Your job contains 1 sequence.
>025034
MEGIEGESSGAGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI
LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL
FKLASHEAKKSRAQNRILRVILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ
KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK
SPAADTTNGEDTVPVTSSQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025034
(259 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2123802 - symbol:AT4G32960 "AT4G32960" species... 887 7.5e-89 1
UNIPROTKB|Q5M8J0 - symbol:babam1 "BRISC and BRCA1-A compl... 185 3.0e-13 1
UNIPROTKB|Q6DJG6 - symbol:babam1 "BRISC and BRCA1-A compl... 184 4.9e-13 1
RGD|1359516 - symbol:Babam1 "BRISC and BRCA1 A complex me... 175 1.3e-11 1
UNIPROTKB|I3LT10 - symbol:BABAM1 "Uncharacterized protein... 174 1.6e-11 1
UNIPROTKB|Q5R7L2 - symbol:BABAM1 "BRISC and BRCA1-A compl... 174 1.7e-11 1
UNIPROTKB|E2R851 - symbol:BABAM1 "Uncharacterized protein... 173 2.5e-11 1
UNIPROTKB|Q08E57 - symbol:BABAM1 "BRISC and BRCA1-A compl... 172 3.2e-11 1
UNIPROTKB|Q9NWV8 - symbol:BABAM1 "BRISC and BRCA1-A compl... 171 4.4e-11 1
MGI|MGI:1915501 - symbol:Babam1 "BRISC and BRCA1 A comple... 169 8.2e-11 1
UNIPROTKB|B0KWQ2 - symbol:BABAM1 "BRISC and BRCA1-A compl... 168 1.1e-10 1
UNIPROTKB|J3KQS6 - symbol:BABAM1 "BRISC and BRCA1-A compl... 152 1.1e-08 1
ZFIN|ZDB-GENE-040808-6 - symbol:babam1 "BRISC and BRCA1 A... 146 7.8e-08 1
>TAIR|locus:2123802 [details] [associations]
symbol:AT4G32960 "AT4G32960" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR026126 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0045739 EMBL:AL031804 EMBL:AL161582 eggNOG:NOG76997
GO:GO:0070531 GO:GO:0070552 PANTHER:PTHR15660 EMBL:BT010907
IPI:IPI00516699 PIR:T05304 RefSeq:NP_195022.1 UniGene:At.31623
UniGene:At.67258 ProteinModelPortal:O82638 IntAct:O82638
STRING:O82638 PaxDb:O82638 PRIDE:O82638 DNASU:829433
EnsemblPlants:AT4G32960.1 GeneID:829433 KEGG:ath:AT4G32960
TAIR:At4g32960 HOGENOM:HOG000030040 InParanoid:O82638 OMA:QDDLDIP
PhylomeDB:O82638 ProtClustDB:CLSN2685450 ArrayExpress:O82638
Genevestigator:O82638 Uniprot:O82638
Length = 264
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 160/242 (66%), Positives = 201/242 (83%)
Query: 10 GAGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLS 69
G R+ L P RI +EDI+ C+DVDAES+VEMK+TG NG+P+ R++ +KQAI+LF+++KLS
Sbjct: 12 GTTRYALKPGRIKSEDILICIDVDAESMVEMKTTGTNGRPLIRMECVKQAIILFIHNKLS 71
Query: 70 INPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAK 129
INPDHRFAF TLAK+A+WL+KEF+SD ES + ++RG+S + +ADLT LF+ A+ EAK
Sbjct: 72 INPDHRFAFATLAKSAAWLKKEFTSDAESAVASLRGLSGNKSSSRADLTLLFRAAAQEAK 131
Query: 130 KSRAQNRILRVILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQKVYDALVDA 189
SRAQNRI RVILIYCRSS+RP H+WP+NQKLFT+DV+YLHDKP PDNCPQ VYD+LVDA
Sbjct: 132 VSRAQNRIFRVILIYCRSSMRPTHEWPLNQKLFTLDVMYLHDKPSPDNCPQDVYDSLVDA 191
Query: 190 LEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAADTTNG 249
+EHVSE EGYIFESGQGLAR +F+ M +LL+HPQQRC QDD+DIP SL KK P + +
Sbjct: 192 VEHVSEYEGYIFESGQGLARSVFKPMSMLLTHPQQRCAQDDLDIPMSLAKKVPVTEAASA 251
Query: 250 ED 251
D
Sbjct: 252 VD 253
>UNIPROTKB|Q5M8J0 [details] [associations]
symbol:babam1 "BRISC and BRCA1-A complex member 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070536 "protein K63-linked deubiquitination" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] InterPro:IPR026126
GO:GO:0005737 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0070536 GO:GO:0045739 GO:GO:0031572 CTD:29086 eggNOG:NOG76997
OrthoDB:EOG40P477 GO:GO:0070531 GO:GO:0070552 PANTHER:PTHR15660
EMBL:BC088001 RefSeq:NP_001011287.1 UniGene:Str.15882 STRING:Q5M8J0
GeneID:496740 KEGG:xtr:496740 Xenbase:XB-GENE-5731069
InParanoid:Q5M8J0 Bgee:Q5M8J0 Uniprot:Q5M8J0
Length = 318
Score = 185 (70.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 71/252 (28%), Positives = 111/252 (44%)
Query: 14 FTLPPMRIS-NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINP 72
F L R++ E +I C+D+ +E + K FNG L++ ++ I +FV +K I+
Sbjct: 73 FQLKTPRVNCPEKVIICLDL-SEEMSTQKLESFNGSKANALNSSQKMIEMFVRTKHKIDK 131
Query: 73 DHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSR 132
H FA V A WL F+SD + + + T+ C +L LF L +
Sbjct: 132 RHEFALVVANNEAMWL-SGFTSDPREVCSCLYDLE-TNVCESFNLEGLFNLIQQRTEFPV 189
Query: 133 AQN-------RILRVILIYCRSSVRPQHQWPVNQK------LFTMDVLYLHDKPGPDNCP 179
N ++R+ILIY R + +P N K F DV+Y+H+ +
Sbjct: 190 TDNVQTIPPPYVVRIILIYSRPASQPALNLTDNMKKMLQCPYFFFDVIYIHNGSEEEELR 249
Query: 180 QKVYDALVDALEHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLV 238
K + L+ S+ Y +E S G A L M LL+HP QR Q SL+
Sbjct: 250 WKDIFSFFSGLD--SKGTSYKYEVSITGPALELHNCMARLLAHPLQRPFQSHAAY--SLL 305
Query: 239 KK---SPAADTT 247
++ SP ++ T
Sbjct: 306 EEEEESPESEVT 317
>UNIPROTKB|Q6DJG6 [details] [associations]
symbol:babam1 "BRISC and BRCA1-A complex member 1"
species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0031572 "G2 DNA damage checkpoint"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070536 "protein K63-linked deubiquitination" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] InterPro:IPR026126
GO:GO:0005737 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0070536 GO:GO:0045739 GO:GO:0031572 CTD:29086 GO:GO:0070531
GO:GO:0070552 PANTHER:PTHR15660 EMBL:BC075213 RefSeq:NP_001086385.1
UniGene:Xl.3908 GeneID:444814 KEGG:xla:444814
Xenbase:XB-GENE-5731110 Uniprot:Q6DJG6
Length = 328
Score = 184 (69.8 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 71/253 (28%), Positives = 114/253 (45%)
Query: 14 FTLPPMRIS-NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINP 72
F L R++ E +I C+D+ +E + K FNG L++ ++ I +FV +K I+
Sbjct: 83 FQLKTPRVNCPEKVIICLDL-SEEMSTQKLESFNGSKANALNSSQKMIEMFVRTKHKIDK 141
Query: 73 DHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSR 132
H FA V A WL F+SD + + + T+ C +L LF L +
Sbjct: 142 RHEFALVVANNEAMWL-SGFTSDPREVCSCLYDLE-TNVCESFNLEGLFNLIQQRTEFPV 199
Query: 133 AQN-------RILRVILIYCRSSVRPQHQWPVNQK------LFTMDVLYLHDKPGPDN-C 178
N ++R+ILIY R + +P N K F DV+Y+H+ + C
Sbjct: 200 TDNVQTIPPPYVVRIILIYSRPASQPALALTDNMKKMLQCPYFFFDVIYIHNGSEEEELC 259
Query: 179 PQKVYDALVDALEHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSL 237
+ ++ +L+ S+ Y +E S G A L M LL+HP QR Q SL
Sbjct: 260 WKDIF-GFFSSLD--SKGTSYKYEVSITGPALELHNCMARLLAHPLQRPFQSHAAY--SL 314
Query: 238 VKK---SPAADTT 247
+++ SP ++ T
Sbjct: 315 LEEEEESPESEVT 327
>RGD|1359516 [details] [associations]
symbol:Babam1 "BRISC and BRCA1 A complex member 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0006302
"double-strand break repair" evidence=ISO;ISS] [GO:0010212
"response to ionizing radiation" evidence=ISO;ISS] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISO;ISS] [GO:0045739 "positive regulation of
DNA repair" evidence=ISO;ISS] [GO:0070531 "BRCA1-A complex"
evidence=ISO;ISS] [GO:0070536 "protein K63-linked deubiquitination"
evidence=ISO;ISS] [GO:0070552 "BRISC complex" evidence=ISO;ISS]
InterPro:IPR026126 RGD:1359516 GO:GO:0005737 GO:GO:0016568
GO:GO:0010212 GO:GO:0006302 GO:GO:0070536 GO:GO:0045739
GO:GO:0031572 CTD:29086 eggNOG:NOG76997
GeneTree:ENSGT00390000016934 OrthoDB:EOG40P477 GO:GO:0070531
GO:GO:0070552 PANTHER:PTHR15660 EMBL:BC083685 IPI:IPI00188578
RefSeq:NP_001006965.1 UniGene:Rn.74107 STRING:Q5XIJ6 PRIDE:Q5XIJ6
Ensembl:ENSRNOT00000022938 GeneID:290631 KEGG:rno:290631
UCSC:RGD:1359516 InParanoid:Q5XIJ6 NextBio:631330
Genevestigator:Q5XIJ6 Uniprot:Q5XIJ6
Length = 334
Score = 175 (66.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 65/245 (26%), Positives = 107/245 (43%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ E V K FNG L+ ++ + +FV +K I+ H FA V +
Sbjct: 98 EKVIICLDLSEEMSVP-KLESFNGSRTNALNVSQKMVEMFVRTKHKIDKSHEFALVVVND 156
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
++WL +SD + + + T++C +L LF L + + +N
Sbjct: 157 DSAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPY 214
Query: 137 ILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHDKPGP--DNCPQKVYDALVD 188
++R IL+Y R +PQ P+ + F D++Y+H P D+ K A +
Sbjct: 215 VVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIIYIHSGPEEKEDDMSWKDMFAFMG 274
Query: 189 ALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAADTTN 248
+L+ + Y G A L + LL+HP QR Q SL+++ A
Sbjct: 275 SLDTKGTSYKYAVALA-GPALELHNCVAKLLAHPLQRPCQSHASY--SLLEEDEEAG--E 329
Query: 249 GEDTV 253
GE TV
Sbjct: 330 GEATV 334
>UNIPROTKB|I3LT10 [details] [associations]
symbol:BABAM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070552 "BRISC complex" evidence=IEA] [GO:0070531
"BRCA1-A complex" evidence=IEA] [GO:0045739 "positive regulation of
DNA repair" evidence=IEA] InterPro:IPR026126 GO:GO:0005737
GO:GO:0010212 GO:GO:0006302 GO:GO:0070536 GO:GO:0045739
GO:GO:0031572 GeneTree:ENSGT00390000016934 OMA:VQIRTPR
GO:GO:0070531 GO:GO:0070552 PANTHER:PTHR15660
Ensembl:ENSSSCT00000025461 Uniprot:I3LT10
Length = 324
Score = 174 (66.3 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 68/247 (27%), Positives = 113/247 (45%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 88 EKVIICLDLSEEMSLPKLES--FNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVN 145
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 146 DDTAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPP 203
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F DV+Y+H+ + + K A +
Sbjct: 204 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGAEEKEEEMSWKDMFAFM 263
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAADT 246
+L+ ++ Y +E G A L M LL+HP QR Q SL+++ A
Sbjct: 264 GSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQSHASY--SLLEEDDEA-- 317
Query: 247 TNGEDTV 253
T E TV
Sbjct: 318 TEVEATV 324
>UNIPROTKB|Q5R7L2 [details] [associations]
symbol:BABAM1 "BRISC and BRCA1-A complex member 1"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0031572 "G2 DNA damage checkpoint"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070536 "protein K63-linked deubiquitination" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] InterPro:IPR026126
GO:GO:0005737 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0070536 GO:GO:0045739 GO:GO:0031572 CTD:29086 GO:GO:0070531
GO:GO:0070552 PANTHER:PTHR15660 EMBL:CR860103 RefSeq:NP_001126315.1
UniGene:Pab.14397 GeneID:100173294 KEGG:pon:100173294
InParanoid:Q5R7L2 Uniprot:Q5R7L2
Length = 329
Score = 174 (66.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 68/247 (27%), Positives = 113/247 (45%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 93 EKVIICLDLSEEMSLPKLES--FNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVN 150
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 151 DDTAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPP 208
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F DV+Y+H+ + + K A +
Sbjct: 209 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGTEEKEEEMSWKDMFAFM 268
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAADT 246
+L+ ++ Y +E G A L M LL+HP QR Q SL+++ A
Sbjct: 269 GSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQSHASY--SLLEEEDEA-- 322
Query: 247 TNGEDTV 253
T E TV
Sbjct: 323 TEVEATV 329
>UNIPROTKB|E2R851 [details] [associations]
symbol:BABAM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070552 "BRISC complex" evidence=IEA]
[GO:0070531 "BRCA1-A complex" evidence=IEA] [GO:0045739 "positive
regulation of DNA repair" evidence=IEA] InterPro:IPR026126
GO:GO:0045739 GeneTree:ENSGT00390000016934 OMA:VQIRTPR
GO:GO:0070531 GO:GO:0070552 PANTHER:PTHR15660 EMBL:AAEX03012297
Ensembl:ENSCAFT00000024511 Uniprot:E2R851
Length = 336
Score = 173 (66.0 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 70/249 (28%), Positives = 116/249 (46%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 100 EKVIICLDLSEEMSLSKLES--FNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVN 157
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 158 DDIAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPP 215
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHDKPGPDNCPQKVY--D--A 185
++R IL+Y R +PQ P+ + F DV+Y+H+ G D +++ D A
Sbjct: 216 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHN--GADEKEEEMSWKDMFA 273
Query: 186 LVDALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAA 244
+ +L+ ++ Y +E G A L M LL+HP QR Q SL+++ A
Sbjct: 274 FMGSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQSHASY--SLLEEDDEA 329
Query: 245 DTTNGEDTV 253
T E TV
Sbjct: 330 --TEVEATV 336
>UNIPROTKB|Q08E57 [details] [associations]
symbol:BABAM1 "BRISC and BRCA1-A complex member 1"
species:9913 "Bos taurus" [GO:0031572 "G2 DNA damage checkpoint"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0070536 "protein K63-linked deubiquitination"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0010212 "response to ionizing radiation"
evidence=ISS] [GO:0070552 "BRISC complex" evidence=ISS] [GO:0016568
"chromatin modification" evidence=IEA] InterPro:IPR026126
GO:GO:0005737 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0070536 GO:GO:0045739 GO:GO:0031572 EMBL:BC123408
IPI:IPI00697886 RefSeq:NP_001070269.1 UniGene:Bt.22247
STRING:Q08E57 PRIDE:Q08E57 Ensembl:ENSBTAT00000047445 GeneID:504517
KEGG:bta:504517 CTD:29086 eggNOG:NOG76997
GeneTree:ENSGT00390000016934 InParanoid:Q08E57 OMA:VQIRTPR
OrthoDB:EOG40P477 NextBio:20866703 ArrayExpress:Q08E57
GO:GO:0070531 GO:GO:0070552 PANTHER:PTHR15660 Uniprot:Q08E57
Length = 332
Score = 172 (65.6 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 68/248 (27%), Positives = 113/248 (45%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ +E + K FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 96 EKVIICLDL-SEEMALPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVND 154
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 155 DTAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPY 212
Query: 137 ILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHDKPGPDNCPQKVY--D--AL 186
++R IL+Y R +PQ P+ + F DV+Y+H+ G D +++ D A
Sbjct: 213 VVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHN--GADEKEEEMSWKDMFAF 270
Query: 187 VDALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAAD 245
+ +L+ ++ Y +E G A L M LL+HP QR Q SL+++ A
Sbjct: 271 MGSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQSHASY--SLLEEDDEA- 325
Query: 246 TTNGEDTV 253
T E TV
Sbjct: 326 -TEVEATV 332
>UNIPROTKB|Q9NWV8 [details] [associations]
symbol:BABAM1 "BRISC and BRCA1-A complex member 1"
species:9606 "Homo sapiens" [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0070552 "BRISC complex" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0010212 "response to
ionizing radiation" evidence=IMP] [GO:0031572 "G2 DNA damage
checkpoint" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IMP] [GO:0070536 "protein K63-linked
deubiquitination" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070531 "BRCA1-A complex"
evidence=IDA] InterPro:IPR026126 GO:GO:0005737 GO:GO:0016568
GO:GO:0010212 GO:GO:0006302 GO:GO:0070536 GO:GO:0045739
GO:GO:0031572 CTD:29086 eggNOG:NOG76997 OMA:VQIRTPR GO:GO:0070531
GO:GO:0070552 PANTHER:PTHR15660 EMBL:AF161491 EMBL:AL136692
EMBL:AK000578 EMBL:AK299493 EMBL:AK301193 EMBL:CR533526
EMBL:AC104522 EMBL:BC000788 EMBL:BC006244 EMBL:BC091491
IPI:IPI00101987 IPI:IPI00910708 IPI:IPI01011341
RefSeq:NP_001028721.1 RefSeq:NP_054892.2 UniGene:Hs.190722
ProteinModelPortal:Q9NWV8 IntAct:Q9NWV8 STRING:Q9NWV8
PhosphoSite:Q9NWV8 DMDM:74734678 PaxDb:Q9NWV8 PRIDE:Q9NWV8
DNASU:29086 Ensembl:ENST00000359435 Ensembl:ENST00000448635
GeneID:29086 KEGG:hsa:29086 UCSC:uc002nfu.3 UCSC:uc010xpl.1
GeneCards:GC19P017379 H-InvDB:HIX0014885 HGNC:HGNC:25008 MIM:612766
neXtProt:NX_Q9NWV8 PharmGKB:PA162378767 ChiTaRS:BABAM1
GenomeRNAi:29086 NextBio:52072 Bgee:Q9NWV8 CleanEx:HS_C19orf62
Genevestigator:Q9NWV8 Uniprot:Q9NWV8
Length = 329
Score = 171 (65.3 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 61/222 (27%), Positives = 103/222 (46%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 93 EKVIICLDLSEEMSLPKLES--FNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVN 150
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 151 DDTAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPP 208
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F DV+Y+H+ + + K A +
Sbjct: 209 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGTEEKEEEMSWKDMFAFM 268
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 269 GSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQ 308
>MGI|MGI:1915501 [details] [associations]
symbol:Babam1 "BRISC and BRCA1 A complex member 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0010212
"response to ionizing radiation" evidence=ISO] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISO] [GO:0045739 "positive regulation of DNA
repair" evidence=ISO] [GO:0070531 "BRCA1-A complex" evidence=ISO]
[GO:0070536 "protein K63-linked deubiquitination" evidence=ISO]
[GO:0070552 "BRISC complex" evidence=ISO] InterPro:IPR026126
MGI:MGI:1915501 GO:GO:0005737 GO:GO:0016568 GO:GO:0010212
GO:GO:0006302 GO:GO:0070536 GO:GO:0045739 GO:GO:0031572 CTD:29086
eggNOG:NOG76997 GeneTree:ENSGT00390000016934 OMA:VQIRTPR
OrthoDB:EOG40P477 GO:GO:0070531 GO:GO:0070552 PANTHER:PTHR15660
EMBL:AK003366 EMBL:AK077402 EMBL:AK078265 EMBL:AK147083
EMBL:BC005692 IPI:IPI00165711 RefSeq:NP_080912.2 UniGene:Mm.21749
ProteinModelPortal:Q3UI43 STRING:Q3UI43 PhosphoSite:Q3UI43
PaxDb:Q3UI43 PRIDE:Q3UI43 Ensembl:ENSMUST00000002473 GeneID:68251
KEGG:mmu:68251 UCSC:uc009mdb.2 InParanoid:Q9CTJ4 NextBio:326830
Bgee:Q3UI43 CleanEx:MM_5430437P03RIK Genevestigator:Q3UI43
Uniprot:Q3UI43
Length = 333
Score = 169 (64.5 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 58/221 (26%), Positives = 101/221 (45%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ E V K FNG L+ ++ + +FV +K I+ H FA V +
Sbjct: 97 EKVIICLDLSEEMSVP-KLESFNGSRTNALNVSQKMVEMFVRTKHKIDKSHEFALVVVND 155
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
++WL +SD + + + T++C +L LF L + + +N
Sbjct: 156 DSAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPY 213
Query: 137 ILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALVD 188
++R IL+Y R +PQ P+ + F D++Y+H+ + ++ K A +
Sbjct: 214 VVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIVYIHNGTEEKEEDMSWKDMFAFMG 273
Query: 189 ALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 274 SLD--TKGASYKYEVALAGPALELHNCMAKLLAHPLQRPCQ 312
>UNIPROTKB|B0KWQ2 [details] [associations]
symbol:BABAM1 "BRISC and BRCA1-A complex member 1"
species:9483 "Callithrix jacchus" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070536 "protein K63-linked deubiquitination" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] InterPro:IPR026126
GO:GO:0005737 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0070536 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 PANTHER:PTHR15660 EMBL:DP000584 Uniprot:B0KWQ2
Length = 329
Score = 168 (64.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/247 (27%), Positives = 113/247 (45%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 93 EKVIICLDLSEEMSLPKLES--FNGSKTNALNISQKMIEMFVRTKHKIDKSHEFALVVVN 150
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 151 DDTAWL-SGLTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTEFPVTENVQTIPPP 208
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F D++Y+H+ + + K A +
Sbjct: 209 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDLVYIHNGAEEKEEEMSWKDMFAFM 268
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAADT 246
+L+ ++ Y +E G A L M LL+HP QR Q SL+++ A
Sbjct: 269 GSLD--TKGTSYKYEVALAGPALELHNCMVKLLAHPLQRPCQSHASY--SLLEEEDEA-- 322
Query: 247 TNGEDTV 253
T E TV
Sbjct: 323 TEVEATV 329
>UNIPROTKB|J3KQS6 [details] [associations]
symbol:BABAM1 "BRISC and BRCA1-A complex member 1"
species:9606 "Homo sapiens" [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0070531 "BRCA1-A complex" evidence=IEA]
[GO:0070552 "BRISC complex" evidence=IEA] InterPro:IPR026126
EMBL:AC010463 GO:GO:0045739 GO:GO:0070531 GO:GO:0070552
PANTHER:PTHR15660 EMBL:AC104522 HGNC:HGNC:25008 ChiTaRS:BABAM1
ProteinModelPortal:J3KQS6 Ensembl:ENST00000447614 Uniprot:J3KQS6
Length = 329
Score = 152 (58.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 57/222 (25%), Positives = 101/222 (45%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 93 EKVIICLDLSEEMSLPKLES--FNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVN 150
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +++ + + +N
Sbjct: 151 DDTAWL-SGLTSDPRELCSCLYDLE-TASCSTFNISGASPARQQKTELPVTENVQTIPPP 208
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F DV+Y+H+ + + K A +
Sbjct: 209 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGTEEKEEEMSWKDMFAFM 268
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 269 GSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQ 308
>ZFIN|ZDB-GENE-040808-6 [details] [associations]
symbol:babam1 "BRISC and BRCA1 A complex member 1"
species:7955 "Danio rerio" [GO:0045739 "positive regulation of DNA
repair" evidence=IEA;ISS] [GO:0070531 "BRCA1-A complex"
evidence=IEA;ISS] [GO:0070552 "BRISC complex" evidence=IEA;ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISS] [GO:0010212 "response to ionizing radiation"
evidence=ISS] [GO:0070536 "protein K63-linked deubiquitination"
evidence=ISS] [GO:0031572 "G2 DNA damage checkpoint" evidence=ISS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR026126 ZFIN:ZDB-GENE-040808-6 GO:GO:0005737
GO:GO:0016568 GO:GO:0010212 GO:GO:0006302 GO:GO:0070536
GO:GO:0045739 GO:GO:0031572 CTD:29086 eggNOG:NOG76997
GeneTree:ENSGT00390000016934 GO:GO:0070531 GO:GO:0070552
PANTHER:PTHR15660 EMBL:BC079500 IPI:IPI00507260
RefSeq:NP_001003752.1 UniGene:Dr.78771 STRING:Q6AXK4
Ensembl:ENSDART00000008980 Ensembl:ENSDART00000122262 GeneID:445296
KEGG:dre:445296 NextBio:20832042 Bgee:Q6AXK4 Uniprot:Q6AXK4
Length = 370
Score = 146 (56.5 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 68/246 (27%), Positives = 106/246 (43%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S NG L+ ++ I +FV +K I+ H FA V +
Sbjct: 135 EKVIICLDLSEEMSLQKLES--INGSKTNALNISQKMIEMFVRTKHKIDKRHEFALVVVN 192
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQNR------ 136
A WL F+SD + + + T+ C +L LF + + + + +N
Sbjct: 193 DDAMWL-SGFTSDPRELCSCLYDLE-TNVCESFNLEDLFNVILQKIELPQMENIQTIPPP 250
Query: 137 -ILRVILIYCRSSVRPQHQWP---VNQKL----FTMDVLYLHDKPGPDNCPQKVYDALVD 188
++R +L++ R + Q P V + L F DV++LH+ D
Sbjct: 251 FVVRTLLVFSRHAGMLQFN-PSDAVKKMLQSPYFFFDVVFLHNGTEEQTEDTSWKDVYAS 309
Query: 189 ALEHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKKSPAADTT 247
E ++ Y FE S G A L M LL HP QR Q SL++ DT
Sbjct: 310 FCELDTKGMCYRFEVSLCGPAIELHNCMAKLLCHPLQRPFQSHASY--SLLEDE---DTL 364
Query: 248 NGEDTV 253
E TV
Sbjct: 365 ENEATV 370
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 259 259 0.00088 114 3 11 22 0.46 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 611 (65 KB)
Total size of DFA: 191 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.34u 0.12s 21.46t Elapsed: 00:00:01
Total cpu time: 21.34u 0.12s 21.46t Elapsed: 00:00:01
Start: Mon May 20 18:40:20 2013 End: Mon May 20 18:40:21 2013