Query 025034
Match_columns 259
No_of_seqs 58 out of 60
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 09:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01452 VWA_26S_proteasome_sub 98.5 1.6E-06 3.4E-11 76.4 12.8 168 23-207 3-176 (187)
2 cd01453 vWA_transcription_fact 98.3 1.9E-05 4.2E-10 68.1 13.0 135 25-170 5-145 (183)
3 cd01458 vWA_ku Ku70/Ku80 N-ter 98.1 4.8E-05 1.1E-09 66.6 12.7 155 24-187 2-187 (218)
4 PF13519 VWA_2: von Willebrand 97.9 0.00017 3.8E-09 57.9 11.4 162 25-214 1-171 (172)
5 smart00327 VWA von Willebrand 97.7 0.00075 1.6E-08 54.4 12.1 154 24-201 2-164 (177)
6 cd00198 vWFA Von Willebrand fa 97.7 0.0013 2.9E-08 51.0 12.3 107 24-145 1-109 (161)
7 cd01467 vWA_BatA_type VWA BatA 97.7 0.00094 2E-08 55.5 11.9 133 25-171 4-142 (180)
8 PRK13685 hypothetical protein; 97.6 0.00021 4.6E-09 66.8 8.6 76 23-109 88-163 (326)
9 cd01466 vWA_C3HC4_type VWA C3H 97.6 0.00095 2.1E-08 55.4 11.2 106 25-149 2-112 (155)
10 KOG2884 26S proteasome regulat 97.6 0.0039 8.5E-08 57.1 15.6 175 22-214 2-182 (259)
11 cd01472 vWA_collagen von Wille 97.6 0.0013 2.8E-08 54.4 11.6 104 25-144 2-110 (164)
12 PF04056 Ssl1: Ssl1-like; Int 97.6 0.00062 1.3E-08 60.6 10.2 109 29-148 1-112 (193)
13 cd01456 vWA_ywmD_type VWA ywmD 97.6 0.0017 3.6E-08 56.1 12.6 89 10-107 4-111 (206)
14 cd01465 vWA_subgroup VWA subgr 97.4 0.0044 9.5E-08 50.7 12.2 86 25-129 2-89 (170)
15 cd01480 vWA_collagen_alpha_1-V 97.3 0.0048 1E-07 52.6 12.1 74 22-108 1-83 (186)
16 TIGR03436 acidobact_VWFA VWFA- 97.3 0.0041 8.9E-08 56.6 12.0 70 23-108 53-122 (296)
17 cd01460 vWA_midasin VWA_Midasi 97.2 0.0029 6.4E-08 58.7 10.6 112 23-148 60-175 (266)
18 cd01474 vWA_ATR ATR (Anthrax T 97.2 0.0038 8.2E-08 53.0 10.4 90 23-128 4-93 (185)
19 cd01451 vWA_Magnesium_chelatas 97.1 0.011 2.5E-07 49.9 12.5 70 26-109 3-73 (178)
20 cd01470 vWA_complement_factors 97.1 0.0064 1.4E-07 52.0 10.9 71 25-108 2-76 (198)
21 cd01463 vWA_VGCC_like VWA Volt 97.1 0.0098 2.1E-07 50.7 12.0 87 22-127 12-107 (190)
22 PF13768 VWA_3: von Willebrand 97.1 0.0047 1E-07 50.5 9.5 85 25-125 2-88 (155)
23 PRK13406 bchD magnesium chelat 97.1 0.0071 1.5E-07 61.6 12.3 107 22-149 400-511 (584)
24 PF00092 VWA: von Willebrand f 97.0 0.016 3.4E-07 47.1 11.8 105 25-145 1-111 (178)
25 PF03731 Ku_N: Ku70/Ku80 N-ter 97.0 0.011 2.4E-07 51.5 11.5 137 26-169 2-172 (224)
26 cd01450 vWFA_subfamily_ECM Von 96.9 0.026 5.7E-07 44.9 12.0 72 25-109 2-75 (161)
27 cd01482 vWA_collagen_alphaI-XI 96.8 0.026 5.7E-07 46.9 11.5 104 25-144 2-110 (164)
28 COG1240 ChlD Mg-chelatase subu 96.6 0.026 5.6E-07 52.6 11.0 114 22-152 77-194 (261)
29 cd01471 vWA_micronemal_protein 96.6 0.041 8.8E-07 46.3 11.3 92 25-128 2-98 (186)
30 cd01475 vWA_Matrilin VWA_Matri 96.5 0.018 4E-07 50.6 9.2 73 23-109 2-77 (224)
31 cd01477 vWA_F09G8-8_type VWA F 96.4 0.045 9.7E-07 48.0 11.1 71 22-105 18-96 (193)
32 cd01469 vWA_integrins_alpha_su 96.3 0.084 1.8E-06 44.7 11.9 108 25-148 2-116 (177)
33 TIGR02031 BchD-ChlD magnesium 96.3 0.051 1.1E-06 55.3 12.1 106 25-148 409-516 (589)
34 cd01461 vWA_interalpha_trypsin 96.3 0.089 1.9E-06 42.9 11.3 71 23-108 2-76 (171)
35 TIGR00868 hCaCC calcium-activa 95.9 0.1 2.2E-06 55.8 12.7 79 10-104 293-376 (863)
36 cd01476 VWA_integrin_invertebr 95.9 0.17 3.8E-06 41.3 11.3 69 25-108 2-75 (163)
37 TIGR03788 marine_srt_targ mari 95.9 0.12 2.6E-06 52.3 12.4 74 21-109 269-346 (596)
38 TIGR00578 ku70 ATP-dependent D 95.6 0.12 2.7E-06 52.6 11.3 143 23-171 10-183 (584)
39 cd01462 VWA_YIEM_type VWA YIEM 95.5 0.38 8.3E-06 39.0 11.9 87 25-128 2-88 (152)
40 PTZ00441 sporozoite surface pr 95.1 0.23 4.9E-06 51.0 11.4 109 23-144 42-156 (576)
41 cd01481 vWA_collagen_alpha3-VI 94.8 0.65 1.4E-05 39.3 11.6 89 24-127 1-92 (165)
42 TIGR02442 Cob-chelat-sub cobal 94.8 0.44 9.5E-06 48.9 12.4 73 23-109 465-538 (633)
43 cd01454 vWA_norD_type norD typ 94.3 0.9 1.9E-05 37.9 11.4 73 25-110 2-82 (174)
44 cd01464 vWA_subfamily VWA subf 93.9 0.2 4.4E-06 42.0 6.7 58 25-95 5-65 (176)
45 cd01457 vWA_ORF176_type VWA OR 93.5 1.2 2.7E-05 38.2 11.0 78 23-109 2-79 (199)
46 cd01473 vWA_CTRP CTRP for CS 93.4 0.98 2.1E-05 39.2 10.2 110 25-149 2-122 (192)
47 KOG2807 RNA polymerase II tran 92.8 0.93 2E-05 44.0 9.9 112 23-146 60-173 (378)
48 cd01455 vWA_F11C1-5a_type Von 91.8 0.5 1.1E-05 42.2 6.4 75 25-108 2-86 (191)
49 PF11265 Med25_VWA: Mediator c 88.1 2.1 4.6E-05 39.3 7.4 79 22-110 12-103 (226)
50 COG5148 RPN10 26S proteasome r 86.2 12 0.00025 34.3 10.8 174 22-215 2-182 (243)
51 cd01468 trunk_domain trunk dom 83.8 3.4 7.4E-05 36.9 6.4 52 25-88 5-56 (239)
52 PF04811 Sec23_trunk: Sec23/Se 82.3 3.2 6.9E-05 36.9 5.7 52 25-88 5-56 (243)
53 KOG1985 Vesicle coat complex C 75.3 7.7 0.00017 41.7 6.7 63 12-88 285-347 (887)
54 PHA02723 hypothetical protein; 70.8 3.5 7.6E-05 31.4 2.2 23 140-170 48-71 (77)
55 cd01479 Sec24-like Sec24-like: 63.9 21 0.00046 32.2 6.3 51 24-88 4-57 (244)
56 KOG3768 DEAD box RNA helicase 60.4 19 0.0004 38.1 5.7 73 26-109 4-83 (888)
57 COG5151 SSL1 RNA polymerase II 60.4 55 0.0012 32.1 8.5 177 24-224 88-271 (421)
58 cd01478 Sec23-like Sec23-like: 53.7 64 0.0014 29.8 7.7 47 25-88 5-51 (267)
59 PF11443 DUF2828: Domain of un 50.4 96 0.0021 32.0 8.9 104 23-145 340-444 (534)
60 COG1430 Uncharacterized conser 47.2 31 0.00067 29.0 4.1 52 140-209 43-107 (126)
61 KOG2326 DNA-binding subunit of 46.2 3.3E+02 0.0071 29.0 11.9 119 23-148 4-139 (669)
62 KOG1984 Vesicle coat complex C 42.9 32 0.0007 37.6 4.4 65 13-88 407-471 (1007)
63 PRK14639 hypothetical protein; 41.6 36 0.00077 28.8 3.7 34 178-211 42-77 (140)
64 PF03710 GlnE: Glutamate-ammon 38.8 22 0.00048 32.3 2.2 42 163-205 146-195 (247)
65 PRK02001 hypothetical protein; 38.1 28 0.00061 30.0 2.6 43 178-222 47-92 (152)
66 PLN00162 transport protein sec 36.5 1E+02 0.0022 32.9 6.8 63 10-89 108-173 (761)
67 KOG1986 Vesicle coat complex C 33.3 1.4E+02 0.0031 32.0 7.1 66 11-93 109-174 (745)
68 cd06660 Aldo_ket_red Aldo-keto 32.8 73 0.0016 28.3 4.5 31 161-191 108-138 (285)
69 PRK14635 hypothetical protein; 31.2 46 0.00099 28.7 2.8 44 179-222 55-101 (162)
70 cd04143 Rhes_like Rhes_like su 30.6 4E+02 0.0087 23.9 10.4 41 113-153 155-197 (247)
71 PRK14633 hypothetical protein; 29.2 49 0.0011 28.2 2.6 31 178-208 48-80 (150)
72 PRK14645 hypothetical protein; 28.3 51 0.0011 28.4 2.6 29 179-207 57-87 (154)
73 COG5028 Vesicle coat complex C 28.2 1.3E+02 0.0028 32.7 5.9 70 12-96 267-336 (861)
74 PF05762 VWA_CoxE: VWA domain 27.8 4.3E+02 0.0093 23.3 10.1 86 22-128 56-143 (222)
75 PRK00092 ribosome maturation p 26.6 59 0.0013 27.5 2.7 31 178-208 52-84 (154)
76 smart00187 INB Integrin beta s 25.7 7.1E+02 0.015 25.2 17.4 181 15-219 91-312 (423)
77 PF13778 DUF4174: Domain of un 24.5 3.8E+02 0.0082 21.6 8.2 53 23-89 41-94 (118)
78 PTZ00395 Sec24-related protein 24.2 1.1E+02 0.0023 35.5 4.6 53 23-88 952-1004(1560)
79 PRK03369 murD UDP-N-acetylmura 24.1 4.5E+02 0.0097 26.1 8.7 81 54-151 303-389 (488)
80 PRK14638 hypothetical protein; 23.4 74 0.0016 27.2 2.7 30 178-207 54-85 (150)
81 KOG2327 DNA-binding subunit of 21.8 1.4E+02 0.0031 31.3 4.8 49 22-74 17-65 (602)
82 PRK14641 hypothetical protein; 21.3 81 0.0018 27.8 2.6 46 178-223 54-107 (173)
83 PRK14647 hypothetical protein; 21.3 89 0.0019 26.8 2.8 45 178-222 53-101 (159)
84 KOG1575 Voltage-gated shaker-l 21.0 1.5E+02 0.0033 28.8 4.6 29 163-192 128-156 (336)
85 PRK14640 hypothetical protein; 20.9 90 0.002 26.6 2.7 45 178-222 51-99 (152)
86 PRK14636 hypothetical protein; 20.7 90 0.0019 27.5 2.7 32 178-209 52-85 (176)
87 PRK14637 hypothetical protein; 20.3 88 0.0019 26.8 2.5 31 178-208 53-84 (151)
88 KOG0245 Kinesin-like protein [ 20.1 1.5E+02 0.0032 33.4 4.7 58 156-216 43-107 (1221)
No 1
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=98.54 E-value=1.6e-06 Score=76.39 Aligned_cols=168 Identities=18% Similarity=0.294 Sum_probs=121.6
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeeecccCCCHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLRKEFSSDIESTLT 101 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~~~FTsd~~~i~~ 101 (259)
-|=++||||+|.-|..+ .-..|||+..|+++..|+..|..-+|.-+.||+++++ .+.+++ +.|+|...+..
T Consensus 3 ~ea~vi~lD~S~sM~a~-------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~-plT~D~~~~~~ 74 (187)
T cd01452 3 LEATMICIDNSEYMRNG-------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLV-TLTNDQGKILS 74 (187)
T ss_pred ceEEEEEEECCHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEE-CCCCCHHHHHH
Confidence 48899999999987631 1344899999999999999999999999999999998 899998 99999999999
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecC-CCCcc-cc-C--CCCCCceEEEEEeecCCCCCC
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRS-SVRPQ-HQ-W--PVNQKLFTMDVLYLHDKPGPD 176 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS-~~~P~-~~-~--~~~~p~FflDVvYlHd~~~~d 176 (259)
+|+.++.. +..||..=.+++....+......-.-|+|+++|=. .+=|. .. . .+++..-.+||+=+=+. .+
T Consensus 75 ~L~~i~~~---g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~--~~ 149 (187)
T cd01452 75 KLHDVQPK---GKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI--DD 149 (187)
T ss_pred HHHhCCCC---CcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC--CC
Confidence 99988854 56677776665554444333323345878888766 33222 11 1 13455777899988544 44
Q ss_pred CChHHHHHHHHHhhhhcCCCceeEEEcCcch
Q 025034 177 NCPQKVYDALVDALEHVSENEGYIFESGQGL 207 (259)
Q Consensus 177 nc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~ 207 (259)
|- +.-..|+++... +..|-+.++-.|.
T Consensus 150 ~~--~~l~~~~~~~~~--~~~s~~~~~~~~~ 176 (187)
T cd01452 150 NT--EKLTAFIDAVNG--KDGSHLVSVPPGE 176 (187)
T ss_pred CH--HHHHHHHHHhcC--CCCceEEEeCCCC
Confidence 43 446677777753 4568888877555
No 2
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.28 E-value=1.9e-05 Score=68.09 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=90.2
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEe-cccceeeecccCCCHHHHHHHh
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTL-AKTASWLRKEFSSDIESTLTAV 103 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L-~dsasWl~~~FTsd~~~i~~aL 103 (259)
+|+|+||+|.-|.. + | -..+||+..|++++.|++.+..-+|.-+++|+++ +.++.-++ ++|+|.+.+...|
T Consensus 5 ~ivi~lD~S~SM~a----~--D-~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~-PlT~D~~~~~~~L 76 (183)
T cd01453 5 HLIIVIDCSRSMEE----Q--D-LKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLT-DLTGNPRKHIQAL 76 (183)
T ss_pred EEEEEEECcHHHhc----C--C-CCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEE-CCCCCHHHHHHHh
Confidence 69999999998773 1 1 2358999999999999999888889999999999 57788887 9999999999998
Q ss_pred hccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeec-CCCCcc-c-cC--CCCCCceEEEEEeec
Q 025034 104 RGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCR-SSVRPQ-H-QW--PVNQKLFTMDVLYLH 170 (259)
Q Consensus 104 ~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~R-S~~~P~-~-~~--~~~~p~FflDVvYlH 170 (259)
+.+. ...+..+|..-.+.+....+..... .--|+|++.+= +.+-|. . .+ .+++..-.+++|=+.
T Consensus 77 ~~~~--~~~G~t~l~~aL~~A~~~l~~~~~~-~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG 145 (183)
T cd01453 77 KTAR--ECSGEPSLQNGLEMALESLKHMPSH-GSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLS 145 (183)
T ss_pred hccc--CCCCchhHHHHHHHHHHHHhcCCcc-CceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEec
Confidence 8761 1223345655555554444322111 12456777652 122221 1 11 133345567777775
No 3
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=98.14 E-value=4.8e-05 Score=66.56 Aligned_cols=155 Identities=16% Similarity=0.231 Sum_probs=95.9
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc----------eeeeccc-
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA----------SWLRKEF- 92 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa----------sWl~~~F- 92 (259)
|-||||||+|+.|.. ..+|...+||+.+++++..|++.|....|.-+.||+..+.+. .-++ +.
T Consensus 2 e~ivf~iDvS~SM~~-----~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~-~l~ 75 (218)
T cd01458 2 ESVVFLVDVSPSMFE-----SKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLL-DLD 75 (218)
T ss_pred cEEEEEEeCCHHHcC-----CCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEee-cCC
Confidence 789999999998872 224445699999999999999999999999999999999653 1122 44
Q ss_pred CCCHHHHHHHhhcccccc--------ccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCCcc----c---cC--
Q 025034 93 SSDIESTLTAVRGISATS--------ACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVRPQ----H---QW-- 155 (259)
Q Consensus 93 Tsd~~~i~~aL~~L~~~~--------~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~P~----~---~~-- 155 (259)
+.|.+.+...+..++... .....||...+..+.......... ..-|.|++..=-. -|. . .+
T Consensus 76 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~-~~~k~IvL~TDg~-~p~~~~~~~~~~~~~ 153 (218)
T cd01458 76 TPGAERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKK-KSHKRIFLFTNND-DPHGGDSIKDSQAAV 153 (218)
T ss_pred CCCHHHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhcccc-ccccEEEEECCCC-CCCCCCHHHHHHHHH
Confidence 677765555555444331 346778877777666554432222 2334444443211 121 0 00
Q ss_pred ---CCCCCceEEEEEeecCCCCCCCChHHHHHHHH
Q 025034 156 ---PVNQKLFTMDVLYLHDKPGPDNCPQKVYDALV 187 (259)
Q Consensus 156 ---~~~~p~FflDVvYlHd~~~~dnc~q~Vyd~L~ 187 (259)
-+++....+.++.+-..... --+...|..+.
T Consensus 154 ~a~~l~~~gI~i~~i~i~~~~~~-f~~~~fy~~i~ 187 (218)
T cd01458 154 KAEDLKDKGIELELFPLSSPGKK-FDVSKFYKDII 187 (218)
T ss_pred HHHHHHhCCcEEEEEecCCCCCC-CChhHHHHHHh
Confidence 02333566677777443331 23667777664
No 4
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.94 E-value=0.00017 Score=57.85 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=99.1
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHHhh
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVR 104 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~aL~ 104 (259)
+||||||.|.-|... +...++++.+|.++..++.. . |..+|+|+..+++..++. +||+|.+.+.+.|.
T Consensus 1 dvv~v~D~SgSM~~~-------~~~~~~~~~~~~~~~~~~~~-~---~~~~v~l~~f~~~~~~~~-~~t~~~~~~~~~l~ 68 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGY-------DGNRTRIDQAKDALNELLAN-L---PGDRVGLVSFSDSSRTLS-PLTSDKDELKNALN 68 (172)
T ss_dssp EEEEEEE-SGGGGTT-------TSSS-HHHHHHHHHHHHHHH-H---TTSEEEEEEESTSCEEEE-EEESSHHHHHHHHH
T ss_pred CEEEEEECCcccCCC-------CCCCcHHHHHHHHHHHHHHH-C---CCCEEEEEEecccccccc-cccccHHHHHHHhh
Confidence 699999999988732 23478999999999999986 2 566999999999998888 99999999999999
Q ss_pred cccccc-ccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCCccc---cC--CCCCCceEEEEEeecCCCCCCCC
Q 025034 105 GISATS-ACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVRPQH---QW--PVNQKLFTMDVLYLHDKPGPDNC 178 (259)
Q Consensus 105 ~L~~~~-~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~P~~---~~--~~~~p~FflDVvYlHd~~~~dnc 178 (259)
.+.... ....-++..-+..+..... ..+..-|.|++.+-- .|.- +. ..++....+.+|.+......
T Consensus 69 ~~~~~~~~~~~t~~~~al~~a~~~~~---~~~~~~~~iv~iTDG--~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~--- 140 (172)
T PF13519_consen 69 KLSPQGMPGGGTNLYDALQEAAKMLA---SSDNRRRAIVLITDG--EDNSSDIEAAKALKQQGITIYTVGIGSDSDA--- 140 (172)
T ss_dssp THHHHG--SSS--HHHHHHHHHHHHH---C-SSEEEEEEEEES---TTHCHHHHHHHHHHCTTEEEEEEEES-TT-E---
T ss_pred cccccccCccCCcHHHHHHHHHHHHH---hCCCCceEEEEecCC--CCCcchhHHHHHHHHcCCeEEEEEECCCccH---
Confidence 999642 2233344433333333222 222455666666543 2221 00 13455677888887766554
Q ss_pred hHHHHHHHHHhhhhcCCCceeEEEcC---cchHHHHHHH
Q 025034 179 PQKVYDALVDALEHVSENEGYIFESG---QGLARILFRQ 214 (259)
Q Consensus 179 ~q~Vyd~L~~~ld~~s~~~sYi~Evg---~~~a~~L~~~ 214 (259)
++.+..|... ..|-+|++. ..+ ..+|+.
T Consensus 141 -~~~l~~la~~------tgG~~~~~~~~~~~l-~~~~~~ 171 (172)
T PF13519_consen 141 -NEFLQRLAEA------TGGRYFHVDNDPEDL-DDAFQQ 171 (172)
T ss_dssp -HHHHHHHHHH------TEEEEEEE-SSSHHH-HHHHHH
T ss_pred -HHHHHHHHHh------cCCEEEEecCCHHHH-HHHHhc
Confidence 3444444331 235555552 333 455554
No 5
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=97.74 E-value=0.00075 Score=54.40 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=98.4
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeeccc--CCCHHHHHH
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEF--SSDIESTLT 101 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~F--Tsd~~~i~~ 101 (259)
=+|+||||+|..|. -.+++.+|.++..|++.-...++..++++++.++...... ++ +++.+.+.+
T Consensus 2 ~~v~l~vD~S~SM~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~-~~~~~~~~~~~~~ 68 (177)
T smart00327 2 LDVVFLLDGSGSMG------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLF-PLNDSRSKDALLE 68 (177)
T ss_pred ccEEEEEeCCCccc------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEE-cccccCCHHHHHH
Confidence 37999999999875 1579999999999999888777899999999999877776 78 899999999
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhhcCC--CceEEEEEEee--cCCCCccc-cC--CCCCCceEEEEEeecCCCC
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKSRAQ--NRILRVILIYC--RSSVRPQH-QW--PVNQKLFTMDVLYLHDKPG 174 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~--~~vvRVILiY~--RS~~~P~~-~~--~~~~p~FflDVvYlHd~~~ 174 (259)
.++.+... ..+.-++..-++.+...++..... ...-++|+|.+ .++..... .. ..+.....+..+.+.+...
T Consensus 69 ~i~~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~~~i~i~~i~~~~~~~ 147 (177)
T smart00327 69 ALASLSYK-LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKRSGVKVFVVGVGNDVD 147 (177)
T ss_pred HHHhcCCC-CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEccCccC
Confidence 99998852 223445666555555554322111 12245666663 22211011 00 0223346677777764331
Q ss_pred CCCChHHHHHHHHHhhhhcCCCceeEE
Q 025034 175 PDNCPQKVYDALVDALEHVSENEGYIF 201 (259)
Q Consensus 175 ~dnc~q~Vyd~L~~~ld~~s~~~sYi~ 201 (259)
++.+ ..+.+- .+..|.|
T Consensus 148 --------~~~l-~~~~~~-~~~~~~~ 164 (177)
T smart00327 148 --------EEEL-KKLASA-PGGVYVF 164 (177)
T ss_pred --------HHHH-HHHhCC-CcceEEe
Confidence 4444 234442 2445666
No 6
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=97.67 E-value=0.0013 Score=51.02 Aligned_cols=107 Identities=24% Similarity=0.352 Sum_probs=79.4
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCC--CHHHHHH
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSS--DIESTLT 101 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTs--d~~~i~~ 101 (259)
.+|+|+||.|.-|. ..+++.+|+++..++..-...++..+++++..++....+. +++. +.+.+..
T Consensus 1 ~~v~~viD~S~Sm~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~-~~~~~~~~~~~~~ 67 (161)
T cd00198 1 ADIVFLLDVSGSMG------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVL-PLTTDTDKADLLE 67 (161)
T ss_pred CcEEEEEeCCCCcC------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceee-cccccCCHHHHHH
Confidence 37999999999762 2678999999999999888877899999999998776666 7776 8899999
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEee
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYC 145 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~ 145 (259)
.+..+.. .....-|+...++.+........ .+...|+|++++
T Consensus 68 ~~~~~~~-~~~~~t~~~~al~~~~~~~~~~~-~~~~~~~lvvit 109 (161)
T cd00198 68 AIDALKK-GLGGGTNIGAALRLALELLKSAK-RPNARRVIILLT 109 (161)
T ss_pred HHHhccc-CCCCCccHHHHHHHHHHHhcccC-CCCCceEEEEEe
Confidence 9998875 34466677777777765543322 233445444444
No 7
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.66 E-value=0.00094 Score=55.51 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=83.1
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHHhh
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVR 104 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~aL~ 104 (259)
+|+||||+|.-|...- . + ..++++..|+++..|+.. .+..+++++++++.+.++. +++.|...+...|.
T Consensus 4 ~vv~vlD~S~SM~~~~-~----~-~~~r~~~a~~~~~~~~~~----~~~~~v~lv~f~~~~~~~~-~~~~~~~~~~~~l~ 72 (180)
T cd01467 4 DIMIALDVSGSMLAQD-F----V-KPSRLEAAKEVLSDFIDR----RENDRIGLVVFAGAAFTQA-PLTLDRESLKELLE 72 (180)
T ss_pred eEEEEEECCccccccc-C----C-CCCHHHHHHHHHHHHHHh----CCCCeEEEEEEcCCeeecc-CCCccHHHHHHHHH
Confidence 6899999999887321 1 1 347999999999999864 3678999999999988887 99999998888888
Q ss_pred ccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe--ecCCCCccc--c--CCCCCCceEEEEEeecC
Q 025034 105 GISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIY--CRSSVRPQH--Q--WPVNQKLFTMDVLYLHD 171 (259)
Q Consensus 105 ~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY--~RS~~~P~~--~--~~~~~p~FflDVvYlHd 171 (259)
.|........-++..=+..+........ ..-++|+|. |.++.-+.. . ...++....+.+|=+-.
T Consensus 73 ~l~~~~~~g~T~l~~al~~a~~~l~~~~---~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 73 DIKIGLAGQGTAIGDAIGLAIKRLKNSE---AKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred HhhhcccCCCCcHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 8873222223344433333333222111 112566666 555533221 1 11233445566665554
No 8
>PRK13685 hypothetical protein; Provisional
Probab=97.64 E-value=0.00021 Score=66.75 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=65.4
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
+-+||||||+|.-|..+ + -..+||+..|+++..|+.. +.++.+++|++.++++.++. ++|+|.+.+..+
T Consensus 88 ~~~vvlvlD~S~SM~~~------D-~~p~RL~~ak~~~~~~l~~---l~~~d~vglv~Fa~~a~~~~-p~t~d~~~l~~~ 156 (326)
T PRK13685 88 RAVVMLVIDVSQSMRAT------D-VEPNRLAAAQEAAKQFADE---LTPGINLGLIAFAGTATVLV-SPTTNREATKNA 156 (326)
T ss_pred CceEEEEEECCccccCC------C-CCCCHHHHHHHHHHHHHHh---CCCCCeEEEEEEcCceeecC-CCCCCHHHHHHH
Confidence 44799999999988731 1 2348999999999999973 56788999999999999998 999999999999
Q ss_pred hhccccc
Q 025034 103 VRGISAT 109 (259)
Q Consensus 103 L~~L~~~ 109 (259)
|+.|...
T Consensus 157 l~~l~~~ 163 (326)
T PRK13685 157 IDKLQLA 163 (326)
T ss_pred HHhCCCC
Confidence 9999864
No 9
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.61 E-value=0.00095 Score=55.36 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=71.3
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCC----CHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSS----DIESTL 100 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTs----d~~~i~ 100 (259)
+|+|+||.|.-|.. +||+.+|+|+..+++ .+.++-+++|+++++.+.|+. +++. +.+.+.
T Consensus 2 ~v~~vlD~S~SM~~------------~rl~~ak~a~~~l~~---~l~~~~~~~li~F~~~~~~~~-~~~~~~~~~~~~~~ 65 (155)
T cd01466 2 DLVAVLDVSGSMAG------------DKLQLVKHALRFVIS---SLGDADRLSIVTFSTSAKRLS-PLRRMTAKGKRSAK 65 (155)
T ss_pred cEEEEEECCCCCCc------------HHHHHHHHHHHHHHH---hCCCcceEEEEEecCCccccC-CCcccCHHHHHHHH
Confidence 58999999997752 289999999997776 455667899999999999997 8874 446788
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe-ecCCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIY-CRSSV 149 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY-~RS~~ 149 (259)
+.|..+.+.+ .-++..=++.+.+..+.....+..-++|||= |.++.
T Consensus 66 ~~i~~~~~~g---~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~ 112 (155)
T cd01466 66 RVVDGLQAGG---GTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH 112 (155)
T ss_pred HHHHhccCCC---CccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc
Confidence 8888876533 2244444444444433332233444566654 45443
No 10
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0039 Score=57.15 Aligned_cols=175 Identities=21% Similarity=0.314 Sum_probs=127.4
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeeecccCCCHHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLRKEFSSDIESTL 100 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~~~FTsd~~~i~ 100 (259)
.+|-+++|||=|+-|.. | .=.-|||..=|.||.+-..+|..=||..--+|+++.+ ++.-|. -+|+|.--|+
T Consensus 2 vlEatmi~iDNse~mrN-----g--Dy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLs-T~T~d~gkil 73 (259)
T KOG2884|consen 2 VLEATMICIDNSEYMRN-----G--DYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLS-TLTSDRGKIL 73 (259)
T ss_pred CcceEEEEEeChHHhhc-----C--CCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeee-eccccchHHH
Confidence 57999999999986552 1 1345899999999999999999999999999999998 899998 9999999999
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCCccc-----cCCCCCCceEEEEEeecCCCCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVRPQH-----QWPVNQKLFTMDVLYLHDKPGP 175 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~P~~-----~~~~~~p~FflDVvYlHd~~~~ 175 (259)
++|.++..-+ .+|+..=.+.++.-.+..+..+.--|+|++-|-+-.=-.- -..++.-.-.+|+|..-+-.+
T Consensus 74 s~lh~i~~~g---~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~- 149 (259)
T KOG2884|consen 74 SKLHGIQPHG---KANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAEN- 149 (259)
T ss_pred HHhcCCCcCC---cccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccc-
Confidence 9999998665 4566554444433445556667778988888754311110 011455667899998765433
Q ss_pred CCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHHH
Q 025034 176 DNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFRQ 214 (259)
Q Consensus 176 dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~~ 214 (259)
| .+. .+.|.++++. +...|-+.+|..|+ .|...
T Consensus 150 -~-~e~-l~~fida~N~-~~~gshlv~Vppg~--~L~d~ 182 (259)
T KOG2884|consen 150 -N-TEK-LFEFIDALNG-KGDGSHLVSVPPGP--LLSDA 182 (259)
T ss_pred -c-HHH-HHHHHHHhcC-CCCCceEEEeCCCc--cHHHH
Confidence 2 444 4455588886 24557788999888 36553
No 11
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.59 E-value=0.0013 Score=54.42 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=74.3
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCC-CccEEEEEecccceeeecccC--CCHHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINP-DHRFAFVTLAKTASWLRKEFS--SDIESTLT 101 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p-~HeFAl~~L~dsasWl~~~FT--sd~~~i~~ 101 (259)
+|+|+||.|.-|.. .+++.+|+++..++.. +.+.+ +-++++++.++++.|.. +|+ .|.+.+..
T Consensus 2 Dvv~vlD~SgSm~~------------~~~~~~k~~~~~~~~~-l~~~~~~~~~giv~Fs~~~~~~~-~~~~~~~~~~~~~ 67 (164)
T cd01472 2 DIVFLVDGSESIGL------------SNFNLVKDFVKRVVER-LDIGPDGVRVGVVQYSDDPRTEF-YLNTYRSKDDVLE 67 (164)
T ss_pred CEEEEEeCCCCCCH------------HHHHHHHHHHHHHHhh-cccCCCCeEEEEEEEcCceeEEE-ecCCCCCHHHHHH
Confidence 79999999997762 3578888888888864 44443 45999999999999998 999 89999999
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY 144 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY 144 (259)
+|+.+...+ +.-++..=+..+.+..... ...+..-|+|++.
T Consensus 68 ~l~~l~~~~--g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iili 110 (164)
T cd01472 68 AVKNLRYIG--GGTNTGKALKYVRENLFTEASGSREGVPKVLVVI 110 (164)
T ss_pred HHHhCcCCC--CCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEE
Confidence 999888542 2236666666665544321 1223345666665
No 12
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=97.58 E-value=0.00062 Score=60.56 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=86.5
Q ss_pred EEeCChhhhh-hhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc-ceeeecccCCCHHHHHHHhhcc
Q 025034 29 CVDVDAESLV-EMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT-ASWLRKEFSSDIESTLTAVRGI 106 (259)
Q Consensus 29 CiD~~~E~~~-~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds-asWl~~~FTsd~~~i~~aL~~L 106 (259)
+||.|+-|.. -+ .-|||.++.++++.||+....-||--+-+++++.|. +.-+. ++++++++.+++|+.+
T Consensus 1 viD~S~~m~~~D~--------~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls-~lsgn~~~h~~~L~~~ 71 (193)
T PF04056_consen 1 VIDMSEAMREKDL--------KPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLS-ELSGNPQEHIEALKKL 71 (193)
T ss_pred CeechHhHHhCcC--------CccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEee-ecCCCHHHHHHHHHHh
Confidence 4899998873 22 349999999999999999999999999999999996 77776 9999999999999999
Q ss_pred ccccccCCCChhHHHHHHHHHhhhhcCCCce-EEEEEEeecCC
Q 025034 107 SATSACGQADLTHLFKLASHEAKKSRAQNRI-LRVILIYCRSS 148 (259)
Q Consensus 107 ~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~v-vRVILiY~RS~ 148 (259)
...+..+.+.|..=++++....+. .|+|. =+|++|||--+
T Consensus 72 ~~~~~~G~~SLqN~Le~A~~~L~~--~p~~~srEIlvi~gSl~ 112 (193)
T PF04056_consen 72 RKLEPSGEPSLQNGLEMARSSLKH--MPSHGSREILVIFGSLT 112 (193)
T ss_pred ccCCCCCChhHHHHHHHHHHHHhh--CccccceEEEEEEeecc
Confidence 866666888888877777655432 23343 36677786543
No 13
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.57 E-value=0.0017 Score=56.13 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred CCCccccCCCCC---CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccce
Q 025034 10 GAGRFTLPPMRI---SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTAS 86 (259)
Q Consensus 10 ~~~~~~l~p~~~---~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsas 86 (259)
|+|.|++.+.-. .|-+|+|+||+|.-|.. .++...+||+.+|+++..|+.. +.++.+++|+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vv~vlD~SgSM~~------~~~~~~~rl~~ak~a~~~~l~~---l~~~~~v~lv~F~~~~~ 74 (206)
T cd01456 4 GSPAFALEPVETEPQLPPNVAIVLDNSGSMRE------VDGGGETRLDNAKAALDETANA---LPDGTRLGLWTFSGDGD 74 (206)
T ss_pred CcccccccccccccCCCCcEEEEEeCCCCCcC------CCCCcchHHHHHHHHHHHHHHh---CCCCceEEEEEecCCCC
Confidence 445555554322 47889999999998762 1223458999999999999984 67889999999998543
Q ss_pred eee---------------cccC-CCHHHHHHHhhccc
Q 025034 87 WLR---------------KEFS-SDIESTLTAVRGIS 107 (259)
Q Consensus 87 Wl~---------------~~FT-sd~~~i~~aL~~L~ 107 (259)
+.. .++. .+.+.+..+|..+.
T Consensus 75 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~i~~i~ 111 (206)
T cd01456 75 NPLDVRVLVPKGCLTAPVNGFPSAQRSALDAALNSLQ 111 (206)
T ss_pred CCccccccccccccccccCCCCcccHHHHHHHHHhhc
Confidence 211 0222 47788888998887
No 14
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=97.39 E-value=0.0044 Score=50.66 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=64.0
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccC--CCHHHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFS--SDIESTLTA 102 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FT--sd~~~i~~a 102 (259)
+++||||+|.-|.. .+++..|+|+..++. .+++..++++++.++.+.++. +++ .|.+.+...
T Consensus 2 ~~~~vlD~S~SM~~------------~~~~~~k~a~~~~~~---~l~~~~~v~li~f~~~~~~~~-~~~~~~~~~~l~~~ 65 (170)
T cd01465 2 NLVFVIDRSGSMDG------------PKLPLVKSALKLLVD---QLRPDDRLAIVTYDGAAETVL-PATPVRDKAAILAA 65 (170)
T ss_pred cEEEEEECCCCCCC------------hhHHHHHHHHHHHHH---hCCCCCEEEEEEecCCccEEe-cCcccchHHHHHHH
Confidence 58999999997751 248999999999887 667788999999999999987 776 477888888
Q ss_pred hhccccccccCCCChhHHHHHHHHHhh
Q 025034 103 VRGISATSACGQADLTHLFKLASHEAK 129 (259)
Q Consensus 103 L~~L~~~~~~~~~DL~~LF~~i~~e~~ 129 (259)
|..+...+ .-++..-++.+...++
T Consensus 66 l~~~~~~g---~T~~~~al~~a~~~~~ 89 (170)
T cd01465 66 IDRLTAGG---STAGGAGIQLGYQEAQ 89 (170)
T ss_pred HHcCCCCC---CCCHHHHHHHHHHHHH
Confidence 88887533 2245554444444443
No 15
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.31 E-value=0.0048 Score=52.63 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=57.0
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhh-----cC-CCCccEEEEEecccceeeecccC--
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKL-----SI-NPDHRFAFVTLAKTASWLRKEFS-- 93 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~-----~i-~p~HeFAl~~L~dsasWl~~~FT-- 93 (259)
||-+|+|+||.|.-|.. .+++..|++++.+++.=. .+ ...-++|+++.++.+.+.. +|+
T Consensus 1 c~~dvv~vlD~S~Sm~~------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~-~l~~~ 67 (186)
T cd01480 1 GPVDITFVLDSSESVGL------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEA-GFLRD 67 (186)
T ss_pred CCeeEEEEEeCCCccch------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeE-ecccc
Confidence 88999999999997762 235666666666665321 23 3347999999999999998 888
Q ss_pred -CCHHHHHHHhhcccc
Q 025034 94 -SDIESTLTAVRGISA 108 (259)
Q Consensus 94 -sd~~~i~~aL~~L~~ 108 (259)
+|.+.+.++|+.+..
T Consensus 68 ~~~~~~l~~~i~~l~~ 83 (186)
T cd01480 68 IRNYTSLKEAVDNLEY 83 (186)
T ss_pred cCCHHHHHHHHHhCcc
Confidence 789999999998874
No 16
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=97.28 E-value=0.0041 Score=56.57 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=61.3
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
|=.|+||||+|.-|. ..+...|+++..|++.. +.++-++||+++++++.|+. +||+|.+.+..+
T Consensus 53 p~~vvlvlD~SgSM~-------------~~~~~a~~a~~~~l~~~--l~~~d~v~lv~f~~~~~~~~-~~t~~~~~l~~~ 116 (296)
T TIGR03436 53 PLTVGLVIDTSGSMR-------------NDLDRARAAAIRFLKTV--LRPNDRVFVVTFNTRLRLLQ-DFTSDPRLLEAA 116 (296)
T ss_pred CceEEEEEECCCCch-------------HHHHHHHHHHHHHHHhh--CCCCCEEEEEEeCCceeEee-cCCCCHHHHHHH
Confidence 557999999999775 23778899999999753 46889999999999999998 999999999999
Q ss_pred hhcccc
Q 025034 103 VRGISA 108 (259)
Q Consensus 103 L~~L~~ 108 (259)
|..|..
T Consensus 117 l~~l~~ 122 (296)
T TIGR03436 117 LNRLKP 122 (296)
T ss_pred HHhccC
Confidence 999986
No 17
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.23 E-value=0.0029 Score=58.68 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=78.2
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
.=.|+||||.|.-|.... ...++|+ .|..|..|+. ++.. =++|++.+++++..++ +||.|..+ .+.
T Consensus 60 ~~qIvlaID~S~SM~~~~-------~~~~ale-ak~lIs~al~-~Le~---g~vgVv~Fg~~~~~v~-Plt~d~~~-~a~ 125 (266)
T cd01460 60 DYQILIAIDDSKSMSENN-------SKKLALE-SLCLVSKALT-LLEV---GQLGVCSFGEDVQILH-PFDEQFSS-QSG 125 (266)
T ss_pred CceEEEEEecchhccccc-------ccccHHH-HHHHHHHHHH-hCcC---CcEEEEEeCCCceEeC-CCCCCchh-hHH
Confidence 457999999999888533 3446677 7778888876 2233 4999999999999998 99999998 777
Q ss_pred hhcccc-ccccCCCChhHHHHHHHHHhhhhcCCCc---eEEEEEEeecCC
Q 025034 103 VRGISA-TSACGQADLTHLFKLASHEAKKSRAQNR---ILRVILIYCRSS 148 (259)
Q Consensus 103 L~~L~~-~~~~~~~DL~~LF~~i~~e~~~~~~~~~---vvRVILiY~RS~ 148 (259)
++-++. +...+.-|+..+.+.+....+....++. .-|+|+|-+=--
T Consensus 126 ~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~ 175 (266)
T cd01460 126 PRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGR 175 (266)
T ss_pred HHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCC
Confidence 777765 3344555888888877665433311111 346766664443
No 18
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.22 E-value=0.0038 Score=53.03 Aligned_cols=90 Identities=19% Similarity=0.317 Sum_probs=59.7
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
+-+|+|+||.|.-|...+ ..+++.+|+.+..|. +++.++++++.++.+.|+. +||++.+.+..+
T Consensus 4 ~~Dvv~llD~SgSm~~~~---------~~~~~~~~~l~~~~~------~~~~rvglv~Fs~~~~~~~-~l~~~~~~~~~~ 67 (185)
T cd01474 4 HFDLYFVLDKSGSVAANW---------IEIYDFVEQLVDRFN------SPGLRFSFITFSTRATKIL-PLTDDSSAIIKG 67 (185)
T ss_pred ceeEEEEEeCcCchhhhH---------HHHHHHHHHHHHHcC------CCCcEEEEEEecCCceEEE-eccccHHHHHHH
Confidence 458999999999887422 123566666666663 4779999999999999998 999998877777
Q ss_pred hhccccccccCCCChhHHHHHHHHHh
Q 025034 103 VRGISATSACGQADLTHLFKLASHEA 128 (259)
Q Consensus 103 L~~L~~~~~~~~~DL~~LF~~i~~e~ 128 (259)
|..|..-...+.=++..=++.+.+..
T Consensus 68 l~~l~~~~~~g~T~~~~aL~~a~~~l 93 (185)
T cd01474 68 LEVLKKVTPSGQTYIHEGLENANEQI 93 (185)
T ss_pred HHHHhccCCCCCCcHHHHHHHHHHHH
Confidence 54443211112334444444444433
No 19
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.14 E-value=0.011 Score=49.87 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=57.8
Q ss_pred EEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc-ceeeecccCCCHHHHHHHhh
Q 025034 26 IIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT-ASWLRKEFSSDIESTLTAVR 104 (259)
Q Consensus 26 IIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds-asWl~~~FTsd~~~i~~aL~ 104 (259)
|+|+||+|.-|.. .++|+..|+++..|+.. ...++.++++++++++ +.|+. ++|.+.+.+...|+
T Consensus 3 v~lvlD~SgSM~~-----------~~rl~~ak~a~~~~~~~--~~~~~d~v~lv~F~~~~~~~~~-~~t~~~~~~~~~l~ 68 (178)
T cd01451 3 VIFVVDASGSMAA-----------RHRMAAAKGAVLSLLRD--AYQRRDKVALIAFRGTEAEVLL-PPTRSVELAKRRLA 68 (178)
T ss_pred EEEEEECCccCCC-----------ccHHHHHHHHHHHHHHH--hhcCCCEEEEEEECCCCceEEe-CCCCCHHHHHHHHH
Confidence 7899999997651 15899999999999864 3347789999999875 77887 99999999999999
Q ss_pred ccccc
Q 025034 105 GISAT 109 (259)
Q Consensus 105 ~L~~~ 109 (259)
.+...
T Consensus 69 ~l~~~ 73 (178)
T cd01451 69 RLPTG 73 (178)
T ss_pred hCCCC
Confidence 88754
No 20
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.12 E-value=0.0064 Score=52.04 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=56.0
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeeccc----CCCHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEF----SSDIESTL 100 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~F----Tsd~~~i~ 100 (259)
+|+||||+|.-|.. .+|+.+|+++..|++.=..-.++-++++++.+.++.++. ++ +.+...+.
T Consensus 2 di~~vlD~SgSM~~------------~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~-~~~~~~~~~~~~~~ 68 (198)
T cd01470 2 NIYIALDASDSIGE------------EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIV-SIRDFNSNDADDVI 68 (198)
T ss_pred cEEEEEECCCCccH------------HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEE-ecccCCCCCHHHHH
Confidence 69999999997752 368999999999998533333467999999999888775 44 45788899
Q ss_pred HHhhcccc
Q 025034 101 TAVRGISA 108 (259)
Q Consensus 101 ~aL~~L~~ 108 (259)
++|..+..
T Consensus 69 ~~l~~~~~ 76 (198)
T cd01470 69 KRLEDFNY 76 (198)
T ss_pred HHHHhCCc
Confidence 99988864
No 21
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=97.12 E-value=0.0098 Score=50.70 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=65.5
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccC--------
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFS-------- 93 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FT-------- 93 (259)
+|=+|+||||+|.-|.. .+|+..|+++..++. .+.++-+|+|+++++++.++. +.+
T Consensus 12 ~p~~vv~llD~SgSM~~------------~~l~~ak~~~~~ll~---~l~~~d~v~lv~F~~~~~~~~-~~~~~~~~~~~ 75 (190)
T cd01463 12 SPKDIVILLDVSGSMTG------------QRLHLAKQTVSSILD---TLSDNDFFNIITFSNEVNPVV-PCFNDTLVQAT 75 (190)
T ss_pred CCceEEEEEECCCCCCc------------HHHHHHHHHHHHHHH---hCCCCCEEEEEEeCCCeeEEe-eecccceEecC
Confidence 68999999999997751 479999999999986 456667999999999988875 432
Q ss_pred -CCHHHHHHHhhccccccccCCCChhHHHHHHHHH
Q 025034 94 -SDIESTLTAVRGISATSACGQADLTHLFKLASHE 127 (259)
Q Consensus 94 -sd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e 127 (259)
.+.+.+..+|..|.+.+ .-++..-++.+.+.
T Consensus 76 ~~~~~~~~~~l~~l~~~G---~T~~~~al~~a~~~ 107 (190)
T cd01463 76 TSNKKVLKEALDMLEAKG---IANYTKALEFAFSL 107 (190)
T ss_pred HHHHHHHHHHHhhCCCCC---cchHHHHHHHHHHH
Confidence 45678888888887644 33455555545443
No 22
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.10 E-value=0.0047 Score=50.47 Aligned_cols=85 Identities=21% Similarity=0.326 Sum_probs=57.6
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeeccc-CCCHHHHHHHh
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEF-SSDIESTLTAV 103 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~F-Tsd~~~i~~aL 103 (259)
+|||.||+|.-|.. . . +.+|+|+..++++ +.+..+|.++..++++.|+...+ ..+.+.+-.++
T Consensus 2 ~vvilvD~S~Sm~g---------~---~-~~~k~al~~~l~~---L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~ 65 (155)
T PF13768_consen 2 DVVILVDTSGSMSG---------E---K-ELVKDALRAILRS---LPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEAL 65 (155)
T ss_pred eEEEEEeCCCCCCC---------c---H-HHHHHHHHHHHHh---CCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHH
Confidence 69999999997662 1 2 8999999999985 88999999999999988776332 23333343444
Q ss_pred hccccccc-cCCCChhHHHHHHH
Q 025034 104 RGISATSA-CGQADLTHLFKLAS 125 (259)
Q Consensus 104 ~~L~~~~~-~~~~DL~~LF~~i~ 125 (259)
+.+..-.. .+.-|+..-.+.+.
T Consensus 66 ~~I~~~~~~~G~t~l~~aL~~a~ 88 (155)
T PF13768_consen 66 QWIKSLEANSGGTDLLAALRAAL 88 (155)
T ss_pred HHHHHhcccCCCccHHHHHHHHH
Confidence 44443222 45567666555443
No 23
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.06 E-value=0.0071 Score=61.65 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=76.9
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeeecccCCCHHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLRKEFSSDIESTL 100 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~~~FTsd~~~i~ 100 (259)
.+-.||||||+|.-|. . +||...|+|+..|+.. ...++-+.+|++++. .+.|+. ++|++.+.+.
T Consensus 400 ~~~~vvfvvD~SGSM~----~--------~rl~~aK~a~~~ll~~--ay~~rD~v~lI~F~g~~a~~~l-ppT~~~~~~~ 464 (584)
T PRK13406 400 SETTTIFVVDASGSAA----L--------HRLAEAKGAVELLLAE--AYVRRDQVALVAFRGRGAELLL-PPTRSLVRAK 464 (584)
T ss_pred CCccEEEEEECCCCCc----H--------hHHHHHHHHHHHHHHh--hcCCCCEEEEEEECCCceeEEc-CCCcCHHHHH
Confidence 4678999999999653 1 5899999999999854 456788999999975 599998 9999999999
Q ss_pred HHhhccccccccCCCChhHHHHHH---HHHhhhhcCCCceEEEEEE-eecCCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLA---SHEAKKSRAQNRILRVILI-YCRSSV 149 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i---~~e~~~~~~~~~vvRVILi-Y~RS~~ 149 (259)
..|..|...+ -|.|+.-+ ++.++.....+..-++||| =||.|.
T Consensus 465 ~~L~~l~~gG------gTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~ 511 (584)
T PRK13406 465 RSLAGLPGGG------GTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANI 511 (584)
T ss_pred HHHhcCCCCC------CChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCC
Confidence 9999887543 34444444 3333333323334455544 467663
No 24
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.02 E-value=0.016 Score=47.12 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=73.8
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhh-cCCCCccEEEEEecccceeeecccCCC--HHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKL-SINPDHRFAFVTLAKTASWLRKEFSSD--IESTLT 101 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~-~i~p~HeFAl~~L~dsasWl~~~FTsd--~~~i~~ 101 (259)
+|+|.||.|.-|.. ..++.+|+++..|+. ++ .-++.-++++++.++++.++. +|++. .+++.+
T Consensus 1 DivflvD~S~sm~~------------~~~~~~~~~v~~~i~-~~~~~~~~~rv~iv~f~~~~~~~~-~~~~~~~~~~~~~ 66 (178)
T PF00092_consen 1 DIVFLVDTSGSMSG------------DNFEKAKQFVKSIIS-RLSISNNGTRVGIVTFSDSARVLF-SLTDYQSKNDLLN 66 (178)
T ss_dssp EEEEEEE-STTSCH------------HHHHHHHHHHHHHHH-HSTBSTTSEEEEEEEESSSEEEEE-ETTSHSSHHHHHH
T ss_pred CEEEEEeCCCCCch------------HHHHHHHHHHHHHHH-hhhccccccccceeeeeccccccc-ccccccccccccc
Confidence 69999999998773 347889999999999 54 677779999999999999988 88774 677888
Q ss_pred Hh-hccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEee
Q 025034 102 AV-RGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIYC 145 (259)
Q Consensus 102 aL-~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY~ 145 (259)
.+ ..+.. ..+.-++..-++.+..+.... ...+..-++|++..
T Consensus 67 ~i~~~~~~--~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliT 111 (178)
T PF00092_consen 67 AINDSIPS--SGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILIT 111 (178)
T ss_dssp HHHTTGGC--CBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEE
T ss_pred cccccccc--cchhhhHHHHHhhhhhcccccccccccccccceEEEE
Confidence 87 44432 335556888888777765433 12234455555443
No 25
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.01 E-value=0.011 Score=51.52 Aligned_cols=137 Identities=13% Similarity=0.239 Sum_probs=75.1
Q ss_pred EEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc-------------ceeeeccc
Q 025034 26 IIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT-------------ASWLRKEF 92 (259)
Q Consensus 26 IIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds-------------asWl~~~F 92 (259)
||||||+++.|..+... +.. .|+.+.+++..++..|..-++.++.|++..|-. +.-++ ++
T Consensus 2 ~vflID~s~sM~~~~~~----~~~--~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~-~l 74 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSE----SES--PLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQ-PL 74 (224)
T ss_dssp EEEEEE-SCGGGS-BTT----CS---HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEE-EC
T ss_pred EEEEEECCHHHCCCCCC----cch--hHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEee-cC
Confidence 79999999999853311 122 999999999999999999999999999999821 12233 44
Q ss_pred CCCHHHHHHHhhccccc--------cccCCCChhHHHHHHHHHhhh-hcCCCceEEEEEEeecCCCCcccc-------CC
Q 025034 93 SSDIESTLTAVRGISAT--------SACGQADLTHLFKLASHEAKK-SRAQNRILRVILIYCRSSVRPQHQ-------WP 156 (259)
Q Consensus 93 Tsd~~~i~~aL~~L~~~--------~~~~~~DL~~LF~~i~~e~~~-~~~~~~vvRVILiY~RS~~~P~~~-------~~ 156 (259)
..---+.+..|..+... ......||...+-.+...... .....+.-|-|++..-...+..-. +.
T Consensus 75 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~~~~~ 154 (224)
T PF03731_consen 75 DPPSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELERIIQK 154 (224)
T ss_dssp C--BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHHHHHH
T ss_pred CccCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHHHHHh
Confidence 43332333333333323 234667887777666665443 133444444455555444332110 01
Q ss_pred -----CCCCceEEEEEee
Q 025034 157 -----VNQKLFTMDVLYL 169 (259)
Q Consensus 157 -----~~~p~FflDVvYl 169 (259)
++.-...+++++|
T Consensus 155 l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 155 LKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp HHHHHHHHHTEEEEEEEC
T ss_pred hccccchhcCcceeEeec
Confidence 2245677888888
No 26
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=96.91 E-value=0.026 Score=44.93 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=58.8
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCC--HHHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSD--IESTLTA 102 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd--~~~i~~a 102 (259)
+|+|+||.|.-|.. ..++.+++++..|+..=..-+++=+++|++.++.+.+.. +|+++ .+.+...
T Consensus 2 di~~llD~S~Sm~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~-~~~~~~~~~~~~~~ 68 (161)
T cd01450 2 DIVFLLDGSESVGP------------ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEF-SLNDYKSKDDLLKA 68 (161)
T ss_pred cEEEEEeCCCCcCH------------HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEE-ECCCCCCHHHHHHH
Confidence 68999999997762 267889999999988655555788999999999888877 88887 8888888
Q ss_pred hhccccc
Q 025034 103 VRGISAT 109 (259)
Q Consensus 103 L~~L~~~ 109 (259)
|..+...
T Consensus 69 i~~~~~~ 75 (161)
T cd01450 69 VKNLKYL 75 (161)
T ss_pred HHhcccC
Confidence 8887643
No 27
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.79 E-value=0.026 Score=46.88 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=68.7
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-CCccEEEEEecccceeeecccC--CCHHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-PDHRFAFVTLAKTASWLRKEFS--SDIESTLT 101 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-p~HeFAl~~L~dsasWl~~~FT--sd~~~i~~ 101 (259)
+|+|+||.|.-|.. ..+..+|+++..++.. +.+. ++.++|+++...++.... +|+ .+.+.+.+
T Consensus 2 Dv~~vlD~S~Sm~~------------~~~~~~k~~~~~l~~~-~~~~~~~~rvgli~fs~~~~~~~-~l~~~~~~~~l~~ 67 (164)
T cd01482 2 DIVFLVDGSWSIGR------------SNFNLVRSFLSSVVEA-FEIGPDGVQVGLVQYSDDPRTEF-DLNAYTSKEDVLA 67 (164)
T ss_pred CEEEEEeCCCCcCh------------hhHHHHHHHHHHHHhh-eeeCCCceEEEEEEECCCeeEEE-ecCCCCCHHHHHH
Confidence 79999999997652 3478889999998885 4454 468999999999887766 665 56788888
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY 144 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY 144 (259)
+|..+...+ +.=++..=++.+.+..... ...+..-|+|+|.
T Consensus 68 ~l~~~~~~~--g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iill 110 (164)
T cd01482 68 AIKNLPYKG--GNTRTGKALTHVREKNFTPDAGARPGVPKVVILI 110 (164)
T ss_pred HHHhCcCCC--CCChHHHHHHHHHHHhcccccCCCCCCCEEEEEE
Confidence 888776322 1224555555444433222 1223345566664
No 28
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=96.59 E-value=0.026 Score=52.60 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=82.2
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEec-ccceeeecccCCCHHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLA-KTASWLRKEFSSDIESTL 100 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~-dsasWl~~~FTsd~~~i~ 100 (259)
...-|||+||.|.-|.. + .||..+|.++..|.+. .-..+-+-|++.++ +.+.|+. +.|++++.+.
T Consensus 77 ~g~lvvfvVDASgSM~~-~----------~Rm~aaKG~~~~lL~d--AYq~RdkvavI~F~G~~A~lll-~pT~sv~~~~ 142 (261)
T COG1240 77 AGNLIVFVVDASGSMAA-R----------RRMAAAKGAALSLLRD--AYQRRDKVAVIAFRGEKAELLL-PPTSSVELAE 142 (261)
T ss_pred cCCcEEEEEeCcccchh-H----------HHHHHHHHHHHHHHHH--HHHccceEEEEEecCCcceEEe-CCcccHHHHH
Confidence 35679999999998773 2 4799999999999885 56678899999999 6899998 9999999999
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHh---hhhcCCCceEEEEEEeecCCCCcc
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEA---KKSRAQNRILRVILIYCRSSVRPQ 152 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~---~~~~~~~~vvRVILiY~RS~~~P~ 152 (259)
..|.+|-..+.. .|..=+...+.-. +...+.-..+=|++-=||.+..+-
T Consensus 143 ~~L~~l~~GG~T---PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~ 194 (261)
T COG1240 143 RALERLPTGGKT---PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIP 194 (261)
T ss_pred HHHHhCCCCCCC---chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCC
Confidence 999999976643 3333333333322 222233445555666788664443
No 29
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=96.57 E-value=0.041 Score=46.34 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=60.6
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCC----CHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSS----DIESTL 100 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTs----d~~~i~ 100 (259)
+|+|+||.|..|.. .++++.+|+++..|+..-..-+.+-++++++.++.+.++. +|+. +.+.+.
T Consensus 2 Dv~~vlD~SgSm~~-----------~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~-~l~~~~~~~~~~~~ 69 (186)
T cd01471 2 DLYLLVDGSGSIGY-----------SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELI-RLSSPNSTNKDLAL 69 (186)
T ss_pred cEEEEEeCCCCccc-----------hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEE-ECCCccccchHHHH
Confidence 69999999997762 1358899999999988643334567999999999998887 7765 345544
Q ss_pred HHhhcccccc-ccCCCChhHHHHHHHHHh
Q 025034 101 TAVRGISATS-ACGQADLTHLFKLASHEA 128 (259)
Q Consensus 101 ~aL~~L~~~~-~~~~~DL~~LF~~i~~e~ 128 (259)
+.++.|.... ..+.-++..=++.+....
T Consensus 70 ~~i~~l~~~~~~~G~T~l~~aL~~a~~~l 98 (186)
T cd01471 70 NAIRALLSLYYPNGSTNTTSALLVVEKHL 98 (186)
T ss_pred HHHHHHHhCcCCCCCccHHHHHHHHHHHh
Confidence 4555443221 123345555555554433
No 30
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.51 E-value=0.018 Score=50.55 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=58.9
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCC-CccEEEEEecccceeeecccC--CCHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINP-DHRFAFVTLAKTASWLRKEFS--SDIEST 99 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p-~HeFAl~~L~dsasWl~~~FT--sd~~~i 99 (259)
|=+|+|+||.|.-|.. ..++.+|+.+..+++. +.+++ ..++|+++.++.+.+.. +|+ .+..++
T Consensus 2 ~~DlvfllD~S~Sm~~------------~~~~~~k~f~~~l~~~-l~~~~~~~rvglv~fs~~~~~~~-~l~~~~~~~~l 67 (224)
T cd01475 2 PTDLVFLIDSSRSVRP------------ENFELVKQFLNQIIDS-LDVGPDATRVGLVQYSSTVKQEF-PLGRFKSKADL 67 (224)
T ss_pred CccEEEEEeCCCCCCH------------HHHHHHHHHHHHHHHh-cccCCCccEEEEEEecCceeEEe-cccccCCHHHH
Confidence 4589999999997652 3588899999999974 66666 46999999999998887 887 467788
Q ss_pred HHHhhccccc
Q 025034 100 LTAVRGISAT 109 (259)
Q Consensus 100 ~~aL~~L~~~ 109 (259)
..+|+.+...
T Consensus 68 ~~~i~~i~~~ 77 (224)
T cd01475 68 KRAVRRMEYL 77 (224)
T ss_pred HHHHHhCcCC
Confidence 8898888653
No 31
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=96.44 E-value=0.045 Score=47.99 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=53.9
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcC--CC----CccEEEEEecccceeeecccCC-
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSI--NP----DHRFAFVTLAKTASWLRKEFSS- 94 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i--~p----~HeFAl~~L~dsasWl~~~FTs- 94 (259)
-+=+|+|+||.|.-|.. .+|+.+|+.|..++..=..+ ++ ..+.||++.++++.|.. +++.
T Consensus 18 ~~~DivfvlD~S~Sm~~------------~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~-~L~d~ 84 (193)
T cd01477 18 LWLDIVFVVDNSKGMTQ------------GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVA-DLNDL 84 (193)
T ss_pred ceeeEEEEEeCCCCcch------------hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEE-ecccc
Confidence 36789999999997751 35888888887776633223 22 37999999999999998 9974
Q ss_pred -CHHHHHHHhhc
Q 025034 95 -DIESTLTAVRG 105 (259)
Q Consensus 95 -d~~~i~~aL~~ 105 (259)
+.+++.++|+.
T Consensus 85 ~~~~~~~~ai~~ 96 (193)
T cd01477 85 QSFDDLYSQIQG 96 (193)
T ss_pred cCHHHHHHHHHH
Confidence 55778888874
No 32
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=96.34 E-value=0.084 Score=44.74 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=69.2
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCC-CccEEEEEecccceeeecccC--CCHHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINP-DHRFAFVTLAKTASWLRKEFS--SDIESTLT 101 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p-~HeFAl~~L~dsasWl~~~FT--sd~~~i~~ 101 (259)
+|+|.||.|.-|.. ..++.+|+.+..||. ++.+++ ..++|+++.++++.-.. +|+ ++..++.+
T Consensus 2 Di~fvlD~S~S~~~------------~~f~~~k~fi~~~i~-~l~~~~~~~rvgvv~fs~~~~~~~-~l~~~~~~~~~~~ 67 (177)
T cd01469 2 DIVFVLDGSGSIYP------------DDFQKVKNFLSTVMK-KLDIGPTKTQFGLVQYSESFRTEF-TLNEYRTKEEPLS 67 (177)
T ss_pred cEEEEEeCCCCCCH------------HHHHHHHHHHHHHHH-HcCcCCCCcEEEEEEECCceeEEE-ecCccCCHHHHHH
Confidence 69999999986551 357889999999997 666765 58999999999866554 554 24567778
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhh--hhcCCCceEEEEEEe--ecCC
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAK--KSRAQNRILRVILIY--CRSS 148 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~--~~~~~~~vvRVILiY--~RS~ 148 (259)
+++.+...+ +.-++..-.+.+.++.- .....+..-|++++. |+++
T Consensus 68 ~i~~~~~~~--g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~ 116 (177)
T cd01469 68 LVKHISQLL--GLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESH 116 (177)
T ss_pred HHHhCccCC--CCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCC
Confidence 887765322 22445544444444431 112233456666665 4444
No 33
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.29 E-value=0.051 Score=55.31 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=72.6
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc-ceeeecccCCCHHHHHHHh
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT-ASWLRKEFSSDIESTLTAV 103 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds-asWl~~~FTsd~~~i~~aL 103 (259)
.++|+||.|.-|. . ++|..+|.|+..|+.. ...++-+++|++++++ +.|+. ++|.+...+...|
T Consensus 409 ~v~fvvD~SGSM~----~--------~rl~~aK~av~~Ll~~--~~~~~D~v~Li~F~~~~a~~~l-p~t~~~~~~~~~L 473 (589)
T TIGR02031 409 LLIFVVDASGSAA----V--------ARMSEAKGAVELLLGE--AYVHRDQVSLIAFRGTAAEVLL-PPSRSVEQAKRRL 473 (589)
T ss_pred eEEEEEECCCCCC----h--------HHHHHHHHHHHHHHHh--hccCCCEEEEEEECCCCceEEC-CCCCCHHHHHHHH
Confidence 3889999999664 1 4799999999999863 3345668999999865 57887 9999999999999
Q ss_pred hccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe-ecCC
Q 025034 104 RGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIY-CRSS 148 (259)
Q Consensus 104 ~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY-~RS~ 148 (259)
..|...+. -+|..=+..+.+.++........-++|||= ||+|
T Consensus 474 ~~l~~gGg---TpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~n 516 (589)
T TIGR02031 474 DVLPGGGG---TPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGN 516 (589)
T ss_pred hcCCCCCC---CcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCC
Confidence 99875442 233333333444443333334445565553 5655
No 34
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=96.26 E-value=0.089 Score=42.85 Aligned_cols=71 Identities=17% Similarity=0.381 Sum_probs=50.8
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeeccc-CCC---HHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEF-SSD---IES 98 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~F-Tsd---~~~ 98 (259)
|=+|+|+||+|.-|. . .+++.+|+++..|+. .+.+.-+|+++++++++.++...+ ..+ .+.
T Consensus 2 ~~~v~~vlD~S~SM~----~--------~~~~~~~~al~~~l~---~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~ 66 (171)
T cd01461 2 PKEVVFVIDTSGSMS----G--------TKIEQTKEALLTALK---DLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAA 66 (171)
T ss_pred CceEEEEEECCCCCC----C--------hhHHHHHHHHHHHHH---hCCCCCEEEEEEeCCCceeecCcceeCCHHHHHH
Confidence 457999999999775 1 359999999999997 466677899999998876654222 233 344
Q ss_pred HHHHhhcccc
Q 025034 99 TLTAVRGISA 108 (259)
Q Consensus 99 i~~aL~~L~~ 108 (259)
+.+.|..+..
T Consensus 67 ~~~~l~~~~~ 76 (171)
T cd01461 67 AIEYVNRLQA 76 (171)
T ss_pred HHHHHHhcCC
Confidence 5555555654
No 35
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=95.95 E-value=0.1 Score=55.79 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=57.8
Q ss_pred CCCccccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeee
Q 025034 10 GAGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLR 89 (259)
Q Consensus 10 ~~~~~~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~ 89 (259)
+.|.|++.-. .+-.|+|+||+|.-|.. -.||+.+|+|++.|+..- +.++-+++|+++++++.|+.
T Consensus 293 ~~P~Fs~lq~--~~r~VVLVLDvSGSM~g-----------~dRL~~lkqAA~~fL~~~--l~~~DrVGLVtFsssA~vl~ 357 (863)
T TIGR00868 293 PPPTFSLLKI--RQRIVCLVLDKSGSMTV-----------EDRLKRMNQAAKLFLLQT--VEKGSWVGMVTFDSAAYIKN 357 (863)
T ss_pred CCCceeeccc--CCceEEEEEECCccccc-----------cCHHHHHHHHHHHHHHHh--CCCCCEEEEEEECCceeEee
Confidence 3455666532 22348899999997751 148999999999998754 56788999999999999997
Q ss_pred cccCC-----CHHHHHHHhh
Q 025034 90 KEFSS-----DIESTLTAVR 104 (259)
Q Consensus 90 ~~FTs-----d~~~i~~aL~ 104 (259)
+++. +.+.+...|.
T Consensus 358 -pLt~Its~~dr~aL~~~L~ 376 (863)
T TIGR00868 358 -ELIQITSSAERDALTANLP 376 (863)
T ss_pred -ccccCCcHHHHHHHHHhhc
Confidence 8872 4455555554
No 36
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=95.88 E-value=0.17 Score=41.30 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=48.3
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-CCccEEEEEecc--cceeeecccC--CCHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-PDHRFAFVTLAK--TASWLRKEFS--SDIEST 99 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-p~HeFAl~~L~d--sasWl~~~FT--sd~~~i 99 (259)
+|+|+||+|..|... ++..|+.+..++. ++.+. +..++|+++.++ .+.|.. +++ .+.+.+
T Consensus 2 dv~~llD~S~Sm~~~-------------~~~~~~~~~~~~~-~l~~~~~~~~v~lv~f~~~~~~~~~~-~l~~~~~~~~l 66 (163)
T cd01476 2 DLLFVLDSSGSVRGK-------------FEKYKKYIERIVE-GLEIGPTATRVALITYSGRGRQRVRF-NLPKHNDGEEL 66 (163)
T ss_pred CEEEEEeCCcchhhh-------------HHHHHHHHHHHHH-hcCCCCCCcEEEEEEEcCCCceEEEe-cCCCCCCHHHH
Confidence 689999999987632 3344555555554 33333 369999999998 676665 665 477889
Q ss_pred HHHhhcccc
Q 025034 100 LTAVRGISA 108 (259)
Q Consensus 100 ~~aL~~L~~ 108 (259)
...|..|..
T Consensus 67 ~~~i~~l~~ 75 (163)
T cd01476 67 LEKVDNLRF 75 (163)
T ss_pred HHHHHhCcc
Confidence 999988874
No 37
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=95.86 E-value=0.12 Score=52.25 Aligned_cols=74 Identities=18% Similarity=0.404 Sum_probs=55.8
Q ss_pred CCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecc-cC---CCH
Q 025034 21 ISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKE-FS---SDI 96 (259)
Q Consensus 21 ~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~-FT---sd~ 96 (259)
..|-.++||||.|.-|. + .+++..|+|+..+++ .+.+.-+|+++.+++++.|+... +. .+.
T Consensus 269 ~~p~~vvfvlD~SgSM~----g--------~~i~~ak~al~~~l~---~L~~~d~~~ii~F~~~~~~~~~~~~~~~~~~~ 333 (596)
T TIGR03788 269 VLPRELVFVIDTSGSMA----G--------ESIEQAKSALLLALD---QLRPGDRFNIIQFDSDVTLLFPVPVPATAHNL 333 (596)
T ss_pred CCCceEEEEEECCCCCC----C--------ccHHHHHHHHHHHHH---hCCCCCEEEEEEECCcceEeccccccCCHHHH
Confidence 35778999999999765 2 347889999998887 57788899999999999887522 12 234
Q ss_pred HHHHHHhhccccc
Q 025034 97 ESTLTAVRGISAT 109 (259)
Q Consensus 97 ~~i~~aL~~L~~~ 109 (259)
+.+...|..|.+.
T Consensus 334 ~~a~~~i~~l~a~ 346 (596)
T TIGR03788 334 ARARQFVAGLQAD 346 (596)
T ss_pred HHHHHHHhhCCCC
Confidence 5566677777654
No 38
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=95.59 E-value=0.12 Score=52.60 Aligned_cols=143 Identities=13% Similarity=0.178 Sum_probs=87.0
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc---------eeeecccC
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA---------SWLRKEFS 93 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa---------sWl~~~FT 93 (259)
-|=||||||+++.|..+. ..+...++|..+-++|.++++.|...+|+.+.|++..|-.- .++..++.
T Consensus 10 keailflIDvs~sM~~~~----~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~ 85 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEES----QGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELD 85 (584)
T ss_pred eeEEEEEEECCHHHcCCC----cCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCC
Confidence 488999999999988532 12346799999999999999999999999999999998321 11122454
Q ss_pred CCHHHHHHHhhcccccccc----------CCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCCcccc--------C
Q 025034 94 SDIESTLTAVRGISATSAC----------GQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVRPQHQ--------W 155 (259)
Q Consensus 94 sd~~~i~~aL~~L~~~~~~----------~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~P~~~--------~ 155 (259)
.---+.+..|++|..+... ...+|...+-........ ....+.-|=|++..- +--|+-. +
T Consensus 86 ~p~a~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~-~~~k~~~kRI~lfTd-~D~P~~~~~~~~~~a~ 163 (584)
T TIGR00578 86 NPGAKRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSD-VQFRMSHKRIMLFTN-EDNPHGNDSAKASRAR 163 (584)
T ss_pred CCCHHHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHh-cchhhcCcEEEEECC-CCCCCCCchhHHHHHH
Confidence 4333444555656543111 223544444444443321 122455555555553 3335421 1
Q ss_pred C----CCCCceEEEEEeecC
Q 025034 156 P----VNQKLFTMDVLYLHD 171 (259)
Q Consensus 156 ~----~~~p~FflDVvYlHd 171 (259)
. +.+-.+.++.+.|.-
T Consensus 164 ~~a~dl~~~gi~ielf~l~~ 183 (584)
T TIGR00578 164 TKAGDLRDTGIFLDLMHLKK 183 (584)
T ss_pred HHHHHHHhcCeEEEEEecCC
Confidence 0 234577788877754
No 39
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=95.49 E-value=0.38 Score=39.02 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=59.3
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHHhh
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVR 104 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~aL~ 104 (259)
+|+||||+|.-|.. +++...|.++..+...=.. +..++++++++++..+....-+++...++..|.
T Consensus 2 ~v~illD~SgSM~~------------~k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~ 67 (152)
T cd01462 2 PVILLVDQSGSMYG------------APEEVAKAVALALLRIALA--ENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLS 67 (152)
T ss_pred CEEEEEECCCCCCC------------CHHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCceEEecCCcccHHHHHHHHh
Confidence 58999999997751 2577788888777764333 467899999998733322245677788888777
Q ss_pred ccccccccCCCChhHHHHHHHHHh
Q 025034 105 GISATSACGQADLTHLFKLASHEA 128 (259)
Q Consensus 105 ~L~~~~~~~~~DL~~LF~~i~~e~ 128 (259)
.+... +.-|+..-++.+....
T Consensus 68 ~~~~~---ggT~l~~al~~a~~~l 88 (152)
T cd01462 68 GVQLG---GGTDINKALRYALELI 88 (152)
T ss_pred cCCCC---CCcCHHHHHHHHHHHH
Confidence 66432 3447777776665543
No 40
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=95.13 E-value=0.23 Score=51.00 Aligned_cols=109 Identities=12% Similarity=0.219 Sum_probs=71.3
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCC-ccEEEEEecccceeeecccCCC----HH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPD-HRFAFVTLAKTASWLRKEFSSD----IE 97 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~-HeFAl~~L~dsasWl~~~FTsd----~~ 97 (259)
.=+|+|+||.|.-|+. -+.++.+|+.+..||. ++.++++ -.++++++.+.+.|+. .++++ .+
T Consensus 42 ~lDIvFLLD~SgSMg~-----------~Nfle~AK~Fa~~LV~-~l~Is~D~V~VgiV~FSd~~r~vf-pL~s~~s~Dk~ 108 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGY-----------HNWITHVIPMLMGLIQ-QLNLSDDAINLYMSLFSNNTTELI-RLGSGASKDKE 108 (576)
T ss_pred CceEEEEEeCCCccCC-----------ccHHHHHHHHHHHHHH-HhccCCCceEEEEEEeCCCceEEE-ecCCCccccHH
Confidence 4589999999997751 1557888999999988 4445544 5777789999999998 88654 35
Q ss_pred HHHHHhhcccccc-ccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe
Q 025034 98 STLTAVRGISATS-ACGQADLTHLFKLASHEAKKSRAQNRILRVILIY 144 (259)
Q Consensus 98 ~i~~aL~~L~~~~-~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY 144 (259)
.++.+|..|..+. ..+.-++..-++.+++.........-+.|+|+|.
T Consensus 109 ~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILL 156 (576)
T PTZ00441 109 QALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILM 156 (576)
T ss_pred HHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEE
Confidence 7778887776432 2244555555555544433222223355666665
No 41
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=94.76 E-value=0.65 Score=39.32 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=60.6
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCC-ccEEEEEecccceeeecccC--CCHHHHH
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPD-HRFAFVTLAKTASWLRKEFS--SDIESTL 100 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~-HeFAl~~L~dsasWl~~~FT--sd~~~i~ 100 (259)
.||+|.||.|..+.. ..++.+|+-+..+|.. +.|.++ .++|+++.++.+.+.. +|. .+.+++.
T Consensus 1 ~DivfllD~S~Si~~------------~~f~~~k~fi~~lv~~-f~i~~~~~rVgvv~ys~~~~~~~-~l~~~~~~~~l~ 66 (165)
T cd01481 1 KDIVFLIDGSDNVGS------------GNFPAIRDFIERIVQS-LDVGPDKIRVAVVQFSDTPRPEF-YLNTHSTKADVL 66 (165)
T ss_pred CCEEEEEeCCCCcCH------------HHHHHHHHHHHHHHhh-ccCCCCCcEEEEEEecCCeeEEE-eccccCCHHHHH
Confidence 489999999997652 3366777777777753 566655 8999999998765554 443 4788999
Q ss_pred HHhhccccccccCCCChhHHHHHHHHH
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHE 127 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e 127 (259)
++|+.+...+. ...+...-.+.+..+
T Consensus 67 ~~i~~i~~~~g-~~t~t~~AL~~~~~~ 92 (165)
T cd01481 67 GAVRRLRLRGG-SQLNTGSALDYVVKN 92 (165)
T ss_pred HHHHhcccCCC-CcccHHHHHHHHHHh
Confidence 99998864321 123555555555443
No 42
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=94.75 E-value=0.44 Score=48.93 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=59.6
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeeecccCCCHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLRKEFSSDIESTLT 101 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~~~FTsd~~~i~~ 101 (259)
.-.|+|+||+|.-|.. .++|...|.++..|+.. ...++.+++|+++++ .+.|+. ++|++.+.+..
T Consensus 465 ~~~vv~vvD~SgSM~~-----------~~rl~~ak~a~~~ll~~--a~~~~D~v~lI~F~g~~a~~~~-p~t~~~~~~~~ 530 (633)
T TIGR02442 465 GNLVIFVVDASGSMAA-----------RGRMAAAKGAVLSLLRD--AYQKRDKVALITFRGEEAEVLL-PPTSSVELAAR 530 (633)
T ss_pred CceEEEEEECCccCCC-----------ccHHHHHHHHHHHHHHH--hhcCCCEEEEEEECCCCceEEc-CCCCCHHHHHH
Confidence 3468999999997751 15899999999999764 345678999999985 588998 99999999999
Q ss_pred Hhhccccc
Q 025034 102 AVRGISAT 109 (259)
Q Consensus 102 aL~~L~~~ 109 (259)
.|..|...
T Consensus 531 ~L~~l~~g 538 (633)
T TIGR02442 531 RLEELPTG 538 (633)
T ss_pred HHHhCCCC
Confidence 99888754
No 43
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=94.33 E-value=0.9 Score=37.93 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=52.9
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc------eeee-cccCCCH-
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA------SWLR-KEFSSDI- 96 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa------sWl~-~~FTsd~- 96 (259)
.|+|+||+|.-|.. . ++++..|+|+..|+..=.. +.-+|+++++++++ .|+. ++|+...
T Consensus 2 ~v~~llD~SgSM~~---------~--~kl~~ak~a~~~l~~~l~~--~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~ 68 (174)
T cd01454 2 AVTLLLDLSGSMRS---------D--RRIDVAKKAAVLLAEALEA--CGVPHAILGFTTDAGGRERVRWIKIKDFDESLH 68 (174)
T ss_pred EEEEEEECCCCCCC---------C--cHHHHHHHHHHHHHHHHHH--cCCcEEEEEecCCCCCccceEEEEecCcccccc
Confidence 37899999997761 1 7899999999999885433 56799999998763 5764 2565553
Q ss_pred HHHHHHhhcccccc
Q 025034 97 ESTLTAVRGISATS 110 (259)
Q Consensus 97 ~~i~~aL~~L~~~~ 110 (259)
..+...|..+.+.+
T Consensus 69 ~~~~~~l~~~~~~g 82 (174)
T cd01454 69 ERARKRLAALSPGG 82 (174)
T ss_pred hhHHHHHHccCCCC
Confidence 35667777776543
No 44
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=93.90 E-value=0.2 Score=41.99 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=45.1
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcC---CCCccEEEEEecccceeeecccCCC
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSI---NPDHRFAFVTLAKTASWLRKEFSSD 95 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i---~p~HeFAl~~L~dsasWl~~~FTsd 95 (259)
.|+|+||.|.-|.. .+++.+|+|+..|+..-..- .++-++++++.++++.++. ++|..
T Consensus 5 ~v~~llD~SgSM~~------------~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~-~l~~~ 65 (176)
T cd01464 5 PIYLLLDTSGSMAG------------EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIV-PLTPL 65 (176)
T ss_pred CEEEEEECCCCCCC------------hHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEec-CCccH
Confidence 48999999997652 34888999999998752211 1356899999999999998 88763
No 45
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=93.53 E-value=1.2 Score=38.25 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=57.1
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
+.+++|+||.|.-|..+.+ +...++++..|+++..++..=...+.+ ..+++.+.+...|+. +.+ ...+...
T Consensus 2 ~~dvv~~ID~SgSM~~~~~-----~~~~~k~~~ak~~~~~l~~~~~~~D~d-~i~l~~f~~~~~~~~-~~~--~~~v~~~ 72 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADE-----AKERSRWEEAQESTRALARKCEEYDSD-GITVYLFSGDFRRYD-NVN--SSKVDQL 72 (199)
T ss_pred CcCEEEEEECCCcCCCCCC-----CCCchHHHHHHHHHHHHHHHHHhcCCC-CeEEEEecCCccccC-CcC--HHHHHHH
Confidence 4689999999998874331 124579999999999999744444444 477888888888886 665 7777777
Q ss_pred hhccccc
Q 025034 103 VRGISAT 109 (259)
Q Consensus 103 L~~L~~~ 109 (259)
+..+.+.
T Consensus 73 ~~~~~p~ 79 (199)
T cd01457 73 FAENSPD 79 (199)
T ss_pred HhcCCCC
Confidence 7666543
No 46
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=93.37 E-value=0.98 Score=39.23 Aligned_cols=110 Identities=13% Similarity=0.182 Sum_probs=65.6
Q ss_pred cEEEEEeCChhhhhh-hhccCCCCCccCHhHHHHHHHHHHHHhhhcCCC-CccEEEEEecccceeeecccCC----CHHH
Q 025034 25 DIIFCVDVDAESLVE-MKSTGFNGKPITRLDAMKQAILLFVNSKLSINP-DHRFAFVTLAKTASWLRKEFSS----DIES 98 (259)
Q Consensus 25 kIIfCiD~~~E~~~~-~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p-~HeFAl~~L~dsasWl~~~FTs----d~~~ 98 (259)
+|+|.||.|.-|... |+. ...+.+|+.+..|. |++ +-++|+++..+.+.+.. +|+. |..+
T Consensus 2 Di~fllD~S~Si~~~~f~~--------~~~~f~~~lv~~l~-----i~~~~~rvgvv~fs~~~~~~~-~~~~~~~~~~~~ 67 (192)
T cd01473 2 DLTLILDESASIGYSNWRK--------DVIPFTEKIINNLN-----ISKDKVHVGILLFAEKNRDVV-PFSDEERYDKNE 67 (192)
T ss_pred cEEEEEeCCCcccHHHHHH--------HHHHHHHHHHHhCc-----cCCCccEEEEEEecCCceeEE-ecCcccccCHHH
Confidence 799999999987732 311 12455666655553 443 57999999999988877 7774 4678
Q ss_pred HHHHhhccccc-cccCCCChhHHHHHHHHHhhhh---cCC-CceEEEEEEeecCCC
Q 025034 99 TLTAVRGISAT-SACGQADLTHLFKLASHEAKKS---RAQ-NRILRVILIYCRSSV 149 (259)
Q Consensus 99 i~~aL~~L~~~-~~~~~~DL~~LF~~i~~e~~~~---~~~-~~vvRVILiY~RS~~ 149 (259)
++.+|+.+... ...+.=++..-.+.+.+..... ++. +.++ ++|--|+|+.
T Consensus 68 l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~-IllTDG~s~~ 122 (192)
T cd01473 68 LLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVT-MLFTDGNDTS 122 (192)
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEE-EEEecCCCCC
Confidence 88888887632 1122224444444443333221 111 3332 5555677764
No 47
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=92.82 E-value=0.93 Score=43.97 Aligned_cols=112 Identities=15% Similarity=0.274 Sum_probs=80.0
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc-ceeeecccCCCHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT-ASWLRKEFSSDIESTLT 101 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds-asWl~~~FTsd~~~i~~ 101 (259)
--..+++||.|+-|.. +-+ .-+|+.++-|.++-||+.=.-=||--+-+|+++.|+ |.-+. ++|++++.-+.
T Consensus 60 iRhl~iviD~S~am~e-~Df------~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt-~ltgnp~~hI~ 131 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEE-KDF------RPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLT-DLTGNPRIHIH 131 (378)
T ss_pred heeEEEEEEhhhhhhh-ccC------CchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHH-HhcCCHHHHHH
Confidence 3468999999998883 323 348999999999999999999999999999999986 66666 99999999999
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEE-EEEEeec
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILR-VILIYCR 146 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvR-VILiY~R 146 (259)
+|.++.+. .+.|-|-.-.+++. ..+..-|.++-| |++||+-
T Consensus 132 aL~~~~~~--~g~fSLqNaLe~a~--~~Lk~~p~H~sREVLii~ss 173 (378)
T KOG2807|consen 132 ALKGLTEC--SGDFSLQNALELAR--EVLKHMPGHVSREVLIIFSS 173 (378)
T ss_pred HHhccccc--CCChHHHHHHHHHH--HHhcCCCcccceEEEEEEee
Confidence 99999832 13333322222221 122233466656 4455653
No 48
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=91.77 E-value=0.5 Score=42.20 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=50.1
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHh--hhcCCCCccEEEEEecccceeee-----cccCCCH-
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNS--KLSINPDHRFAFVTLAKTASWLR-----KEFSSDI- 96 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~--K~~i~p~HeFAl~~L~dsasWl~-----~~FTsd~- 96 (259)
+|+++||+|.-|.. |. +.+|+..+||+.+|..++.|+.. |-..+ +.+ +...+.++. ++.|.|.
T Consensus 2 ~l~lavDlSgSM~~-~~--~~dg~~~~RL~a~k~v~~~f~~f~~~r~~D---riG---~~g~~~~~~~lt~d~p~t~d~~ 72 (191)
T cd01455 2 RLKLVVDVSGSMYR-FN--GYDGRLDRSLEAVVMVMEAFDGFEDKIQYD---IIG---HSGDGPCVPFVKTNHPPKNNKE 72 (191)
T ss_pred ceEEEEECcHhHHH-Hh--ccCCccccHHHHHHHHHHHHHHHHHhCccc---eee---ecCcccccCccccccCcccchh
Confidence 69999999999983 53 46899999999999999999853 22222 333 344444443 1334444
Q ss_pred --HHHHHHhhcccc
Q 025034 97 --ESTLTAVRGISA 108 (259)
Q Consensus 97 --~~i~~aL~~L~~ 108 (259)
+.+...|..+..
T Consensus 73 ~~~~l~~~l~~~q~ 86 (191)
T cd01455 73 RLETLKMMHAHSQF 86 (191)
T ss_pred HHHHHHHHHHhccc
Confidence 567777776554
No 49
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=88.06 E-value=2.1 Score=39.28 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHh-----hh-cCCCCccEEEEEeccc-------ceee
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNS-----KL-SINPDHRFAFVTLAKT-------ASWL 88 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~-----K~-~i~p~HeFAl~~L~ds-------asWl 88 (259)
...+||||||-.+-|.-.|+. -+-+.+-..|+.|-.. +. .=....+|||++.+.- ++|.
T Consensus 12 ~~~~vVfvvEgTAalgpy~~~--------Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~ 83 (226)
T PF11265_consen 12 PQAQVVFVVEGTAALGPYWNT--------LKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRS 83 (226)
T ss_pred ccceEEEEEecchhhhhhHHH--------HHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceecc
Confidence 367899999999988865542 4567888899998531 11 0135689999999953 3343
Q ss_pred ecccCCCHHHHHHHhhcccccc
Q 025034 89 RKEFSSDIESTLTAVRGISATS 110 (259)
Q Consensus 89 ~~~FTsd~~~i~~aL~~L~~~~ 110 (259)
++|+|+..++..|+.|.-.+
T Consensus 84 --g~T~~~~~fl~~L~~I~f~G 103 (226)
T PF11265_consen 84 --GPTSSPQKFLQWLDAIQFSG 103 (226)
T ss_pred --CCcCCHHHHHHHHHccCcCC
Confidence 89999999999999998754
No 50
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=86.23 E-value=12 Score=34.35 Aligned_cols=174 Identities=16% Similarity=0.239 Sum_probs=117.3
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeeecccCCCHHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLRKEFSSDIESTL 100 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~~~FTsd~~~i~ 100 (259)
.+|-+|+.||-++-|.. ..-.-||+..=|.++++-+..|.-=||...-+|+.+.+ ...-|+ -||.+..-++
T Consensus 2 vlEatvvliDNse~s~N-------gDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vls-T~T~~~gkil 73 (243)
T COG5148 2 VLEATVVLIDNSEASQN-------GDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLS-TPTKQRGKIL 73 (243)
T ss_pred CcceEEEEEeChhhhhc-------CCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhc-cchhhhhHHH
Confidence 57999999999886552 12455899999999999999999999999999999997 577787 9999999999
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCCccc-----cCCCCCCceEEEEEeecCCCCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVRPQH-----QWPVNQKLFTMDVLYLHDKPGP 175 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~P~~-----~~~~~~p~FflDVvYlHd~~~~ 175 (259)
+.|.++.- .+..|+..-...++...+..+.+.-.-|.+.+-|-+-+--.= -..++..+-.+|++++-+-.+.
T Consensus 74 t~lhd~~~---~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~n~ 150 (243)
T COG5148 74 TFLHDIRL---HGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAANM 150 (243)
T ss_pred HHhccccc---cCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhhhh
Confidence 99998763 345666655554444455555555456666666543211110 0124567889999998765532
Q ss_pred CCChHHHHHHHHHhhhhcCCCceeEEEcC-cchHHHHHHHH
Q 025034 176 DNCPQKVYDALVDALEHVSENEGYIFESG-QGLARILFRQM 215 (259)
Q Consensus 176 dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg-~~~a~~L~~~m 215 (259)
...|..+ |+-+. ..+-.+||- -|. +-|++.+
T Consensus 151 ----~~l~efI-da~N~---~dsshl~~~~P~p-~ll~~~~ 182 (243)
T COG5148 151 ----AGLFEFI-DATNF---SDSSHLEVKPPNP-ELLDRVL 182 (243)
T ss_pred ----hHHHHHH-Hhhcc---ccceeeEecCCCH-HHHHhhc
Confidence 2233333 44432 345566655 666 5566643
No 51
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=83.76 E-value=3.4 Score=36.88 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=37.1
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
-.||+||++.+.-. + .-++.++++|...+.+- --+++.++||+|+++.++..
T Consensus 5 ~~vFvID~s~~ai~----~-------~~l~~~~~sl~~~l~~l-p~~~~~~igiITf~~~V~~~ 56 (239)
T cd01468 5 VFVFVIDVSYEAIK----E-------GLLQALKESLLASLDLL-PGDPRARVGLITYDSTVHFY 56 (239)
T ss_pred EEEEEEEcchHhcc----c-------cHHHHHHHHHHHHHHhC-CCCCCcEEEEEEeCCeEEEE
Confidence 46999999998531 0 12677888887777641 12499999999998766555
No 52
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=82.34 E-value=3.2 Score=36.94 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=36.4
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
-.+||||++.+.-. - ..++.++++|...+. .+.-+++.++||++.+..+...
T Consensus 5 ~y~FvID~s~~av~-~----------g~~~~~~~sl~~~l~-~l~~~~~~~vgiitfd~~V~~y 56 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ-S----------GLLQSLIESLKSALD-SLPGDERTRVGIITFDSSVHFY 56 (243)
T ss_dssp EEEEEEE-SHHHHH-H----------THHHHHHHHHHHHGC-TSSTSTT-EEEEEEESSSEEEE
T ss_pred EEEEEEECchhhhh-c----------cHHHHHHHHHHHHHH-hccCCCCcEEEEEEeCCEEEEE
Confidence 47999999998441 0 237888888888884 2223599999999998766554
No 53
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.31 E-value=7.7 Score=41.74 Aligned_cols=63 Identities=19% Similarity=0.380 Sum_probs=52.7
Q ss_pred CccccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 12 GRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 12 ~~~~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
++|.|+|+ .|--++|+||+|.++... --|+.++++|..=+-.+. -|+|.+++|+++..+...+
T Consensus 285 ~eYmlR~P--~Pavy~FliDVS~~a~ks-----------G~L~~~~~slL~~LD~lp-gd~Rt~igfi~fDs~ihfy 347 (887)
T KOG1985|consen 285 SEYMLRPP--QPAVYVFLIDVSISAIKS-----------GYLETVARSLLENLDALP-GDPRTRIGFITFDSTIHFY 347 (887)
T ss_pred cccccCCC--CCceEEEEEEeehHhhhh-----------hHHHHHHHHHHHhhhcCC-CCCcceEEEEEeeceeeEE
Confidence 57999997 799999999999986631 138889999998888877 8999999999998776655
No 54
>PHA02723 hypothetical protein; Provisional
Probab=70.81 E-value=3.5 Score=31.40 Aligned_cols=23 Identities=39% Similarity=0.743 Sum_probs=18.3
Q ss_pred EEEEeecCCCCccccCCCCCCc-eEEEEEeec
Q 025034 140 VILIYCRSSVRPQHQWPVNQKL-FTMDVLYLH 170 (259)
Q Consensus 140 VILiY~RS~~~P~~~~~~~~p~-FflDVvYlH 170 (259)
|=+|-|||+ .+++| ||+|++|.-
T Consensus 48 vnfimcrsn--------lnn~~i~~~~~iy~~ 71 (77)
T PHA02723 48 VNFIMCRSN--------LNNIFIFFLDCIYTI 71 (77)
T ss_pred eeeeEeccc--------CCCceeeeeheEeee
Confidence 446779999 77876 899999964
No 55
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=63.94 E-value=21 Score=32.24 Aligned_cols=51 Identities=24% Similarity=0.456 Sum_probs=35.8
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC---CCccEEEEEecccceee
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN---PDHRFAFVTLAKTASWL 88 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~---p~HeFAl~~L~dsasWl 88 (259)
=-.+|+||++.+... +| -++.++++|..-+.. +. ++.+.||+|.+..+...
T Consensus 4 p~~~FvIDvs~~a~~-------~g----~~~~~~~si~~~L~~---lp~~~~~~~VgiITfd~~v~~y 57 (244)
T cd01479 4 AVYVFLIDVSYNAIK-------SG----LLATACEALLSNLDN---LPGDDPRTRVGFITFDSTLHFF 57 (244)
T ss_pred CEEEEEEEccHHHHh-------hC----hHHHHHHHHHHHHHh---cCCCCCCeEEEEEEECCeEEEE
Confidence 358999999987541 11 256666666666652 43 66999999999887766
No 56
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=60.36 E-value=19 Score=38.05 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=51.4
Q ss_pred EEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCC--ccEEEEEeccc-----ceeeecccCCCHHH
Q 025034 26 IIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPD--HRFAFVTLAKT-----ASWLRKEFSSDIES 98 (259)
Q Consensus 26 IIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~--HeFAl~~L~ds-----asWl~~~FTsd~~~ 98 (259)
++|.||+|.-|+. |. --..|-||..|.||+.|++-..+..-. -+|-|.|..+- +.|-. .-..
T Consensus 4 ~lFllDTS~SM~q--ra----h~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~-----~~a~ 72 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQ--RA----HPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEK-----LGAV 72 (888)
T ss_pred EEEEEecccchhh--hc----cCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhh-----cccH
Confidence 6899999999883 11 123788999999999999877775433 68888888653 45543 2345
Q ss_pred HHHHhhccccc
Q 025034 99 TLTAVRGISAT 109 (259)
Q Consensus 99 i~~aL~~L~~~ 109 (259)
+++-|+.|.+.
T Consensus 73 ~~~eik~l~a~ 83 (888)
T KOG3768|consen 73 VIEEIKKLHAP 83 (888)
T ss_pred HHHHHHhhcCc
Confidence 66667776653
No 57
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=60.35 E-value=55 Score=32.10 Aligned_cols=177 Identities=16% Similarity=0.252 Sum_probs=105.1
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc-ceeeecccCCCHHHHHHH
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT-ASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds-asWl~~~FTsd~~~i~~a 102 (259)
-..++.||+|+.|.. --+ --+|..++-|-.+-||+.=..=||--+-.++.+.|+ |..++ ....|+++-+.+
T Consensus 88 Rhl~l~lD~Seam~e-~Df------~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s-~~~gnpq~hi~~ 159 (421)
T COG5151 88 RHLHLILDVSEAMDE-SDF------LPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTS-SMDGNPQAHIGQ 159 (421)
T ss_pred heeEEEEEhhhhhhh-hhc------cchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhh-hcCCCHHHHHHH
Confidence 457899999999884 112 237788888888999999999999999999999997 77776 888999999999
Q ss_pred hhccccccccCCCChhHHHHHHHHHhhhhcCCCc-eEEEEEEeecCC-CCcc--ccCCCCCCceEEEEEeecCCCCCCCC
Q 025034 103 VRGISATSACGQADLTHLFKLASHEAKKSRAQNR-ILRVILIYCRSS-VRPQ--HQWPVNQKLFTMDVLYLHDKPGPDNC 178 (259)
Q Consensus 103 L~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~-vvRVILiY~RS~-~~P~--~~~~~~~p~FflDVvYlHd~~~~dnc 178 (259)
|.++-. ..+.|-|..-.+++ .+++...... +=-|++|+|--+ .=|. ++...+=-..-+-|=++ .-|
T Consensus 160 lkS~rd--~~gnfSLqNaLEma--r~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~~IrV~~i------gL~ 229 (421)
T COG5151 160 LKSKRD--CSGNFSLQNALEMA--RIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVAYNIRVHFI------GLC 229 (421)
T ss_pred hhcccc--cCCChhHHhHHHHh--hhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHhhceEEEEE------eeh
Confidence 988872 22455444433322 1222222223 444556666433 2232 00000000000111111 113
Q ss_pred h-HHHHHHHHHhhhhcCCCceeEEEcC-cchHHHHHHHHHhhccCCCC
Q 025034 179 P-QKVYDALVDALEHVSENEGYIFESG-QGLARILFRQMCVLLSHPQQ 224 (259)
Q Consensus 179 ~-q~Vyd~L~~~ld~~s~~~sYi~Evg-~~~a~~L~~~ma~LLaHPLQ 224 (259)
. ..||..||.+-+...++ .|..-+. +++ +.|++- +.||+-
T Consensus 230 aevaicKeickaTn~~~e~-~y~v~vde~Hl-~el~~E----~~~P~~ 271 (421)
T COG5151 230 AEVAICKEICKATNSSTEG-RYYVPVDEGHL-SELMRE----LSHPTD 271 (421)
T ss_pred hHHHHHHHHHhhcCcCcCc-eeEeeecHHHH-HHHHHh----cCCCCC
Confidence 2 46788888766543333 3333455 666 677774 578863
No 58
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=53.68 E-value=64 Score=29.83 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=33.9
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
-.+|+||++.+.. + +..+|++|..-+. .+-++-+.+|+|.+.++...
T Consensus 5 ~~vFviDvs~~~~-e-------------l~~l~~sl~~~L~---~lP~~a~VGlITfd~~V~~~ 51 (267)
T cd01478 5 VFLFVVDTCMDEE-E-------------LDALKESLIMSLS---LLPPNALVGLITFGTMVQVH 51 (267)
T ss_pred EEEEEEECccCHH-H-------------HHHHHHHHHHHHH---hCCCCCEEEEEEECCEEEEE
Confidence 4799999999744 2 4445555554443 37778899999999887665
No 59
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=50.44 E-value=96 Score=32.01 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
-|+.|-+.|+|..|... +|+..= |+.+++--. -.+-=.=-++|+..+..|+. .+.+ ++.+.
T Consensus 340 l~n~iav~DvSGSM~~~------------pm~vai-aLgll~ae~--~~~pf~~~~ITFs~~P~~~~--i~g~--~l~ek 400 (534)
T PF11443_consen 340 LENCIAVCDVSGSMSGP------------PMDVAI-ALGLLIAEL--NKGPFKGRFITFSENPQLHK--IKGD--TLREK 400 (534)
T ss_pred ccceEEEEecCCccCcc------------HHHHHH-HHHHHHHHh--cccccCCeEEeecCCceEEE--ecCC--CHHHH
Confidence 47899999999987731 565544 444444322 12222335889999999985 3333 66777
Q ss_pred hhccccccccCCCChhHHHHHHHHHhhhhc-CCCceEEEEEEee
Q 025034 103 VRGISATSACGQADLTHLFKLASHEAKKSR-AQNRILRVILIYC 145 (259)
Q Consensus 103 L~~L~~~~~~~~~DL~~LF~~i~~e~~~~~-~~~~vvRVILiY~ 145 (259)
++.+....-...-||..+|++|...+.... +|.-.+..|+|++
T Consensus 401 v~~~~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~S 444 (534)
T PF11443_consen 401 VRFIRRMDWGMNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFS 444 (534)
T ss_pred HHHHHhCCcccCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEe
Confidence 777765555678899999999988765443 3434455555554
No 60
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=47.18 E-value=31 Score=29.05 Aligned_cols=52 Identities=17% Similarity=0.466 Sum_probs=30.8
Q ss_pred EEEEeecCCCCccccCCCCCCceEEEEEeec---------C-CCC-CCCChHHHHHHHHHhhhhcCCCce--eEEEcCcc
Q 025034 140 VILIYCRSSVRPQHQWPVNQKLFTMDVLYLH---------D-KPG-PDNCPQKVYDALVDALEHVSENEG--YIFESGQG 206 (259)
Q Consensus 140 VILiY~RS~~~P~~~~~~~~p~FflDVvYlH---------d-~~~-~dnc~q~Vyd~L~~~ld~~s~~~s--Yi~Evg~~ 206 (259)
++++|.|..... -|..+-+ +.||++|+= + +|. ..+| +++.. |++|+..|
T Consensus 43 MLFv~~~~~~~~--~wMknt~-lpLDiiFid~dg~i~~i~~~~P~~~~~~---------------~~~~~~~yvLEl~~G 104 (126)
T COG1430 43 MLFVFPETRRVA--FWMKNTM-LPLDIIFIDSDGRVVDIVELVPWSTYPC---------------KSYGPVRYVLELPAG 104 (126)
T ss_pred EEEecCCCceeE--EeeecCC-cceEEEEEcCCCCEEEEEeccccccCCC---------------CCCCCccEEEEecCC
Confidence 799999554333 3544434 338888876 2 111 1222 23555 99999998
Q ss_pred hHH
Q 025034 207 LAR 209 (259)
Q Consensus 207 ~a~ 209 (259)
.+.
T Consensus 105 ~~~ 107 (126)
T COG1430 105 WAA 107 (126)
T ss_pred chh
Confidence 864
No 61
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=46.25 E-value=3.3e+02 Score=28.99 Aligned_cols=119 Identities=12% Similarity=0.048 Sum_probs=74.5
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-CCccEEEEEec-cc-------------cee
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-PDHRFAFVTLA-KT-------------ASW 87 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-p~HeFAl~~L~-ds-------------asW 87 (259)
.|-++|.+|++..|+. .++...+.+.-.+.++.+||-.|+.=+ +.-.|+++..+ |. .+-
T Consensus 4 se~ttfilDvG~~Ms~------~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisv 77 (669)
T KOG2326|consen 4 SESTTFILDVGPSMSK------NNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISV 77 (669)
T ss_pred CcceEEEEecCccccc------cCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEE
Confidence 4567777799999883 236777899999999999999999999 77899999887 21 223
Q ss_pred eecccCCCHHHHHHHhhccccccccCCCChhHHHHHHHHHhh--hhcCCCceEEEEEEeecCC
Q 025034 88 LRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAK--KSRAQNRILRVILIYCRSS 148 (259)
Q Consensus 88 l~~~FTsd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~--~~~~~~~vvRVILiY~RS~ 148 (259)
+..=+|.+.-...+-+...-.+++ ...|+.++.-.++-..- ...+..+=-|-|++..|=+
T Consensus 78 l~p~~tpaf~~l~k~~~~~~qqns-~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~ 139 (669)
T KOG2326|consen 78 LAPVTTPAFIGLIKRLKQYCQQNS-HQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLF 139 (669)
T ss_pred eecccchhhHHHHHHHHHhcCCCc-cccchhhhHHHHHHHHHHHHhccchhhceEEEEeeccc
Confidence 333345555555555443332222 33355554443333221 2234566677777776644
No 62
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.93 E-value=32 Score=37.57 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=52.2
Q ss_pred ccccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 13 RFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 13 ~~~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
+|..+.....|-..||-||+|-... .+|...-.-+.||+.|+.+.+ ..|+-+-|+++.+++...+
T Consensus 407 ~Y~~~~k~p~ppafvFmIDVSy~Ai-------~~G~~~a~ce~ik~~l~~lp~----~~p~~~Vgivtfd~tvhFf 471 (1007)
T KOG1984|consen 407 DYCRKTKPPKPPAFVFMIDVSYNAI-------SNGAVKAACEAIKSVLEDLPR----EEPNIRVGIVTFDKTVHFF 471 (1007)
T ss_pred hhhhcCCCCCCceEEEEEEeehhhh-------hcchHHHHHHHHHHHHhhcCc----cCCceEEEEEEecceeEee
Confidence 4666654456888999999998765 245666667889999999988 8999999999999987776
No 63
>PRK14639 hypothetical protein; Provisional
Probab=41.58 E-value=36 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHhhhhcCC-CceeEEEcC-cchHHHH
Q 025034 178 CPQKVYDALVDALEHVSE-NEGYIFESG-QGLARIL 211 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~a~~L 211 (259)
-|+++-..+.+.||...- ...|.+||| -|+-|.|
T Consensus 42 dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL 77 (140)
T PRK14639 42 DCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKL 77 (140)
T ss_pred HHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcC
Confidence 378889899888885211 469999988 6774333
No 64
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=38.85 E-value=22 Score=32.30 Aligned_cols=42 Identities=19% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEEeecCCCCCC----CChHHHHH----HHHHhhhhcCCCceeEEEcCc
Q 025034 163 TMDVLYLHDKPGPD----NCPQKVYD----ALVDALEHVSENEGYIFESGQ 205 (259)
Q Consensus 163 flDVvYlHd~~~~d----nc~q~Vyd----~L~~~ld~~s~~~sYi~Evg~ 205 (259)
=+|+||+|++.... --.++.|. .|+..|... -..|++|||.-
T Consensus 146 DiDLifvy~~~~~~~~~~~~~~~~~~rl~~~~~~~ls~~-t~~G~ly~vD~ 195 (247)
T PF03710_consen 146 DIDLIFVYDPDGETGRRSISNQEFFTRLAQRLIRLLSER-TAEGFLYRVDL 195 (247)
T ss_dssp -EEEEEEE---TT-SSS-SBHHHHHHHHHHHHHHHHH---BTTB-S--EE-
T ss_pred CCceEEEeccccccccChhhHHHHHHHHHHHHHHHhcCC-CCCCCeEeecC
Confidence 48999999988764 22344454 555556543 36899999963
No 65
>PRK02001 hypothetical protein; Validated
Probab=38.10 E-value=28 Score=29.96 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHhhhhcCCCceeEEEcC-cchHHHHHH--HHHhhccCC
Q 025034 178 CPQKVYDALVDALEHVSENEGYIFESG-QGLARILFR--QMCVLLSHP 222 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~~~sYi~Evg-~~~a~~L~~--~ma~LLaHP 222 (259)
-|+++-..|.+.||.. ..+|.+||| -|+-|.|.. ++...++++
T Consensus 47 dC~~vSr~is~~LD~~--d~~Y~LEVSSPGldRpL~~~~~f~r~~G~~ 92 (152)
T PRK02001 47 DCVELSRAIEHNLDRE--EEDFELEVGSAGLTSPLKVPRQYKKNIGRE 92 (152)
T ss_pred HHHHHHHHHHHHhcCC--CCCeEEEEeCCCCCCcCCCHHHHHHhCCCE
Confidence 4788999999999963 479999988 666444432 555555555
No 66
>PLN00162 transport protein sec23; Provisional
Probab=36.49 E-value=1e+02 Score=32.92 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=42.3
Q ss_pred CCCccccC---CCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccce
Q 025034 10 GAGRFTLP---PMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTAS 86 (259)
Q Consensus 10 ~~~~~~l~---p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsas 86 (259)
++-||.++ -..-.|=-.+|+||++.+.. + +..+|.+|..-+. .+-++-+.||+|.+..+.
T Consensus 108 ~TvEY~~p~~~~~~~~pp~fvFvID~s~~~~-~-------------l~~lk~sl~~~L~---~LP~~a~VGlITF~s~V~ 170 (761)
T PLN00162 108 TTVEYTLPPGSGGAPSPPVFVFVVDTCMIEE-E-------------LGALKSALLQAIA---LLPENALVGLITFGTHVH 170 (761)
T ss_pred eeEEEECCCCCCCCCCCcEEEEEEecchhHH-H-------------HHHHHHHHHHHHH---hCCCCCEEEEEEECCEEE
Confidence 34556665 11223557999999997643 1 4456666665553 477889999999999876
Q ss_pred eee
Q 025034 87 WLR 89 (259)
Q Consensus 87 Wl~ 89 (259)
...
T Consensus 171 ~~~ 173 (761)
T PLN00162 171 VHE 173 (761)
T ss_pred EEE
Confidence 653
No 67
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=1.4e+02 Score=32.01 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=51.3
Q ss_pred CCccccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeec
Q 025034 11 AGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRK 90 (259)
Q Consensus 11 ~~~~~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~ 90 (259)
+=||.|.|.+..|-=.||+||++-+.. .|+.+|.++.+++- .+=++-.-+|++.+..+.-+-.
T Consensus 109 tvEy~l~~~~~~ppvf~fVvDtc~~ee--------------eL~~LkssL~~~l~---lLP~~alvGlItfg~~v~v~el 171 (745)
T KOG1986|consen 109 TVEYTLSPGRVSPPVFVFVVDTCMDEE--------------ELQALKSSLKQSLS---LLPENALVGLITFGTMVQVHEL 171 (745)
T ss_pred eeEEecCCCCCCCceEEEEEeeccChH--------------HHHHHHHHHHHHHh---hCCCcceEEEEEecceEEEEEc
Confidence 356999988888888899999998643 38889999988875 5667788889998877666544
Q ss_pred ccC
Q 025034 91 EFS 93 (259)
Q Consensus 91 ~FT 93 (259)
+|.
T Consensus 172 ~~~ 174 (745)
T KOG1986|consen 172 GFE 174 (745)
T ss_pred CCC
Confidence 443
No 68
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=32.80 E-value=73 Score=28.26 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=23.2
Q ss_pred ceEEEEEeecCCCCCCCChHHHHHHHHHhhh
Q 025034 161 LFTMDVLYLHDKPGPDNCPQKVYDALVDALE 191 (259)
Q Consensus 161 ~FflDVvYlHd~~~~dnc~q~Vyd~L~~~ld 191 (259)
.-++|++++|++........+++++|.++.+
T Consensus 108 ~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~ 138 (285)
T cd06660 108 TDYIDLYLLHWPDPDTPDIEETLRALEELVK 138 (285)
T ss_pred CCceeEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 3469999999976655447899999976543
No 69
>PRK14635 hypothetical protein; Provisional
Probab=31.15 E-value=46 Score=28.71 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhhhcCCCceeEEEcC-cchHHHHHH--HHHhhccCC
Q 025034 179 PQKVYDALVDALEHVSENEGYIFESG-QGLARILFR--QMCVLLSHP 222 (259)
Q Consensus 179 ~q~Vyd~L~~~ld~~s~~~sYi~Evg-~~~a~~L~~--~ma~LLaHP 222 (259)
|+++-..+-+.||...-..+|.+||| -|+-|.|.+ ++-...+++
T Consensus 55 C~~vSr~is~~LD~~d~~~~Y~LEVSSPGldRpL~~~~~~~r~~G~~ 101 (162)
T PRK14635 55 CEQVSRKLKEELERISPDLDFTLKVSSAGAERKLRLPEDLDRFRGIP 101 (162)
T ss_pred HHHHHHHHHHHhCCCCCCCCeEEEEcCCCCCCcCCCHHHHHHhCCCE
Confidence 78888888888885333469999988 777444432 444444444
No 70
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=30.59 E-value=4e+02 Score=23.93 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=29.7
Q ss_pred CCCChhHHHHHHHHHhhhhc--CCCceEEEEEEeecCCCCccc
Q 025034 113 GQADLTHLFKLASHEAKKSR--AQNRILRVILIYCRSSVRPQH 153 (259)
Q Consensus 113 ~~~DL~~LF~~i~~e~~~~~--~~~~vvRVILiY~RS~~~P~~ 153 (259)
..-+++.||+.|+..+..+. .+.+-.++-..|+-......+
T Consensus 155 tg~gI~elf~~L~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~ 197 (247)
T cd04143 155 KNSNLDEMFRALFSLAKLPNEMSPSLHRKISVQYGDALHKKSR 197 (247)
T ss_pred CCCCHHHHHHHHHHHhccccccCccccceeeeeeccccccccc
Confidence 56799999999998876664 445556777777776655554
No 71
>PRK14633 hypothetical protein; Provisional
Probab=29.18 E-value=49 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHhhhhcCC-CceeEEEcC-cchH
Q 025034 178 CPQKVYDALVDALEHVSE-NEGYIFESG-QGLA 208 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~a 208 (259)
-|+++-.+|.+.||...- ...|.+||| -|+-
T Consensus 48 dC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGld 80 (150)
T PRK14633 48 DCQIVSKEISAVFDVEDPVSGKYILEVSSPGMN 80 (150)
T ss_pred HHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 378899999888885211 468999998 6663
No 72
>PRK14645 hypothetical protein; Provisional
Probab=28.34 E-value=51 Score=28.36 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhhcCC-CceeEEEcC-cch
Q 025034 179 PQKVYDALVDALEHVSE-NEGYIFESG-QGL 207 (259)
Q Consensus 179 ~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~ 207 (259)
|..+-..+-+.||...- ..+|.+||+ -|+
T Consensus 57 C~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 87 (154)
T PRK14645 57 LERASRALEAELDRLDPIEGEYRLEVESPGP 87 (154)
T ss_pred HHHHHHHHHHHhcccccCCCceEEEEeCCCC
Confidence 68888888888875210 479999988 666
No 73
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=28.16 E-value=1.3e+02 Score=32.74 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=51.1
Q ss_pred CccccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecc
Q 025034 12 GRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKE 91 (259)
Q Consensus 12 ~~~~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~ 91 (259)
++|.++-. .|-.+||-||++.+... +|. +..+-++|+.-+-.+.-.+++.+-|++++.++...+.
T Consensus 267 ~~Y~~~~p--~P~~yvFlIDVS~~a~~-------~g~----~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk-- 331 (861)
T COG5028 267 KEYSLRQP--PPPVYVFLIDVSFEAIK-------NGL----VKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFK-- 331 (861)
T ss_pred cceeeccC--CCCEEEEEEEeehHhhh-------cch----HHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEe--
Confidence 45777765 48999999999998762 233 3344455555555666789999999999999988885
Q ss_pred cCCCH
Q 025034 92 FSSDI 96 (259)
Q Consensus 92 FTsd~ 96 (259)
...|.
T Consensus 332 ~s~d~ 336 (861)
T COG5028 332 LSPDL 336 (861)
T ss_pred cCCCC
Confidence 44555
No 74
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=27.76 E-value=4.3e+02 Score=23.35 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=44.9
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHH-hhhcCCCCccEEEEEecccceeeecccC-CCHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVN-SKLSINPDHRFAFVTLAKTASWLRKEFS-SDIEST 99 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~-~K~~i~p~HeFAl~~L~dsasWl~~~FT-sd~~~i 99 (259)
-|=+||+|+|+|.-|...- + .+..|++ .+.....-+=|.|. +...++...+. .|+...
T Consensus 56 ~~~~lvvl~DvSGSM~~~s----------------~-~~l~~~~~l~~~~~~~~~f~F~---~~l~~vT~~l~~~~~~~~ 115 (222)
T PF05762_consen 56 KPRRLVVLCDVSGSMAGYS----------------E-FMLAFLYALQRQFRRVRVFVFS---TRLTEVTPLLRRRDPEEA 115 (222)
T ss_pred CCccEEEEEeCCCChHHHH----------------H-HHHHHHHHHHHhCCCEEEEEEe---eehhhhhhhhccCCHHHH
Confidence 3448999999999776311 1 1122333 22222333444444 44444442332 366666
Q ss_pred HHHhhccccccccCCCChhHHHHHHHHHh
Q 025034 100 LTAVRGISATSACGQADLTHLFKLASHEA 128 (259)
Q Consensus 100 ~~aL~~L~~~~~~~~~DL~~LF~~i~~e~ 128 (259)
+..+.....+ -.+.=|++.-|+...+..
T Consensus 116 l~~~~~~~~~-~~GgTdi~~aL~~~~~~~ 143 (222)
T PF05762_consen 116 LARLSALVQS-FGGGTDIGQALREFLRQY 143 (222)
T ss_pred HHHHHhhccC-CCCccHHHHHHHHHHHHh
Confidence 6655433222 335668888877776543
No 75
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=26.56 E-value=59 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHhhhhcCC-CceeEEEcC-cchH
Q 025034 178 CPQKVYDALVDALEHVSE-NEGYIFESG-QGLA 208 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~a 208 (259)
-|.++-..+.+.||...- ..+|.+||| -|+-
T Consensus 52 dc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~ 84 (154)
T PRK00092 52 DCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD 84 (154)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence 378888888888885211 368999988 6764
No 76
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=25.71 E-value=7.1e+02 Score=25.18 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=115.7
Q ss_pred ccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc---------
Q 025034 15 TLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA--------- 85 (259)
Q Consensus 15 ~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa--------- 85 (259)
+.++....|=|+-|..|++.-|. .-|+-+|+........=..|.++-+++|..+-|-.
T Consensus 91 ~~~~a~~yPvDLYyLMDlS~SM~-------------ddl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p 157 (423)
T smart00187 91 TVRQAEDYPVDLYYLMDLSYSMK-------------DDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRP 157 (423)
T ss_pred EEEecccCccceEEEEeCCccHH-------------HHHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCH
Confidence 33444556889999999998766 34778888888888888899999999998876521
Q ss_pred ----------------e----eeecccCCCHHHHHHHhhccccccccCCCChhHHHHHHHHHhhhhcCCCce--EEEEEE
Q 025034 86 ----------------S----WLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRI--LRVILI 143 (259)
Q Consensus 86 ----------------s----Wl~~~FTsd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~v--vRVILi 143 (259)
. =+. .+|+|.+...+++.....++--+. -+.-|+.|.|-+-=.+..+|. .|=|||
T Consensus 158 ~~l~~PC~~~~~~c~p~f~f~~~L-~LT~~~~~F~~~V~~~~iSgN~D~--PEgG~DAimQaaVC~~~IGWR~~a~rllv 234 (423)
T smart00187 158 EKLENPCPNYNLTCEPPYGFKHVL-SLTDDTDEFNEEVKKQRISGNLDA--PEGGFDAIMQAAVCTEQIGWREDARRLLV 234 (423)
T ss_pred HHhcCCCcCCCCCcCCCcceeeec-cCCCCHHHHHHHHhhceeecCCcC--CcccHHHHHHHHhhccccccCCCceEEEE
Confidence 1 122 789999999999998776552211 123455565554333333443 566677
Q ss_pred eecCCCCccccC-----C---CCCCceEEEE--EeecCCCCCCCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHH
Q 025034 144 YCRSSVRPQHQW-----P---VNQKLFTMDV--LYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFR 213 (259)
Q Consensus 144 Y~RS~~~P~~~~-----~---~~~p~FflDV--vYlHd~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~ 213 (259)
|.-.. ..++-. . -++.-.+||- .|-+...-+==....|.+.|.+ +.-.-||=|.... ..+|+
T Consensus 235 ~~TDa-~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e------~nI~~IFAVT~~~-~~~Y~ 306 (423)
T smart00187 235 FSTDA-GFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAE------NNINPIFAVTKKQ-VSLYK 306 (423)
T ss_pred EEcCC-CccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHh------cCceEEEEEcccc-hhHHH
Confidence 76554 222211 0 1445666762 4655332221135555555533 4678999998777 58999
Q ss_pred HHHhhc
Q 025034 214 QMCVLL 219 (259)
Q Consensus 214 ~ma~LL 219 (259)
.++.|+
T Consensus 307 ~Ls~li 312 (423)
T smart00187 307 ELSALI 312 (423)
T ss_pred HHHHhc
Confidence 998887
No 77
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=24.53 E-value=3.8e+02 Score=21.62 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=32.8
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeee
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLR 89 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~ 89 (259)
--+|++-.+++..... .|..++..+ ..=++.++.++++. |.++.++. +-.-+.
T Consensus 41 eRdi~v~~i~~~~~~~-------~~~~~~~~~------~~~lr~~l~~~~~~-f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 41 ERDIVVIVITGDGARS-------PGKPLSPED------IQALRKRLRIPPGG-FTVVLIGKDGGVKLR 94 (118)
T ss_pred cCceEEEEEeCCcccc-------ccCcCCHHH------HHHHHHHhCCCCCc-eEEEEEeCCCcEEEe
Confidence 4567777777765442 233444433 33477888888665 99999994 444443
No 78
>PTZ00395 Sec24-related protein; Provisional
Probab=24.15 E-value=1.1e+02 Score=35.45 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=40.6
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
|=..+||||+|..+- .+|-..+..+.||.+|... -+++.+.||++...+....
T Consensus 952 PP~YvFLIDVS~~AV-------kSGLl~tacesIK~sLDsL------~dpRTRVGIITFDSsLHFY 1004 (1560)
T PTZ00395 952 PPYFVFVVECSYNAI-------YNNITYTILEGIRYAVQNV------KCPQTKIAIITFNSSIYFY 1004 (1560)
T ss_pred CCEEEEEEECCHHHH-------hhChHHHHHHHHHHHHhcC------CCCCcEEEEEEecCcEEEE
Confidence 457999999999765 2355567788888888662 2789999999998876555
No 79
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.05 E-value=4.5e+02 Score=26.08 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecc-cCCCHHHHHHHhhccccc-----cccCCCChhHHHHHHHHH
Q 025034 54 DAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKE-FSSDIESTLTAVRGISAT-----SACGQADLTHLFKLASHE 127 (259)
Q Consensus 54 ~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~-FTsd~~~i~~aL~~L~~~-----~~~~~~DL~~LF~~i~~e 127 (259)
+.++++|+.|- ...|||.++.-.+...|+- | +..++.++..+|+.+... +..+.-|++.|++.+..
T Consensus 303 e~i~~~L~~f~------~~~gR~E~v~~~~gv~iID-DS~AhNp~s~~aal~~~~~iilI~GG~~k~~d~~~l~~~l~~- 374 (488)
T PRK03369 303 GAIADALASFR------VGRHRAEVVAVADGITYVD-DSKATNPHAARASILAYPRVVWIAGGLLKGASVDALVAEMAS- 374 (488)
T ss_pred HHHHHHHHhCC------CCCCccEEEEcCCCEEEEE-CCCCCCHHHHHHHHHhCCCeEEEecCcCCCCCHHHHHHHHhh-
Confidence 34455555442 3478999887667788885 5 899999999999977421 23356688888887742
Q ss_pred hhhhcCCCceEEEEEEeecCCCCc
Q 025034 128 AKKSRAQNRILRVILIYCRSSVRP 151 (259)
Q Consensus 128 ~~~~~~~~~vvRVILiY~RS~~~P 151 (259)
.++.++++|.....+
T Consensus 375 ---------~~~~vi~iG~~~~~i 389 (488)
T PRK03369 375 ---------RLVGAVLIGRDRAVV 389 (488)
T ss_pred ---------heeEEEEEcCCHHHH
Confidence 244455577765333
No 80
>PRK14638 hypothetical protein; Provisional
Probab=23.36 E-value=74 Score=27.16 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHhhhhcCC-CceeEEEcC-cch
Q 025034 178 CPQKVYDALVDALEHVSE-NEGYIFESG-QGL 207 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~ 207 (259)
-|+.|-..|.+.||...- ..+|.+||+ -|+
T Consensus 54 dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (150)
T PRK14638 54 DCELFSREIERFLDREDLIEHSYTLEVSSPGL 85 (150)
T ss_pred HHHHHHHHHHHHhccccccCCceEEEEeCCCC
Confidence 378899999888885211 469999988 666
No 81
>KOG2327 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) [Replication, recombination and repair]
Probab=21.79 E-value=1.4e+02 Score=31.29 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=40.9
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCc
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDH 74 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~H 74 (259)
.-|-|.||||+++- |+..+.+.-..++|.|+=..|..---.+..-|++|
T Consensus 17 ~~~~ilfvi~~~~s----~~~~~~~e~~lspl~~~L~~~~~l~~~~vitn~~~ 65 (602)
T KOG2327|consen 17 GKEAILFVIDVNPS----MKAEEPDEFKLSPLKMILDCIDRLCIQLVITNPID 65 (602)
T ss_pred cccceEEEEecCHH----hhccCcccchhhhHHHHHHHHHHHHhheeecCCCC
Confidence 46889999999997 44555567788999999999998888888888887
No 82
>PRK14641 hypothetical protein; Provisional
Probab=21.30 E-value=81 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHhhhhcCC-----CceeEEEcC-cchHHHHH--HHHHhhccCCC
Q 025034 178 CPQKVYDALVDALEHVSE-----NEGYIFESG-QGLARILF--RQMCVLLSHPQ 223 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-----~~sYi~Evg-~~~a~~L~--~~ma~LLaHPL 223 (259)
-|.++-..|.+.||.... +..|.+||+ -|+-|-|. +++....+|..
T Consensus 54 dC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~V 107 (173)
T PRK14641 54 QCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEPIILPRQYGRHVGRLL 107 (173)
T ss_pred HHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCEE
Confidence 378888888888885211 269999988 66644433 25555555543
No 83
>PRK14647 hypothetical protein; Provisional
Probab=21.26 E-value=89 Score=26.80 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHhhhhcCC-CceeEEEcC-cchHHHHHH--HHHhhccCC
Q 025034 178 CPQKVYDALVDALEHVSE-NEGYIFESG-QGLARILFR--QMCVLLSHP 222 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~a~~L~~--~ma~LLaHP 222 (259)
-|+.+-..+.+.||...- ...|.+||| -|+-|.|.+ ++-...+++
T Consensus 53 dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~~~~~f~r~~G~~ 101 (159)
T PRK14647 53 DCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLKKEADYERYAGRL 101 (159)
T ss_pred HHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCCCHHHHHHhCCcE
Confidence 368888888888885211 468999988 676444432 444444443
No 84
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=20.96 E-value=1.5e+02 Score=28.84 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.5
Q ss_pred EEEEEeecCCCCCCCChHHHHHHHHHhhhh
Q 025034 163 TMDVLYLHDKPGPDNCPQKVYDALVDALEH 192 (259)
Q Consensus 163 flDVvYlHd~~~~dnc~q~Vyd~L~~~ld~ 192 (259)
++|++|+|. +....+-+++.++|-+..+.
T Consensus 128 ~IDl~q~Hr-~D~~~piee~m~aL~~lve~ 156 (336)
T KOG1575|consen 128 YIDLLQVHR-WDPMVPIEETMRALTDLVEQ 156 (336)
T ss_pred eeEEEEEcc-cCCCCCHHHHHHHHHHHHhc
Confidence 699999998 56677899999999887763
No 85
>PRK14640 hypothetical protein; Provisional
Probab=20.85 E-value=90 Score=26.61 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHhhhhcCC-CceeEEEcC-cchHHHHHH--HHHhhccCC
Q 025034 178 CPQKVYDALVDALEHVSE-NEGYIFESG-QGLARILFR--QMCVLLSHP 222 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~a~~L~~--~ma~LLaHP 222 (259)
-|+.+-.+|.++||...- ...|.+||+ -|+-|.|.+ ++-..++++
T Consensus 51 dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~r~~G~~ 99 (152)
T PRK14640 51 NCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKYVGQE 99 (152)
T ss_pred HHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCe
Confidence 378888899888885211 469999988 676444433 444444443
No 86
>PRK14636 hypothetical protein; Provisional
Probab=20.68 E-value=90 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHhhhhcCC-CceeEEEcC-cchHH
Q 025034 178 CPQKVYDALVDALEHVSE-NEGYIFESG-QGLAR 209 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~-~~sYi~Evg-~~~a~ 209 (259)
-|+.+-..|.+.||...- ..+|.+||| -|+-|
T Consensus 52 DC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGldR 85 (176)
T PRK14636 52 DCAALSRRLSDVFDELDPIEDAYRLEVSSPGIDR 85 (176)
T ss_pred HHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 368888888888875211 578999988 67643
No 87
>PRK14637 hypothetical protein; Provisional
Probab=20.33 E-value=88 Score=26.80 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHhhhhcCCCceeEEEcC-cchH
Q 025034 178 CPQKVYDALVDALEHVSENEGYIFESG-QGLA 208 (259)
Q Consensus 178 c~q~Vyd~L~~~ld~~s~~~sYi~Evg-~~~a 208 (259)
-|+++-..+.+.||..-....|.+||+ -|+-
T Consensus 53 dC~~vSr~Is~~LD~~~~~~~y~LEVSSPGld 84 (151)
T PRK14637 53 DCARVHRILVPRLEALGGVRDVFLEVSSPGIE 84 (151)
T ss_pred HHHHHHHHHHHHhcccccccCcEEEEeCCCCC
Confidence 378888888777875222368999988 6663
No 88
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.12 E-value=1.5e+02 Score=33.37 Aligned_cols=58 Identities=28% Similarity=0.487 Sum_probs=37.1
Q ss_pred CCCCCceEEEEEeecCCCCCCC--ChHHHHHHHH-HhhhhcCCCcee---EEEcC-cchHHHHHHHHH
Q 025034 156 PVNQKLFTMDVLYLHDKPGPDN--CPQKVYDALV-DALEHVSENEGY---IFESG-QGLARILFRQMC 216 (259)
Q Consensus 156 ~~~~p~FflDVvYlHd~~~~dn--c~q~Vyd~L~-~~ld~~s~~~sY---i~Evg-~~~a~~L~~~ma 216 (259)
+...+-|+||..|+-..+++.| |-+.||.-|. +.|++ ..+|| ||==| +|+ -|-|.-|+
T Consensus 43 ~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~--AfEGYN~ClFAYGQTGS-GKSYTMMG 107 (1221)
T KOG0245|consen 43 SKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH--AFEGYNVCLFAYGQTGS-GKSYTMMG 107 (1221)
T ss_pred cccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH--HhcccceEEEEeccCCC-Ccceeeec
Confidence 3445679999999976666654 5778998663 35666 45666 66555 444 25555444
Done!