Query 025033
Match_columns 259
No_of_seqs 203 out of 2048
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mhs_A Proton pump, plasma mem 100.0 2.8E-40 9.7E-45 326.7 14.9 242 2-254 115-363 (920)
2 2zxe_A Na, K-ATPase alpha subu 100.0 2E-39 6.7E-44 325.9 12.3 248 2-254 96-366 (1028)
3 3ar4_A Sarcoplasmic/endoplasmi 100.0 1.8E-38 6.1E-43 318.5 14.7 252 1-254 52-337 (995)
4 3ixz_A Potassium-transporting 100.0 5.8E-38 2E-42 315.5 16.9 248 1-253 100-370 (1034)
5 3rfu_A Copper efflux ATPase; a 100.0 2.6E-38 9E-43 307.1 11.6 216 33-253 184-409 (736)
6 3j09_A COPA, copper-exporting 100.0 3.2E-37 1.1E-41 300.1 12.8 215 36-254 173-395 (723)
7 3j08_A COPA, copper-exporting 100.0 1.2E-37 3.9E-42 299.7 8.4 215 36-254 95-317 (645)
8 3b8c_A ATPase 2, plasma membra 100.0 3.1E-40 1.1E-44 326.1 -11.9 245 2-253 60-313 (885)
9 2hc8_A PACS, cation-transporti 100.0 5.3E-33 1.8E-37 210.1 8.1 111 63-176 2-112 (113)
10 2kij_A Copper-transporting ATP 100.0 2.3E-32 7.8E-37 210.0 6.2 117 57-176 2-124 (124)
11 2jmz_A Hypothetical protein MJ 85.9 0.94 3.2E-05 35.9 4.8 35 75-109 104-138 (186)
12 2lcj_A PAB POLC intein; hydrol 80.1 1.9 6.5E-05 34.1 4.4 35 72-106 91-125 (185)
13 1at0_A 17-hedgehog; developmen 56.8 14 0.00048 27.7 4.5 32 72-103 70-103 (145)
14 2z1c_A Hydrogenase expression/ 50.6 32 0.0011 22.9 4.9 32 75-106 16-50 (75)
15 3ixz_A Potassium-transporting 48.4 1.2E+02 0.0043 30.2 11.1 74 43-117 150-232 (1034)
16 1uz5_A MOEA protein, 402AA lon 46.7 20 0.00069 31.9 4.5 34 88-122 89-124 (402)
17 1wu2_A MOEA protein, molybdopt 44.6 21 0.00072 31.6 4.3 30 88-117 91-122 (396)
18 2k1g_A Lipoprotein SPR; soluti 42.2 9.1 0.00031 28.6 1.3 20 85-104 61-80 (135)
19 4e2u_A PHO RADA intein; HINT-f 42.0 21 0.00071 27.4 3.4 27 76-103 99-125 (168)
20 2cw8_A Endonuclease PI-pkoii; 40.2 33 0.0011 31.6 5.1 29 74-102 96-124 (537)
21 1g8l_A Molybdopterin biosynthe 37.7 35 0.0012 30.4 4.6 29 88-116 86-116 (411)
22 2fts_A Gephyrin; gephyrin, neu 36.7 30 0.001 30.9 4.1 30 88-117 82-113 (419)
23 2jyx_A Lipoprotein SPR; soluti 34.2 21 0.0007 26.5 2.2 20 85-104 61-80 (136)
24 2ot2_A Hydrogenase isoenzymes 29.9 58 0.002 22.4 3.7 32 75-106 16-56 (90)
25 3jxo_A TRKA-N domain protein; 29.0 62 0.0021 21.2 3.8 25 76-101 44-70 (86)
26 3p42_A Predicted protein; beta 29.0 45 0.0015 27.3 3.6 31 74-104 166-204 (236)
27 2e6z_A Transcription elongatio 26.9 27 0.00093 21.9 1.5 26 89-114 5-30 (59)
28 3ij3_A Cytosol aminopeptidase; 25.9 28 0.00094 31.7 1.8 60 71-130 291-365 (482)
29 3sgi_A DNA ligase; HET: DNA AM 24.8 21 0.00073 33.6 1.0 27 87-113 374-402 (615)
30 2lkt_A Retinoic acid receptor 24.8 34 0.0012 24.7 1.9 27 88-114 4-35 (125)
31 1d1n_A Initiation factor 2; be 24.4 79 0.0027 22.2 3.7 15 88-102 78-92 (99)
32 3gt2_A Putative uncharacterize 24.2 31 0.0011 25.7 1.6 19 85-103 83-101 (142)
33 3pei_A Cytosol aminopeptidase; 23.1 30 0.001 31.6 1.5 60 70-129 291-365 (486)
34 2j58_A WZA, outer membrane lip 22.8 48 0.0016 28.9 2.8 30 74-103 191-232 (359)
35 2gpr_A Glucose-permease IIA co 22.8 79 0.0027 24.0 3.7 53 95-148 35-108 (154)
36 2crv_A IF-2MT, translation ini 22.5 1.1E+02 0.0038 22.2 4.3 10 74-83 44-53 (120)
37 2if6_A Hypothetical protein YI 22.4 43 0.0015 26.0 2.2 16 89-104 2-17 (186)
38 2in0_A Endonuclease PI-MTUI; h 22.3 45 0.0015 24.4 2.2 19 86-104 81-99 (139)
39 3ne0_A Resuscitation promoting 22.2 38 0.0013 27.3 1.9 19 85-103 152-170 (214)
40 3pbi_A Invasion protein; pepti 22.0 36 0.0012 27.5 1.6 19 85-103 152-170 (214)
41 4glx_A DNA ligase; inhibitor, 21.8 25 0.00084 33.0 0.7 25 89-113 366-392 (586)
42 1am2_A MXE GYRA intein; protei 21.6 1E+02 0.0035 24.1 4.4 20 84-103 90-109 (199)
43 3bbn_D Ribosomal protein S4; s 21.5 47 0.0016 26.5 2.3 26 78-103 116-141 (201)
44 2owo_A DNA ligase; protein-DNA 21.3 30 0.001 33.0 1.2 27 88-114 365-393 (671)
45 2hc9_A Leucine aminopeptidase 20.9 46 0.0016 30.4 2.3 61 70-130 292-368 (491)
No 1
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=100.00 E-value=2.8e-40 Score=326.67 Aligned_cols=242 Identities=19% Similarity=0.190 Sum_probs=191.3
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEEC
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD 81 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 81 (259)
.|++||++|++++++++++++++++ .|.++..++++++++.+++.++++++++.+++|.++.++ +++|+||
T Consensus 115 ~~l~~f~~~~~~ll~~aai~s~~~g--------~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~-~a~V~Rd 185 (920)
T 1mhs_A 115 KFLGFFVGPIQFVMEGAAVLAAGLE--------DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLAL-KAVVLRD 185 (920)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCTTCS--------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCS-SCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEEC
Confidence 5789999999999999999888765 567777777777788899999999999999999888764 8999999
Q ss_pred CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecce-eEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeC
Q 025033 82 GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS-LLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVG 160 (259)
Q Consensus 82 g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~-l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg 160 (259)
|++++|+++||+|||+|.+++||+|||||++++|++ +.||||+|||||.|+.|++++. +|+||.+.+|.++++|++||
T Consensus 186 G~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K~~gd~-v~sGT~v~~G~~~~~V~~tG 264 (920)
T 1mhs_A 186 GTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQ-VFASSAVKRGEAFVVITATG 264 (920)
T ss_dssp SSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEECCSSCE-ECSCBCCSCCCEEEEEEECS
T ss_pred CEEEEEEHHHcCCCCEEEeCCCCccccceEEEecCceeeeeccccCCCCcceEecCCCe-eecCceEecceEEEEEEEeC
Confidence 999999999999999999999999999999999985 7999999999999999999986 99999999999999999999
Q ss_pred ccccccchhhhccccccCchhHHHHHHHHHHHHHH---HHHHHhHhhcc-CCccHHHHHHHH-HHhhhhhhhhhhhcccc
Q 025033 161 MRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQII---IVEFLGALAST-VPLSWHLWLLCI-LIGAVSMPIAVVIKCIP 235 (259)
Q Consensus 161 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---iv~~~~~~~~~-~~~~~~~~~~~~-~il~ia~P~al~l~~~P 235 (259)
.+|.+||+.+++++++..++++...+..+...+.+ ++.++.++... ....|..++..+ .+++++|||+|.++ +|
T Consensus 265 ~~T~~g~I~~lv~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~i~~~~~~~~~~~~~~~l~~av~llV~aiP~aLp~~-vt 343 (920)
T 1mhs_A 265 DNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYRSNPIVQILEFTLAITIIGVPVGLPAV-VT 343 (920)
T ss_dssp TTCSTTTTTSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHSCCCHHHH-HH
T ss_pred CcCHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH-HH
Confidence 99999999999999888777665433322211111 11111111111 122455555544 57889999999999 88
Q ss_pred CCCCCCccc-cccceeecCC
Q 025033 236 VKKSEPKLQ-HHDGYEEIPS 254 (259)
Q Consensus 236 ~a~~~~~~~-~~~~~~~~~~ 254 (259)
++......+ +++|.+.+++
T Consensus 344 i~la~g~~~mak~~ilvk~~ 363 (920)
T 1mhs_A 344 TTMAVGAAYLAKKKAIVQKL 363 (920)
T ss_dssp HHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHHhCCeEEecC
Confidence 765443333 3444444443
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=100.00 E-value=2e-39 Score=325.90 Aligned_cols=248 Identities=20% Similarity=0.190 Sum_probs=194.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhcc---C--CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceE
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLAT---E--GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFI 76 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~---~--~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (259)
+|++||++|++++++++++++++++... . .+..+++++++++++++++.+++.++++++++.+++|.++.++ ++
T Consensus 96 ~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~-~a 174 (1028)
T 2zxe_A 96 KFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQ-QA 174 (1028)
T ss_dssp HHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCS-EE
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-ee
Confidence 6899999999999999999999876432 1 1223567788888888888899999999999999999888875 89
Q ss_pred EEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCC---------CEEEecceE
Q 025033 77 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN---------PFLLAGTKV 147 (259)
Q Consensus 77 ~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~---------~~v~~Gt~~ 147 (259)
+|+|||++++|+++||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|++++ |++|+||.+
T Consensus 175 ~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v~~GT~v 254 (1028)
T 2zxe_A 175 LVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNC 254 (1028)
T ss_dssp EEEETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEECTTCEE
T ss_pred EEEECCEEEEEEHHHCCcCCEEEECCCCEeeceEEEEeeCcEEEEcCccCCCCcceecccCCCCCCcccccceEEeCceE
Confidence 99999999999999999999999999999999999999987799999999999999999875 479999999
Q ss_pred ecceEEEEEEEeCccccccchhhhccccccCchhHHHHH-------HHHHHHHHHHHHHHhHhhccCCccHHHHHH-HHH
Q 025033 148 QDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGIL-------VLTVAFQIIIVEFLGALASTVPLSWHLWLL-CIL 219 (259)
Q Consensus 148 ~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~-~~~ 219 (259)
.+|.++++|++||.+|.+|||++++++++.+++++...+ ..++.+.++++++++.+ ....|...+. .+.
T Consensus 255 ~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~i~ 331 (1028)
T 2zxe_A 255 VEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLI---LGYSWLEAVIFLIG 331 (1028)
T ss_dssp EEEEEEEEEEECGGGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHH
T ss_pred EcceEEEEEEEeccccHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCcHHHHHHHHHH
Confidence 999999999999999999999999999888887654332 22222222222222221 1224444433 345
Q ss_pred HhhhhhhhhhhhccccCCCCCCccc-cccceeecCC
Q 025033 220 IGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIPS 254 (259)
Q Consensus 220 il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~~ 254 (259)
+++++|||+|.++ +|++......+ +++|.+.+++
T Consensus 332 llv~~iP~~Lp~~-vti~l~~~~~~mak~~ilvk~~ 366 (1028)
T 2zxe_A 332 IIVANVPEGLLAT-VTVCLTLTAKRMARKNCLVKNL 366 (1028)
T ss_dssp HHHHHSCTTHHHH-HHHHHHHHHHHHHTTTEEESST
T ss_pred HHHHHcCchHHHH-HHHHHHHHHHHHhhCCceeccc
Confidence 7888999999999 88764443333 4445444443
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=100.00 E-value=1.8e-38 Score=318.47 Aligned_cols=252 Identities=22% Similarity=0.280 Sum_probs=192.5
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhccCC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEE
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLATEG--WPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQV 78 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 78 (259)
++|++||++++++++++++++++++++...+ +...|+++.+++++++++..++.++|+++++.+++|.++.++ +++|
T Consensus 52 ~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~-~a~V 130 (995)
T 3ar4_A 52 ELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPE-MGKV 130 (995)
T ss_dssp HHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCS-EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-eEEE
Confidence 3689999999999999999999998876532 134688888888888888899999999999999999988775 8999
Q ss_pred EECCE--EEEeeCCCccCCcEEEEcCCCEEeccEEEEec--ceeEEeccccCCCCcceeecCCC------------CEEE
Q 025033 79 TRDGQ--RQKVSIYDLVVGDIVHLSIGDQVPADGIFISG--YSLLIDESSLSGESEPMYICDEN------------PFLL 142 (259)
Q Consensus 79 ~r~g~--~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g--~~l~vdes~lTGEs~pv~k~~~~------------~~v~ 142 (259)
+|||+ +++|+++||+|||+|.+++||+|||||+++++ ..|.||||+|||||.|+.|++++ +++|
T Consensus 131 ~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~ 210 (995)
T 3ar4_A 131 YRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLF 210 (995)
T ss_dssp EBTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEEC
T ss_pred EeCCCceEEEEEHHHCCCCCEEEECCCCcccccEEEEEEeeceEEEEcccccCCCcceeccccccCCcccCcccccceEe
Confidence 99987 69999999999999999999999999999653 44799999999999999999873 5799
Q ss_pred ecceEecceEEEEEEEeCccccccchhhhccccccCchhHHHHH-------HHHHHHHHHHHHHHhHhhccC---CccHH
Q 025033 143 AGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGIL-------VLTVAFQIIIVEFLGALASTV---PLSWH 212 (259)
Q Consensus 143 ~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~iv~~~~~~~~~~---~~~~~ 212 (259)
+||.+.+|.++++|++||.+|.+|||.+++++++.+++++...+ ..++.+.++++++++...... ...|.
T Consensus 211 ~GT~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (995)
T 3ar4_A 211 SGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWI 290 (995)
T ss_dssp TTCEEEECEEEEEEEECGGGSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSSSCHH
T ss_pred cCCEEEcceEEEEEEEcCcchHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence 99999999999999999999999999999999888877544332 222222222222222110100 11121
Q ss_pred H-----HHHHHHHhhhhhhhhhhhccccCCCCCCccc-cccceeecCC
Q 025033 213 L-----WLLCILIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIPS 254 (259)
Q Consensus 213 ~-----~~~~~~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~~ 254 (259)
. +...+.+++++|||+|.+. +|++......+ +++|.+.+++
T Consensus 291 ~~~~~~~~~ai~l~v~aiP~~Lp~~-vt~~la~~~~~ma~~~~lvr~~ 337 (995)
T 3ar4_A 291 RGAIYYFKIAVALAVAAIPEGLPAV-ITTCLALGTRRMAKKNAIVRSL 337 (995)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTHHHH-HHHHHHHHHHHHHHTTEEESCT
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHH-HHHHHHHHHHHhccCCcEeccc
Confidence 1 1123356889999999998 77654333333 3445544443
No 4
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=100.00 E-value=5.8e-38 Score=315.53 Aligned_cols=248 Identities=19% Similarity=0.192 Sum_probs=191.7
Q ss_pred ChHHHHhhHHHHHHHHHHHHHHHHHhhcc---CC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCce
Q 025033 1 MFVWEALQDLTLIILMVCAVLSIGVGLAT---EG--WPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIF 75 (259)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~a~~s~~~~~~~---~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (259)
+.|++||+++++++++++++++++.+... +. +...+++++.++++++++..+..++|+++++.++++.++.++ +
T Consensus 100 ~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~-~ 178 (1034)
T 3ixz_A 100 VKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ-Q 178 (1034)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCC-e
Confidence 36899999999999999999988765321 11 123467788888888888899999999999999999998875 8
Q ss_pred EEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCC---------CEEEecce
Q 025033 76 IQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN---------PFLLAGTK 146 (259)
Q Consensus 76 ~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~---------~~v~~Gt~ 146 (259)
++|+|||++++|+++||+|||+|.+++||+|||||++++++++.||||+|||||.|+.|++++ +++|+||.
T Consensus 179 a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~f~GT~ 258 (1034)
T 3ixz_A 179 ATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTM 258 (1034)
T ss_pred eEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCCceEEecccCCCCCCeeccCCCccccccccccceeccee
Confidence 999999999999999999999999999999999999999988899999999999999998752 46899999
Q ss_pred EecceEEEEEEEeCccccccchhhhccccccCchhHH-------HHHHHHHHHHHHHHHHHhHhhccCCccHHHHH-HHH
Q 025033 147 VQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFV-------GILVLTVAFQIIIVEFLGALASTVPLSWHLWL-LCI 218 (259)
Q Consensus 147 ~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~-~~~ 218 (259)
+.+|+++++|++||.+|.+|||.+++++.+..++++. ..+..++.+..+++++++.+ ....|...+ ..+
T Consensus 259 v~~G~~~~vVv~tG~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i 335 (1034)
T 3ixz_A 259 CLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMC---IGYTFLRAMVFFM 335 (1034)
T ss_pred EEeecceEEEEeehhhhHhhHHHHhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHH
Confidence 9999999999999999999999999998887776543 22222222222222222221 122343333 344
Q ss_pred HHhhhhhhhhhhhccccCCCCCCccc-cccceeecC
Q 025033 219 LIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIP 253 (259)
Q Consensus 219 ~il~ia~P~al~l~~~P~a~~~~~~~-~~~~~~~~~ 253 (259)
.+++++|||+|.+. +|++......+ +++|.+.++
T Consensus 336 ~l~v~~iPe~Lp~~-vti~la~~~~rmak~~~lvr~ 370 (1034)
T 3ixz_A 336 AIVVAYVPEGLLAT-VTVCLSLTAKRLASKNCVVKN 370 (1034)
T ss_pred HHHHheeccccHHH-HHHHHHHHHHHHhhCCeEecC
Confidence 67889999999888 77654444333 344444433
No 5
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.6e-38 Score=307.12 Aligned_cols=216 Identities=19% Similarity=0.243 Sum_probs=173.4
Q ss_pred CCcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEE-CCEEEEeeCCCccCCcEEEEcCCCEEeccE
Q 025033 33 PEGMYDGLGII-LSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR-DGQRQKVSIYDLVVGDIVHLSIGDQVPADG 110 (259)
Q Consensus 33 ~~~~~~~~~i~-~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r-~g~~~~i~~~~lv~GDii~v~~G~~iP~D~ 110 (259)
...||++..++ ++++++.+++..++.++++.+++|.++.|+ .++++| ||++++|++++|+|||+|+|++||+|||||
T Consensus 184 ~~~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~-~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg 262 (736)
T 3rfu_A 184 VAVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPE-SAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDG 262 (736)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCC-EEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccE
Confidence 35688877555 556677899999999999999999999886 788887 999999999999999999999999999999
Q ss_pred EEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchh-------HH
Q 025033 111 IFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWL-------FV 183 (259)
Q Consensus 111 ~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~-------~~ 183 (259)
++++|++ .||||+|||||.|+.|++||. +++||.|.+|.++++|+++|.+|.++||.+++++++.+|++ +.
T Consensus 263 ~vl~G~~-~VDES~LTGES~Pv~K~~gd~-v~~Gt~~~~G~~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a 340 (736)
T 3rfu_A 263 EVQEGRS-FVDESMVTGEPIPVAKEASAK-VIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVS 340 (736)
T ss_dssp EECSSCE-EEECSSSTTCSSCEEECTTCE-ECTTCEEESCCCCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHH
T ss_pred EEEECce-EeeecccCCccccEEeccCCc-CCCceEeccceEEEEEEEechhhHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 9999998 899999999999999999998 99999999999999999999999999999999988877763 34
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHH-HHhhhhhhhhhhhccccCCCCCCccccccceeecC
Q 025033 184 GILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSEPKLQHHDGYEEIP 253 (259)
Q Consensus 184 ~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~-~il~ia~P~al~l~~~P~a~~~~~~~~~~~~~~~~ 253 (259)
.++...+.+..++.++++.+. .....|..++..+ .+++++|||||.++ +|++......+.++.+.+.+
T Consensus 341 ~~~v~~vl~ia~~~~~~w~~~-~~~~~~~~~l~~ai~vlviacPcaL~la-~p~a~~~~~~~~a~~gilvk 409 (736)
T 3rfu_A 341 GWFVPAVILVAVLSFIVWALL-GPQPALSYGLIAAVSVLIIACPCALGLA-TPMSIMVGVGKGAQSGVLIK 409 (736)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CSSSSTTHHHHHHHHHHHHHCCSTHHHH-HHHHHHHHHHHHHHTTEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHhHHHhhhhHHHHH-HHHHHHHHHHHHhhcceeec
Confidence 444444444333333333332 2222355555554 68999999999999 99877666665444444443
No 6
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.2e-37 Score=300.11 Aligned_cols=215 Identities=22% Similarity=0.262 Sum_probs=169.8
Q ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEe
Q 025033 36 MYDGLGI-ILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS 114 (259)
Q Consensus 36 ~~~~~~i-~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~ 114 (259)
||++..+ +++++++.+++..++.++++.++++.++.++ .++|+|||++++|+++||+|||+|.+++||+|||||++++
T Consensus 173 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~-~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~ 251 (723)
T 3j09_A 173 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAK-TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE 251 (723)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCS-EEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eeEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEE
Confidence 6665544 4445566788888888888888888888875 8999999999999999999999999999999999999999
Q ss_pred cceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchhHHHHHHHHHHHHH
Q 025033 115 GYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQI 194 (259)
Q Consensus 115 g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (259)
|++ .||||+|||||.|+.|++|+. +|+||.|.+|.++++|+++|.+|.++|+.+++++++.++++.......+...++
T Consensus 252 G~~-~VdeS~LTGES~pv~K~~g~~-v~~Gt~~~~g~~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~ 329 (723)
T 3j09_A 252 GES-YVDESMISGEPVPVLKSKGDE-VFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFI 329 (723)
T ss_dssp CCE-EEECHHHHCCSSCEEECTTCE-ECTTCEECSSCEEEEEEECGGGSHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHH
T ss_pred CCe-EEecccccCCCcceeecCCCe-eccceEEecCcEEEEEEEecCccHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence 998 899999999999999999998 999999999999999999999999999999999999998876655544443333
Q ss_pred HHHHHHhHhhccCC-----ccHHHHHHH-HHHhhhhhhhhhhhccccCCCCCCcccc-ccceeecCC
Q 025033 195 IIVEFLGALASTVP-----LSWHLWLLC-ILIGAVSMPIAVVIKCIPVKKSEPKLQH-HDGYEEIPS 254 (259)
Q Consensus 195 ~iv~~~~~~~~~~~-----~~~~~~~~~-~~il~ia~P~al~l~~~P~a~~~~~~~~-~~~~~~~~~ 254 (259)
.++.+++.+....+ .+|..++.. +.+++++|||||.++ +|++......+. ++|++.+++
T Consensus 330 ~~vl~~a~~~~~~~~~~~~~~~~~~~~~~i~vlvia~P~aL~la-~p~a~~~~~~~~a~~gilvk~~ 395 (723)
T 3j09_A 330 PTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLA-TPTALTVGMGKGAELGILIKNA 395 (723)
T ss_dssp HHHHHHHHHHHTTSCSSTTCTTCCSHHHHHHHHHHHSCTTHHHH-HHHHHHHHHHHHHTTTCEESST
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHCCeEEeCh
Confidence 33322222221111 123334444 467999999999999 998876655554 445555444
No 7
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-37 Score=299.66 Aligned_cols=215 Identities=22% Similarity=0.270 Sum_probs=166.2
Q ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEe
Q 025033 36 MYDGLGI-ILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS 114 (259)
Q Consensus 36 ~~~~~~i-~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~ 114 (259)
||++..+ +++++++.+++..++.++++.++++.++.|+ +++|+|||++++++++||+|||+|.+++||+|||||++++
T Consensus 95 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~-~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~ 173 (645)
T 3j08_A 95 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAK-TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE 173 (645)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCS-EEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEE
Confidence 6665544 4445566688888888878888888888875 8999999999999999999999999999999999999999
Q ss_pred cceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhccccccCchhHHHHHHHHHHHHH
Q 025033 115 GYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQI 194 (259)
Q Consensus 115 g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (259)
|++ .||||+|||||.|+.|++|+. +|+||.+.+|.++++|+++|.+|.++|+.+++++++.+|+++......+...++
T Consensus 174 G~~-~VdeS~LTGES~Pv~K~~g~~-v~~Gt~~~~g~~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~ 251 (645)
T 3j08_A 174 GES-YVDESMISGEPVPVLKSKGDE-VFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFI 251 (645)
T ss_dssp CCE-EEECHHHHCCSSCEEECTTCE-ECTTCEECSSCEEEEEEECGGGSHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHH
T ss_pred CcE-EEEcccccCCCCceecCCCCE-eeccEEEecCcEEEEEEEcCCccHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence 998 899999999999999999998 999999999999999999999999999999999999888766544433333222
Q ss_pred HHHHHHhHhhccCC-----ccHHHHHHH-HHHhhhhhhhhhhhccccCCCCCCcccccc-ceeecCC
Q 025033 195 IIVEFLGALASTVP-----LSWHLWLLC-ILIGAVSMPIAVVIKCIPVKKSEPKLQHHD-GYEEIPS 254 (259)
Q Consensus 195 ~iv~~~~~~~~~~~-----~~~~~~~~~-~~il~ia~P~al~l~~~P~a~~~~~~~~~~-~~~~~~~ 254 (259)
.++..++.+....+ .++..++.. +.+++++|||||.++ +|++......+.++ |++.+++
T Consensus 252 ~~vl~~a~~~~~~~~~~~~~~~~~~~~~~i~vlvia~P~aL~la-~p~a~~~~~~~~a~~gilvk~~ 317 (645)
T 3j08_A 252 PTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLA-TPTALTVGMGKGAELGILIKNA 317 (645)
T ss_dssp HHHHHHHHHHHHCSSCCCSCSCCCTTTTTHHHHHHHSCTTHHHH-HHHHHHHHHHHHHTTCCCCSST
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHCCeEecCc
Confidence 22222221111111 122233333 467999999999999 99887665555444 4444443
No 8
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.1e-40 Score=326.06 Aligned_cols=245 Identities=20% Similarity=0.265 Sum_probs=188.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhCCceEEEEEC
Q 025033 2 FVWEALQDLTLIILMVCAVLSIGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD 81 (259)
Q Consensus 2 ~~~~~~~~~~~~l~l~~a~~s~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 81 (259)
.|++||++|++++++++++++++++... +.+..|+++..++++++++.+++.++++++++++++|.++.++ +++|+||
T Consensus 60 ~~l~~~~~p~~~il~~aaiis~~l~~~~-~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~-~a~V~Rd 137 (885)
T 3b8c_A 60 KFLGFMWNPLSWVMEMAAIMAIALANGD-GRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAP-KTKVLRD 137 (885)
T ss_dssp STTSCCCGGGSSHHHHHHHGGGGSSCCT-TSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSC-CCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-eEEEEEC
Confidence 5778999999999999999998876432 3345688888887777778889999999999999999888764 8899999
Q ss_pred CEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEEecceEecceEEEEEEEeCc
Q 025033 82 GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGM 161 (259)
Q Consensus 82 g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~ 161 (259)
|++++|+++||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|++++. +|+||.|.+|.++++|++||.
T Consensus 138 G~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K~~g~~-v~~GT~v~~G~~~~~V~~tG~ 216 (885)
T 3b8c_A 138 GKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQE-VFSGSTCKQGEIEAVVIATGV 216 (885)
T ss_dssp SCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCBSSCCC-CCSCCCCCSCCCCCBCCSCTT
T ss_pred CEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEcCcccccccccCCCCcceEecCCCc-cccCeEEeeeEEEEEEEEcCc
Confidence 9999999999999999999999999999999999987899999999999999999997 999999999999999999999
Q ss_pred cccccchhhhccccccCchhHHHHHHHHH-------HHHHHHHHHHhHhhccCCccHHHHHHH-HHHhhhhhhhhhhhcc
Q 025033 162 RTEWGKLMETLNEGMFDSWLFVGILVLTV-------AFQIIIVEFLGALASTVPLSWHLWLLC-ILIGAVSMPIAVVIKC 233 (259)
Q Consensus 162 ~t~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iv~~~~~~~~~~~~~~~~~~~~-~~il~ia~P~al~l~~ 233 (259)
+|.+||+.+++++ +.+++++...+..+. .+.+.+..++.+.. ...+|..++.. +.+++++|||||.+.
T Consensus 217 ~T~~g~i~~lv~~-~~~~~~lq~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~llv~aiP~aLp~~- 292 (885)
T 3b8c_A 217 HTFFGKAAHLVDS-TNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPI--QRRKYRDGIDNLLVLLIGGIPIAMPTV- 292 (885)
T ss_dssp TTTSTTCCCSCCS-CSCCSTTTTTTHHHHHHHHHHHHHHHHHHSTTTTTT--TCSCSTTHHHHHHHHTTTTCCSSTTTH-
T ss_pred ccHHHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 9999999998887 445554332221111 11011111111111 11234444444 467899999999887
Q ss_pred ccCCCCCCccc-cccceeecC
Q 025033 234 IPVKKSEPKLQ-HHDGYEEIP 253 (259)
Q Consensus 234 ~P~a~~~~~~~-~~~~~~~~~ 253 (259)
+|++......+ +++|.+.++
T Consensus 293 vti~la~g~~r~ak~~ilvk~ 313 (885)
T 3b8c_A 293 LSVTMAIGSHRLSQQGAITKR 313 (885)
T ss_dssp HHHTTTHHHHHHTTTSCCCSS
T ss_pred HHHHHHHHHHHHHhCCeEeCC
Confidence 66655444333 344444443
No 9
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.98 E-value=5.3e-33 Score=210.07 Aligned_cols=111 Identities=30% Similarity=0.501 Sum_probs=104.3
Q ss_pred HHHHhhchhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCcceeecCCCCEEE
Q 025033 63 QFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLL 142 (259)
Q Consensus 63 ~~~~l~~~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~pv~k~~~~~~v~ 142 (259)
++++|.++.++ .++|+|||+++++++++|+|||++.+++||+|||||++++|++ .+|||+|||||.|+.|++++. +|
T Consensus 2 al~~L~~l~p~-~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g~~-~vdeS~LTGEs~pv~k~~g~~-v~ 78 (113)
T 2hc8_A 2 AIKKLVGLQAK-TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKGDE-VF 78 (113)
T ss_dssp HHHHHHHHSCS-EEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTTCE-EC
T ss_pred HHHHHhcCCCC-EEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEceE-EEEccccCCCCccEEECCCCE-EE
Confidence 45667777775 8999999999999999999999999999999999999999996 899999999999999999997 99
Q ss_pred ecceEecceEEEEEEEeCccccccchhhhccccc
Q 025033 143 AGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176 (259)
Q Consensus 143 ~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~ 176 (259)
+||.|.+|.+.++|+++|.+|.++||++++++++
T Consensus 79 aGt~~~~G~~~~~V~~~g~~T~~~~i~~lv~~a~ 112 (113)
T 2hc8_A 79 GATINNTGVLKIRATRVGGETLLAQIVKLVEDAM 112 (113)
T ss_dssp TTCEECSSCEEEEEEECGGGSHHHHHHHHHHHHH
T ss_pred eCCEEeeceEEEEEEEecCcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988764
No 10
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.97 E-value=2.3e-32 Score=210.00 Aligned_cols=117 Identities=25% Similarity=0.382 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhhchhCCceEEEEECCE------EEEeeCCCccCCcEEEEcCCCEEeccEEEEecceeEEeccccCCCCc
Q 025033 57 DYKQSLQFRDLDREKKKIFIQVTRDGQ------RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESE 130 (259)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~v~r~g~------~~~i~~~~lv~GDii~v~~G~~iP~D~~vl~g~~l~vdes~lTGEs~ 130 (259)
++++++.+++|.++.|. .++|+|+|+ ++++++++|+|||+|.+++||+|||||++++|++ .+|||+|||||.
T Consensus 2 ~~ka~~~l~~L~~l~p~-~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g~~-~vdeS~LTGEs~ 79 (124)
T 2kij_A 2 SFTMSEALAKLISLQAT-EATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAM 79 (124)
T ss_dssp ----CCHHHHHHHTCCS-EEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSCCC-EEECTTTTCCSS
T ss_pred hHHHHHHHHHHhccCCC-EEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEccE-EEEeccccCCCc
Confidence 45677788888888875 899999764 7889999999999999999999999999999998 899999999999
Q ss_pred ceeecCCCCEEEecceEecceEEEEEEEeCccccccchhhhccccc
Q 025033 131 PMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 176 (259)
Q Consensus 131 pv~k~~~~~~v~~Gt~~~~g~~~~~V~~tg~~t~~~~i~~~~~~~~ 176 (259)
|+.|.+++. +|+||.|.+|.+.++|+++|.+|.+++|++++++++
T Consensus 80 pv~k~~g~~-v~aGt~~~~G~~~~~v~~~g~~T~~~~I~~lv~~a~ 124 (124)
T 2kij_A 80 PVAKKPGST-VIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124 (124)
T ss_dssp CEECCTTEE-ECTTCEEESSCCEEEECSCTTTCHHHHHHHHTTTTC
T ss_pred cEEeCCCCE-EEcCCEEeeeEEEEEEEEecccCHHHHHHHHHHhhC
Confidence 999999997 999999999999999999999999999999998764
No 11
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=85.93 E-value=0.94 Score=35.93 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=28.8
Q ss_pred eEEEEECCEEEEeeCCCccCCcEEEEcCCCEEecc
Q 025033 75 FIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPAD 109 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D 109 (259)
...+.++|+.+.+++++|++||.|.+..|..++.|
T Consensus 104 p~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~~~ 138 (186)
T 2jmz_A 104 PVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLD 138 (186)
T ss_dssp EEEEEETTEEEEEEGGGCCTTSEEEEECSSSEEEE
T ss_pred EEEEeCCCeEEEEEhhcCCCCCEEEecccCCccce
Confidence 46666778888999999999999999887666554
No 12
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=80.07 E-value=1.9 Score=34.07 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEE
Q 025033 72 KKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQV 106 (259)
Q Consensus 72 ~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~i 106 (259)
++....+.++|+.+.+.+++|++||.|.+..++.-
T Consensus 91 ~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~ 125 (185)
T 2lcj_A 91 VDHPVLVYENGRFIEKRAFEVKEGDKVLVSELELV 125 (185)
T ss_dssp SSSEEEEEETTEEEEEEGGGCCTTCEEEECCCCCS
T ss_pred CCCEEEEecCCeEEEEEHHHCCCCCEEEEcccccc
Confidence 34456777888889999999999999999876643
No 13
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=56.84 E-value=14 Score=27.74 Aligned_cols=32 Identities=9% Similarity=-0.115 Sum_probs=24.7
Q ss_pred CCceEEEEEC--CEEEEeeCCCccCCcEEEEcCC
Q 025033 72 KKIFIQVTRD--GQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 72 ~~~~~~v~r~--g~~~~i~~~~lv~GDii~v~~G 103 (259)
++....+... ++...+.+++|++||.+.+..|
T Consensus 70 p~H~i~v~~~~~~~~~~v~A~~l~~GD~v~~~~~ 103 (145)
T 1at0_A 70 PAHLVSVWQPESQKLTFVFADRIEEKNQVLVRDV 103 (145)
T ss_dssp TTCEEEEEETTTTEEEEEEGGGCCTTCEEEEECT
T ss_pred CCCEEEEecCCCCcEEEEEHHHCcCCCEEEEecC
Confidence 3345566555 4578899999999999999877
No 14
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=50.57 E-value=32 Score=22.91 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.1
Q ss_pred eEEEEECCEEEEee---CCCccCCcEEEEcCCCEE
Q 025033 75 FIQVTRDGQRQKVS---IYDLVVGDIVHLSIGDQV 106 (259)
Q Consensus 75 ~~~v~r~g~~~~i~---~~~lv~GDii~v~~G~~i 106 (259)
.++|-.+|..++++ ..+..+||-+++..|--+
T Consensus 16 ~A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~GfAi 50 (75)
T 2z1c_A 16 VAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFAI 50 (75)
T ss_dssp EEEEEETTEEEEEECTTSTTCCTTCEEEEETTEEE
T ss_pred EEEEEcCCEEEEEEEEEeCCCCCCCEEEEecchhh
Confidence 57777788888887 456789999999999543
No 15
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=48.44 E-value=1.2e+02 Score=30.17 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchh-----CCceEEE----EECCEEEEeeCCCccCCcEEEEcCCCEEeccEEEE
Q 025033 43 ILSILLVVMVTAISDYKQSLQFRDLDREK-----KKIFIQV----TRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFI 113 (259)
Q Consensus 43 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~v----~r~g~~~~i~~~~lv~GDii~v~~G~~iP~D~~vl 113 (259)
+++-....+....+..++-++++++.... +.....+ +.-|+...+..-|.+|-|..+++.++. -+|=-.+
T Consensus 150 v~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~l-~VdES~L 228 (1034)
T 3ixz_A 150 VVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGR-KVDNSSL 228 (1034)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCCc-eEEeccc
Confidence 33333445555566666666666654321 1111122 245777777778888888777765432 1455555
Q ss_pred ecce
Q 025033 114 SGYS 117 (259)
Q Consensus 114 ~g~~ 117 (259)
.|++
T Consensus 229 TGES 232 (1034)
T 3ixz_A 229 TGES 232 (1034)
T ss_pred CCCC
Confidence 5554
No 16
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=46.67 E-value=20 Score=31.85 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=26.4
Q ss_pred eCCCccCCcEEEEcCCCEEe--ccEEEEecceeEEec
Q 025033 88 SIYDLVVGDIVHLSIGDQVP--ADGIFISGYSLLIDE 122 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP--~D~~vl~g~~l~vde 122 (259)
+..++.+|+.+.+..|..+| ||.++..-.. ..++
T Consensus 89 ~~~~l~~g~a~~i~TGa~~P~GadaVV~~E~~-~~~~ 124 (402)
T 1uz5_A 89 PKFKLGKGEAAYISTGAMLPGNADAVIQFEDV-ERVN 124 (402)
T ss_dssp CCCBCCTTEEEEECTTCBCCBTCCEEEEGGGE-EEET
T ss_pred CCCccCCCcEEEEccCCCCCCCCCEEEEEEEE-EecC
Confidence 35678999999999999998 8988876544 3443
No 17
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=44.64 E-value=21 Score=31.65 Aligned_cols=30 Identities=13% Similarity=0.430 Sum_probs=24.8
Q ss_pred eCCCccCCcEEEEcCCCEEe--ccEEEEecce
Q 025033 88 SIYDLVVGDIVHLSIGDQVP--ADGIFISGYS 117 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP--~D~~vl~g~~ 117 (259)
+..++.+|+.+.+..|..+| +|.++..-..
T Consensus 91 ~~~~l~~g~a~~I~TGa~~P~GadaVV~~E~~ 122 (396)
T 1wu2_A 91 AKEEVTTGKAIKVLTGTRIPKGANAVIMQEMV 122 (396)
T ss_dssp CSSCCCTTEEEEECTTCBCCTTCCEEEEGGGS
T ss_pred CCCccCCCcEEEEccCCCCCCCCCEEEEEEEE
Confidence 35678999999999999998 8998876544
No 18
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=42.17 E-value=9.1 Score=28.62 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.5
Q ss_pred EEeeCCCccCCcEEEEcCCC
Q 025033 85 QKVSIYDLVVGDIVHLSIGD 104 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G~ 104 (259)
+.|+.++++|||+|..+.|.
T Consensus 61 ~~V~~~~l~pGDLvFf~~~~ 80 (135)
T 2k1g_A 61 KSVSRSNLRTGDLVLFRAGS 80 (135)
T ss_dssp EEECGGGCCTTEEEEEEETT
T ss_pred cEecHHHccCCcEEEECCCC
Confidence 45788999999999997654
No 19
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=41.97 E-value=21 Score=27.44 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCEEEEeeCCCccCCcEEEEcCC
Q 025033 76 IQVTRDGQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 76 ~~v~r~g~~~~i~~~~lv~GDii~v~~G 103 (259)
..+.++++ ..+++.+|++||.+.+..|
T Consensus 99 ~~~~~~~~-~w~~a~~L~~Gd~l~~~~g 125 (168)
T 4e2u_A 99 VLLFRDGL-QWVPAAEVKPGDVVVGVRN 125 (168)
T ss_dssp EEEESSSE-EEEEGGGCCTTCEEEEEET
T ss_pred EEEEcCCC-EEEEHHHCCCCCEEEeccC
Confidence 33434443 6778999999999999887
No 20
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=40.17 E-value=33 Score=31.62 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.1
Q ss_pred ceEEEEECCEEEEeeCCCccCCcEEEEcC
Q 025033 74 IFIQVTRDGQRQKVSIYDLVVGDIVHLSI 102 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~~~lv~GDii~v~~ 102 (259)
.+.-+.+||+...++.++|.+||.|.+..
T Consensus 96 H~~l~~~~g~~~~~~a~elk~GD~v~~~~ 124 (537)
T 2cw8_A 96 HSLFSVRNGELVEVTGDELKPGDLVAVPR 124 (537)
T ss_dssp CEEEEEETTEEEEEETTTCCTTCEEEEES
T ss_pred ceEEEEECCEEEEEEhhcCCCCCEEEEee
Confidence 34556678999999999999999999854
No 21
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=37.69 E-value=35 Score=30.42 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=24.1
Q ss_pred eCCCccCCcEEEEcCCCEEe--ccEEEEecc
Q 025033 88 SIYDLVVGDIVHLSIGDQVP--ADGIFISGY 116 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP--~D~~vl~g~ 116 (259)
+..++.+|+.+.+..|..+| ||.++..-+
T Consensus 86 ~~~~l~~g~a~rI~TGa~~P~gadaVV~~E~ 116 (411)
T 1g8l_A 86 YHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQ 116 (411)
T ss_dssp CCSCCCTTCEEEECTTCBCCTTCCEEEEGGG
T ss_pred CCcccCCCcEEEEccCCCCCCCccEEEEEee
Confidence 35678999999999999999 788876544
No 22
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=36.73 E-value=30 Score=30.86 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=25.3
Q ss_pred eCCCccCCcEEEEcCCCEEe--ccEEEEecce
Q 025033 88 SIYDLVVGDIVHLSIGDQVP--ADGIFISGYS 117 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~~iP--~D~~vl~g~~ 117 (259)
+...+.+|+.+++..|..+| ||+++..-..
T Consensus 82 ~~~~l~~g~avrI~TGa~~P~gaDaVv~~E~~ 113 (419)
T 2fts_A 82 PTQTVMPGQVMRVTTGAPIPCGADAVVQVEDT 113 (419)
T ss_dssp CCCCCCTTEEEEECTTCBCCTTCCEEEEGGGE
T ss_pred CCCccCCCeEEEEeCCCCCCCCCcEEEEEEeE
Confidence 35679999999999999999 8999876543
No 23
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=34.18 E-value=21 Score=26.48 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.6
Q ss_pred EEeeCCCccCCcEEEEcCCC
Q 025033 85 QKVSIYDLVVGDIVHLSIGD 104 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G~ 104 (259)
+.++.++++|||++..+.+.
T Consensus 61 ~~v~~~~l~pGDLvff~~~~ 80 (136)
T 2jyx_A 61 KSVSRSNLRTGDLVLFRAGS 80 (136)
T ss_dssp EECCTTTCCTTEEEEEECSS
T ss_pred eEcchHhCCCCCEEEECCCC
Confidence 45678899999999998764
No 24
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=29.89 E-value=58 Score=22.42 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.6
Q ss_pred eEEEEECCEEEEeeCC---------CccCCcEEEEcCCCEE
Q 025033 75 FIQVTRDGQRQKVSIY---------DLVVGDIVHLSIGDQV 106 (259)
Q Consensus 75 ~~~v~r~g~~~~i~~~---------~lv~GDii~v~~G~~i 106 (259)
.++|-..|..++++.. +..+||-++|..|--+
T Consensus 16 ~A~Vd~~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH~GfAi 56 (90)
T 2ot2_A 16 QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAM 56 (90)
T ss_dssp EEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEETTEEE
T ss_pred cEEEEcCCeEEEEEEeeeeccCCCCCCCCCCEEEEecChhh
Confidence 3667677877777754 4579999999999543
No 25
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=29.02 E-value=62 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=16.8
Q ss_pred EEEEECCEEEEee--CCCccCCcEEEEc
Q 025033 76 IQVTRDGQRQKVS--IYDLVVGDIVHLS 101 (259)
Q Consensus 76 ~~v~r~g~~~~i~--~~~lv~GDii~v~ 101 (259)
+.+.|+|+.. +| ...|.+||++.+.
T Consensus 44 ~~I~R~~~~~-~p~~~~~l~~GD~l~v~ 70 (86)
T 3jxo_A 44 AAIVRGGVLV-VPRGDTEILSGDKLYVI 70 (86)
T ss_dssp EEEEETTEEE-CCCTTCBCCTTCEEEEE
T ss_pred EEEEECCEEE-CCCCCCEECCCCEEEEE
Confidence 4466888765 34 4458888888764
No 26
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=29.00 E-value=45 Score=27.26 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=22.4
Q ss_pred ceEEEEE-CCEEEEeeC-------CCccCCcEEEEcCCC
Q 025033 74 IFIQVTR-DGQRQKVSI-------YDLVVGDIVHLSIGD 104 (259)
Q Consensus 74 ~~~~v~r-~g~~~~i~~-------~~lv~GDii~v~~G~ 104 (259)
..+.|++ ||+....+. .++.|||.|.|....
T Consensus 166 ~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~ 204 (236)
T 3p42_A 166 NNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSA 204 (236)
T ss_dssp SEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBCT
T ss_pred ccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCCc
Confidence 3677665 788777663 379999999987543
No 27
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.89 E-value=27 Score=21.88 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.8
Q ss_pred CCCccCCcEEEEcCCCEEeccEEEEe
Q 025033 89 IYDLVVGDIVHLSIGDQVPADGIFIS 114 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~~iP~D~~vl~ 114 (259)
..++.+||.|.+..|..-=..|.+.+
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~e 30 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILS 30 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECC
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEE
Confidence 45689999999999987767777754
No 28
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=25.86 E-value=28 Score=31.74 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=41.8
Q ss_pred hCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEe-----ccEEEEec----------ceeEEeccccCCCCc
Q 025033 71 KKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISG----------YSLLIDESSLSGESE 130 (259)
Q Consensus 71 ~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP-----~D~~vl~g----------~~l~vdes~lTGEs~ 130 (259)
..+..+..+-.--+-.++..-.+|||+|.-..|..|= |.|+++=. ..+.||-+.|||--.
T Consensus 291 ~lpvnv~~ii~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAEGRLVLADaL~yA~~~~P~~iID~ATLTGA~~ 365 (482)
T 3ij3_A 291 QLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLIIDFSTLTGAAR 365 (482)
T ss_dssp TCSSEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHTTCCSEEEEEEECCSGGG
T ss_pred CCCceEEEEEEeeccCCCCCCCCCCCEEEeCCCCEEEEecCCcchhhhhHHHHHHHHhcCCCEEEEecchhhhHH
Confidence 3334566665555667889999999999999999886 33444321 125799999998744
No 29
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=24.85 E-value=21 Score=33.59 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=21.1
Q ss_pred eeCCCccCCcEEEEc-CCCEEec-cEEEE
Q 025033 87 VSIYDLVVGDIVHLS-IGDQVPA-DGIFI 113 (259)
Q Consensus 87 i~~~~lv~GDii~v~-~G~~iP~-D~~vl 113 (259)
|.-.++.+||.|.|. +||.||- ++++.
T Consensus 374 i~~~di~iGD~V~V~rAGdVIP~V~~vv~ 402 (615)
T 3sgi_A 374 IKRKGVLIGDTVVIRKAGDVIPEVLGPVV 402 (615)
T ss_dssp TTTTCCCBTCEEEEECCSSSSCCCCEECT
T ss_pred HHHcCCCCCCEEEEEEcCCCccceeeecc
Confidence 456689999999995 7999994 66554
No 30
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=24.83 E-value=34 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=18.6
Q ss_pred eCCCccCCcEEEEcCCC-----EEeccEEEEe
Q 025033 88 SIYDLVVGDIVHLSIGD-----QVPADGIFIS 114 (259)
Q Consensus 88 ~~~~lv~GDii~v~~G~-----~iP~D~~vl~ 114 (259)
+.++.+|||+|.+..+. ..--||.|+.
T Consensus 4 ~~~ep~pGDlI~~~r~~Y~H~gIYvGdg~ViH 35 (125)
T 2lkt_A 4 PHQEPKPGDLIEIFRLGYEHWALYIGDGYVIH 35 (125)
T ss_dssp SSCCCCTTCEEEEECSSSCEEEEEEETTEEEE
T ss_pred CCCCCCCCCEEEEeCCCccEEEEEeCCCeEEE
Confidence 56789999999997653 2223555555
No 31
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=24.43 E-value=79 Score=22.16 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=10.0
Q ss_pred eCCCccCCcEEEEcC
Q 025033 88 SIYDLVVGDIVHLSI 102 (259)
Q Consensus 88 ~~~~lv~GDii~v~~ 102 (259)
...|+++||+|..-.
T Consensus 78 ~~~dik~GD~Ie~ye 92 (99)
T 1d1n_A 78 NFNDIKEGDVIEAYV 92 (99)
T ss_dssp TCSSCSSCSEEEEEC
T ss_pred CcCCCCCCCEEEEEE
Confidence 356778888776543
No 32
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=24.23 E-value=31 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.2
Q ss_pred EEeeCCCccCCcEEEEcCC
Q 025033 85 QKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G 103 (259)
+.|+.++++|||++..+.+
T Consensus 83 ~~v~~~~~~pGDlvff~~~ 101 (142)
T 3gt2_A 83 QKILPQQARKGDLIFYGPE 101 (142)
T ss_dssp EEECGGGCCTTCEEEESGG
T ss_pred ceechhhCCCCCEEEeCCC
Confidence 3567789999999998653
No 33
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}
Probab=23.08 E-value=30 Score=31.63 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=35.8
Q ss_pred hhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEe-----ccEEEEecc----------eeEEeccccCCCC
Q 025033 70 EKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISGY----------SLLIDESSLSGES 129 (259)
Q Consensus 70 ~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP-----~D~~vl~g~----------~l~vdes~lTGEs 129 (259)
+..+.++..+-.--+-.++..-.+|||+|.-..|.+|= |.|+++=.+ .+.||-+.|||--
T Consensus 291 l~l~vnv~~~i~~~ENm~sg~A~rPgDVits~~G~TVEV~NTDAEGRLvLADaL~ya~~~~p~~iiD~ATLTGA~ 365 (486)
T 3pei_A 291 LNLPVNVVGVMGLAENAVDARSYRPGDVLKSMKGITVEVSNTDAEGRLVLCDTLTYIGKYKPKAVIDLATLTGAM 365 (486)
T ss_dssp HTCSSEEEEEEEEEEC------CCTTEEEECTTCCEEEECCGGGHHHHHHHHHHHHGGGGCCSEEEEEECCCTHH
T ss_pred cCCCcEEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEEeccCcccceeehhHHHHHHhhCCCEEEEehhhHHHH
Confidence 33334555555555567888999999999999999886 344443211 2578999999863
No 34
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=22.83 E-value=48 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred ceEEEEECCEEEEeeC------------CCccCCcEEEEcCC
Q 025033 74 IFIQVTRDGQRQKVSI------------YDLVVGDIVHLSIG 103 (259)
Q Consensus 74 ~~~~v~r~g~~~~i~~------------~~lv~GDii~v~~G 103 (259)
..+.+.|+|+...++. ..|++||+|.|.+-
T Consensus 191 ~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~ 232 (359)
T 2j58_A 191 RNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSN 232 (359)
T ss_dssp TCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBG
T ss_pred ceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeec
Confidence 4688999999877753 34788999988754
No 35
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=22.77 E-value=79 Score=23.97 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=38.5
Q ss_pred CcEEEEcCCC---EEeccEEEEec------------ceeE------EeccccCCCCcceeecCCCCEEEecceEe
Q 025033 95 GDIVHLSIGD---QVPADGIFISG------------YSLL------IDESSLSGESEPMYICDENPFLLAGTKVQ 148 (259)
Q Consensus 95 GDii~v~~G~---~iP~D~~vl~g------------~~l~------vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 148 (259)
||-+-+.+-+ +-|+||.+..- +... +|+..+.||-.-...+.||+ |-+|..+.
T Consensus 35 G~Giai~p~~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~-V~~G~~L~ 108 (154)
T 2gpr_A 35 GDGFAINPKSNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQE-VNAGDKLV 108 (154)
T ss_dssp CEEEEEEESSSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCE-ECTTCEEE
T ss_pred eCeEEEEeCCCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCE-EcCCCEEE
Confidence 6666665433 57999999751 1112 38999999988888889998 88998665
No 36
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.50 E-value=1.1e+02 Score=22.18 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.4
Q ss_pred ceEEEEECCE
Q 025033 74 IFIQVTRDGQ 83 (259)
Q Consensus 74 ~~~~v~r~g~ 83 (259)
.+++++|||.
T Consensus 44 ~~vRviRdg~ 53 (120)
T 2crv_A 44 KKFKLIRNGQ 53 (120)
T ss_dssp SCEEEEETTE
T ss_pred CeEEEEECCE
Confidence 4688888875
No 37
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=22.42 E-value=43 Score=25.96 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.7
Q ss_pred CCCccCCcEEEEcCCC
Q 025033 89 IYDLVVGDIVHLSIGD 104 (259)
Q Consensus 89 ~~~lv~GDii~v~~G~ 104 (259)
.++|++||+|..+.+.
T Consensus 2 ~~~l~~GDlvf~~~~~ 17 (186)
T 2if6_A 2 LWQPQTGDIIFQISRS 17 (186)
T ss_dssp -CCCCTTCEEEECCCS
T ss_pred cccCCCCCEEEEEcCC
Confidence 4689999999998753
No 38
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=22.28 E-value=45 Score=24.37 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=16.0
Q ss_pred EeeCCCccCCcEEEEcCCC
Q 025033 86 KVSIYDLVVGDIVHLSIGD 104 (259)
Q Consensus 86 ~i~~~~lv~GDii~v~~G~ 104 (259)
.+++.+|++||.+.+..|.
T Consensus 81 w~~a~~L~~Gd~v~~~~~~ 99 (139)
T 2in0_A 81 WRAAGELRKGDRVAVRDVE 99 (139)
T ss_dssp EEEGGGCCTTCEEEEECTT
T ss_pred cEEHHHCCCCCEEEeCCCc
Confidence 3578899999999998775
No 39
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=22.15 E-value=38 Score=27.33 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.6
Q ss_pred EEeeCCCccCCcEEEEcCC
Q 025033 85 QKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G 103 (259)
+.|+.++++|||+|..+.|
T Consensus 152 ~~V~~~~lqpGDLvFf~~g 170 (214)
T 3ne0_A 152 RKIPSSQMRRGDVIFYGPN 170 (214)
T ss_dssp EEEEGGGCCTTCEEEESGG
T ss_pred ceechhhCCCCCEEEecCC
Confidence 4567889999999998754
No 40
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=21.96 E-value=36 Score=27.48 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.7
Q ss_pred EEeeCCCccCCcEEEEcCC
Q 025033 85 QKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 85 ~~i~~~~lv~GDii~v~~G 103 (259)
+.|+.++++|||+|....|
T Consensus 152 ~~V~~~~lqpGDLVff~~g 170 (214)
T 3pbi_A 152 RHVPPAEAKRGDLIFYGPG 170 (214)
T ss_dssp EEECGGGCCTTCEEEESGG
T ss_pred eeechhhCCCCCEEEecCC
Confidence 4567889999999998654
No 41
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=21.77 E-value=25 Score=33.01 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.0
Q ss_pred CCCccCCcEEEE-cCCCEEe-ccEEEE
Q 025033 89 IYDLVVGDIVHL-SIGDQVP-ADGIFI 113 (259)
Q Consensus 89 ~~~lv~GDii~v-~~G~~iP-~D~~vl 113 (259)
-.++.+||.|.| ++||.|| .+.++.
T Consensus 366 ~~di~iGD~V~V~rAGdVIP~I~~Vv~ 392 (586)
T 4glx_A 366 RLGLRIGDKVVIRRAGDVIPQVVNVVL 392 (586)
T ss_dssp HHTCEETCEEEEEEETTTEEEEEEECG
T ss_pred hcCCCcCCEEEEEECCCcCccceeeec
Confidence 368999999999 5899999 555554
No 42
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=21.64 E-value=1e+02 Score=24.12 Aligned_cols=20 Identities=15% Similarity=0.033 Sum_probs=16.4
Q ss_pred EEEeeCCCccCCcEEEEcCC
Q 025033 84 RQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 84 ~~~i~~~~lv~GDii~v~~G 103 (259)
...++..+|+|||.|.+..+
T Consensus 90 ~~w~~a~eLk~GD~v~~~~~ 109 (199)
T 1am2_A 90 LLWKLIDEIKPGDYAVIQRS 109 (199)
T ss_dssp EEEEEGGGCCTTCEEEEEGG
T ss_pred eeEEEhhHCCCCCEEEECCc
Confidence 35679999999999998654
No 43
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.55 E-value=47 Score=26.51 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=21.7
Q ss_pred EEECCEEEEeeCCCccCCcEEEEcCC
Q 025033 78 VTRDGQRQKVSIYDLVVGDIVHLSIG 103 (259)
Q Consensus 78 v~r~g~~~~i~~~~lv~GDii~v~~G 103 (259)
|.-||+....++..+.+||.|.+...
T Consensus 116 V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 116 ILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp EEETTEECCCTTCBCCTTEEEEECSS
T ss_pred EEeCCEEEeecceecCCCCEEEEccc
Confidence 44588888889999999999999754
No 44
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.28 E-value=30 Score=33.01 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=20.6
Q ss_pred eCCCccCCcEEEE-cCCCEEe-ccEEEEe
Q 025033 88 SIYDLVVGDIVHL-SIGDQVP-ADGIFIS 114 (259)
Q Consensus 88 ~~~~lv~GDii~v-~~G~~iP-~D~~vl~ 114 (259)
.-.++.+||.|.| ++||.|| .++++.+
T Consensus 365 ~~~di~iGD~V~V~rAGdvIP~i~~vv~~ 393 (671)
T 2owo_A 365 ERLGLRIGDKVVIRRAGDVIPQVVNVVLS 393 (671)
T ss_dssp HHHTCCBTCEEEEEEETTTEEEEEEECGG
T ss_pred HHcCCCCCCEEEEEECCCcccceeccccc
Confidence 4567999999988 5899999 4555543
No 45
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=20.92 E-value=46 Score=30.43 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=42.0
Q ss_pred hhCCceEEEEECCEEEEeeCCCccCCcEEEEcCCCEEec-----cEEEEe-----------cceeEEeccccCCCCc
Q 025033 70 EKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPA-----DGIFIS-----------GYSLLIDESSLSGESE 130 (259)
Q Consensus 70 ~~~~~~~~v~r~g~~~~i~~~~lv~GDii~v~~G~~iP~-----D~~vl~-----------g~~l~vdes~lTGEs~ 130 (259)
+..+.++..+-.--+-.++..-.+|||+|.-..|.+|=. .|+++= .....+|-+.|||--.
T Consensus 292 l~l~vnv~~~l~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAEGRLvLADaL~yA~~~~~p~~iiD~ATLTGA~~ 368 (491)
T 2hc9_A 292 HGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATLTGAQA 368 (491)
T ss_dssp TTCCSEEEEEEEEEEECCSTTSCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHHTTCCSEEEEEECCCTTHH
T ss_pred cCCCceEEEEEEeeecCCCCCCCCCCCEEEeCCCcEEEEecCCccceeeehhHHHHHhhhcCCCEEEEecchHHHHH
Confidence 333345665555556678899999999999999998853 344331 1225799999998743
Done!