BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025034
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain
Length = 192
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 37 LVEMKSTGFNGKPI-TRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSD 95
L++ NG I TR +A K + + N K++ NP++ +T+ + + + D
Sbjct: 8 LIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRD 67
Query: 96 IESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVI 141
L+A+ + D + +LA + + RI+ +
Sbjct: 68 YGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFV 113
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 139 RVILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQKVYDALVDALEHVSENEG 198
+V+L+ C V P+ P +Q +F +D++ L PG ++ + AL
Sbjct: 293 KVVLVQCILPVNPEAN-PSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKST 351
Query: 199 YIF 201
YI+
Sbjct: 352 YIY 354
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 173 PGPDNCPQKVYDALVDALEHVSEN 196
P P++CPQ +Y+ +V H E+
Sbjct: 239 PRPEDCPQDIYNVMVQCWAHKPED 262
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 173 PGPDNCPQKVYDALVDALEHVSEN 196
P P++CPQ +Y+ +V H E+
Sbjct: 239 PRPEDCPQDIYNVMVQCWAHKPED 262
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 173 PGPDNCPQKVYDALVDALEHVSEN 196
P P++CPQ +Y+ +V H E+
Sbjct: 235 PRPEDCPQDIYNVMVQCWAHKPED 258
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 173 PGPDNCPQKVYDALVDALEHVSEN 196
P P++CPQ +Y+ +V H E+
Sbjct: 235 PRPEDCPQDIYNVMVQCWAHKPED 258
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 173 PGPDNCPQKVYDALVDALEHVSEN 196
P P++CPQ +Y+ +V H E+
Sbjct: 245 PRPEDCPQDIYNVMVQCWAHKPED 268
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 173 PGPDNCPQKVYDALVDALEHVSEN 196
P P++CPQ +Y+ +V H E+
Sbjct: 235 PRPEDCPQDIYNVMVQCWAHKPED 258
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 173 PGPDNCPQKVYDALVDALEHVSEN 196
P P++CPQ +Y+ +V H E+
Sbjct: 245 PRPEDCPQDIYNVMVQCWAHKPED 268
>pdb|3TA9|A Chain A, Beta-Glucosidase A From The Halothermophile H. Orenii
pdb|3TA9|B Chain B, Beta-Glucosidase A From The Halothermophile H. Orenii
Length = 458
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 141 ILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKP----GPDNCPQKVYDALVDALEHVSEN 196
I Y R VR + LF +V+ + D+P G + PQ +YD LV + ++
Sbjct: 300 INYYSRMVVRHK----PGDNLFNAEVVKMEDRPSTEMGWEIYPQGLYDILVRVNKEYTDK 355
Query: 197 EGYIFESG 204
YI E+G
Sbjct: 356 PLYITENG 363
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 49 PITRLDAMKQAILLFVNSKLSINPDH---RFAFVT-----LAKTAS-WLRKEFSSDIEST 99
P+TR D + L PDH R T LA TA+ W ++ +D ES
Sbjct: 42 PVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESL 101
Query: 100 LTAVRGISATSACGQADLTHL-FKLASHEAKKS 131
G+ +ACG D TH F+ E KS
Sbjct: 102 TDYDMGVVTANACGGFDFTHREFRKLWSEGPKS 134
>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
Length = 1642
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 52 RLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSA 111
R +A+ Q + + + DH +A T ++SWL V GIS
Sbjct: 1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEII 1084
Query: 112 CG 113
CG
Sbjct: 1085 CG 1086
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,187,638
Number of Sequences: 62578
Number of extensions: 268517
Number of successful extensions: 739
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 12
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)