Q Consensus 149 ~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~iv~~~~~~~-~~~--~~~~-~~~~-- 215 (259)
+|+++++|++||.+|.+||+.+.+++.+.+++++... +..+..+.+++++++.... ... ...| ..+.
T Consensus 160 ~G~~~~~V~~tG~~T~~gki~~~~~~~~~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (917)
T TIGR01116 160 AGKARGVVVRTGMSTEIGKIRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAIYY 239 (917)
T ss_pred cceEEEEEEEeCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 9999999999999999999999998877766654322 2222222222222222111 000 1112 1122
Q ss_pred --HHHHHhhhhhhhhhhhccccCCCCCCccc-cccceeecC
Q 025033 216 --LCILIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIP 253 (259)
Q Consensus 216 --~~~~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~ 253 (259)
....+++.+|||+|.+. ++++...+..+ ++++.+.++
T Consensus 240 ~~~~i~l~v~~iP~~Lp~~-vti~l~~~~~~m~~~~ilvk~ 279 (917)
T TIGR01116 240 FKIAVALAVAAIPEGLPAV-ITTCLALGTRKMAKKNAIVRK 279 (917)
T ss_pred HHHHHhhhhhccccccHHH-HHHHHHHHHHHHHHCCcEecC
Confidence 12346788899999998 77655444444 334444443
No 14
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=1.3e-37 Score=308.27 Aligned_cols=215 Identities=21% Similarity=0.223 Sum_probs=169.8
Q ss_pred cchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEE
Q 025033 35 GMYDGLG-IILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFI 113 (259)
Q Consensus 35 ~~~~~~~-i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl 113 (259)
.||++.. +++++.++.++|...+.++++.+++|.++.|+ .++++|||++++|+.++|+|||+|+|++||+||+||+++
T Consensus 284 ~~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~-~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~ 362 (834)
T PRK10671 284 LYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPP-TARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEIT 362 (834)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-EEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEE
Confidence 4777544 44556677799999999999999999999885 899999999999999999999999999999999999999
Q ss_pred ecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchhHHHH-------H
Q 025033 114 SGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGI-------L 186 (259)
Q Consensus 114 ~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~-------~ 186 (259)
+|++ .||||+|||||.|+.|++||. ||+||.|.+|.++++|+++|.+|+++|+.+++++++.+|++..+. +
T Consensus 363 ~g~~-~vdeS~lTGEs~pv~k~~gd~-V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~ 440 (834)
T PRK10671 363 QGEA-WLDEAMLTGEPIPQQKGEGDS-VHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVF 440 (834)
T ss_pred EceE-EEeehhhcCCCCCEecCCCCE-EEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 9987 899999999999999999998 999999999999999999999999999999999988877654333 2
Q ss_pred HHHHHHHHHHHHHHhHhhccCCccHHHHH-HHHHHhhhhhhhhhhhccccCCCCCCccccccceeecCC
Q 025033 187 VLTVAFQIIIVEFLGALASTVPLSWHLWL-LCILIGAVSMPIAVVIKCIPVKKSEPKLQHHDGYEEIPS 254 (259)
Q Consensus 187 ~~~~~~~~~iv~~~~~~~~~~~~~~~~~~-~~~~il~ia~P~al~l~~~P~a~~~~~~~~~~~~~~~~~ 254 (259)
+..+.++.++.++++. ....+..|...+ ..+.+++++|||||+++ +|++...+..+.++++.+.++
T Consensus 441 v~~v~~~a~~~~~~~~-~~~~~~~~~~~~~~a~~vlv~acPcaL~la-~p~a~~~~~~~~a~~gilvk~ 507 (834)
T PRK10671 441 VPVVVVIALVSAAIWY-FFGPAPQIVYTLVIATTVLIIACPCALGLA-TPMSIISGVGRAAEFGVLVRD 507 (834)
T ss_pred HHHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHhcccchhhh-HHHHHHHHHHHHHHCCeEEec
Confidence 2222222222222222 222121233232 34468999999999999 999887776665544444444
No 15
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=2.9e-37 Score=292.44 Aligned_cols=226 Identities=22% Similarity=0.350 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECCEEEEeeCCCc
Q 025033 13 IILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDL 92 (259)
Q Consensus 13 ~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~i~~~~l 92 (259)
.++.++++++++++ .|+++..++++++++.+++.++++++++.++++.+..++ .++|+|||+++++++++|
T Consensus 3 ~l~~~a~~~~~~~~--------~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~-~~~v~r~g~~~~i~~~~l 73 (536)
T TIGR01512 3 LLMALAALGAVAIG--------EYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPD-TARVLRGGSLEEVAVEEL 73 (536)
T ss_pred HHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEECCEEEEEEHHHC
Confidence 45666777777665 478888888888888999999999999999999998875 899999999999999999
Q ss_pred cCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhc
Q 025033 93 VVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL 172 (259)
Q Consensus 93 v~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~ 172 (259)
+|||++.+++||++||||++++|+. .||||+|||||.|+.|++|+. +|+||.+.+|+++++|++||.+|.+||+.+++
T Consensus 74 ~~GDiv~v~~G~~iP~Dg~ii~g~~-~vdes~lTGEs~pv~k~~g~~-v~aGt~v~~G~~~~~V~~~g~~t~~~~i~~~~ 151 (536)
T TIGR01512 74 KVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKAPGDE-VFAGAINLDGVLTIVVTKLPADSTIAKIVNLV 151 (536)
T ss_pred CCCCEEEEcCCCEeecceEEEeCcE-EEEecccCCCCCcEEeCCCCE-EEeeeEECCceEEEEEEEeccccHHHHHHHHH
Confidence 9999999999999999999999997 899999999999999999998 99999999999999999999999999999999
Q ss_pred cccccCchhHH-------HHHHHHHHHHHHHHHHHhHhhccCCccHHHHHH-HHHHhhhhhhhhhhhccccCCCCCCccc
Q 025033 173 NEGMFDSWLFV-------GILVLTVAFQIIIVEFLGALASTVPLSWHLWLL-CILIGAVSMPIAVVIKCIPVKKSEPKLQ 244 (259)
Q Consensus 173 ~~~~~~~~~~~-------~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~-~~~il~ia~P~al~l~~~P~a~~~~~~~ 244 (259)
++++.+++++. ..+...+....++.++.+.+.. .+..++. ...+++++|||||.++ +|++...+..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~svlv~~~P~aL~la-~~~~~~~~~~~ 226 (536)
T TIGR01512 152 EEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK----RWPFWVYRALVLLVVASPCALVIS-APAAYLSAISA 226 (536)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHhhcCccccccc-hHHHHHHHHHH
Confidence 98877776443 3333333333333333332221 1222444 3467999999999999 99887666666
Q ss_pred -cccceeecCC
Q 025033 245 -HHDGYEEIPS 254 (259)
Q Consensus 245 -~~~~~~~~~~ 254 (259)
+++|++.++.
T Consensus 227 ~~k~gilik~~ 237 (536)
T TIGR01512 227 AARHGILIKGG 237 (536)
T ss_pred HHHCCeEEcCc
Confidence 4445555444
No 16
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=6.5e-37 Score=307.19 Aligned_cols=249 Identities=20% Similarity=0.212 Sum_probs=193.5
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccC-----CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCce
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATE-----GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIF 75 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~-----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (259)
++|++||++|++++++++++++++.+.... .....|++++.++++++++..+..++++++++.++++.++.+. +
T Consensus 64 ~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~-~ 142 (997)
T TIGR01106 64 VKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ-Q 142 (997)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-e
Confidence 368999999999999999999887654321 1123578888888888888899999999999999999988774 8
Q ss_pred EEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCC---------CEEEecce
Q 025033 76 IQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN---------PFLLAGTK 146 (259)
Q Consensus 76 ~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~---------~~v~~Gt~ 146 (259)
++|+|||++++|+++||+|||+|.+++||++||||++++|+++.||||+|||||.|+.|++++ |++|+||.
T Consensus 143 ~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~ 222 (997)
T TIGR01106 143 ALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTN 222 (997)
T ss_pred eEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccE
Confidence 999999999999999999999999999999999999999987799999999999999998864 47999999
Q ss_pred EecceEEEEEEEeCccccccchhhhccccccCchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHH-HH
Q 025033 147 VQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWHLWLL-CI 218 (259)
Q Consensus 147 ~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~-~~ 218 (259)
+.+|.+.++|++||.+|.+||+.+++++.+..++++ ...+..++.+..+++++++.+. ...|...+. ..
T Consensus 223 v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i 299 (997)
T TIGR01106 223 CVEGTARGIVVNTGDRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLIL---GYTWLEAVIFLI 299 (997)
T ss_pred eeeeeEEEEEEEccccchhhHHHhhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 999999999999999999999999988776665543 3333333322222222222221 224444433 34
Q ss_pred HHhhhhhhhhhhhccccCCCCCCccc-cccceeecCC
Q 025033 219 LIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIPS 254 (259)
Q Consensus 219 ~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~~ 254 (259)
.+++++|||+|.+. +|++......+ +++|.+.++.
T Consensus 300 ~v~v~~iP~~L~~~-v~i~l~~~~~~m~~~~ilvk~~ 335 (997)
T TIGR01106 300 GIIVANVPEGLLAT-VTVCLTLTAKRMARKNCLVKNL 335 (997)
T ss_pred HHHhhcCCccchHH-HHHHHHHHHHHHHHCCcEecCc
Confidence 56888899999888 77765544433 4445555443
No 17
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=7.3e-37 Score=292.73 Aligned_cols=247 Identities=16% Similarity=0.227 Sum_probs=178.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccC-----CCCCcchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhchhCCce
Q 025033 5 EALQDLTLIILMVCAVLSIGVGLATE-----GWPEGMYDGLGIILS----ILLVVMVTAISDYKQSLQFRDLDREKKKIF 75 (259)
Q Consensus 5 ~~~~~~~~~l~l~~a~~s~~~~~~~~-----~~~~~~~~~~~i~~~----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (259)
.+++||+.++++++++++++++.+.. +|+ .+++..+.++ .+++.+.|.+++++++++.++|+++.++.+
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~ 105 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPDLFHQESVS--RLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMK 105 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhhhccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence 57899999999999999998876532 111 1223333333 334456666778899999999999887545
Q ss_pred EE-EEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCC---CCEEEecceEecce
Q 025033 76 IQ-VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE---NPFLLAGTKVQDGS 151 (259)
Q Consensus 76 ~~-v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~---~~~v~~Gt~~~~g~ 151 (259)
++ +.|||++++|++++|+|||++.+++||+||+||++++|++ .+|||+|||||.|+.|++| ++ +|+||.|.+|+
T Consensus 106 a~~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~~g~d~~~-V~aGT~v~~G~ 183 (673)
T PRK14010 106 ARRIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKESGGDFDN-VIGGTSVASDW 183 (673)
T ss_pred EEEEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce-EEecchhcCCCCceeccCCCccCe-eecCceeecce
Confidence 65 7799999999999999999999999999999999999987 8999999999999999998 88 99999999999
Q ss_pred EEEEEEEeCccccccchhhhccccccCchhHHHHHHHHHHHHHHHH-HHHhHhhcc-CCccHHH-HHHHHHHhhhhhhhh
Q 025033 152 VKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIV-EFLGALAST-VPLSWHL-WLLCILIGAVSMPIA 228 (259)
Q Consensus 152 ~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iv-~~~~~~~~~-~~~~~~~-~~~~~~il~ia~P~a 228 (259)
++++|+++|.+|++||+++++++++.+|++............+++. .++.++... ....+.. ......+.+.+|||+
T Consensus 184 ~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~~l~ii~l~~~~~~~~~~~~~~~~~~~~~~val~V~~IP~a 263 (673)
T PRK14010 184 LEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLMTLTIIFLVVILTMYPLAKFLNFNLSIAMLIALAVCLIPTT 263 (673)
T ss_pred EEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999888865433222211111111 111111000 0001111 122234456678999
Q ss_pred hhhccccCCCCCCccc-cccceeecCCCC
Q 025033 229 VVIKCIPVKKSEPKLQ-HHDGYEEIPSGP 256 (259)
Q Consensus 229 l~l~~~P~a~~~~~~~-~~~~~~~~~~~~ 256 (259)
+... +|++...+..+ +++|.+.+++.+
T Consensus 264 L~~~-~~~~~~~g~~r~ak~gvLvk~~~a 291 (673)
T PRK14010 264 IGGL-LSAIGIAGMDRVTQFNILAKSGRS 291 (673)
T ss_pred HHHH-HHHHHHHHHHHHhhCCEEEeCcHH
Confidence 9987 77654333333 566666666654
No 18
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=2.3e-36 Score=303.42 Aligned_cols=166 Identities=24% Similarity=0.368 Sum_probs=155.0
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
++|++||++|+.++++++++++++.+ .|.++++++++++++..+.+++|+++++.+++|+++.++ +++|+|
T Consensus 54 ~~~l~q~~~~~~~iL~~aails~~~~--------~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~-~~~ViR 124 (1053)
T TIGR01523 54 AMLLHQVCNAMCMVLIIAAAISFAMH--------DWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASP-MAHVIR 124 (1053)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHh--------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ceEEEe
Confidence 36899999999999999999999886 588999999999999999999999999999999998764 899999
Q ss_pred CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCC--------------CCEEEecce
Q 025033 81 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE--------------NPFLLAGTK 146 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~--------------~~~v~~Gt~ 146 (259)
||++++|+++||||||+|.+++||+|||||++++++.+.||||+|||||.|+.|.+. .|++|+||.
T Consensus 125 dg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~ 204 (1053)
T TIGR01523 125 NGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSA 204 (1053)
T ss_pred CCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCce
Confidence 999999999999999999999999999999999998899999999999999999742 257999999
Q ss_pred EecceEEEEEEEeCccccccchhhhcccc
Q 025033 147 VQDGSVKMLVTTVGMRTEWGKLMETLNEG 175 (259)
Q Consensus 147 ~~~g~~~~~V~~tg~~t~~~~i~~~~~~~ 175 (259)
+.+|+++++|++||.+|.+|||.+++.+.
T Consensus 205 V~~G~g~~vVvatG~~T~~GkIa~~~~~~ 233 (1053)
T TIGR01523 205 VTKGRAKGICIATALNSEIGAIAAGLQGD 233 (1053)
T ss_pred EEeeeEEEEEEEecCccHHHHHHHHHhhh
Confidence 99999999999999999999999988643
No 19
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=1.2e-35 Score=282.73 Aligned_cols=226 Identities=21% Similarity=0.264 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECC-EEEEeeCCC
Q 025033 13 IILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDG-QRQKVSIYD 91 (259)
Q Consensus 13 ~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g-~~~~i~~~~ 91 (259)
.++.+++.++++.+ .|.++..++++++++.+++..+++++++.++++.+..++ .++++||| +++++++++
T Consensus 3 ~l~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~-~~~v~r~~g~~~~i~~~~ 73 (556)
T TIGR01525 3 LLMALATIAAYAMG--------LVLEGALLLFLFLLGETLEERAKGRASDALSALLALAPS-TARVLQGDGSEEEVPVEE 73 (556)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEECCCeEEEEEHHH
Confidence 45566666667665 466788888888888999999999999999999888775 89999996 999999999
Q ss_pred ccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhh
Q 025033 92 LVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMET 171 (259)
Q Consensus 92 lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~ 171 (259)
|+|||+|.+++||++||||++++|+. .||||++||||.|+.|++|+. +|+||.+.+|.++++|+++|.+|++||+.+.
T Consensus 74 l~~GDiv~v~~G~~iP~Dg~vi~g~~-~vdes~lTGEs~pv~k~~g~~-v~aGt~v~~g~~~~~v~~~g~~t~~~~i~~~ 151 (556)
T TIGR01525 74 LQVGDIVIVRPGERIPVDGVVISGES-EVDESALTGESMPVEKKEGDE-VFAGTINGDGSLTIRVTKLGEDSTLAQIVKL 151 (556)
T ss_pred CCCCCEEEECCCCEeccceEEEecce-EEeehhccCCCCCEecCCcCE-EeeceEECCceEEEEEEEecccCHHHHHHHH
Confidence 99999999999999999999999997 899999999999999999998 9999999999999999999999999999999
Q ss_pred ccccccCchhHHH-------HHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHHHHhhhhhhhhhhhccccCCCCCCccc
Q 025033 172 LNEGMFDSWLFVG-------ILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQ 244 (259)
Q Consensus 172 ~~~~~~~~~~~~~-------~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~il~ia~P~al~l~~~P~a~~~~~~~ 244 (259)
+++++.+++++.. .+...+.+..+++++++.+.. . +........+++++|||+|.++ +|++...+..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~-~---~~~~~~~~~vlv~~~P~al~l~-~~~~~~~~~~~ 226 (556)
T TIGR01525 152 VEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALG-A---LGALYRALAVLVVACPCALGLA-TPVAILVAIGV 226 (556)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c---chHHHHHHHHHhhccccchheh-hHHHHHHHHHH
Confidence 9887777664432 333333332333222222211 1 1333444568999999999999 89887666665
Q ss_pred -cccceeecCC
Q 025033 245 -HHDGYEEIPS 254 (259)
Q Consensus 245 -~~~~~~~~~~ 254 (259)
+++|++.++.
T Consensus 227 ~~~~gilvk~~ 237 (556)
T TIGR01525 227 AARRGILIKGG 237 (556)
T ss_pred HHHCCceecCc
Confidence 4455555443
No 20
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-36 Score=281.67 Aligned_cols=228 Identities=30% Similarity=0.404 Sum_probs=186.1
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
+++++||.|++..+++.+|++|+.+. .|.++.+|.++++++.++..+|||++++++++|+++.|+ .++|+|
T Consensus 51 k~vLeQF~n~Li~iLL~sA~ISfvl~--------~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~-~~~V~R 121 (972)
T KOG0202|consen 51 KLVLEQFDNPLILILLLSAAISFVLA--------DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPP-MAHVLR 121 (972)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH--------hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCc-cceEEe
Confidence 47899999999999999999999998 455788888888889999999999999999999999986 999999
Q ss_pred CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCC-------------CCEEEecceE
Q 025033 81 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE-------------NPFLLAGTKV 147 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~-------------~~~v~~Gt~~ 147 (259)
+|+.+.++++||||||++.++-||+||||.++++..++.+|||.|||||.|+.|+.. .|++|+||.+
T Consensus 122 ~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V 201 (972)
T KOG0202|consen 122 SGKLQHILARELVPGDIVELKVGDKIPADLRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLV 201 (972)
T ss_pred cCcccceehhccCCCCEEEEecCCccccceeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeeccee
Confidence 999999999999999999999999999999999999999999999999999999532 3589999999
Q ss_pred ecceEEEEEEEeCccccccchhhhccccccCchhHHHHHH-------HHHHHHHHHHHHH--hHhhccCC-ccHHHHHHH
Q 025033 148 QDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILV-------LTVAFQIIIVEFL--GALASTVP-LSWHLWLLC 217 (259)
Q Consensus 148 ~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv~~~--~~~~~~~~-~~~~~~~~~ 217 (259)
..|.++++|+.||.+|.+|++.+.+++.+..|++..+.+. ..+.+.++.++++ +++....+ .+|-.-...
T Consensus 202 ~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~~kTPLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~~p~~~g~~fk~~~~ 281 (972)
T KOG0202|consen 202 VAGRAKGIVIGTGLNTEIGKIFKMMQATESPKTPLQKKLDEFGKQLSKVISFICVGVWLLNIGHFLDPVHGGSWFKGALY 281 (972)
T ss_pred ecCceeEEEEeccccchHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHheehhhhHHHhhhhhhccccccccchhchhh
Confidence 9999999999999999999999999998888876544333 2333333444333 33221111 112222223
Q ss_pred HHHhhhhhhhhhhhccccCC
Q 025033 218 ILIGAVSMPIAVVIKCIPVK 237 (259)
Q Consensus 218 ~~il~ia~P~al~l~~~P~a 237 (259)
++...+|..+|..++++|+.
T Consensus 282 ~f~IaVsLAVAAIPEGLPaV 301 (972)
T KOG0202|consen 282 YFKIAVSLAVAAIPEGLPAV 301 (972)
T ss_pred hhhHHHHHHHHhccCCCcch
Confidence 34456777888888888853
No 21
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.6e-35 Score=252.17 Aligned_cols=211 Identities=27% Similarity=0.412 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEe-cceeEE
Q 025033 42 IILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS-GYSLLI 120 (259)
Q Consensus 42 i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~-g~~l~v 120 (259)
+++++++..+++.++++++++..+++.+..++..++|+|||++++++++||+|||+|.+++||++||||++++ |+. .+
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g~~-~v 80 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESGSA-YV 80 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESSEE-EE
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCccceecccc-cc
Confidence 4555667788899999999999999988877645999999999999999999999999999999999999999 776 89
Q ss_pred eccccCCCCcceeec-----CCCCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchhHHHHH-------HH
Q 025033 121 DESSLSGESEPMYIC-----DENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGIL-------VL 188 (259)
Q Consensus 121 des~lTGEs~pv~k~-----~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~-------~~ 188 (259)
|||.+|||+.|+.|. +++. +++||.+.+|.+.++|++||.+|..+++.+.+.+.+..++++...+ ..
T Consensus 81 d~s~ltGes~pv~k~~~~~~~~~~-i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
T PF00122_consen 81 DESALTGESEPVKKTPLPLNPGNI-IFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIAKILII 159 (230)
T ss_dssp ECHHHHSBSSEEEESSSCCCTTTE-E-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccch-hhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHHHHHHh
Confidence 999999999999999 6664 9999999999999999999999999999999988777655443322 22
Q ss_pred HHHHHHHHHHHHhHhhccCCccH-HHHHHHHHHhhhhhhhhhhhccccCCCCCCccc-cccceeecCCCC
Q 025033 189 TVAFQIIIVEFLGALASTVPLSW-HLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIPSGP 256 (259)
Q Consensus 189 ~~~~~~~iv~~~~~~~~~~~~~~-~~~~~~~~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~~~~ 256 (259)
.+.+..+++++++.+. ....+| ..+..++.+++.+|||++.+. +|++......+ .++|+..+++.+
T Consensus 160 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~P~~l~~~-~~~~~~~~~~~~~~~~i~v~~~~a 227 (230)
T PF00122_consen 160 IILAIAILVFIIWFFN-DSGISFFKSFLFAISLLIVLIPCALPLA-LPLSLAIAARRLAKNGIIVKNLSA 227 (230)
T ss_dssp HHHHHHHHHHHHCHTG-STTCHCCHHHHHHHHHHHHHS-TTHHHH-HHHHHHHHHHHHHHTTEEESSTTH
T ss_pred cccccchhhhccceec-ccccccccccccccceeeeecccceeeh-HHHHHHHHHHHHHHCCEEEeCccc
Confidence 2222222222222111 112233 334445567999999999999 88766555555 556666666554
No 22
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=276.76 Aligned_cols=183 Identities=59% Similarity=0.931 Sum_probs=174.5
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
+++||.|++...+++.++|++|+.++++..+++.+|+++..+++.++++++++++.+|+++++.++|++...+.+..|+|
T Consensus 147 ~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~~ViR 226 (1034)
T KOG0204|consen 147 RFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKFQVIR 226 (1034)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEEEEEE
Confidence 47899999999999999999999999999999999999999999988888999999999999999999888888999999
Q ss_pred CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecC-CCCEEEecceEecceEEEEEEEe
Q 025033 81 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD-ENPFLLAGTKVQDGSVKMLVTTV 159 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~-~~~~v~~Gt~~~~g~~~~~V~~t 159 (259)
||+.++|+..|+++||++.++.||++||||++++|.+|.+|||++||||.++.|.+ .|+++++||.+.+|++++.||.+
T Consensus 227 ~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgkMlVTaV 306 (1034)
T KOG0204|consen 227 GGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGKMLVTAV 306 (1034)
T ss_pred CCEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999998 78899999999999999999999
Q ss_pred CccccccchhhhccccccCchhHH
Q 025033 160 GMRTEWGKLMETLNEGMFDSWLFV 183 (259)
Q Consensus 160 g~~t~~~~i~~~~~~~~~~~~~~~ 183 (259)
|.||.-|+++..+.+...+++++.
T Consensus 307 Gmnt~wG~~m~~l~~~~~e~tpLQ 330 (1034)
T KOG0204|consen 307 GMNTQWGIIMTLLGAGGEEETPLQ 330 (1034)
T ss_pred eecchHhhHHHhhhcCCCcCCcHH
Confidence 999999999999998886776543
No 23
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=5.5e-34 Score=287.65 Aligned_cols=232 Identities=20% Similarity=0.245 Sum_probs=174.4
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
+++++|+.+|++++++++.++++... .|+++++++++++++..+..++++++.++++++... +..++|+|
T Consensus 166 ~ll~~~~~~p~~i~~i~~~~l~~~~~--------~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~~--~~~v~V~R 235 (1054)
T TIGR01657 166 ELLKEEVLHPFYVFQVFSVILWLLDE--------YYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVHK--PQSVIVIR 235 (1054)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CeeEEEEE
Confidence 46899999999999988877666532 467888888888888888999988888877776543 35899999
Q ss_pred CCEEEEeeCCCccCCcEEEEc--CCCEEeccEEEEecceeEEeccccCCCCcceeecCC-----------------CCEE
Q 025033 81 DGQRQKVSIYDLVVGDIVHLS--IGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE-----------------NPFL 141 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~--~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~-----------------~~~v 141 (259)
||++++|+++||+|||+|.++ +|+++||||++++|+. .||||+|||||.|+.|.+. ++++
T Consensus 236 dg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g~~-~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~l 314 (1054)
T TIGR01657 236 NGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGSC-IVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVL 314 (1054)
T ss_pred CCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeCcE-EEecccccCCccceecccCCccccccccccccccccceEE
Confidence 999999999999999999999 9999999999999975 8999999999999999762 2479
Q ss_pred EecceEec-------ceEEEEEEEeCccccccchhhhccccccCchhHHHHH---HHHHHHHHHHHHHHhHhh-ccCCcc
Q 025033 142 LAGTKVQD-------GSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGIL---VLTVAFQIIIVEFLGALA-STVPLS 210 (259)
Q Consensus 142 ~~Gt~~~~-------g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~iv~~~~~~~-~~~~~~ 210 (259)
|+||.+.+ |.+.++|++||++|..||+++.+...+..++++.... ...+.+.+++..+..++. .....+
T Consensus 315 f~GT~v~~~~~~~g~g~~~~vV~~TG~~T~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~a~i~~i~~~~~~~~~~~~ 394 (1054)
T TIGR01657 315 FGGTKILQIRPYPGDTGCLAIVVRTGFSTSKGQLVRSILYPKPRVFKFYKDSFKFILFLAVLALIGFIYTIIELIKDGRP 394 (1054)
T ss_pred EcCCEEEEEecCCCCCcEEEEEEeCCccccchHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999985 7899999999999999999999887665554432221 111111111111111110 011234
Q ss_pred HHHHHHH-HHHhhhhhhhhhhhccccCCCCCCccc
Q 025033 211 WHLWLLC-ILIGAVSMPIAVVIKCIPVKKSEPKLQ 244 (259)
Q Consensus 211 ~~~~~~~-~~il~ia~P~al~l~~~P~a~~~~~~~ 244 (259)
+...+.+ +.++++++|++|.++ ++++...+..+
T Consensus 395 ~~~~~l~~l~iiv~~vP~~LP~~-~ti~l~~~~~r 428 (1054)
T TIGR01657 395 LGKIILRSLDIITIVVPPALPAE-LSIGINNSLAR 428 (1054)
T ss_pred HHHHHHHHHHHHHhhcCchHHHH-HHHHHHHHHHH
Confidence 5555554 457889999999998 76665444444
No 24
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-34 Score=284.52 Aligned_cols=224 Identities=26% Similarity=0.347 Sum_probs=174.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEEC
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD 81 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 81 (259)
.|++||++++..++++++.++++++...... .++..+..+++++.++...+++++++.+++++++.++ +++|+||
T Consensus 73 ~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~~----~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~-~~~V~R~ 147 (917)
T COG0474 73 KFLRQFKDPFIILLLVAALLSAFVGDWVDAG----VDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSP-KAKVLRD 147 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccC----cceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ceEEEeC
Confidence 6899999999999999999999988432110 3455667777788889999999999999999999864 8999999
Q ss_pred CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecC-------------CCCEEEecceEe
Q 025033 82 GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD-------------ENPFLLAGTKVQ 148 (259)
Q Consensus 82 g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~-------------~~~~v~~Gt~~~ 148 (259)
|++++++++||+|||+|.+++||+||||++++++++++||||+|||||.|+.|++ .+|++|+||.+.
T Consensus 148 g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~ 227 (917)
T COG0474 148 GKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVV 227 (917)
T ss_pred CcEEEecHHHCCCCcEEEECCCCccccceEEEEecCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEE
Confidence 9999999999999999999999999999999999988999999999999999973 357899999999
Q ss_pred cceEEEEEEEeCccccccchhhhccccccCchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHH-HHH
Q 025033 149 DGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLC-ILI 220 (259)
Q Consensus 149 ~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~-~~i 220 (259)
+|++.++|++||++|.+|++.+.+......++++ ...+..++.+..++++..+.... ...|...+.. ..+
T Consensus 228 ~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~v~l 305 (917)
T COG0474 228 SGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKLNKLGKFLLVLALVLGALVFVVGLFRG--GNGLLESFLTALAL 305 (917)
T ss_pred cceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHH
Confidence 9999999999999999999999999874444433 23333333333333333332211 1123333333 344
Q ss_pred hhhhhhhhhhhc
Q 025033 221 GAVSMPIAVVIK 232 (259)
Q Consensus 221 l~ia~P~al~l~ 232 (259)
.+.++|-+|-..
T Consensus 306 ~va~IPegLp~~ 317 (917)
T COG0474 306 AVAAVPEGLPAV 317 (917)
T ss_pred HHhccccchHHH
Confidence 555666666544
No 25
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-34 Score=264.83 Aligned_cols=224 Identities=23% Similarity=0.335 Sum_probs=183.1
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEEC
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD 81 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 81 (259)
.|+--|.+|+.|.+-.+|++...+. ..++.+++|.|...+..+++++.++.+++|+.+.+...+|++...+ +++|+||
T Consensus 64 KFl~Fm~~PlswVMEaAAimA~~La-ng~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~-KakVlRD 141 (942)
T KOG0205|consen 64 KFLGFMWNPLSWVMEAAAIMAIGLA-NGGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAP-KAKVLRD 141 (942)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHh-cCCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCc-ccEEeec
Confidence 4667789999999999999888776 4667889999999999999999999999999999999999888764 8999999
Q ss_pred CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCc
Q 025033 82 GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGM 161 (259)
Q Consensus 82 g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~ 161 (259)
|+|.+++.++||||||+.++.|+.+|||+++++|+-+++|+|.|||||.|++|++||. +|+||.|.+|++.++|++||.
T Consensus 142 Gkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~-vfSgSTcKqGE~eaVViATg~ 220 (942)
T KOG0205|consen 142 GKWSEQEASILVPGDILSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDE-VFSGSTCKQGEIEAVVIATGV 220 (942)
T ss_pred CeeeeeeccccccCceeeeccCCEecCccceecCCccccchhhhcCCccccccCCCCc-eecccccccceEEEEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cccccchhhhccccccCchhHHHHHHHH--HHHHHHHHHHHhHhhccCCcc---HHHHHHHHHHhhhh-hhhhh
Q 025033 162 RTEWGKLMETLNEGMFDSWLFVGILVLT--VAFQIIIVEFLGALASTVPLS---WHLWLLCILIGAVS-MPIAV 229 (259)
Q Consensus 162 ~t~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~~~~~~~~~~~~---~~~~~~~~~il~ia-~P~al 229 (259)
+|+.|+-++++.. -.+...|...+..+ +++..+++..+..+...++.+ ++...+...++.+. +|+|+
T Consensus 221 ~TF~GkAA~LVds-t~~~GHFqkVLt~IGn~ci~si~~g~lie~~vmy~~q~R~~r~~i~nLlvllIGgiPiam 293 (942)
T KOG0205|consen 221 HTFFGKAAHLVDS-TNQVGHFQKVLTGIGNFCICSIALGMLIEITVMYPIQHRLYRDGIDNLLVLLIGGIPIAM 293 (942)
T ss_pred ceeehhhHHhhcC-CCCcccHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhheheeeeccccccc
Confidence 9999999999988 34445565544322 112222222333333334432 22333444556666 78776
No 26
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.97 E-value=2.3e-31 Score=250.55 Aligned_cols=206 Identities=25% Similarity=0.344 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhch-hCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEecc
Q 025033 45 SILLVVMVTAISDYKQSLQFRDLDRE-KKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDES 123 (259)
Q Consensus 45 ~i~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes 123 (259)
+++++.+++.+++++.++..+++.+. .++.+++++|+| +++|++++|+|||++.+++||++||||++++|++ .||||
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~~-~vdes 82 (499)
T TIGR01494 5 LVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGSC-FVDES 82 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEccE-EEEcc
Confidence 44567788999999999999999883 233589999999 9999999999999999999999999999999986 89999
Q ss_pred ccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchh-------HH-HHHHHHHHHHHH
Q 025033 124 SLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWL-------FV-GILVLTVAFQII 195 (259)
Q Consensus 124 ~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~ 195 (259)
+|||||.|+.|++++. +++||.+.+|+.+++|+++|.+|..+++...+++++..+++ +. ..+..++..+.+
T Consensus 83 ~LTGEs~pv~k~~g~~-v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~ 161 (499)
T TIGR01494 83 NLTGESVPVLKTAGDA-VFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIAL 161 (499)
T ss_pred cccCCCCCeeeccCCc-cccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999887765543 22 222222222222
Q ss_pred HHHHHhHhhccCCc-cHHHHHHHH-HHhhhhhhhhhhhccccCCCCCCccccc-cceeecCCC
Q 025033 196 IVEFLGALASTVPL-SWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSEPKLQHH-DGYEEIPSG 255 (259)
Q Consensus 196 iv~~~~~~~~~~~~-~~~~~~~~~-~il~ia~P~al~l~~~P~a~~~~~~~~~-~~~~~~~~~ 255 (259)
+.+++ ++...... +|..++.++ .+++++|||||.++ +|++......+.+ +|++.+++.
T Consensus 162 ~~~~~-~~~~~~~~~~~~~~~~~~~~vl~~~~P~aL~~~-~~~~~~~~~~~~~~~gilvk~~~ 222 (499)
T TIGR01494 162 AVFLF-WAIGLWDPNSIFKIFLRALILLVIAIPIALPLA-VTIALAVGDARLAKKGIVVRSLN 222 (499)
T ss_pred HHHHH-HHHHHcccccHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHHHCCcEEechh
Confidence 22222 22111111 255555555 57999999999999 9987766666544 455554443
No 27
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.8e-29 Score=238.87 Aligned_cols=220 Identities=23% Similarity=0.347 Sum_probs=167.0
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
++++++..+||+++.. +|.++|+..+ .++.+.+|+++.+.+..++.++.++++++++++.+.. ..++|+|
T Consensus 187 ~iLv~EvL~PfYlFQ~----fSv~lW~~d~----Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~--~~V~V~R 256 (1140)
T KOG0208|consen 187 QILVKEVLNPFYLFQA----FSVALWLADS----YYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFT--CPVTVIR 256 (1140)
T ss_pred HHHHHhccchHHHHHh----HHhhhhhccc----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEE
Confidence 4688899999995555 4555554443 2456677777777778888888888888888877665 4799999
Q ss_pred CCEEEEeeCCCccCCcEEEEcC-CCEEeccEEEEecceeEEeccccCCCCcceeecCC------------------CCEE
Q 025033 81 DGQRQKVSIYDLVVGDIVHLSI-GDQVPADGIFISGYSLLIDESSLSGESEPMYICDE------------------NPFL 141 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~~-G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~------------------~~~v 141 (259)
||.|++|+++||||||++.+.+ |...|||+++++|++ .+|||+|||||.|+.|.+- .|++
T Consensus 257 ~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~c-ivNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~l 335 (1140)
T KOG0208|consen 257 DGFWETVDSSELVPGDILYIPPPGKIMPCDALLISGDC-IVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTL 335 (1140)
T ss_pred CCEEEEEeccccccccEEEECCCCeEeecceEEEeCcE-EeecccccCCcccccccCCccccccCcCeeechhhcCccee
Confidence 9999999999999999999998 899999999999997 7999999999999999863 2479
Q ss_pred EecceEe------cceEEEEEEEeCccccccchhhhccccccCchhHHHHHHHHHHHHHHHHHHHhHhhcc-----CCcc
Q 025033 142 LAGTKVQ------DGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALAST-----VPLS 210 (259)
Q Consensus 142 ~~Gt~~~------~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~-----~~~~ 210 (259)
|+||.++ ++.+.++|+|||++|..||+++.+..++....+|.+=...++..+.. +.++++++.. ...+
T Consensus 336 fcGT~vlq~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPkP~~fkfyrds~~fi~~l~~-ia~~gfiy~~i~l~~~g~~ 414 (1140)
T KOG0208|consen 336 FCGTKVLQARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPKPVNFKFYRDSFKFILFLVI-IALIGFIYTAIVLNLLGVP 414 (1140)
T ss_pred eccceEEEeecCCCCceEEEEEeccccccccHHHHhhcCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHhHhHHHcCCC
Confidence 9999997 46789999999999999999999999988877765433322222111 1222222211 2335
Q ss_pred HHHHHHHHH-Hhhhhhhhhhhhc
Q 025033 211 WHLWLLCIL-IGAVSMPIAVVIK 232 (259)
Q Consensus 211 ~~~~~~~~~-il~ia~P~al~l~ 232 (259)
.+..+.+.+ ++++..|.||--+
T Consensus 415 ~~~iiirsLDliTi~VPPALPAa 437 (1140)
T KOG0208|consen 415 LKTIIIRSLDLITIVVPPALPAA 437 (1140)
T ss_pred HHHHhhhhhcEEEEecCCCchhh
Confidence 566666664 6788888776444
No 28
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.95 E-value=9.3e-27 Score=235.68 Aligned_cols=164 Identities=20% Similarity=0.267 Sum_probs=126.4
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
+.|++||+.+.|+||++.+++++++.....++ ..+..+ +++++++....+.++++++.++.+ ..++..++|+|
T Consensus 19 ~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~-~t~~~p--L~~v~~~~~~~~~~ed~~r~~~d~----~~n~~~~~v~~ 91 (1057)
T TIGR01652 19 KNLFEQFKRFANLYFLVVALLQQVPILSPTYR-GTSIVP--LAFVLIVTAIKEAIEDIRRRRRDK----EVNNRLTEVLE 91 (1057)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCc-cHhHHh--HHHHHHHHHHHHHHHHHHHHHhHH----HHhCcEEEEEC
Confidence 36899999999999999999999987665432 122211 222222334445555555544433 33445899999
Q ss_pred C-CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecce----eEEeccccCCCCcceeecCC------------------
Q 025033 81 D-GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS----LLIDESSLSGESEPMYICDE------------------ 137 (259)
Q Consensus 81 ~-g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~----l~vdes~lTGEs~pv~k~~~------------------ 137 (259)
+ |++++++++|++|||+|.+++||++|||+++++++. +.||||.|||||.|+.|++.
T Consensus 92 ~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~ 171 (1057)
T TIGR01652 92 GHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGE 171 (1057)
T ss_pred CCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEE
Confidence 7 799999999999999999999999999999998543 69999999999999998641
Q ss_pred -----------------------------CCEEEecceEec-ceEEEEEEEeCccccccchhhh
Q 025033 138 -----------------------------NPFLLAGTKVQD-GSVKMLVTTVGMRTEWGKLMET 171 (259)
Q Consensus 138 -----------------------------~~~v~~Gt~~~~-g~~~~~V~~tg~~t~~~~i~~~ 171 (259)
+|++++||.+.+ |.+.+.|++||.+|.+++....
T Consensus 172 i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n~~~ 235 (1057)
T TIGR01652 172 IECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRNATQ 235 (1057)
T ss_pred EEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhcCCC
Confidence 146788998888 8999999999999988875443
No 29
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-27 Score=224.23 Aligned_cols=179 Identities=25% Similarity=0.275 Sum_probs=156.1
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhccCCC-----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceE
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLATEGW-----PEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFI 76 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~-----~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (259)
.|.+|+++-+.++++++++++++.+...... +...+.++++...+...++...+++.+..+-+++..++.|. .+
T Consensus 87 kf~kq~f~~~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~-~~ 165 (1019)
T KOG0203|consen 87 KFLRQLFGGFSILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQ-QA 165 (1019)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchh-hh
Confidence 4889999999999999999999877654322 34455666666556566788899999999999999998885 89
Q ss_pred EEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCC---------CCEEEecceE
Q 025033 77 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE---------NPFLLAGTKV 147 (259)
Q Consensus 77 ~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~---------~~~v~~Gt~~ 147 (259)
+|+|||+...+.++|||+||++.++-|+++|||.+++++..+++|+|++||||+|..+++. +|+-|.+|.+
T Consensus 166 ~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~ 245 (1019)
T KOG0203|consen 166 LVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNC 245 (1019)
T ss_pred eeeecceeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999998763 4689999999
Q ss_pred ecceEEEEEEEeCccccccchhhhccccccCchh
Q 025033 148 QDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWL 181 (259)
Q Consensus 148 ~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~ 181 (259)
.+|.+++.|.+||++|.+|+|..+....+..+++
T Consensus 246 veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~ 279 (1019)
T KOG0203|consen 246 VEGTGRGIVIATGDRTVMGRIASLASGLEDGKTP 279 (1019)
T ss_pred ecceEEEEEEecCCceEEeehhhhhccCCCCCCc
Confidence 9999999999999999999999988766665553
No 30
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.4e-25 Score=201.18 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=152.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhc----cC-CCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEE
Q 025033 6 ALQDLTLIILMVCAVLSIGVGLA----TE-GWPEGMYD--GLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQV 78 (259)
Q Consensus 6 ~~~~~~~~l~l~~a~~s~~~~~~----~~-~~~~~~~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 78 (259)
+.+||..+...+.++++.++.+. .. +.+..|+- .+.+++.+++..+-|++.|.|.+.+..+|++.+.+..+++
T Consensus 29 ~~kNPVMFvv~vg~~lt~~l~~~~~lfg~~~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~ 108 (681)
T COG2216 29 LVKNPVMFVVEVGSILTTFLTIFPDLFGGTGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARL 108 (681)
T ss_pred hhhCCeEEeehHHHHHHHHHHHhhhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 44677666666666666643332 22 22233433 4444555677889999999999999999999887667887
Q ss_pred EEC-CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCC---CCEEEecceEecceEEE
Q 025033 79 TRD-GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE---NPFLLAGTKVQDGSVKM 154 (259)
Q Consensus 79 ~r~-g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~---~~~v~~Gt~~~~g~~~~ 154 (259)
+++ |+++.+++.+|+.||+|+|.+||.||+||.+++|.+ .||||.+||||.||.|..| +. |-.||.+++...+.
T Consensus 109 l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~a-sVdESAITGESaPViresGgD~ss-VtGgT~v~SD~l~i 186 (681)
T COG2216 109 LRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVIRESGGDFSS-VTGGTRVLSDWLKI 186 (681)
T ss_pred hcCCCCeeeccccccccCCEEEEecCCCccCCCeEEeeee-ecchhhccCCCcceeeccCCCccc-ccCCcEEeeeeEEE
Confidence 776 899999999999999999999999999999999998 8999999999999999998 55 99999999999999
Q ss_pred EEEEeCccccccchhhhccccccCchhHHHHHHHHHHHHHH
Q 025033 155 LVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQII 195 (259)
Q Consensus 155 ~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (259)
+++....+|++.|++.+++.++++|++-..-+..++..+.+
T Consensus 187 rita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LTl 227 (681)
T COG2216 187 RITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGLTL 227 (681)
T ss_pred EEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999876555544444333
No 31
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.92 E-value=1.3e-23 Score=212.63 Aligned_cols=160 Identities=24% Similarity=0.298 Sum_probs=121.4
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
+.+++||+.+.|+||++.+++++++.++..++.. .+++++++.++..+.+..++.+.++-++..++..++++|
T Consensus 105 ~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~~~~t-------~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~ 177 (1178)
T PLN03190 105 RNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGA-------SILPLAFVLLVTAVKDAYEDWRRHRSDRIENNRLAWVLV 177 (1178)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhCCCcccCCcch-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCcEEEEEE
Confidence 3589999999999999999999998876554221 222333333334444444444444334444556899999
Q ss_pred CCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEe-----cceeEEeccccCCCCcceeecCC------------------
Q 025033 81 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS-----GYSLLIDESSLSGESEPMYICDE------------------ 137 (259)
Q Consensus 81 ~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~-----g~~l~vdes~lTGEs~pv~k~~~------------------ 137 (259)
+|+++++++++|++||+|.+++||++|||+++++ |. ++||||+|||||.|+.|.++
T Consensus 178 ~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~-~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~ 256 (1178)
T PLN03190 178 DDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGV-AYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIK 256 (1178)
T ss_pred CCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCce-EEEEccccCCeeeeeEecccchhhhcchhhhhceEEEE
Confidence 9999999999999999999999999999999998 44 48999999999999999743
Q ss_pred --------------------------CCEEEecceEecc-eEEEEEEEeCccccccch
Q 025033 138 --------------------------NPFLLAGTKVQDG-SVKMLVTTVGMRTEWGKL 168 (259)
Q Consensus 138 --------------------------~~~v~~Gt~~~~g-~~~~~V~~tg~~t~~~~i 168 (259)
+|+++.||.+.+. .+.++|++||++|..++-
T Consensus 257 ~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK~~~N 314 (1178)
T PLN03190 257 CEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGRETKAMLN 314 (1178)
T ss_pred EeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEechhhhHhhc
Confidence 2356667766653 699999999999985443
No 32
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.4e-24 Score=198.94 Aligned_cols=231 Identities=21% Similarity=0.249 Sum_probs=155.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCC-ceEEEEEC
Q 025033 3 VWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKK-IFIQVTRD 81 (259)
Q Consensus 3 ~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~r~ 81 (259)
|.|.-..|++ +.++++..+|+..++ ||.+.+.+++ ...+|.-..+++.+.+.+++++.+. ..+.|+|+
T Consensus 192 FkE~A~aPfF----VFQVFcvgLWCLDey----WYySlFtLfM---li~fE~tlV~Qrm~~lse~R~Mg~kpy~I~v~R~ 260 (1160)
T KOG0209|consen 192 FKEHAVAPFF----VFQVFCVGLWCLDEY----WYYSLFTLFM---LIAFEATLVKQRMRTLSEFRTMGNKPYTINVYRN 260 (1160)
T ss_pred HHHhccCcee----eHhHHhHHHHHhHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 3344444555 455555555555543 4544433333 3445777777888888888888653 47889999
Q ss_pred CEEEEeeCCCccCCcEEEEcC---CCEEeccEEEEecceeEEeccccCCCCcceeecCC----------------CCEEE
Q 025033 82 GQRQKVSIYDLVVGDIVHLSI---GDQVPADGIFISGYSLLIDESSLSGESEPMYICDE----------------NPFLL 142 (259)
Q Consensus 82 g~~~~i~~~~lv~GDii~v~~---G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~----------------~~~v~ 142 (259)
++|+.+.++||.|||++.+.. ...+|||..++.|++ .|||+||||||.|..|.+- .+++|
T Consensus 261 kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gsc-iVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlf 339 (1160)
T KOG0209|consen 261 KKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSC-IVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLF 339 (1160)
T ss_pred CcceeccccccCCCceEEeccCcccCcCCceEEEEecce-eechhhhcCCCccccccccccCChhhhcccccccceEEEE
Confidence 999999999999999999977 568999999999997 8999999999999999752 13799
Q ss_pred ecceEe-------------cceEEEEEEEeCccccccchhhhccccccCc---hhHHHHHHHHHHHHHHHHHHHhHhhcc
Q 025033 143 AGTKVQ-------------DGSVKMLVTTVGMRTEWGKLMETLNEGMFDS---WLFVGILVLTVAFQIIIVEFLGALAST 206 (259)
Q Consensus 143 ~Gt~~~-------------~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~~~~~~~~ 206 (259)
+||.++ +|.+.+.|.+||++|..|++.+.+.-+.++- .+-..+++.+..+++++...-.|.-..
T Consensus 340 GGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf~aervTaNn~Etf~FILFLlVFAiaAa~Yvwv~Gs 419 (1160)
T KOG0209|consen 340 GGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILFSAERVTANNRETFIFILFLLVFAIAAAGYVWVEGS 419 (1160)
T ss_pred cCceEEEecCCccccccCCCCCeEEEEEeccccccCCceeeeEEecceeeeeccHHHHHHHHHHHHHHHHhhheEEEecc
Confidence 999997 4668999999999999999999888543322 222222222211111111111111111
Q ss_pred -C--CccHHHHHHHHHHhhhhhhhhhhhccccCCCCCCccccc
Q 025033 207 -V--PLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQHH 246 (259)
Q Consensus 207 -~--~~~~~~~~~~~~il~ia~P~al~l~~~P~a~~~~~~~~~ 246 (259)
. ...++..+-|.+|+..-+|.-|-++ +..|...+..+-.
T Consensus 420 kd~~RsrYKL~LeC~LIlTSVvPpELPmE-LSmAVNsSL~ALa 461 (1160)
T KOG0209|consen 420 KDPTRSRYKLFLECTLILTSVVPPELPME-LSMAVNSSLIALA 461 (1160)
T ss_pred cCcchhhhheeeeeeEEEeccCCCCCchh-hhHHHHHHHHHHH
Confidence 1 1245556667777888888877777 5555544444433
No 33
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.4e-18 Score=161.92 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=152.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhCCceEEEE-
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLV-VMVTAISDYKQSLQFRDLDREKKKIFIQVT- 79 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~- 79 (259)
.+++||+.++|++++..+..++.+.+..+. ...|+.++..++.+.+. ..++.++++++++. .++...+++
T Consensus 98 vl~~qF~~F~nlyfll~alsQ~ip~~~ig~-l~ty~~pl~fvl~itl~keavdd~~r~~rd~~-------~Nse~y~~lt 169 (1051)
T KOG0210|consen 98 VLFEQFKFFLNLYFLLVALSQLIPALKIGY-LSTYWGPLGFVLTITLIKEAVDDLKRRRRDRE-------LNSEKYTKLT 169 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchheecc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhhheeec
Confidence 578999999999999999998887754433 33344444333333222 23333333333322 222234444
Q ss_pred ECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecce----eEEeccccCCCCcceeecC-------------------
Q 025033 80 RDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS----LLIDESSLSGESEPMYICD------------------- 136 (259)
Q Consensus 80 r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~----l~vdes~lTGEs~pv~k~~------------------- 136 (259)
|||...+ +++++++||+|.++++++||||.++++.+. +.+-+..|+||+..+.|-|
T Consensus 170 r~~~~~~-~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~ 248 (1051)
T KOG0210|consen 170 RDGTRRE-PSSDIKVGDVIIVHKDERVPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVY 248 (1051)
T ss_pred cCCcccc-cccccccccEEEEecCCcCCcceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEe
Confidence 6665544 999999999999999999999999997442 5899999999998776632
Q ss_pred -------------------C--------CCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchhHHHHHHHH
Q 025033 137 -------------------E--------NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLT 189 (259)
Q Consensus 137 -------------------~--------~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (259)
+ +|++|++|++.+|.+.+.|++||.+|+....-...+.+-..-..-++.+.++
T Consensus 249 Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~~gvVvYTG~dtRsvMNts~pr~KvGllelEiN~ltKi 328 (1051)
T KOG0210|consen 249 AEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTAIGVVVYTGRDTRSVMNTSRPRSKVGLLELEINGLTKI 328 (1051)
T ss_pred ccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcEEEEEEEecccHHHHhccCCcccccceeeeecccHHHH
Confidence 0 3579999999999999999999999965332222221111112334444444
Q ss_pred HHHHHHHHHHHhHhhccCCccHHHHHHHHHHhhhh-hhhhhhhccccCCCCCCccc
Q 025033 190 VAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVS-MPIAVVIKCIPVKKSEPKLQ 244 (259)
Q Consensus 190 ~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~il~ia-~P~al~l~~~P~a~~~~~~~ 244 (259)
....++++..+.....++...|...++++++|... +|++|-+.+=....+++...
T Consensus 329 L~~~vlvLs~vmv~~~g~~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i 384 (1051)
T KOG0210|consen 329 LFCFVLVLSIVMVAMKGFGSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQI 384 (1051)
T ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhc
Confidence 44444444444444556667888888888775555 59999887334455555544
No 34
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=99.64 E-value=8.4e-16 Score=153.09 Aligned_cols=165 Identities=21% Similarity=0.266 Sum_probs=131.4
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 80 (259)
+.+++||+++-|++|++.++++.++ +.+.++ | ..+++++++..++++.+..++.+.++.++..++.+++|.+
T Consensus 50 k~l~eQf~r~aN~yFl~~~il~~ip-~~~~~~---~----~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~~~~~v~~ 121 (1151)
T KOG0206|consen 50 KNLFEQFHRVANLYFLFIAILQFIP-LSPFNP---Y----TTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNNRKVEVLR 121 (1151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCc-ccccCc---c----ceeeceeeeehHHHHHHHHhhhhhhhccHHhhcceeEEec
Confidence 3589999999999999999999998 444332 1 1233344445567777777777777888888878999998
Q ss_pred CCE-EEEeeCCCccCCcEEEEcCCCEEeccEEEEecce----eEEeccccCCCCcceeecC-------------------
Q 025033 81 DGQ-RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS----LLIDESSLSGESEPMYICD------------------- 136 (259)
Q Consensus 81 ~g~-~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~----l~vdes~lTGEs~pv~k~~------------------- 136 (259)
++. +++..++++++||+|.+..++.+|||.++++++. |+|++++|+||+..+.|+.
T Consensus 122 ~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~ 201 (1151)
T KOG0206|consen 122 GDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGW 201 (1151)
T ss_pred CCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCc
Confidence 644 8999999999999999999999999999998664 8999999999999887752
Q ss_pred ---------------------------CCCEEEecceEecc-eEEEEEEEeCccccccchhhhcc
Q 025033 137 ---------------------------ENPFLLAGTKVQDG-SVKMLVTTVGMRTEWGKLMETLN 173 (259)
Q Consensus 137 ---------------------------~~~~v~~Gt~~~~g-~~~~~V~~tg~~t~~~~i~~~~~ 173 (259)
.++++..|+.+.+. .+.+.|+.+|++|..++......
T Consensus 202 i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n~~~~~ 266 (1151)
T KOG0206|consen 202 IECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQNSGKPP 266 (1151)
T ss_pred eEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcchHHHhcCCCc
Confidence 02356777777764 67899999999999888666533
No 35
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=94.21 E-value=0.058 Score=36.01 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.3
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHh
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVG 26 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~ 26 (259)
+++++||++|+.++++++++++++++
T Consensus 38 ~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 38 LRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 36899999999999999999999764
No 36
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.63 E-value=1.1 Score=46.05 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhC-----CceEE----EEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEE
Q 025033 43 ILSILLVVMVTAISDYKQSLQFRDLDREKK-----KIFIQ----VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFI 113 (259)
Q Consensus 43 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~----v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl 113 (259)
+++..+.++...++..++-++++++.+... ..... -+.-|+...+..-|.+|-|..+++..+ .-+|=-.+
T Consensus 113 i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~-l~VdEs~L 191 (917)
T COG0474 113 VVINALLGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD-LEVDESAL 191 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-ceEEcccc
Confidence 344344456677777777777766655432 11122 234588888888899999988888776 45566666
Q ss_pred ecceeEEecccc--CCCCccee------ecCCCCEEEecceEecceEEEEEEEeCccccccc
Q 025033 114 SGYSLLIDESSL--SGESEPMY------ICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGK 167 (259)
Q Consensus 114 ~g~~l~vdes~l--TGEs~pv~------k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~ 167 (259)
.|++.-++-... +.|..|.. -..|.. |..|+-..--...+.-|..|+.+...+
T Consensus 192 TGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~-V~~G~~~giVvaTG~~T~~G~ia~~~~ 252 (917)
T COG0474 192 TGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTT-VVSGRAKGIVVATGFETEFGKIARLLP 252 (917)
T ss_pred cCCCcchhccccccccccccccCCccceEEeCCE-EEcceEEEEEEEEcCccHHHHHHHhhc
Confidence 666532222111 11222222 124555 777763332334444455555554433
No 37
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=0.19 Score=48.75 Aligned_cols=84 Identities=23% Similarity=0.259 Sum_probs=58.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh----c----hhC-------C--ce------------EEEEECCE
Q 025033 34 EGMYDGLGIILSILLVVMVTAISDYKQSLQFR-DLD----R----EKK-------K--IF------------IQVTRDGQ 83 (259)
Q Consensus 34 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~l~----~----~~~-------~--~~------------~~v~r~g~ 83 (259)
.++..+..+.+++++...++..+++.+++..+ +++ + .+. + ++ -+..|||.
T Consensus 86 igl~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGh 165 (1354)
T KOG4383|consen 86 IGLSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGH 165 (1354)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCe
Confidence 45667777777777777888777765544321 111 1 110 0 00 23569999
Q ss_pred EEEeeCCCccCCcEEEEcCCCEEeccEEEEecce
Q 025033 84 RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS 117 (259)
Q Consensus 84 ~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~ 117 (259)
..++|..-||.||+|-++||+.-||.+.=.+++.
T Consensus 166 lm~lP~~LLVeGDiIa~RPGQeafan~~g~~dde 199 (1354)
T KOG4383|consen 166 LMELPRILLVEGDIIAFRPGQEAFANCEGFDDDE 199 (1354)
T ss_pred eeecceeEEEeccEEEecCCccccccccccCCCc
Confidence 9999999999999999999999999887666543
No 38
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=91.75 E-value=0.038 Score=54.61 Aligned_cols=80 Identities=43% Similarity=0.741 Sum_probs=64.3
Q ss_pred eCccc-cccchhhhccccccC----------chhHHHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHHHHhhhhhhh
Q 025033 159 VGMRT-EWGKLMETLNEGMFD----------SWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPI 227 (259)
Q Consensus 159 tg~~t-~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~il~ia~P~ 227 (259)
.-+|| .+.|.++.++..+-+ +..|..++...+.++.+++.|.+..+++.+++|..|+.|+.+.+.++|.
T Consensus 919 iIFNtFV~~qvFNEinaRki~~~NvFkgi~~N~~F~~ii~~T~v~QviIveF~g~~~st~~L~~~qWl~ci~~g~~sl~~ 998 (1034)
T KOG0204|consen 919 IIFNTFVFCQVFNEINARKIDERNVFKGIFRNRLFCVIITITVVSQVIIVEFGGAFFSTTPLSLTQWLWCIFIGVLSLPW 998 (1034)
T ss_pred eehhHHHHHHHHHHHhhcchhHHhHHHHHhcCceEEEEeeeeeehhhhhhhhcCcceeeecccHHHHHHHHHHHHHHHHH
Confidence 44666 566777777644433 2345566667788899999999999999999999999999999999999
Q ss_pred hhhhccccCCC
Q 025033 228 AVVIKCIPVKK 238 (259)
Q Consensus 228 al~l~~~P~a~ 238 (259)
+..+..+|...
T Consensus 999 g~~ik~iP~~~ 1009 (1034)
T KOG0204|consen 999 GQLLKCIPVSS 1009 (1034)
T ss_pred HHHheeccccc
Confidence 99999999874
No 39
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=75.10 E-value=5.4 Score=31.90 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=34.1
Q ss_pred eCCCccCCcEEEEcCCCEEe--ccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEE
Q 025033 88 SIYDLVVGDIVHLSIGDQVP--ADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVK 153 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP--~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~ 153 (259)
+...+.+|.-+.|..|..+| +|+++-.-.. .+.+..++ ......+|+|+-..|+-+..|...
T Consensus 80 ~~~~l~~g~av~I~TGa~vP~g~DaVV~~E~~-~~~~~~i~---i~~~~~~g~nIr~~G~di~~G~~l 143 (162)
T PF03453_consen 80 PPIPLQPGEAVRIMTGAPVPEGADAVVPIEDT-EVEGDEIR---ILKPVKPGQNIRPKGEDIKKGEVL 143 (162)
T ss_dssp -SSB--TTEEEEE-TTSB--TT-SEEEEGGGC-EEETTEEE---ESS--STTTTEE-TTSSB-TTSEE
T ss_pred ccccCCCCeEEEEeCCCccCCCCCEEEEehhe-eecccEEE---EeeccCCCCcEEeCCccccCCCEE
Confidence 34789999999999999999 7998866554 44444221 112234567766677777777654
No 40
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=72.61 E-value=12 Score=26.30 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=24.1
Q ss_pred HhHhhccCCccHHHHHHH------HHHhhhhhhhhhhhccccCCCC
Q 025033 200 LGALASTVPLSWHLWLLC------ILIGAVSMPIAVVIKCIPVKKS 239 (259)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~------~~il~ia~P~al~l~~~P~a~~ 239 (259)
++....-++.++.+|-.. +.+++-+.+..+.++ +|+.++
T Consensus 35 ~gGVi~qYniP~s~WttsMf~~Q~ami~vYS~VFT~L~s-IPlg~~ 79 (85)
T PF10749_consen 35 IGGVIEQYNIPFSEWTTSMFILQGAMILVYSIVFTILLS-IPLGFY 79 (85)
T ss_pred HHhHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhe
Confidence 333344455555555332 356788888888888 888653
No 41
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=70.73 E-value=15 Score=25.00 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=24.4
Q ss_pred ceEEEEECCEEEEee---CCCccCCcEEEEcCCCE
Q 025033 74 IFIQVTRDGQRQKVS---IYDLVVGDIVHLSIGDQ 105 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~---~~~lv~GDii~v~~G~~ 105 (259)
..++|-.+|..++++ ..++.|||.+++..|.-
T Consensus 17 ~~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~A 51 (68)
T PF01455_consen 17 GMAVVDFGGVRREVSLALVPDVKVGDYVLVHAGFA 51 (68)
T ss_dssp TEEEEEETTEEEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred CEEEEEcCCcEEEEEEEEeCCCCCCCEEEEecChh
Confidence 467888889988886 45688999999999954
No 42
>PF15584 Imm44: Immunity protein 44
Probab=65.92 E-value=2.6 Score=30.36 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCEEeccEEE
Q 025033 94 VGDIVHLSIGDQVPADGIF 112 (259)
Q Consensus 94 ~GDii~v~~G~~iP~D~~v 112 (259)
+.+-.+|+.|++|||||+=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4566788999999999985
No 43
>COG5547 Small integral membrane protein [Function unknown]
Probab=65.66 E-value=35 Score=22.34 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=29.9
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYK 59 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 59 (259)
-++++|+.|..--+...-+..+++.+ +++-++.++++..++..+..+.++.
T Consensus 2 eflk~fkypIIgglvglliAili~t~-------GfwKtilviil~~lGv~iGl~~~r~ 52 (62)
T COG5547 2 EFLKKFKYPIIGGLVGLLIAILILTF-------GFWKTILVIILILLGVYIGLYKKRT 52 (62)
T ss_pred cHHHHhccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36889998876544444333333332 3556666666666666666655544
No 44
>PRK11507 ribosome-associated protein; Provisional
Probab=62.99 E-value=12 Score=25.73 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEEECCEEEEeeCCCccCCcEEEEcC
Q 025033 77 QVTRDGQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 77 ~v~r~g~~~~i~~~~lv~GDii~v~~ 102 (259)
.|..||+...-.-+.|.|||+|.+..
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~g 63 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFAG 63 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEECC
Confidence 47789999888999999999999864
No 45
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=62.87 E-value=2.1e+02 Score=30.22 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhC----CceE-----EEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEE
Q 025033 41 GIILSILLVVMVTAISDYKQSLQFRDLDREKK----KIFI-----QVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGI 111 (259)
Q Consensus 41 ~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~-----~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~ 111 (259)
+++++-.+..+...+...++-++++++..... +.+. .=+.-|+...+..-|.+|-|..+++. +.+-+|=-
T Consensus 89 ~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~-~~L~VDES 167 (1053)
T TIGR01523 89 AIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIET-KNFDTDEA 167 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEe-CceEEEch
Confidence 34455555666666777777777877755432 1111 12245888999999999999999875 34556666
Q ss_pred EEecceeEE
Q 025033 112 FISGYSLLI 120 (259)
Q Consensus 112 vl~g~~l~v 120 (259)
.+.|++.-|
T Consensus 168 ~LTGES~pV 176 (1053)
T TIGR01523 168 LLTGESLPV 176 (1053)
T ss_pred hhcCCCCce
Confidence 677766433
No 46
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=61.60 E-value=4.2 Score=28.83 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.5
Q ss_pred eeCCCccCCcEEEE-cCCCEEec
Q 025033 87 VSIYDLVVGDIVHL-SIGDQVPA 108 (259)
Q Consensus 87 i~~~~lv~GDii~v-~~G~~iP~ 108 (259)
+...++.+||.+.+ ++||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 35578999999998 58999994
No 47
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=60.65 E-value=11 Score=36.87 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=23.7
Q ss_pred eCCCccCCcEEEE-cCCCEEe-ccEEEEecc
Q 025033 88 SIYDLVVGDIVHL-SIGDQVP-ADGIFISGY 116 (259)
Q Consensus 88 ~~~~lv~GDii~v-~~G~~iP-~D~~vl~g~ 116 (259)
.-.++.+||.|.| ++||.|| +++++.+..
T Consensus 364 ~rkdIrIGDtV~V~kAGdVIP~V~~Vv~e~R 394 (667)
T COG0272 364 KRKDIRIGDTVVVRKAGDVIPQVVGVVLEKR 394 (667)
T ss_pred HhcCCCCCCEEEEEecCCCCcceeeeecccC
Confidence 4589999999999 5899999 677776654
No 48
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=60.52 E-value=12 Score=26.42 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=18.7
Q ss_pred eEEEEECCEEEEeeCCCccCCcEEEEc
Q 025033 75 FIQVTRDGQRQKVSIYDLVVGDIVHLS 101 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~~lv~GDii~v~ 101 (259)
...+.++++.+.+.+++|++||.+.+.
T Consensus 73 ~~~~~~~~~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 73 LLLVRDGGKLVWVFASELKPGDYVLVP 99 (100)
T ss_pred EEEEecCCcEEEEEHHHCCCCCEEEec
Confidence 344455566667888888888888764
No 49
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=60.12 E-value=5.6 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=14.8
Q ss_pred EEECCEEEEeeCCCccCCcEEEEcCCCE
Q 025033 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQ 105 (259)
Q Consensus 78 v~r~g~~~~i~~~~lv~GDii~v~~G~~ 105 (259)
|..||+.+.-.-..|.+||+|.+ .|+.
T Consensus 35 V~VNGe~e~rrg~Kl~~GD~V~~-~~~~ 61 (65)
T PF13275_consen 35 VKVNGEVETRRGKKLRPGDVVEI-DGEE 61 (65)
T ss_dssp HEETTB----SS----SSEEEEE-TTEE
T ss_pred eEECCEEccccCCcCCCCCEEEE-CCEE
Confidence 56788888888999999999999 4433
No 50
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=57.81 E-value=93 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=16.8
Q ss_pred CEEEEeeCCCccCCcEEEEcCC
Q 025033 82 GQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 82 g~~~~i~~~~lv~GDii~v~~G 103 (259)
.+...+.+..+.-|-+|.++..
T Consensus 96 ~~~v~VNst~l~dG~iVki~~~ 117 (149)
T PF11694_consen 96 KEEVYVNSTALTDGMIVKIGDK 117 (149)
T ss_pred hheEEEecccccCCeEEEECCc
Confidence 3567788889998988888743
No 51
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=57.80 E-value=15 Score=27.04 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=22.8
Q ss_pred EEEECCEEEEeeCCCccCCcEEEEcCCCEE
Q 025033 77 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQV 106 (259)
Q Consensus 77 ~v~r~g~~~~i~~~~lv~GDii~v~~G~~i 106 (259)
+|.-||... -++.++++||++.+.-|...
T Consensus 35 rV~vNG~~a-KpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 35 RVKVNGQRA-KPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred eEEECCEEc-ccccccCCCCEEEEEeCCcE
Confidence 344566655 58999999999999988764
No 52
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=53.00 E-value=33 Score=24.08 Aligned_cols=8 Identities=38% Similarity=0.219 Sum_probs=0.0
Q ss_pred cCCcEEEE
Q 025033 93 VVGDIVHL 100 (259)
Q Consensus 93 v~GDii~v 100 (259)
+|||-|..
T Consensus 38 k~Gd~VvT 45 (82)
T PF02699_consen 38 KPGDEVVT 45 (82)
T ss_dssp --------
T ss_pred CCCCEEEE
Confidence 33333333
No 53
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=52.69 E-value=30 Score=32.78 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=42.4
Q ss_pred chhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEe-----ccEEEEecce----------eEEeccccCCC
Q 025033 69 REKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISGYS----------LLIDESSLSGE 128 (259)
Q Consensus 69 ~~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP-----~D~~vl~g~~----------l~vdes~lTGE 128 (259)
++..+.++..+-.--+-.++.+-.+|||+|.-..|.+|= |.||++=.+. ..+|-+.|||-
T Consensus 279 ~l~~~vnV~~i~~~~EN~is~~A~rPgDVi~s~~GkTVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA 353 (468)
T cd00433 279 ELKLPVNVVGVLPLAENMISGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGA 353 (468)
T ss_pred HcCCCceEEEEEEeeecCCCCCCCCCCCEeEeCCCcEEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHH
Confidence 334444555555555667889999999999999998876 4677765433 35788888875
No 54
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=51.72 E-value=19 Score=33.41 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCCccCCcEEEEcCCCEEe--ccEEEEecc
Q 025033 89 IYDLVVGDIVHLSIGDQVP--ADGIFISGY 116 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP--~D~~vl~g~ 116 (259)
...+.+|.-+.|..|..+| ||+++-.-.
T Consensus 87 ~~~~~~g~av~I~TGa~vP~gaDaVv~~E~ 116 (411)
T PRK10680 87 HGEWPAGTCIRIMTGAPVPEGCEAVVMQEQ 116 (411)
T ss_pred CcccCCCeEEEEecCCcCCCCCCEEEEEEE
Confidence 4578899999999999999 788886544
No 55
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=50.18 E-value=20 Score=33.09 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.5
Q ss_pred CCCccCCcEEEEcCCCEEe--ccEEEEecceeEEe
Q 025033 89 IYDLVVGDIVHLSIGDQVP--ADGIFISGYSLLID 121 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP--~D~~vl~g~~l~vd 121 (259)
...+.+|..+.|..|..+| ||+++-.-+. .++
T Consensus 78 ~~~~~~g~av~I~TGa~lP~gaDaVV~~E~~-~~~ 111 (394)
T cd00887 78 DGPLGPGEAVRIMTGAPLPEGADAVVMVEDT-EEE 111 (394)
T ss_pred CcccCCCeEEEEcCCCCCCCCCCEEEEEEeE-EEC
Confidence 3478899999999999999 8998875543 343
No 56
>PRK11479 hypothetical protein; Provisional
Probab=45.27 E-value=5.1 Score=35.04 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.7
Q ss_pred EEeeCCCccCCcEEEEcCCCE
Q 025033 85 QKVSIYDLVVGDIVHLSIGDQ 105 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G~~ 105 (259)
+.|+.++++|||++..+.+..
T Consensus 58 ~~Vs~~~LqpGDLVFfst~t~ 78 (274)
T PRK11479 58 KEITAPDLKPGDLLFSSSLGV 78 (274)
T ss_pred cccChhhCCCCCEEEEecCCc
Confidence 378999999999999987643
No 57
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=44.04 E-value=35 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.1
Q ss_pred eEEeccccCCCCcceeecCCCCEEEecceEe
Q 025033 118 LLIDESSLSGESEPMYICDENPFLLAGTKVQ 148 (259)
Q Consensus 118 l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 148 (259)
+-+|+..|.||-.-...+.||. |-+|+.+.
T Consensus 70 iGidTv~l~g~gF~~~vk~Gd~-V~~G~~l~ 99 (124)
T cd00210 70 IGIDTVKLNGEGFTSHVEEGQR-VKQGDKLL 99 (124)
T ss_pred eeeeeeecCCCceEEEecCCCE-EcCCCEEE
Confidence 3468888888888777778887 77777765
No 58
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=44.02 E-value=18 Score=38.35 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=26.9
Q ss_pred ceEEEEECCEEEEeeCCCccCCcEEEEcCCC
Q 025033 74 IFIQVTRDGQRQKVSIYDLVVGDIVHLSIGD 104 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~ 104 (259)
..+.++++|+|.+..+.||+|||.+.+...+
T Consensus 988 HPVLv~~~Gk~i~K~A~dlK~GD~vvIPK~~ 1018 (1627)
T PRK14715 988 HPVMVYENGKFIKKRAMDVKEGDLMLIPKLD 1018 (1627)
T ss_pred CceEEeccCccceeehhhcCcCceeeccccc
Confidence 3567788999999999999999999998764
No 59
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=43.96 E-value=50 Score=31.44 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=39.5
Q ss_pred hhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEe-----ccEEEEecce----------eEEeccccCCC
Q 025033 70 EKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISGYS----------LLIDESSLSGE 128 (259)
Q Consensus 70 ~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP-----~D~~vl~g~~----------l~vdes~lTGE 128 (259)
+..+.++..+-.--+-.++..-.+|||+|.-..|..|= |.|+++=.+. ..+|-+.|||-
T Consensus 294 lkl~vnV~~v~~l~ENm~~~~A~rPgDVi~~~~GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa 367 (483)
T PRK00913 294 LKLPVNVVGVVAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGA 367 (483)
T ss_pred cCCCceEEEEEEeeccCCCCCCCCCCCEEEECCCcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHH
Confidence 33333444444445567889999999999999998775 4566664332 35777777765
No 60
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=43.19 E-value=2.9e+02 Score=29.15 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=11.1
Q ss_pred CcEEEEcCCCEEeccEEEEe
Q 025033 95 GDIVHLSIGDQVPADGIFIS 114 (259)
Q Consensus 95 GDii~v~~G~~iP~D~~vl~ 114 (259)
|....+...|.+|-|.+.++
T Consensus 237 g~~~~I~s~eLvpGDiv~l~ 256 (1054)
T TIGR01657 237 GKWVTIASDELVPGDIVSIP 256 (1054)
T ss_pred CEEEEEEcccCCCCCEEEEe
Confidence 45555555555555555554
No 61
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=43.17 E-value=52 Score=22.88 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEECCEEEEee---CCCccCCcEEEEcCCC
Q 025033 75 FIQVTRDGQRQKVS---IYDLVVGDIVHLSIGD 104 (259)
Q Consensus 75 ~~~v~r~g~~~~i~---~~~lv~GDii~v~~G~ 104 (259)
.+.|-.+|..++++ ..+..|||-+++..|-
T Consensus 16 ~A~v~~~G~~~~v~l~lv~~~~vGD~VLVH~G~ 48 (76)
T TIGR00074 16 IALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGF 48 (76)
T ss_pred EEEEEcCCeEEEEEEEeeCCCCCCCEEEEecCh
Confidence 45665667666655 4578999999999984
No 62
>PRK04980 hypothetical protein; Provisional
Probab=42.14 E-value=47 Score=24.54 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=33.5
Q ss_pred CCCccCCcEEEEc--CCCEEeccEEEEecceeEEec-----cccCCCCcceeecC
Q 025033 89 IYDLVVGDIVHLS--IGDQVPADGIFISGYSLLIDE-----SSLSGESEPMYICD 136 (259)
Q Consensus 89 ~~~lv~GDii~v~--~G~~iP~D~~vl~g~~l~vde-----s~lTGEs~pv~k~~ 136 (259)
....+|||.+.|. .+.+.-|+..+++=+...+|| +...|+|.+.-|..
T Consensus 29 e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLte~hA~qEg~sL~elk~~ 83 (102)
T PRK04980 29 ESHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELNEKHAEQENMTLPELKQV 83 (102)
T ss_pred ccCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCCHHHHHHhCCCHHHHHHH
Confidence 4579999999997 777888999998855422322 34557776665553
No 63
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=41.90 E-value=32 Score=32.06 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCCccCCcEEEEcCCCEEe--ccEEEEecc
Q 025033 89 IYDLVVGDIVHLSIGDQVP--ADGIFISGY 116 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP--~D~~vl~g~ 116 (259)
...+.+|..+.+..|..+| ||+++..-.
T Consensus 103 ~~~~~~G~av~I~TGa~lP~gaDaVV~~E~ 132 (419)
T PRK14690 103 SGRVPEGMALRILTGAALPEGVDTVVLEED 132 (419)
T ss_pred CcccCCCcEEEEcCCCCCCCCCCEEEEEEE
Confidence 4468889999999999999 899987544
No 64
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=40.95 E-value=31 Score=35.33 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=27.8
Q ss_pred CceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEecc
Q 025033 73 KIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPAD 109 (259)
Q Consensus 73 ~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D 109 (259)
+...-+.+||++..+..++|++||.+.+.. .+|.+
T Consensus 168 ~H~~~v~~~g~~~~~~a~~l~~GD~i~~~~--~~~~~ 202 (858)
T PRK14898 168 YHSFVTRKDNEVIPVEGSELKIGDWLPVVR--SLPAN 202 (858)
T ss_pred CCeEEEeeCCeEEEeeHHhCCCCCEEeeee--ecccc
Confidence 345667889999999999999999997765 45543
No 65
>PRK05015 aminopeptidase B; Provisional
Probab=40.68 E-value=74 Score=29.70 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=39.1
Q ss_pred eEEEEECCEEEEeeCCCccCCcEEEEcCCCEEe-----ccEEEEecce----------eEEeccccCCCCc
Q 025033 75 FIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISGYS----------LLIDESSLSGESE 130 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP-----~D~~vl~g~~----------l~vdes~lTGEs~ 130 (259)
++..+----+-.++..-.+|||||.-..|..|= |.||++=.+. +.+|-+.|||...
T Consensus 236 nV~~il~~aENmisg~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~ 306 (424)
T PRK05015 236 RVKLFLCCAENLISGNAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAK 306 (424)
T ss_pred eEEEEEEecccCCCCCCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhH
Confidence 444444445567889999999999999988765 4566654332 4688888887643
No 66
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=40.08 E-value=86 Score=26.54 Aligned_cols=65 Identities=26% Similarity=0.298 Sum_probs=41.8
Q ss_pred eeCCCccCCcEE---------EEcCCCEEec----cEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEE
Q 025033 87 VSIYDLVVGDIV---------HLSIGDQVPA----DGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVK 153 (259)
Q Consensus 87 i~~~~lv~GDii---------~v~~G~~iP~----D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~ 153 (259)
+.-++|.||+.| .|+.|+.||. ||+-+.... ..=|.---||-.=|.-....+ +.+|++..+|.+.
T Consensus 140 vskr~l~pg~~i~~~~lr~~~lV~rg~~V~~v~~~ggi~i~~~g-~aL~nga~Ge~IrVrn~~Sgk-Ivsg~V~~~G~v~ 217 (220)
T COG1261 140 VSKRTLLPGQPILASMLRQAWLVKRGQIVTVVAEGGGISITAEG-KALENGAVGEVIRVRNVSSGK-IVSGTVDGDGTVQ 217 (220)
T ss_pred HhhhccCCCCEecHHHhccceeEecCCEEEEEEeCCCEEEEEee-eEccCccccceEEEecCCCCc-eEEEEEccCCeEE
Confidence 456677788777 4677888874 555555444 344455557766555544455 8888877777654
No 67
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=40.03 E-value=44 Score=25.04 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=22.8
Q ss_pred ceEEEEECCEEEEeeCCCccCCcEEEEcC
Q 025033 74 IFIQVTRDGQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~lv~GDii~v~~ 102 (259)
.+..+.+++++..+..++|++||.+.+..
T Consensus 72 H~~~~~~~~~~~~~~a~~l~~gd~l~~~~ 100 (136)
T cd00081 72 HLLFVLEDGELKWVFASDLKPGDYVLVPV 100 (136)
T ss_pred CEEEEEeCCeEEEEEHHHCCCCCEEEEcc
Confidence 34555566677889999999999999973
No 68
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=38.08 E-value=1.9e+02 Score=30.44 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=12.0
Q ss_pred ECCEEEEeeCCCccCCcEEEEc
Q 025033 80 RDGQRQKVSIYDLVVGDIVHLS 101 (259)
Q Consensus 80 r~g~~~~i~~~~lv~GDii~v~ 101 (259)
+-|+...+...|.+|-|.+++.
T Consensus 105 ~~GDiv~l~~g~~iPaD~~ll~ 126 (1057)
T TIGR01652 105 RVGDIVKVKKDERIPADLLLLS 126 (1057)
T ss_pred cCCCEEEEcCCCcccceEEEEe
Confidence 3455555555555555555554
No 69
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=36.43 E-value=45 Score=32.64 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCccCCcEEEEcCCCEEe--ccEEEEecc
Q 025033 89 IYDLVVGDIVHLSIGDQVP--ADGIFISGY 116 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP--~D~~vl~g~ 116 (259)
...+.+|..+.|..|..+| ||+++-.-+
T Consensus 277 ~~~l~~G~avrI~TGa~iP~gaDaVV~~E~ 306 (597)
T PRK14491 277 DGTLQAGEAVRIMTGAPVPAGADTVVMREL 306 (597)
T ss_pred CcccCCCcEEEeCcCCCCCCCCCEEEEEEE
Confidence 4568889999999999999 899887544
No 70
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=36.40 E-value=46 Score=32.68 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCCccCCcEEEEcCCCEEe--ccEEEEecc
Q 025033 89 IYDLVVGDIVHLSIGDQVP--ADGIFISGY 116 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP--~D~~vl~g~ 116 (259)
...+.+|+-+.+..|..+| ||+++-.-.
T Consensus 95 ~~~~~~g~av~I~TGa~vP~gad~Vi~~E~ 124 (633)
T PRK14498 95 DVEVEPGEAVEIATGAPIPRGADAVVMVED 124 (633)
T ss_pred CcccCCCeEEEECCCCCCCCCCCEEEEEEE
Confidence 4568899999999999999 899886544
No 71
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=36.31 E-value=46 Score=21.46 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.2
Q ss_pred EEECCEEEEeeCCCccCCcEEEE
Q 025033 78 VTRDGQRQKVSIYDLVVGDIVHL 100 (259)
Q Consensus 78 v~r~g~~~~i~~~~lv~GDii~v 100 (259)
|.-||+...-+...|.+||.|.+
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 33488876677999999999976
No 72
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=35.81 E-value=42 Score=32.46 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCccCCcEEEEcCCCEEe--ccEEEEecc
Q 025033 89 IYDLVVGDIVHLSIGDQVP--ADGIFISGY 116 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP--~D~~vl~g~ 116 (259)
...+.+|.-+.|..|..+| ||.++..-.
T Consensus 88 ~~~l~~GeAv~I~TGaplP~GaDAVV~vE~ 117 (546)
T PRK14497 88 EIHIKECEAVEVDTGSMIPMGADAVIKVEN 117 (546)
T ss_pred CcccCCCceEEeccCCCCCCCCCEEEEhhh
Confidence 4578899999999999999 899987443
No 73
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=35.47 E-value=30 Score=26.53 Aligned_cols=28 Identities=32% Similarity=0.240 Sum_probs=17.2
Q ss_pred EEeeCCCccCCcEEEEcCCCEEeccEEE
Q 025033 85 QKVSIYDLVVGDIVHLSIGDQVPADGIF 112 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G~~iP~D~~v 112 (259)
..+++++|++||.+.-..|+......+-
T Consensus 70 gWv~A~~L~~GD~L~~~~G~~~~v~~i~ 97 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLTADGSWVTVTSIR 97 (130)
T ss_dssp --EEGGG--TTSEEEEE-SSEEEEE---
T ss_pred hhhhHhhCCCCCEEEcCCCCEEEEEEEE
Confidence 4678999999999999999876655543
No 74
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=35.10 E-value=72 Score=22.55 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=22.7
Q ss_pred eEEEEECCEEEEeeCC-------CccCCcEEEEcCCCE
Q 025033 75 FIQVTRDGQRQKVSIY-------DLVVGDIVHLSIGDQ 105 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~-------~lv~GDii~v~~G~~ 105 (259)
.++|-.+|..++|+.. ++.+||-+++..|--
T Consensus 19 ~A~vd~~Gv~r~V~l~Lv~~~~~~~~vGDyVLVHaGfA 56 (82)
T PRK10413 19 LAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFA 56 (82)
T ss_pred EEEEEcCCeEEEEEeeeeccCCcccccCCEEEEecchh
Confidence 4667777777777633 456899999999853
No 75
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.31 E-value=69 Score=22.69 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred CCccCCcEEEEcCCCEEeccEEEEecce
Q 025033 90 YDLVVGDIVHLSIGDQVPADGIFISGYS 117 (259)
Q Consensus 90 ~~lv~GDii~v~~G~~iP~D~~vl~g~~ 117 (259)
+++.+||.+.+.-| ++-..|+++..+.
T Consensus 19 eeV~~gd~vel~~g-rVhIpG~vv~~n~ 45 (91)
T COG4013 19 EEVDVGDYVELYFG-RVHIPGRVVHYND 45 (91)
T ss_pred hcCCCCCEEEEEEE-EEEeccEEEEeec
Confidence 47889999999888 6777788877654
No 76
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=34.28 E-value=1.1e+02 Score=23.18 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=29.5
Q ss_pred EEeccEEEEec----ce--------------eEEeccccCCCCcceeecCCCCEEEecceEe
Q 025033 105 QVPADGIFISG----YS--------------LLIDESSLSGESEPMYICDENPFLLAGTKVQ 148 (259)
Q Consensus 105 ~iP~D~~vl~g----~~--------------l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 148 (259)
.-|+||.+..- .+ +=+|+..|.||-.-...+.||. |-+|..+.
T Consensus 39 ~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L~G~gF~~~v~~Gd~-V~~G~~l~ 99 (121)
T TIGR00830 39 VAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEGQR-VKKGDPLL 99 (121)
T ss_pred EccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeecCCCceEEEecCCCE-EcCCCEEE
Confidence 56888888641 11 3467888888877777777777 77777664
No 77
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=33.18 E-value=68 Score=20.39 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=25.4
Q ss_pred eEEEE-ECCEEEEee-CCCccCCcEEEEcCCCEEe
Q 025033 75 FIQVT-RDGQRQKVS-IYDLVVGDIVHLSIGDQVP 107 (259)
Q Consensus 75 ~~~v~-r~g~~~~i~-~~~lv~GDii~v~~G~~iP 107 (259)
.+.|+ .||++..++ ..+..+||-|.+...+..+
T Consensus 7 ~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~ 41 (56)
T PF12791_consen 7 YAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIIN 41 (56)
T ss_pred EEEEEcCCCcEEEEeCCCCCcccCEEEEechhhcc
Confidence 45554 678888887 4479999999998887654
No 78
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=33.06 E-value=5.6e+02 Score=26.38 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhC----CceEE-E----EECCEEEEeeCCCccCCcEEEEcCCCEEeccEEE
Q 025033 42 IILSILLVVMVTAISDYKQSLQFRDLDREKK----KIFIQ-V----TRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIF 112 (259)
Q Consensus 42 i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~-v----~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~v 112 (259)
++++.....++..+...++-+++.++..... +.+.. + +.-|+...+..-|.+|-|.++++..+ .-+|=-.
T Consensus 89 ~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~-l~VDES~ 167 (884)
T TIGR01522 89 AILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVD-LSIDESN 167 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCc-eEEEccc
Confidence 3444455666667777788888887744321 11222 2 23588899999999999999987532 3367777
Q ss_pred Eeccee
Q 025033 113 ISGYSL 118 (259)
Q Consensus 113 l~g~~l 118 (259)
+.|++.
T Consensus 168 LTGES~ 173 (884)
T TIGR01522 168 LTGETT 173 (884)
T ss_pred ccCCCc
Confidence 777763
No 79
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=32.99 E-value=1.8e+02 Score=20.54 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhchhC
Q 025033 53 TAISDYKQSLQFRDLDREKK 72 (259)
Q Consensus 53 ~~~~~~~~~~~~~~l~~~~~ 72 (259)
-++.-+.++++.++..++.+
T Consensus 17 yf~~~rpqkK~~k~~~~m~~ 36 (84)
T TIGR00739 17 YFLIIRPQRKRRKAHKKLIE 36 (84)
T ss_pred HHheechHHHHHHHHHHHHH
Confidence 33443455566666666654
No 80
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=32.41 E-value=1.2e+02 Score=31.34 Aligned_cols=46 Identities=46% Similarity=0.844 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhHhhccCCccHHHHHHHHHHhhhhhhhhhhhcccc
Q 025033 190 VAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIP 235 (259)
Q Consensus 190 ~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~il~ia~P~al~l~~~P 235 (259)
+.++++++.+++.++...++.+..|++++.+....+|+.-...++|
T Consensus 894 ~~l~~~~~~~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~ 939 (941)
T TIGR01517 894 FGFQVIIVEFGGSFFSTVSLSIEQWIGCVLLGMLSLIFGVLLRLIP 939 (941)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444455555566667777777777766555666655555444
No 81
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=32.18 E-value=96 Score=28.50 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=26.1
Q ss_pred ceEEEEECCEEEEeeCCC------------ccCCcEEEEcCC--CEEeccEEEE
Q 025033 74 IFIQVTRDGQRQKVSIYD------------LVVGDIVHLSIG--DQVPADGIFI 113 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~------------lv~GDii~v~~G--~~iP~D~~vl 113 (259)
..+.+.|+|+...++..+ |++||+|.|... ..+-+-|.+-
T Consensus 211 ~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~~~~~v~V~GeV~ 264 (379)
T PRK15078 211 RNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEVK 264 (379)
T ss_pred ceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCCCCcEEEEeeecc
Confidence 368899999988876432 677888777652 2444444443
No 82
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=31.34 E-value=59 Score=30.21 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=24.9
Q ss_pred eCCCccCCcEEEEcCCCEEe--ccEEEEecc
Q 025033 88 SIYDLVVGDIVHLSIGDQVP--ADGIFISGY 116 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP--~D~~vl~g~ 116 (259)
+..++.+|..++|..|..+| ||.++..-.
T Consensus 85 ~~~~v~~geavrI~TGA~lP~gaDaVV~~E~ 115 (404)
T COG0303 85 PDLEVGPGEAVRIMTGAPLPEGADAVVMVED 115 (404)
T ss_pred CCcccCCCeEEEEeCCCCCCCCCCEEEEEEE
Confidence 35699999999999999999 899986544
No 83
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=30.71 E-value=36 Score=21.94 Aligned_cols=12 Identities=42% Similarity=0.817 Sum_probs=10.4
Q ss_pred cCCcEEEEcCCC
Q 025033 93 VVGDIVHLSIGD 104 (259)
Q Consensus 93 v~GDii~v~~G~ 104 (259)
.+||+|.++.|-
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 589999999884
No 84
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=30.66 E-value=86 Score=22.59 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=22.0
Q ss_pred eEEEEECCEEEEeeCC---------CccCCcEEEEcCCC
Q 025033 75 FIQVTRDGQRQKVSIY---------DLVVGDIVHLSIGD 104 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~---------~lv~GDii~v~~G~ 104 (259)
.++|-..|..++|+.. +..+||-++|..|-
T Consensus 16 ~A~vd~~Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHaGf 54 (90)
T PRK10409 16 QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGF 54 (90)
T ss_pred eEEEEcCCeEEEEEEeeecccCCCCccCCCCEEEEecCh
Confidence 4666666776666533 46899999999984
No 85
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=30.62 E-value=1e+02 Score=26.08 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=15.7
Q ss_pred ceEEEEECCEEEEeeCCCccCCcEEEEcCCCEE
Q 025033 74 IFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQV 106 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~i 106 (259)
..++|..||..+.+ .+|..|+++|||.|
T Consensus 137 ~~v~V~~DG~~~t~-----~aG~~l~L~PGESi 164 (225)
T PF07385_consen 137 TDVTVPVDGIRRTV-----PAGTQLRLNPGESI 164 (225)
T ss_dssp S-EEEEETTEEEEE------TT-EEEE-TT-EE
T ss_pred CCeEEecCCcEEEe-----cCCceEEeCCCCeE
Confidence 35677777766654 45777777777766
No 86
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=30.43 E-value=73 Score=22.01 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.0
Q ss_pred EEEEECCEEEEeeCCCccCCcEEEEcC
Q 025033 76 IQVTRDGQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 76 ~~v~r~g~~~~i~~~~lv~GDii~v~~ 102 (259)
-.|..||+.+.-.-..|..||+|.+..
T Consensus 37 g~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 37 GEVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred CeEEECCeeeeccCCEeecCCEEEECC
Confidence 367889998888899999999998864
No 87
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=30.34 E-value=28 Score=26.83 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=14.6
Q ss_pred EEeeCCCccCCcEEEEcC
Q 025033 85 QKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~ 102 (259)
+.|+.++++|||+|..+.
T Consensus 70 ~~v~~~~~qpGDlvff~~ 87 (134)
T TIGR02219 70 VPVPCDAAQPGDVLVFRW 87 (134)
T ss_pred cccchhcCCCCCEEEEee
Confidence 356778999999999963
No 88
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=30.29 E-value=35 Score=26.18 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.4
Q ss_pred CCccCCcEEEEcCC
Q 025033 90 YDLVVGDIVHLSIG 103 (259)
Q Consensus 90 ~~lv~GDii~v~~G 103 (259)
..++|||||++..|
T Consensus 60 ~~~~PGDIirLt~G 73 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGG 73 (134)
T ss_pred cccCCccEEEeccc
Confidence 56999999999887
No 89
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=30.25 E-value=3.5e+02 Score=27.79 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=12.8
Q ss_pred CcEEEEcCCCEEeccEEEEe
Q 025033 95 GDIVHLSIGDQVPADGIFIS 114 (259)
Q Consensus 95 GDii~v~~G~~iP~D~~vl~ 114 (259)
|....+...|.+|-|.++++
T Consensus 139 g~~~~I~~~eLv~GDiV~l~ 158 (867)
T TIGR01524 139 GSMDEVPIDALVPGDLIELA 158 (867)
T ss_pred CeEEEEEhhcCCCCCEEEEC
Confidence 55566666666666666665
No 90
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=29.99 E-value=46 Score=27.87 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=27.1
Q ss_pred EEEEECCEEEEeeCCCccCCcEEEEcCCCEEe
Q 025033 76 IQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP 107 (259)
Q Consensus 76 ~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP 107 (259)
=.|.-||+.+.+|+..+.|||.+.|+.-+.-|
T Consensus 119 GHI~VnGk~V~iPSy~V~~gdei~V~~k~~s~ 150 (205)
T COG0522 119 GHILVNGKRVNIPSYLVSPGDEISVREKSKSP 150 (205)
T ss_pred ceEEECCEEeccCcEEecCCCEEEeeecccch
Confidence 35777999999999999999999998765544
No 91
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=29.87 E-value=64 Score=16.85 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=14.7
Q ss_pred ccCCcEEEEcCCCEEeccEEEE
Q 025033 92 LVVGDIVHLSIGDQVPADGIFI 113 (259)
Q Consensus 92 lv~GDii~v~~G~~iP~D~~vl 113 (259)
+.+||.+.+..|..----|.++
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~ 23 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVL 23 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEE
Confidence 5789999988876544444443
No 92
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=29.60 E-value=97 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=20.3
Q ss_pred ceEEEEECCEEEEeeCCC----------ccCCcEEEEcC
Q 025033 74 IFIQVTRDGQRQKVSIYD----------LVVGDIVHLSI 102 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~----------lv~GDii~v~~ 102 (259)
..+++.|+++...++..+ |.+||+|.|..
T Consensus 198 ~~V~l~R~~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~ 236 (355)
T PRK15175 198 MEVHVTRQQHYFTARLSDIYQYPGLDIALQPDDRITLRQ 236 (355)
T ss_pred cEEEEEECCEEEEEEHHHHhhCCcCCcEeCCCCEEEEcc
Confidence 368899999887776555 45666666654
No 93
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=29.59 E-value=51 Score=31.36 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=43.5
Q ss_pred hCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEec-----cEEEEecce----------eEEeccccCCCCc
Q 025033 71 KKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPA-----DGIFISGYS----------LLIDESSLSGESE 130 (259)
Q Consensus 71 ~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~-----D~~vl~g~~----------l~vdes~lTGEs~ 130 (259)
..+..+..+-...+-.++..-.+||||+.-..|..|=+ .||++=.++ +.||-+.|||.-+
T Consensus 294 ~l~vnv~~vl~~~ENm~~g~A~rPGDVits~~GkTVEV~NTDAEGRLVLADaLtYA~~~kp~~iID~ATLTGA~~ 368 (485)
T COG0260 294 KLPVNVVGVLPAVENMPSGNAYRPGDVITSMNGKTVEVLNTDAEGRLVLADALTYAEELKPDLIIDVATLTGAAV 368 (485)
T ss_pred CCCceEEEEEeeeccCCCCCCCCCCCeEEecCCcEEEEcccCccHHHHHHHHHHHHHHcCCCEEEEehhhHhHHH
Confidence 33345666666777788899999999999999988763 455543222 5799999998743
No 94
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=29.02 E-value=1.5e+02 Score=21.67 Aligned_cols=50 Identities=30% Similarity=0.337 Sum_probs=35.8
Q ss_pred CCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceE-ecceEEEEEEEeCcc
Q 025033 89 IYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKV-QDGSVKMLVTTVGMR 162 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~-~~g~~~~~V~~tg~~ 162 (259)
.++-.+||.|.+ .+|.|.-.| +|-.+..|.. |+++ ..|.+..+.++.|..
T Consensus 30 l~ey~~Gd~V~I------------------~IdpSv~kG--mPh~rf~G~T----G~Vvg~~g~ay~V~v~~G~k 80 (98)
T COG2139 30 LQEYKVGDKVHI------------------DIDPSVHKG--MPHPRFQGKT----GTVVGVRGRAYKVEVYDGNK 80 (98)
T ss_pred HhhccCCCEEEE------------------EeCcccccC--CCCccccCcc----eEEEeccCCEEEEEEecCCc
Confidence 456667777643 578888888 7777777765 6655 468888888888765
No 95
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=28.10 E-value=63 Score=21.23 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=23.7
Q ss_pred ccCCcEEEEcCCCEEe-ccEEEEecceeEEe
Q 025033 92 LVVGDIVHLSIGDQVP-ADGIFISGYSLLID 121 (259)
Q Consensus 92 lv~GDii~v~~G~~iP-~D~~vl~g~~l~vd 121 (259)
|-|+||+....+-.+| -||.++.+-. ..|
T Consensus 5 lgpa~ile~nsnG~~P~tdg~liT~lt-fL~ 34 (64)
T PF06820_consen 5 LGPADILESNSNGWFPETDGRLITGLT-FLD 34 (64)
T ss_pred cCchheeeecCCccccCCCcceEeeeE-Eec
Confidence 5689999999988999 6889988876 344
No 96
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=28.06 E-value=3.5e+02 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=23.8
Q ss_pred eCCCccCCcEEEEcCCCEEeccEEEEecc
Q 025033 88 SIYDLVVGDIVHLSIGDQVPADGIFISGY 116 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP~D~~vl~g~ 116 (259)
+..=++.|-...+...|.+|-|...++..
T Consensus 251 ~V~V~R~g~~~ti~S~eLVPGDil~i~~~ 279 (1140)
T KOG0208|consen 251 PVTVIRDGFWETVDSSELVPGDILYIPPP 279 (1140)
T ss_pred eEEEEECCEEEEEeccccccccEEEECCC
Confidence 33446679999999999999999999863
No 97
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=27.72 E-value=24 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=12.2
Q ss_pred ECCEEEEeeCCCccCCcEEEEc
Q 025033 80 RDGQRQKVSIYDLVVGDIVHLS 101 (259)
Q Consensus 80 r~g~~~~i~~~~lv~GDii~v~ 101 (259)
|..-...+++++|.+||++.+.
T Consensus 54 RpRARt~l~w~~L~VG~~VMvN 75 (85)
T PF12148_consen 54 RPRARTILKWDELKVGQVVMVN 75 (85)
T ss_dssp EE---SBE-GGG--TT-EEEEE
T ss_pred cceeeEeccHHhCCcccEEEEe
Confidence 3444567899999999999985
No 98
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=27.20 E-value=71 Score=24.81 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEECCEEEEeeCCCccCCcEEEEcCCCEE
Q 025033 78 VTRDGQRQKVSIYDLVVGDIVHLSIGDQV 106 (259)
Q Consensus 78 v~r~g~~~~i~~~~lv~GDii~v~~G~~i 106 (259)
|.-||.. .-++.++.+||.|.|..|...
T Consensus 36 V~vnG~~-~Kps~~V~~gd~l~v~~~~~~ 63 (133)
T PRK10348 36 VHYNGQR-SKPSKIVELNATLTLRQGNDE 63 (133)
T ss_pred EEECCEE-CCCCCccCCCCEEEEEECCEE
Confidence 3347877 678999999999999888643
No 99
>smart00532 LIGANc Ligase N family.
Probab=26.90 E-value=29 Score=32.62 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=20.3
Q ss_pred eCCCccCCcEEEE-cCCCEEec-cEEEE
Q 025033 88 SIYDLVVGDIVHL-SIGDQVPA-DGIFI 113 (259)
Q Consensus 88 ~~~~lv~GDii~v-~~G~~iP~-D~~vl 113 (259)
...+|.+||.|.| ++||.||. ++++.
T Consensus 359 ~~~~i~iGd~V~V~raGdVIP~I~~vv~ 386 (441)
T smart00532 359 EEKDIRIGDTVVVRKAGDVIPKVVGVVK 386 (441)
T ss_pred HHcCCCCCCEEEEEECCCcCcceeeccc
Confidence 5678999999998 58999994 44443
No 100
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=26.42 E-value=3.6e+02 Score=22.07 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchh------CCceEEEE----ECCEEEEeeCCCccCCcEEEEcCC
Q 025033 43 ILSILLVVMVTAISDYKQSLQFRDLDREK------KKIFIQVT----RDGQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 43 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~v~----r~g~~~~i~~~~lv~GDii~v~~G 103 (259)
+++-.+.......+..+..++++++.... +.....+- +-|+...+...|.+|-|.++++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g 76 (230)
T PF00122_consen 6 ILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESG 76 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCccceecc
Confidence 34444456667778888877776644332 22122222 568899999999999999999944
No 101
>PLN03190 aminophospholipid translocase; Provisional
Probab=25.72 E-value=2.4e+02 Score=30.14 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=49.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hCCceEEE---
Q 025033 4 WEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDRE--KKKIFIQV--- 78 (259)
Q Consensus 4 ~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~v--- 78 (259)
++++.|.++++..+...+--+-........... ++++++..+...++.+.++++++....-... .+.....+
T Consensus 111 F~r~aN~YFL~I~ilq~ip~~s~~~~~t~~~PL---~~vl~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~ 187 (1178)
T PLN03190 111 FHRVAYIYFLVIAVLNQLPQLAVFGRGASILPL---AFVLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWK 187 (1178)
T ss_pred HHhhhhHHHHHHHHHHhCCCcccCCcchHHHHH---HHHHHHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHH
Confidence 567777888877777654211000000000010 2222233344455555555555554321111 11111222
Q ss_pred -EECCEEEEeeCCCccCCcEEEEc
Q 025033 79 -TRDGQRQKVSIYDLVVGDIVHLS 101 (259)
Q Consensus 79 -~r~g~~~~i~~~~lv~GDii~v~ 101 (259)
++-|+...+...|..|-|.+++.
T Consensus 188 ~i~vGDiv~v~~ge~iPaD~~ll~ 211 (1178)
T PLN03190 188 DIRVGEIIKIQANDTLPCDMVLLS 211 (1178)
T ss_pred HCCCCCEEEECCCCEeeeeEEEEe
Confidence 35689999999999999999997
No 102
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=25.69 E-value=76 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEEECCEEEEeeCCCccCCcEEEEcC
Q 025033 77 QVTRDGQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 77 ~v~r~g~~~~i~~~~lv~GDii~v~~ 102 (259)
.|.-||+....++..+.+||.|.+..
T Consensus 115 ~V~VNGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 115 HILVNGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred cEEECCEEecCccccCCCCCEEEEcc
Confidence 35558998889999999999999864
No 103
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=25.28 E-value=48 Score=27.38 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.5
Q ss_pred EEeeCCCccCCcEEEEcCCC
Q 025033 85 QKVSIYDLVVGDIVHLSIGD 104 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G~ 104 (259)
+.|+.++++|||+|..+.|.
T Consensus 122 ~~V~~~~lqpGDLVfF~~~~ 141 (190)
T PRK10838 122 KSVSRSKLRTGDLVLFRAGS 141 (190)
T ss_pred cCcccCCCCCCcEEEECCCC
Confidence 45678899999999998664
No 104
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=24.83 E-value=70 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=22.2
Q ss_pred EEEECCEEEEeeCCCccCCcEEEEcCC
Q 025033 77 QVTRDGQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 77 ~v~r~g~~~~i~~~~lv~GDii~v~~G 103 (259)
.|.-||+....++..+.+||+|.+..-
T Consensus 116 ~V~VNgk~v~~ps~~V~~GD~I~V~~~ 142 (200)
T TIGR01017 116 HILVNGKKVDIPSYQVRPGDIISIKEK 142 (200)
T ss_pred CEEECCEEeCCCCCCCCCCCEEEEeeC
Confidence 355688888899999999999998743
No 105
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=24.79 E-value=85 Score=26.13 Aligned_cols=27 Identities=15% Similarity=0.452 Sum_probs=22.9
Q ss_pred EEEECCEEEEeeCCCccCCcEEEEcCC
Q 025033 77 QVTRDGQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 77 ~v~r~g~~~~i~~~~lv~GDii~v~~G 103 (259)
.|.-||+....++..+.+||+|.+...
T Consensus 119 ~V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 119 HILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred cEEECCEEECCCCcCCCCCCEEEECCc
Confidence 456688888889999999999999864
No 106
>PRK06033 hypothetical protein; Validated
Probab=24.64 E-value=31 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=16.1
Q ss_pred EeeCCCccCCcEEEEcCCCEEeccE
Q 025033 86 KVSIYDLVVGDIVHLSIGDQVPADG 110 (259)
Q Consensus 86 ~i~~~~lv~GDii~v~~G~~iP~D~ 110 (259)
+....++...|++.+++||.+|.|-
T Consensus 14 ~Lg~~~i~l~dlL~L~~GDVI~L~~ 38 (83)
T PRK06033 14 VLGRSSMPIHQVLRMGRGAVIPLDA 38 (83)
T ss_pred EEecccccHHHHhCCCCCCEEEeCC
Confidence 3455666667777777777776553
No 107
>PRK14701 reverse gyrase; Provisional
Probab=24.53 E-value=66 Score=35.48 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=28.2
Q ss_pred ceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEe
Q 025033 74 IFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP 107 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP 107 (259)
..+.+.+||+...++..+|++||.|.+.....+|
T Consensus 960 H~~lv~~~g~~~~~~a~~lk~gD~vav~~~~~~~ 993 (1638)
T PRK14701 960 HGLLVMRDGKLGWVSAKNIREGDYVAFAFNTGVE 993 (1638)
T ss_pred ceEEeecCCceeeEEHHHCCcCCEEEecccCCCC
Confidence 3566778999999999999999999998665444
No 108
>PRK04132 replication factor C small subunit; Provisional
Probab=24.52 E-value=73 Score=32.59 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=22.8
Q ss_pred eEEEE-ECCEEEEeeCCCccCCcEEEEcC
Q 025033 75 FIQVT-RDGQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 75 ~~~v~-r~g~~~~i~~~~lv~GDii~v~~ 102 (259)
+..+. +||+...++..+|.+||.|.+..
T Consensus 135 p~lv~~~~g~~~W~~a~eL~~GD~vavpr 163 (846)
T PRK04132 135 PLLVNRKNGEIKWVKAEELKPGDKLAIPR 163 (846)
T ss_pred eEEEeccCCceeeEEHhHcCCCCEEEecc
Confidence 44444 57888899999999999999874
No 109
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=24.31 E-value=55 Score=19.86 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.4
Q ss_pred EEECCEEEEeeCCCccCCcEE
Q 025033 78 VTRDGQRQKVSIYDLVVGDIV 98 (259)
Q Consensus 78 v~r~g~~~~i~~~~lv~GDii 98 (259)
|.-||+...=+...+.+||+|
T Consensus 28 V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 28 VKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp EEETTEEESSTTSBESTTEEE
T ss_pred EEECCEEEcCCCCCCCCcCCC
Confidence 556888888789999999986
No 110
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.28 E-value=72 Score=23.50 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=18.1
Q ss_pred CCCccCCcEEEEcCCCEEeccEEEEe
Q 025033 89 IYDLVVGDIVHLSIGDQVPADGIFIS 114 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP~D~~vl~ 114 (259)
-+++.|||.|.+.. +.+|+.-+=+.
T Consensus 31 rr~ik~GD~IiF~~-~~l~v~V~~vr 55 (111)
T COG4043 31 RRQIKPGDKIIFNG-DKLKVEVIDVR 55 (111)
T ss_pred hcCCCCCCEEEEcC-CeeEEEEEEEe
Confidence 35789999999976 57776554443
No 111
>PRK06788 flagellar motor switch protein; Validated
Probab=23.62 E-value=30 Score=26.32 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=40.2
Q ss_pred EEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEec-ceEEEEEEEeCccc
Q 025033 85 QKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQD-GSVKMLVTTVGMRT 163 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~-g~~~~~V~~tg~~t 163 (259)
.++...++.++|++.++.||.||.|-..-+ |+.-..++...|.|..... +..-++++....+-
T Consensus 40 aeLG~t~ltl~DlL~L~vGDVI~Ldk~~~d----------------pv~v~Vng~~~f~G~~Gv~~~~~AVrItei~~~~ 103 (119)
T PRK06788 40 VKLGKASITLGDVKQLKVGDVLEVEKNLGH----------------KVDVYLSNMKVGIGEAIVMDEKFGIIISEIEADK 103 (119)
T ss_pred EEEecceecHHHHhCCCCCCEEEeCCcCCC----------------CEEEEECCEEEEEEEEEEECCEEEEEEEEecChH
Confidence 456677888888888888888887654322 2222333334777776654 45556777776654
Q ss_pred cc
Q 025033 164 EW 165 (259)
Q Consensus 164 ~~ 165 (259)
..
T Consensus 104 ~~ 105 (119)
T PRK06788 104 KQ 105 (119)
T ss_pred HH
Confidence 33
No 112
>PRK08433 flagellar motor switch protein; Validated
Probab=23.13 E-value=34 Score=25.65 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=17.9
Q ss_pred EEeeCCCccCCcEEEEcCCCEEeccE
Q 025033 85 QKVSIYDLVVGDIVHLSIGDQVPADG 110 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G~~iP~D~ 110 (259)
..+...++...|++-+++||.+|.|-
T Consensus 38 v~LG~t~itl~dlL~Lq~GDVI~Ld~ 63 (111)
T PRK08433 38 AELGTTQISLLEILKFEKGSVIDLEK 63 (111)
T ss_pred EEEecccccHHHHhCCCCCCEEEeCC
Confidence 44556677777777777777777654
No 113
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=23.00 E-value=76 Score=28.72 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=19.6
Q ss_pred eEEEEECCEEEEeeCCCccCCcEEEEcCC
Q 025033 75 FIQVTRDGQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~~lv~GDii~v~~G 103 (259)
.+++.+++. ..++..+|+|||-+++...
T Consensus 300 tIrlv~~dG-~~vsVt~Lk~GD~VL~~~~ 327 (344)
T PRK02290 300 TIRLVTPDG-KPVSVVDLKPGDEVLGYLE 327 (344)
T ss_pred EEEEECCCC-CEeeeeecCCCCEEEEEec
Confidence 444444332 3788999999999998653
No 114
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=22.89 E-value=38 Score=33.62 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=20.0
Q ss_pred eCCCccCCcEEEE-cCCCEEe-ccEEEE
Q 025033 88 SIYDLVVGDIVHL-SIGDQVP-ADGIFI 113 (259)
Q Consensus 88 ~~~~lv~GDii~v-~~G~~iP-~D~~vl 113 (259)
...+|.+||.|.| ++||.|| .++++.
T Consensus 361 ~~~di~iGD~V~V~raGdVIP~I~~v~~ 388 (669)
T PRK14350 361 DSIGLNVGDVVKISRRGDVIPAVELVIE 388 (669)
T ss_pred HHcCCCCCCEEEEEecCCCCCceeeecc
Confidence 4568888999998 5899999 455444
No 115
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=22.53 E-value=2.5e+02 Score=22.71 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=40.9
Q ss_pred CCcEEEEcCCC---EEeccEEEEec----ce--------------eEEeccccCCCCcceeecCCCCEEEecceEe
Q 025033 94 VGDIVHLSIGD---QVPADGIFISG----YS--------------LLIDESSLSGESEPMYICDENPFLLAGTKVQ 148 (259)
Q Consensus 94 ~GDii~v~~G~---~iP~D~~vl~g----~~--------------l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 148 (259)
.||=+-+.|-+ .-|+||.+..- .+ +=+|+-.|.||-.-...+.||+ |-+|+.+.
T Consensus 47 mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~Gd~-Vk~G~~L~ 121 (169)
T PRK09439 47 VGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQR-VKVGDPII 121 (169)
T ss_pred ccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCCCE-EeCCCEEE
Confidence 37777776544 56899998641 11 4579999999988888889998 99999886
No 116
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=22.47 E-value=50 Score=32.06 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=19.2
Q ss_pred eCCCccCCcEEEE-cCCCEEec-cEEEE
Q 025033 88 SIYDLVVGDIVHL-SIGDQVPA-DGIFI 113 (259)
Q Consensus 88 ~~~~lv~GDii~v-~~G~~iP~-D~~vl 113 (259)
.-.+|.+||.|.| ++||.||. .+++.
T Consensus 356 ~~~~I~iGD~V~V~raGdVIP~I~~vv~ 383 (562)
T PRK08097 356 QQWDIAPGDQVLVSLAGQGIPRLDKVVW 383 (562)
T ss_pred HHcCCCCCCEEEEEecCCCCcceeeeec
Confidence 3567889998877 68999995 44443
No 117
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=22.36 E-value=1.8e+02 Score=19.25 Aligned_cols=26 Identities=19% Similarity=0.315 Sum_probs=13.8
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHh
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVG 26 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~ 26 (259)
|+|.+.|.++...+.=+...++...+
T Consensus 13 qlfvdafteflvsivdiiiflailfg 38 (73)
T PF07069_consen 13 QLFVDAFTEFLVSIVDIIIFLAILFG 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777766554444444444444
No 118
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=22.31 E-value=1.4e+02 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCccCCcEEEEcCCCEEe--ccEEEEecce
Q 025033 90 YDLVVGDIVHLSIGDQVP--ADGIFISGYS 117 (259)
Q Consensus 90 ~~lv~GDii~v~~G~~iP--~D~~vl~g~~ 117 (259)
..+.+|.-+.|..|..+| ||+++-.-..
T Consensus 86 ~~l~~G~avrI~TGa~iP~GaDaVI~~E~~ 115 (659)
T PLN02699 86 VTLTPGTVAYVTTGGPIPDGADAVVQVEDT 115 (659)
T ss_pred cccCCCcEEEEccCCCCCCCCCEEEEEEEE
Confidence 468889999999999999 8999876544
No 119
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=22.18 E-value=69 Score=21.74 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=9.8
Q ss_pred EEecceEec-ceEEEEEEE
Q 025033 141 LLAGTKVQD-GSVKMLVTT 158 (259)
Q Consensus 141 v~~Gt~~~~-g~~~~~V~~ 158 (259)
+|.|..... |..-++++.
T Consensus 54 ~~~g~lg~~~~~~av~I~~ 72 (77)
T PF01052_consen 54 IFRGELGRVNGRLAVRITE 72 (77)
T ss_dssp EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEE
Confidence 677776644 444445444
No 120
>PF13403 Hint_2: Hint domain
Probab=21.97 E-value=82 Score=24.68 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=21.1
Q ss_pred EeeCCCccCCcEEEEcCCCEEeccEE
Q 025033 86 KVSIYDLVVGDIVHLSIGDQVPADGI 111 (259)
Q Consensus 86 ~i~~~~lv~GDii~v~~G~~iP~D~~ 111 (259)
.++.++|++||.|.=..|..-|+--+
T Consensus 15 ~~~Ve~L~~GD~V~T~dgg~~~V~wi 40 (147)
T PF13403_consen 15 PRPVEDLRPGDRVLTRDGGFQPVRWI 40 (147)
T ss_pred CeEeeccCCCCEEEecCCCEEEEEEE
Confidence 46789999999999998887776444
No 121
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=21.88 E-value=54 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=21.1
Q ss_pred eCCCccCCcEEEE-cCCCEEe-ccEEEEe
Q 025033 88 SIYDLVVGDIVHL-SIGDQVP-ADGIFIS 114 (259)
Q Consensus 88 ~~~~lv~GDii~v-~~G~~iP-~D~~vl~ 114 (259)
.-.+|.+||.|.| ++||.|| .++++.+
T Consensus 364 ~~~~i~iGD~V~V~raGdVIP~i~~vv~~ 392 (665)
T PRK07956 364 ERKDIRIGDTVVVRRAGDVIPEVVGVVLE 392 (665)
T ss_pred HHcCCCCCCEEEEEECCCccceeeeeecc
Confidence 4468999999999 5899999 5565544
No 122
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=21.68 E-value=55 Score=23.57 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=16.5
Q ss_pred CEEEEeeCCCccCCcEEEEcC
Q 025033 82 GQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 82 g~~~~i~~~~lv~GDii~v~~ 102 (259)
+....++.++++|||++..+.
T Consensus 42 ~~~~~~~~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 42 GFQKRVPISELQPGDLIFFKG 62 (105)
T ss_dssp SEEEHEEGGG-TTTEEEEEEG
T ss_pred ccccccchhcCCcccEEEEeC
Confidence 334468999999999999988
No 123
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=20.97 E-value=2.6e+02 Score=25.72 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=24.0
Q ss_pred eEEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEe
Q 025033 75 FIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS 114 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~ 114 (259)
.++++.+.+..++. +|-+.++.|+.+|+|.++..
T Consensus 242 gV~v~~~~~v~~v~------~~~v~~~~g~~i~~d~vi~~ 275 (424)
T PTZ00318 242 GVDIRTKTAVKEVL------DKEVVLKDGEVIPTGLVVWS 275 (424)
T ss_pred CCEEEeCCeEEEEe------CCEEEECCCCEEEccEEEEc
Confidence 45666565555554 34567888999999999876
No 124
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=20.66 E-value=58 Score=32.49 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=21.2
Q ss_pred eeCCCccCCcEEEE-cCCCEEe-ccEEEE
Q 025033 87 VSIYDLVVGDIVHL-SIGDQVP-ADGIFI 113 (259)
Q Consensus 87 i~~~~lv~GDii~v-~~G~~iP-~D~~vl 113 (259)
+...+|.+||.|.| ++||.|| .++++.
T Consensus 385 i~~~di~iGD~V~V~raGdVIPkI~~vv~ 413 (689)
T PRK14351 385 IEELGVNVGDRVRVKRAGDVIPYVEEVVE 413 (689)
T ss_pred HHHcCCCCCCEEEEEecCCccceeeeeec
Confidence 35578999999999 5899999 455554
No 125
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=20.62 E-value=2.7e+02 Score=27.84 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=21.1
Q ss_pred ECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecce
Q 025033 80 RDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS 117 (259)
Q Consensus 80 r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~ 117 (259)
+-|+...+.+-|.+|.|-.+++. +. -+|--.+.|++
T Consensus 124 v~GDiV~v~~Gd~IPaDG~vieG-~~-~VDESaLTGES 159 (673)
T PRK14010 124 KKGHIVRVATGEQIPNDGKVIKG-LA-TVDESAITGES 159 (673)
T ss_pred CCCCEEEECCCCcccCCeEEEEc-ce-EEecchhcCCC
Confidence 44666666666666666666653 22 45555555555
No 126
>PF14168 YjzC: YjzC-like protein
Probab=20.55 E-value=1.5e+02 Score=19.48 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=17.5
Q ss_pred CCEEEEeeC--CCccCCcEEEEcCCCEEec
Q 025033 81 DGQRQKVSI--YDLVVGDIVHLSIGDQVPA 108 (259)
Q Consensus 81 ~g~~~~i~~--~~lv~GDii~v~~G~~iP~ 108 (259)
+|..++|-. ..+.-+-.|.+++||++|-
T Consensus 16 ~G~Y~EvG~~G~~v~~p~~v~l~~Gd~fP~ 45 (57)
T PF14168_consen 16 NGTYVEVGERGGHVNNPKEVKLKKGDRFPP 45 (57)
T ss_pred CceEEEECCCCCccCCCcEEEecCCCcCcC
Confidence 344444432 3355556889999999883
No 127
>PRK06437 hypothetical protein; Provisional
Probab=20.48 E-value=1.3e+02 Score=20.00 Aligned_cols=26 Identities=15% Similarity=-0.052 Sum_probs=18.5
Q ss_pred ceEEEEECCEEEEeeCCCccCCcEEEE
Q 025033 74 IFIQVTRDGQRQKVSIYDLVVGDIVHL 100 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~lv~GDii~v 100 (259)
..+.+.+||+... +...|..||.|.+
T Consensus 35 ~~vaV~vNg~iv~-~~~~L~dgD~Vei 60 (67)
T PRK06437 35 EEYVVIVNGSPVL-EDHNVKKEDDVLI 60 (67)
T ss_pred ccEEEEECCEECC-CceEcCCCCEEEE
Confidence 3567778887765 5666778887766
No 128
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=20.40 E-value=36 Score=23.46 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=11.5
Q ss_pred eCCCccCCcEEEEcCCCEEecc
Q 025033 88 SIYDLVVGDIVHLSIGDQVPAD 109 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP~D 109 (259)
...++-.+|+..+++|+.+|.|
T Consensus 17 g~~~itl~ell~L~~Gdvi~L~ 38 (77)
T TIGR02480 17 GRTRITLGDLLKLGEGSVIELD 38 (77)
T ss_pred eceEeEHHHHhcCCCCCEEEcC
Confidence 3344455555555555555554
No 129
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=20.11 E-value=9.1e+02 Score=25.04 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=22.6
Q ss_pred CcEEEEcCCCEEeccEEEEe-cceeEEeccccCCCC
Q 025033 95 GDIVHLSIGDQVPADGIFIS-GYSLLIDESSLSGES 129 (259)
Q Consensus 95 GDii~v~~G~~iP~D~~vl~-g~~l~vdes~lTGEs 129 (259)
|....+...|.+|-|-++++ |+..-.|--.+.|++
T Consensus 162 g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~ 197 (903)
T PRK15122 162 PVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRD 197 (903)
T ss_pred CeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcCc
Confidence 46778888888888888886 444444444444444
No 130
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=20.04 E-value=96 Score=28.22 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=19.2
Q ss_pred eEEEEECCEEEEeeCCCccCCcEEEEcC
Q 025033 75 FIQVTRDGQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~~lv~GDii~v~~ 102 (259)
.+++.+++. ..++..+|+|||-+++.-
T Consensus 310 tIRlv~p~G-~~vsVt~Lk~GD~vL~~~ 336 (354)
T PF01959_consen 310 TIRLVGPDG-EPVSVTELKPGDEVLVYL 336 (354)
T ss_pred EEEEECCCC-CEeeeeecCCCCEEEEEe
Confidence 444444332 568899999999999854
Done!