BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025034
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M8J0|BABA1_XENTR BRISC and BRCA1-A complex member 1 OS=Xenopus tropicalis GN=babam1
PE=2 SV=1
Length = 318
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ +E + K FNG L++ ++ I +FV +K I+ H FA V
Sbjct: 84 EKVIICLDL-SEEMSTQKLESFNGSKANALNSSQKMIEMFVRTKHKIDKRHEFALVVANN 142
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
A WL F+SD + + + T+ C +L LF L + N
Sbjct: 143 EAMWLSG-FTSDPREVCSCLYDLE-TNVCESFNLEGLFNLIQQRTEFPVTDNVQTIPPPY 200
Query: 137 ILRVILIYCRSSVRPQHQWPVNQK------LFTMDVLYLHDKPGPDNCPQKVYDALVDAL 190
++R+ILIY R + +P N K F DV+Y+H+ + K + L
Sbjct: 201 VVRIILIYSRPASQPALNLTDNMKKMLQCPYFFFDVIYIHNGSEEEELRWKDIFSFFSGL 260
Query: 191 EHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQ 228
+ S+ Y +E S G A L M LL+HP QR Q
Sbjct: 261 D--SKGTSYKYEVSITGPALELHNCMARLLAHPLQRPFQ 297
>sp|Q6DJG6|BABA1_XENLA BRISC and BRCA1-A complex member 1 OS=Xenopus laevis GN=babam1 PE=2
SV=1
Length = 328
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ +E + K FNG L++ ++ I +FV +K I+ H FA V
Sbjct: 94 EKVIICLDL-SEEMSTQKLESFNGSKANALNSSQKMIEMFVRTKHKIDKRHEFALVVANN 152
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
A WL F+SD + + + T+ C +L LF L + N
Sbjct: 153 EAMWLSG-FTSDPREVCSCLYDLE-TNVCESFNLEGLFNLIQQRTEFPVTDNVQTIPPPY 210
Query: 137 ILRVILIYCRSSVRPQHQWPVNQK------LFTMDVLYLHDKPGPDNCPQKVYDALVDAL 190
++R+ILIY R + +P N K F DV+Y+H+ + K +L
Sbjct: 211 VVRIILIYSRPASQPALALTDNMKKMLQCPYFFFDVIYIHNGSEEEELCWKDIFGFFSSL 270
Query: 191 EHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQ 228
+ S+ Y +E S G A L M LL+HP QR Q
Sbjct: 271 D--SKGTSYKYEVSITGPALELHNCMARLLAHPLQRPFQ 307
>sp|Q08E57|BABA1_BOVIN BRISC and BRCA1-A complex member 1 OS=Bos taurus GN=BABAM1 PE=2
SV=1
Length = 332
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 25/223 (11%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ +E + K FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 96 EKVIICLDL-SEEMALPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVND 154
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 155 DTAWLSG-LTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPY 212
Query: 137 ILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHDKPGPDNCPQKV----YDAL 186
++R IL+Y R +PQ P+ + F DV+Y+H+ G D +++ A
Sbjct: 213 VVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHN--GADEKEEEMSWKDMFAF 270
Query: 187 VDALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+ +L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 271 MGSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQ 311
>sp|Q9NWV8|BABA1_HUMAN BRISC and BRCA1-A complex member 1 OS=Homo sapiens GN=BABAM1 PE=1
SV=1
Length = 329
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 23/222 (10%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 93 EKVIICLDLSEEMSLPKLES--FNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVN 150
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 151 DDTAWLSG-LTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPP 208
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F DV+Y+H+ + + K A +
Sbjct: 209 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGTEEKEEEMSWKDMFAFM 268
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 269 GSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQ 308
>sp|Q5R7L2|BABA1_PONAB BRISC and BRCA1-A complex member 1 OS=Pongo abelii GN=BABAM1 PE=2
SV=1
Length = 329
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 23/222 (10%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 93 EKVIICLDLSEEMSLPKLES--FNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVN 150
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 151 DDTAWLSG-LTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPP 208
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F DV+Y+H+ + + K A +
Sbjct: 209 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGTEEKEEEMSWKDMFAFM 268
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 269 GSLD--TKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQ 308
>sp|Q5XIJ6|BABA1_RAT BRISC and BRCA1-A complex member 1 OS=Rattus norvegicus GN=Babam1
PE=2 SV=1
Length = 334
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 19/220 (8%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ E V K FNG L+ ++ + +FV +K I+ H FA V +
Sbjct: 98 EKVIICLDLSEEMSVP-KLESFNGSRTNALNVSQKMVEMFVRTKHKIDKSHEFALVVVND 156
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
++WL +SD + + + T++C +L LF L + + +N
Sbjct: 157 DSAWLSG-LTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPY 214
Query: 137 ILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHDKP--GPDNCPQKVYDALVD 188
++R IL+Y R +PQ P+ + F D++Y+H P D+ K A +
Sbjct: 215 VVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIIYIHSGPEEKEDDMSWKDMFAFMG 274
Query: 189 ALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQ 228
+L+ + Y + G A L + LL+HP QR Q
Sbjct: 275 SLDTKGTSYKYAV-ALAGPALELHNCVAKLLAHPLQRPCQ 313
>sp|Q3UI43|BABA1_MOUSE BRISC and BRCA1-A complex member 1 OS=Mus musculus GN=Babam1 PE=2
SV=1
Length = 333
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK 83
E +I C+D+ E V K FNG L+ ++ + +FV +K I+ H FA V +
Sbjct: 97 EKVIICLDLSEEMSVP-KLESFNGSRTNALNVSQKMVEMFVRTKHKIDKSHEFALVVVND 155
Query: 84 TASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------R 136
++WL +SD + + + T++C +L LF L + + +N
Sbjct: 156 DSAWLSG-LTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPY 213
Query: 137 ILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALVD 188
++R IL+Y R +PQ P+ + F D++Y+H+ + ++ K A +
Sbjct: 214 VVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIVYIHNGTEEKEEDMSWKDMFAFMG 273
Query: 189 ALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 274 SLD--TKGASYKYEVALAGPALELHNCMAKLLAHPLQRPCQ 312
>sp|B0KWQ2|BABA1_CALJA BRISC and BRCA1-A complex member 1 OS=Callithrix jacchus GN=BABAM1
PE=3 SV=2
Length = 329
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 23/222 (10%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S FNG L+ ++ I +FV +K I+ H FA V +
Sbjct: 93 EKVIICLDLSEEMSLPKLES--FNGSKTNALNISQKMIEMFVRTKHKIDKSHEFALVVVN 150
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
+WL +SD + + + T++C +L LF L + + +N
Sbjct: 151 DDTAWLSG-LTSDPRELCSCLYDLE-TASCSTFNLEGLFSLIQQKTEFPVTENVQTIPPP 208
Query: 136 RILRVILIYCRSSVRPQHQW--PVNQKL----FTMDVLYLHD--KPGPDNCPQKVYDALV 187
++R IL+Y R +PQ P+ + F D++Y+H+ + + K A +
Sbjct: 209 YVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDLVYIHNGAEEKEEEMSWKDMFAFM 268
Query: 188 DALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQRCVQ 228
+L+ ++ Y +E G A L M LL+HP QR Q
Sbjct: 269 GSLD--TKGTSYKYEVALAGPALELHNCMVKLLAHPLQRPCQ 308
>sp|Q6AXK4|BABA1_DANRE BRISC and BRCA1-A complex member 1 OS=Danio rerio GN=babam1 PE=2
SV=2
Length = 370
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 24 EDIIFCVDVDAE-SLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA 82
E +I C+D+ E SL +++S NG L+ ++ I +FV +K I+ H FA V +
Sbjct: 135 EKVIICLDLSEEMSLQKLES--INGSKTNALNISQKMIEMFVRTKHKIDKRHEFALVVVN 192
Query: 83 KTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN------- 135
A WL F+SD + + + T+ C +L LF + + + + +N
Sbjct: 193 DDAMWLSG-FTSDPRELCSCLYDLE-TNVCESFNLEDLFNVILQKIELPQMENIQTIPPP 250
Query: 136 RILRVILIYCR----------SSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQKVYDA 185
++R +L++ R +V+ Q P F DV++LH+ D
Sbjct: 251 FVVRTLLVFSRHAGMLQFNPSDAVKKMLQSP----YFFFDVVFLHNGTEEQTEDTSWKDV 306
Query: 186 LVDALEHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQ 228
E ++ Y FE S G A L M LL HP QR Q
Sbjct: 307 YASFCELDTKGMCYRFEVSLCGPAIELHNCMAKLLCHPLQRPFQ 350
>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis
thaliana GN=MBP1 PE=1 SV=1
Length = 386
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 51 TRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATS 110
+RL A +A+ L +K NP++ +T+A + +SD+ L + G+
Sbjct: 24 SRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGL---D 80
Query: 111 ACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVR 150
G+ +LT ++A K + +N+ R+I ++ S ++
Sbjct: 81 VGGEINLTAAIQIAQLALKHRQNKNQRQRII-VFAGSPIK 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,893,941
Number of Sequences: 539616
Number of extensions: 3561527
Number of successful extensions: 8006
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7988
Number of HSP's gapped (non-prelim): 16
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)