Query 025034
Match_columns 259
No_of_seqs 58 out of 60
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_W RPN10, 26S proteasome r 98.8 1.2E-07 4E-12 86.2 14.2 176 23-215 3-185 (268)
2 2x5n_A SPRPN10, 26S proteasome 98.7 2.8E-07 9.4E-12 78.8 13.6 167 23-207 2-174 (192)
3 3ibs_A Conserved hypothetical 98.0 0.00011 3.9E-09 60.9 12.4 93 22-126 10-103 (218)
4 1shu_X Anthrax toxin receptor 97.9 4.6E-05 1.6E-09 61.4 8.7 109 23-148 6-116 (182)
5 2x31_A Magnesium-chelatase 60 97.8 0.00014 4.9E-09 59.3 10.5 109 22-149 4-115 (189)
6 3n2n_F Anthrax toxin receptor 97.8 0.00027 9.1E-09 57.0 11.8 107 22-144 6-113 (185)
7 1jey_B KU80; double-strand DNA 97.6 0.00059 2E-08 66.7 13.7 115 23-145 7-136 (565)
8 1jey_A KU70; double-strand DNA 97.6 0.00058 2E-08 67.6 12.7 118 22-146 34-171 (609)
9 1atz_A VON willebrand factor; 97.6 0.0013 4.4E-08 53.8 12.7 90 23-128 5-97 (189)
10 1ijb_A VON willebrand factor; 97.5 0.0021 7.2E-08 53.5 13.1 111 23-148 13-128 (202)
11 1q0p_A Complement factor B; VO 97.5 0.0024 8.2E-08 52.7 13.1 116 22-149 14-141 (223)
12 2xgg_A Microneme protein 2; A/ 97.3 0.0047 1.6E-07 50.3 12.8 89 23-127 17-110 (178)
13 4fx5_A VON willebrand factor t 97.2 0.0033 1.1E-07 60.3 12.4 104 21-144 75-186 (464)
14 1v7p_C Integrin alpha-2; snake 97.1 0.0082 2.8E-07 49.5 12.8 176 23-219 6-195 (200)
15 4hqf_A Thrombospondin-related 97.1 0.005 1.7E-07 53.9 11.6 114 23-148 21-141 (281)
16 2odp_A Complement C2; C3/C5 co 97.1 0.0044 1.5E-07 58.2 11.6 93 22-127 8-106 (509)
17 1rrk_A Complement factor B; BB 97.0 0.0052 1.8E-07 57.3 11.8 92 25-128 3-99 (497)
18 1mf7_A Integrin alpha M; cell 96.9 0.0037 1.3E-07 51.1 8.8 109 23-148 5-119 (194)
19 2iue_A Pactolus I-domain; memb 96.9 0.041 1.4E-06 48.3 15.9 175 23-221 3-188 (212)
20 3hrz_D Complement factor B; se 96.9 0.01 3.5E-07 58.1 13.4 115 22-149 242-369 (741)
21 2b2x_A Integrin alpha-1; compu 96.8 0.018 6.2E-07 48.3 12.4 187 14-220 11-212 (223)
22 3zqk_A VON willebrand factor; 96.7 0.0079 2.7E-07 49.9 9.3 74 22-109 20-96 (199)
23 4hqo_A Sporozoite surface prot 96.6 0.022 7.6E-07 49.6 11.6 112 23-148 18-138 (266)
24 3rag_A Uncharacterized protein 96.4 0.0061 2.1E-07 54.7 7.2 74 22-110 133-210 (242)
25 1pt6_A Integrin alpha-1; cell 96.4 0.043 1.5E-06 45.6 12.0 111 23-149 7-123 (213)
26 1mjn_A Integrin alpha-L; rossm 96.4 0.031 1.1E-06 45.4 10.6 108 24-149 3-117 (179)
27 3fcs_B Integrin beta-3; beta p 95.8 0.16 5.4E-06 51.5 14.4 179 19-221 107-327 (690)
28 2ww8_A RRGA, cell WALL surface 95.2 0.16 5.6E-06 52.7 12.6 57 22-85 223-279 (893)
29 1n3y_A Integrin alpha-X; alpha 95.2 0.041 1.4E-06 44.6 6.6 85 24-125 10-96 (198)
30 3t3p_B Integrin beta-3; integr 94.5 1.3 4.3E-05 43.3 16.0 179 17-220 105-326 (472)
31 3k6s_B Integrin beta-2; cell r 93.8 0.31 1.1E-05 49.3 10.6 181 17-222 98-318 (687)
32 3vi3_B Integrin beta-1; beta p 92.2 8.9 0.0003 37.2 18.2 179 17-220 116-333 (454)
33 3v4v_B Integrin beta-7; cell a 91.8 4.2 0.00014 39.9 15.0 181 16-221 125-346 (503)
34 3k6s_A Integrin alpha-X; cell 90.1 0.84 2.9E-05 48.2 8.9 70 23-108 130-202 (1095)
35 1m2o_A SEC23, protein transpor 79.5 6.1 0.00021 40.1 8.9 66 11-95 109-174 (768)
36 1yvr_A RO autoantigen, 60-kDa 77.4 9 0.00031 36.8 9.0 86 22-124 367-454 (538)
37 2nut_A Protein transport prote 75.2 8 0.00027 39.3 8.3 61 11-88 120-180 (769)
38 1pcx_A Protein transport prote 53.7 27 0.00092 35.7 7.3 53 22-88 186-241 (810)
39 2nvo_A RO sixty-related protei 51.5 62 0.0021 31.1 9.2 89 22-124 361-450 (535)
40 3eh1_A Protein transport prote 51.2 32 0.0011 35.0 7.3 61 13-88 152-213 (751)
41 1m2v_B SEC24, protein transpor 43.8 37 0.0013 35.4 6.6 53 22-88 302-357 (926)
42 2pd2_A Hypothetical protein ST 35.0 1.1E+02 0.0038 22.2 6.5 56 25-103 2-57 (108)
43 3eh2_A Protein transport prote 32.7 92 0.0031 31.6 7.3 61 11-88 161-231 (766)
44 3efo_B SEC24 related gene fami 30.0 1.1E+02 0.0037 31.1 7.3 52 22-88 176-235 (770)
45 2l82_A Designed protein OR32; 21.1 45 0.0015 27.1 2.0 10 138-147 27-36 (162)
No 1
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.2e-07 Score=86.20 Aligned_cols=176 Identities=14% Similarity=0.288 Sum_probs=128.6
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
-|=+|||||+|.-|... .-..|||+..|.|+..|+..|...+|..+.+|++...++.++..++|+|...+..+
T Consensus 3 lEAtViviD~S~SM~~~-------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~a 75 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNG-------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAG 75 (268)
T ss_dssp CEEEEEEECCSSTTSST-------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHH
T ss_pred ceeEEEEEECCHHHhCC-------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHH
Confidence 47799999999987621 13348999999999999999999999999999999877665544999999999999
Q ss_pred hhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCCccc-cCC------CCCCceEEEEEeecCCCCC
Q 025034 103 VRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVRPQH-QWP------VNQKLFTMDVLYLHDKPGP 175 (259)
Q Consensus 103 L~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~P~~-~~~------~~~p~FflDVvYlHd~~~~ 175 (259)
|+.|.+.+ .-+|..=.+.++..++........-|+|++-+=... .. ... .++..-++|||=+=+..
T Consensus 76 L~~l~~~G---~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~--~~~~~l~~lak~lkk~gI~v~vIgFG~~~-- 148 (268)
T 4b4t_W 76 LHDTQIEG---KLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPIS--DSRDELIRLAKTLKKNNVAVDIINFGEIE-- 148 (268)
T ss_dssp HTTCCCCS---CCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCS--SCHHHHHHHHHHHHHHTEEEEEEEESSCC--
T ss_pred hhhcCcCC---CCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCC--CCHHHHHHHHHHHHHcCCEEEEEEeCCCc--
Confidence 99998654 457777667777666666666778888888653321 11 011 23456789999886532
Q ss_pred CCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHHHH
Q 025034 176 DNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFRQM 215 (259)
Q Consensus 176 dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~~m 215 (259)
.| ++...+|.++.+......||+..|--|. ..|.+.+
T Consensus 149 ~n--~~kLe~l~~~~Ng~~~~~s~~v~v~~g~-~~lsd~l 185 (268)
T 4b4t_W 149 QN--TELLDEFIAAVNNPQEETSHLLTVTPGP-RLLYENI 185 (268)
T ss_dssp SS--CCHHHHHHHHHCSSTTTSCEEEEECCCS-SCHHHHH
T ss_pred cc--hHHHHHHHHHhcCCCCCceeEEEeCCCC-ccHHHHH
Confidence 23 3457777777765334689999997654 2466643
No 2
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.69 E-value=2.8e-07 Score=78.84 Aligned_cols=167 Identities=14% Similarity=0.211 Sum_probs=110.2
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeeecccCCCHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLRKEFSSDIESTLT 101 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~~~FTsd~~~i~~ 101 (259)
.|.|+||||+|.-|... .-..+||+..|+++..|+..+..-+|.-+.||+++++ ++.++. ++|+|.+.+..
T Consensus 2 ~e~lvlvlD~S~SM~~~-------D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~-plT~d~~~i~~ 73 (192)
T 2x5n_A 2 LEATMILIDNSEWMING-------DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLS-TLTRDYGKFLS 73 (192)
T ss_dssp CEEEEEEECCSGGGGCT-------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEE-EEESCHHHHHH
T ss_pred ceEEEEEEECCHhhccC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEec-CCCCCHHHHHH
Confidence 58899999999987731 1235899999999999999999899999999999998 599998 99999999999
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCC-cc-ccC---CCCCCceEEEEEeecCCCCCC
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVR-PQ-HQW---PVNQKLFTMDVLYLHDKPGPD 176 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~-P~-~~~---~~~~p~FflDVvYlHd~~~~d 176 (259)
+|+.+...+ .-++..=.+.+....+........=|+|++.+=...- |. ... .+++....+++|=+=... .
T Consensus 74 ~L~~l~~~g---~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~--~ 148 (192)
T 2x5n_A 74 AMHDLPVRG---NAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--N 148 (192)
T ss_dssp HHTTCCCCS---CCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC----
T ss_pred HHHcCCCCC---CchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCC--c
Confidence 999988654 4566666666655444433233455877776432211 11 000 123445667777664332 2
Q ss_pred CChHHHHHHHHHhhhhcCCCceeEEEcCcch
Q 025034 177 NCPQKVYDALVDALEHVSENEGYIFESGQGL 207 (259)
Q Consensus 177 nc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~ 207 (259)
|. + -..|++..+. ++.|.++.+.-+.
T Consensus 149 ~~--~-l~~la~~~n~--~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 149 ES--A-LQHFIDAANS--SDSCHLVSIPPSP 174 (192)
T ss_dssp -C--H-HHHHHHHHCS--TTCCEEEEECCCS
T ss_pred cH--H-HHHHHHhccC--CCceEEEEecCcc
Confidence 22 2 4455555542 2444445655443
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=0.00011 Score=60.92 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLT 101 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~ 101 (259)
.+-+|+||||.|.-|... +...+||+.+|+++..|+..- +..+++|++.++++.|+. ++|.|.+.+..
T Consensus 10 ~~~~iv~vlD~SgSM~~~-------d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~~~~~~-~~~~~~~~~~~ 77 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQ-------DVQPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGDAFTQL-PITSDYISAKM 77 (218)
T ss_dssp CCCEEEEEEECSGGGGCC-------SSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSSEEEEE-EEESCHHHHHH
T ss_pred CCCcEEEEEECCcCcccc-------cCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCCceEeC-CCCCCHHHHHH
Confidence 567899999999987731 123589999999999999763 378999999999999998 99999999999
Q ss_pred Hhhcccccc-ccCCCChhHHHHHHHH
Q 025034 102 AVRGISATS-ACGQADLTHLFKLASH 126 (259)
Q Consensus 102 aL~~L~~~~-~~~~~DL~~LF~~i~~ 126 (259)
.|..|.... ..+.-++..-++.+..
T Consensus 78 ~l~~l~~~~~~~g~T~l~~al~~a~~ 103 (218)
T 3ibs_A 78 FLESISPSLISKQGTAIGEAINLATR 103 (218)
T ss_dssp HHHTCCGGGCCSCSCCHHHHHHHHHT
T ss_pred HHHhcCcccCCCCCCcHHHHHHHHHH
Confidence 999998632 2244456555554443
No 4
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.90 E-value=4.6e-05 Score=61.39 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=77.2
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
|=+|+|+||.|.-|... ...+++.+|+++..|+ +++.++++++.++++.++. ++|+|.+.+..+
T Consensus 6 ~~dvv~vlD~SgSM~~~---------~~~~~~~~~~~~~~~~------~~~~~v~lv~f~~~~~~~~-~~~~~~~~~~~~ 69 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANN---------WIEIYNFVQQLAERFV------SPEMRLSFIVFSSQATIIL-PLTGDRGKISKG 69 (182)
T ss_dssp CEEEEEEEECSGGGGGG---------HHHHHHHHHHHHHHCC------CTTEEEEEEEESSSEEEEE-EEECCHHHHHHH
T ss_pred ceeEEEEEECCCCcccC---------HHHHHHHHHHHHHHhc------CCCceEEEEEeCCCceEEE-CCCCCHHHHHHH
Confidence 56899999999988732 2347888998888884 4789999999999999998 999999999999
Q ss_pred hhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe--ecCC
Q 025034 103 VRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIY--CRSS 148 (259)
Q Consensus 103 L~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY--~RS~ 148 (259)
|+.|......+.-++..-++.+.+....... +..-|+|++. |+++
T Consensus 70 l~~l~~~~~~g~T~~~~al~~a~~~l~~~~~-~~~~~~iiliTDG~~~ 116 (182)
T 1shu_X 70 LEDLKRVSPVGETYIHEGLKLANEQIQKAGG-LKTSSIIIALTDGKLD 116 (182)
T ss_dssp HHHHHTCCCCSCCCHHHHHHHHHHHHHHHTG-GGSCEEEEEEECCCCC
T ss_pred HHhcccCCCCCCchHHHHHHHHHHHHHhccC-CCCCeEEEEECCCCcC
Confidence 9988743333445666666666554433321 1233455544 4554
No 5
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.82 E-value=0.00014 Score=59.28 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=77.5
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecc-cceeeecccCCCHHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAK-TASWLRKEFSSDIESTL 100 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~d-sasWl~~~FTsd~~~i~ 100 (259)
.|-+|+||||.|.-|. + ++++.+|+++..|+..- ..+..+++++++++ .+.|+. ++|.|.+.+.
T Consensus 4 ~~~~vv~vlD~SgSM~------~------~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~-~~~~~~~~~~ 68 (189)
T 2x31_A 4 SDRVLIFAVDASGSAA------V------ARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLL-QPSRSLTQTK 68 (189)
T ss_dssp SCCEEEEEEECCTTSC------C--------CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCT-TTCSCHHHHH
T ss_pred CCeEEEEEEECCCCCC------c------hHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEec-CCCCCHHHHH
Confidence 5678999999999764 1 58999999999999642 47889999999996 788997 9999999999
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe--ecCCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIY--CRSSV 149 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY--~RS~~ 149 (259)
..|..|.+.+ .-++..=++.+.........+.. .|+|++. |+++.
T Consensus 69 ~~i~~l~~~g---~T~~~~al~~a~~~l~~~~~~~~-~~~ivliTDG~~~~ 115 (189)
T 2x31_A 69 RQLQGLPGGG---GTPLASGMEMAMVTAKQARSRGM-TPTIALLTDGRGNI 115 (189)
T ss_dssp HHHHHCCCCB---CCCCHHHHHHHHHHHHTCTTTCS-SEEEEECCBSCCSS
T ss_pred HHHhcCCCCC---CCCHHHHHHHHHHHHHhccCCCC-ceEEEEECCCCCCC
Confidence 9999998654 33555555555554443222222 3444444 45543
No 6
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.81 E-value=0.00027 Score=57.03 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=75.0
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLT 101 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~ 101 (259)
.|=+|+|+||.|.-|...+ ..+++.+|+++..| ++++-++++++.++.+.++. +||+|.+.+..
T Consensus 6 ~~~div~vlD~SgSM~~~~---------~~~~~~~~~~~~~~------~~~~~~v~lv~f~~~~~~~~-~l~~~~~~~~~ 69 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLHHW---------NEIYYFVEQLAHKF------ISPQLRMSFIVFSTRGTTLM-KLTEDREQIRQ 69 (185)
T ss_dssp SEEEEEEEEECSGGGGGGH---------HHHHHHHHHHHHHC------CCTTEEEEEEEESSSEEEEE-EEECCHHHHHH
T ss_pred CCeeEEEEEeCCCChhhhH---------HHHHHHHHHHHHHh------CCCCcEEEEEEEecCceEEe-ccCCCHHHHHH
Confidence 3668999999999886422 12456666666665 46789999999999999998 99999999999
Q ss_pred HhhccccccccCCCChhHHHHHHHHHhhhh-cCCCceEEEEEEe
Q 025034 102 AVRGISATSACGQADLTHLFKLASHEAKKS-RAQNRILRVILIY 144 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~-~~~~~vvRVILiY 144 (259)
+|+.|......+.-++..-++.+....... ......-|+|++.
T Consensus 70 ~i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iill 113 (185)
T 3n2n_F 70 GLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIAL 113 (185)
T ss_dssp HHHHHHTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEE
T ss_pred HHHHHhhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEE
Confidence 999988543334445666555555543222 2222356666665
No 7
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.65 E-value=0.00059 Score=66.67 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=77.0
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccce-------------eee
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTAS-------------WLR 89 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsas-------------Wl~ 89 (259)
-|.||||||+|..|... ..| ..+||+.+|+++..|+..|...++..+.||++++..++ ++.
T Consensus 7 ke~iv~~iDvS~SM~~~-----d~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl 80 (565)
T 1jey_B 7 KAAVVLCMDVGFTMSNS-----IPG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVH 80 (565)
T ss_dssp CEEEEEEEECCGGGGCC-----BTT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEE
T ss_pred ceEEEEEEECChHhccc-----CCC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEe
Confidence 38999999999987631 123 56999999999999999999999999999999996542 122
Q ss_pred cccCCCHHHHHHHhhc-cccccccCCCChhHHHHHHHHHhhhh-cCCCceEEEEEEee
Q 025034 90 KEFSSDIESTLTAVRG-ISATSACGQADLTHLFKLASHEAKKS-RAQNRILRVILIYC 145 (259)
Q Consensus 90 ~~FTsd~~~i~~aL~~-L~~~~~~~~~DL~~LF~~i~~e~~~~-~~~~~vvRVILiY~ 145 (259)
.+++..-..++..|.. |... .+..+|..-..++....+.. ....+.-|+|++..
T Consensus 81 ~~l~~~~~~~l~~l~~~l~~~--~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlT 136 (565)
T 1jey_B 81 RHLMLPDFDLLEDIESKIQPG--SQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFT 136 (565)
T ss_dssp EEEECCCHHHHHHHHTTCCCC--SSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEEC
T ss_pred ecCCCCCHHHHHHHHhhccCC--CccccHHHHHHHHHHHHHHHhhcccccccEEEEEe
Confidence 3555444456677776 6432 23456665555555544433 22234445555554
No 8
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.58 E-value=0.00058 Score=67.56 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccce---------eeeccc
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTAS---------WLRKEF 92 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsas---------Wl~~~F 92 (259)
..|.||||||+|..|..+ ..|...+||+.+|+++..|+..|..-++..+.||++++..++ ++..++
T Consensus 34 ~ke~ivf~IDvS~SM~~~-----d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L 108 (609)
T 1jey_A 34 GRDSLIFLVDASKAMFES-----QSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQEL 108 (609)
T ss_dssp CEEEEEEEEECSGGGGCC-----CSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEE
T ss_pred CceEEEEEEECCHHHcCC-----CCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecC
Confidence 458899999999987732 124567999999999999999999999999999999997663 444466
Q ss_pred C-CCHHHHHHHhhcccc----------ccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeec
Q 025034 93 S-SDIESTLTAVRGISA----------TSACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCR 146 (259)
Q Consensus 93 T-sd~~~i~~aL~~L~~----------~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~R 146 (259)
+ -+.+ .+..|+.+.. .+.....+|..-+.++....+.. ...+.-|+|++..-
T Consensus 109 ~~~~~~-~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~-~~k~~~k~IiL~TD 171 (609)
T 1jey_A 109 DNPGAK-RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDV-QFKMSHKRIMLFTN 171 (609)
T ss_dssp ECCCHH-HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTC-SSCEEEEEEEEEES
T ss_pred CCCCHH-HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhh-chhhcCCEEEEEcC
Confidence 5 3333 4444555432 12234567777766666555433 22333444444443
No 9
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.57 E-value=0.0013 Score=53.81 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=69.6
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-CCccEEEEEecccceeeeccc--CCCHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-PDHRFAFVTLAKTASWLRKEF--SSDIEST 99 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-p~HeFAl~~L~dsasWl~~~F--Tsd~~~i 99 (259)
+=+|+|+||.|.-|.. ++++.+|+++..|+.. +.+. .+.++|+++.++++.+.. +| ++|.+.+
T Consensus 5 ~~div~vlD~SgSm~~------------~~~~~~k~~~~~~~~~-l~~~~~~~rv~lv~f~~~~~~~~-~l~~~~~~~~~ 70 (189)
T 1atz_A 5 PLDVILLLDGSSSFPA------------SYFDEMKSFAKAFISK-ANIGPRLTQVSVLQYGSITTIDV-PWNVVPEKAHL 70 (189)
T ss_dssp CEEEEEEEECSSSSCH------------HHHHHHHHHHHHHHHH-SCBSTTSEEEEEEEESSSEEEEE-CTTCCCCHHHH
T ss_pred ceeEEEEEeCCCCCCh------------hhHHHHHHHHHHHHHh-cCcCCCCeEEEEEEECCcceEEE-ecCCCCCHHHH
Confidence 4589999999997762 5689999999999975 3443 348999999999999988 88 8999999
Q ss_pred HHHhhccccccccCCCChhHHHHHHHHHh
Q 025034 100 LTAVRGISATSACGQADLTHLFKLASHEA 128 (259)
Q Consensus 100 ~~aL~~L~~~~~~~~~DL~~LF~~i~~e~ 128 (259)
..+|..+...+ +.-++..=++.+.+..
T Consensus 71 ~~~i~~l~~~~--g~T~~~~aL~~a~~~l 97 (189)
T 1atz_A 71 LSLVDVMQREG--GPSQIGDALGFAVRYL 97 (189)
T ss_dssp HHHHHTCCCCC--CCCCHHHHHHHHHHHH
T ss_pred HHHHHhCcCCC--CcchHHHHHHHHHHHH
Confidence 99999998522 3346666555555443
No 10
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.48 E-value=0.0021 Score=53.53 Aligned_cols=111 Identities=11% Similarity=0.122 Sum_probs=76.1
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCC-CccEEEEEecccceeeecccC--CCHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINP-DHRFAFVTLAKTASWLRKEFS--SDIEST 99 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p-~HeFAl~~L~dsasWl~~~FT--sd~~~i 99 (259)
+=+|+|+||.|.-|.. ..++.+|+++..|+.. +.+.+ ..++|+++.++++.+.. +|+ +|.+++
T Consensus 13 ~~divfvlD~SgSm~~------------~~~~~~k~~~~~~v~~-l~~~~~~~rv~vv~fs~~~~~~~-~l~~~~~~~~~ 78 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSE------------AEFEVLKAFVVDMMER-LRVSQKWVRVAVVEYHDGSHAYI-GLKDRKRPSEL 78 (202)
T ss_dssp CEEEEEEEECBTTSCH------------HHHHHHHHHHHHHHHT-BCBSTTSEEEEEEEESSSEEEEE-CTTCCCCHHHH
T ss_pred cccEEEEEECCCCCCH------------HHHHHHHHHHHHHHHh-cccCCCceEEEEEEECCCceEEE-ecCCCCCHHHH
Confidence 6799999999997762 3478899999999983 33445 57999999999999887 888 789999
Q ss_pred HHHhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe--ecCC
Q 025034 100 LTAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIY--CRSS 148 (259)
Q Consensus 100 ~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY--~RS~ 148 (259)
.++|+.+...+. ..-++..=++.+..+.-.....+-.-|+|++. |+++
T Consensus 79 ~~~i~~l~~~gg-~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~ 128 (202)
T 1ijb_A 79 RRIASQVKYAGS-QVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEP 128 (202)
T ss_dssp HHHHHTCCCCCB-SCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCC
T ss_pred HHHHHhCcCCCC-CcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCC
Confidence 999999885331 12355554454443321111123355666654 4554
No 11
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.46 E-value=0.0024 Score=52.73 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=80.5
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeee---cccCCCHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLR---KEFSSDIES 98 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~---~~FTsd~~~ 98 (259)
.+=+|+|+||.|.-|.. ..++.+|+++..|+..=...++..++++++.++++.++. ..+|.|.+.
T Consensus 14 ~~~div~vlD~SgSM~~------------~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~ 81 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGA------------SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADW 81 (223)
T ss_dssp -CEEEEEEEECSTTTCH------------HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHH
T ss_pred CceeEEEEEeCCCCCch------------HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHH
Confidence 57799999999998763 238999999999998644556678999999999887775 245668899
Q ss_pred HHHHhhcccccc--ccCCCChhHHHHHHHHHhhhhc--CC---CceEEEEEEe--ecCCC
Q 025034 99 TLTAVRGISATS--ACGQADLTHLFKLASHEAKKSR--AQ---NRILRVILIY--CRSSV 149 (259)
Q Consensus 99 i~~aL~~L~~~~--~~~~~DL~~LF~~i~~e~~~~~--~~---~~vvRVILiY--~RS~~ 149 (259)
+.++|..|.... ..+.-++..=++.+........ .+ +..-|+|++. |.++.
T Consensus 82 ~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 141 (223)
T 1q0p_A 82 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 141 (223)
T ss_dssp HHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCS
T ss_pred HHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCC
Confidence 999999998642 2345566666666655543221 11 2455655554 45553
No 12
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.30 E-value=0.0047 Score=50.25 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=68.2
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-CCccEEEEEecccceeeecccCC----CHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-PDHRFAFVTLAKTASWLRKEFSS----DIE 97 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-p~HeFAl~~L~dsasWl~~~FTs----d~~ 97 (259)
+=+|+|+||.|.-|.. .+++.+|+++..|+.. +.+. ...++|+++.++++.+.. +|+. |.+
T Consensus 17 ~~divfvlD~SgSm~~------------~~~~~~k~~~~~~i~~-l~~~~~~~rv~vv~F~~~~~~~~-~l~~~~~~~~~ 82 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGI------------QNFRLVKQFLHTFLMV-LPIGPEEVNNAVVTYSTDVHLQW-DLQSPNAVDKQ 82 (178)
T ss_dssp CEEEEEEEECCTTTCH------------HHHHHHHHHHHHHHHH-SCBSTTSEEEEEEEESSSEEEEE-CTTSGGGSCHH
T ss_pred CeeEEEEEECCCCCCH------------HHHHHHHHHHHHHHHh-cCCCCCCeEEEEEEeCCceEEEE-eCCCCCccCHH
Confidence 5789999999997752 3478899999999875 4443 348999999999999887 8887 789
Q ss_pred HHHHHhhccccccccCCCChhHHHHHHHHH
Q 025034 98 STLTAVRGISATSACGQADLTHLFKLASHE 127 (259)
Q Consensus 98 ~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e 127 (259)
++.++|..+...+ +.-++..-++.+...
T Consensus 83 ~~~~~i~~l~~~~--g~T~~~~aL~~a~~~ 110 (178)
T 2xgg_A 83 LAAHAVLDMPYKK--GSTNTSDGLKACKQI 110 (178)
T ss_dssp HHHHHHHHCCCCC--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC--CCccHHHHHHHHHHH
Confidence 9999999887322 234666666666554
No 13
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.19 E-value=0.0033 Score=60.25 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccC-------
Q 025034 21 ISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFS------- 93 (259)
Q Consensus 21 ~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FT------- 93 (259)
-.+=+|+|+||+|.-|.. +.++|+.+|+|+..|+. .+.+.-+|+++++++++.++. ++|
T Consensus 75 ~~~~dvv~VLD~SGSM~~----------~~~rl~~ak~a~~~ll~---~L~~~drv~lV~Fs~~a~~~~-p~t~~l~~~~ 140 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDY----------PRTKMMAAKEATKVAID---TLTDGAFFAVVAGTEGARVVY-PTGGQLLRAD 140 (464)
T ss_dssp -CCEEEEEEEECCGGGGT----------TTHHHHHHHHHHHHHHH---HSCTTCEEEEEEESSSEEEEE-SSSSSCEECS
T ss_pred CCCceEEEEEEcCcccCC----------CCchHHHHHHHHHHHHH---hCCCCCEEEEEEEcCceEEEe-cCCcccccCC
Confidence 367899999999998761 13789999999999997 466888999999999999997 876
Q ss_pred -CCHHHHHHHhhccccccccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe
Q 025034 94 -SDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQNRILRVILIY 144 (259)
Q Consensus 94 -sd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY 144 (259)
.|.+.+..+|..|.+.+ .-++..=++.+.+.... .+.. .|.|++.
T Consensus 141 ~~~~~~l~~~I~~L~~~G---gT~l~~aL~~A~~~l~~--~~~~-~~~IILL 186 (464)
T 4fx5_A 141 YQSRAAAKEAVGRLHANG---GTAMGRWLAQAGRIFDT--APSA-IKHAILL 186 (464)
T ss_dssp HHHHHHHHHHHHTCCCCS---CCCHHHHHHHHHHHHTT--CTTS-EEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHHHhc--CCCC-CCEEEEE
Confidence 67888999999998644 23455444444444332 2233 4555444
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.14 E-value=0.0082 Score=49.49 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccC--CCHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFS--SDIESTL 100 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FT--sd~~~i~ 100 (259)
+=+|+|+||.|.-|. .++.+|+++..|+..-..-.+.-++++++.++++.+.. +|| ++.+++.
T Consensus 6 ~~div~vlD~SgSm~--------------~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~-~l~~~~~~~~~~ 70 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY--------------PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVF-NLNTYKTKEEMI 70 (200)
T ss_dssp CEEEEEEEECCTTCC--------------CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEE-CTTTCSSHHHHH
T ss_pred cccEEEEEECCCCcc--------------cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEE-eCCCcCCHHHHH
Confidence 348999999999654 17889999999997432223578999999999999987 888 4788899
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe--ecCCCCccccC---CCCCCceEEEEEeecC--
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY--CRSSVRPQHQW---PVNQKLFTMDVLYLHD-- 171 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY--~RS~~~P~~~~---~~~~p~FflDVvYlHd-- 171 (259)
++|+.+...+. ..-++..=++.+.+..-.. ...+..-|+|++. |+++....... .+++....+-+|-+-.
T Consensus 71 ~~i~~l~~~~G-~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~ 149 (200)
T 1v7p_C 71 VATSQTSQYGG-DLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYL 149 (200)
T ss_dssp HHHHHCCCCCC-SCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHH
T ss_pred HHHHhhhccCC-CCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccc
Confidence 99998874321 1235656555555432111 1223455665554 55553211100 1233444445555521
Q ss_pred -CCCCCCChHHHHHHHHHhhhhcCCCceeEEEcC--cchHHHHHHHHHhhc
Q 025034 172 -KPGPDNCPQKVYDALVDALEHVSENEGYIFESG--QGLARILFRQMCVLL 219 (259)
Q Consensus 172 -~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg--~~~a~~L~~~ma~LL 219 (259)
....+ .......|. .+... .+..|+|.+. ..+ ..+++.+..-+
T Consensus 150 ~~~~~~--~~~~~~~L~-~iA~~-~~g~~~~~~~~~~~l-~~i~~~i~~~i 195 (200)
T 1v7p_C 150 NRNALD--TKNLIKEIK-AIASI-PTERYFFNVSDEAAL-LEKAGTLGEQI 195 (200)
T ss_dssp HHTTCC--CHHHHHHHH-HHSCS-SHHHHEEEESSSGGG-HHHHHHHHHHH
T ss_pred cccccc--hhhHHHHHH-HHhCC-ccHhcEEEcCCHHHH-HHHHHHHHhhh
Confidence 11111 112234453 34431 1224777765 444 57777665543
No 15
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.09 E-value=0.005 Score=53.91 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=75.0
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCC----HHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSD----IES 98 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd----~~~ 98 (259)
+=+|+|+||.|.-|... +.++.+|+++..|+..=..-...-++||++.++++.++. +|+.+ .++
T Consensus 21 ~~div~vlD~SgSM~~~-----------~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~-~l~~~~~~~~~~ 88 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRH-----------NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREII-RLHSDASKNKEK 88 (281)
T ss_dssp CEEEEEEEECCCCSSTH-----------HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEE-EECSSCSSCHHH
T ss_pred ceeEEEEEeCCCCcCHH-----------HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEE-EccccCccCHHH
Confidence 56899999999977621 234889999999997422222368999999999988776 77664 788
Q ss_pred HHHHhhccccc-cccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe--ecCC
Q 025034 99 TLTAVRGISAT-SACGQADLTHLFKLASHEAKKSRAQNRILRVILIY--CRSS 148 (259)
Q Consensus 99 i~~aL~~L~~~-~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY--~RS~ 148 (259)
+..+|+.|... ...+.=++..-++.+..........+-.-|+|++. |+++
T Consensus 89 l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~ 141 (281)
T 4hqf_A 89 ALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPD 141 (281)
T ss_dssp HHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCS
T ss_pred HHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCC
Confidence 99999988731 12234456666666644443322222345666665 4554
No 16
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.05 E-value=0.0044 Score=58.23 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=72.2
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCC----CHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSS----DIE 97 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTs----d~~ 97 (259)
.+=+|+|+||.|.-|.. ..++.+|+++..|+..-....++.++||++.++++..+. +++. |.+
T Consensus 8 ~~~divfvlD~SgSM~~------------~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~-~l~~~~~~~~~ 74 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSE------------NDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM-SVLNDNSRDMT 74 (509)
T ss_dssp SEEEEEEEEECSTTSCH------------HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE-CTTSGGGGCHH
T ss_pred CCeeEEEEEeCCCccch------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE-eccCCCCCCHH
Confidence 46689999999998763 247899999999998655557889999999999999887 7776 999
Q ss_pred HHHHHhhccccccc--cCCCChhHHHHHHHHH
Q 025034 98 STLTAVRGISATSA--CGQADLTHLFKLASHE 127 (259)
Q Consensus 98 ~i~~aL~~L~~~~~--~~~~DL~~LF~~i~~e 127 (259)
++..+|+.|..... ...=++..=++.+.+.
T Consensus 75 ~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~ 106 (509)
T 2odp_A 75 EVISSLENANYKDHENGTGTNTYAALNSVYLM 106 (509)
T ss_dssp HHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCCCccHHHHHHHHHHH
Confidence 99999999986532 1344565555555443
No 17
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.03 E-value=0.0052 Score=57.32 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=70.6
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeee---cccCCCHHHHHH
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLR---KEFSSDIESTLT 101 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~---~~FTsd~~~i~~ 101 (259)
+|+|+||.|.-|.. ++++.+|+++..|+..=.......++||++.++++.++. ..+|.|.+.+.+
T Consensus 3 div~vlD~SgSM~~------------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~ 70 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA------------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTK 70 (497)
T ss_dssp EEEEEEECSTTTCH------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHH
T ss_pred eEEEEEECCCCcch------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHH
Confidence 79999999997752 679999999999998654556678999999999877664 256688999999
Q ss_pred Hhhcccccc--ccCCCChhHHHHHHHHHh
Q 025034 102 AVRGISATS--ACGQADLTHLFKLASHEA 128 (259)
Q Consensus 102 aL~~L~~~~--~~~~~DL~~LF~~i~~e~ 128 (259)
+|..|.... ....=++..=++.+....
T Consensus 71 ~l~~l~~~~~~~~g~T~~~~al~~a~~~l 99 (497)
T 1rrk_A 71 QLNEINYEDHKLKSGTNTKKALQAVYSMM 99 (497)
T ss_dssp HHHHCCGGGSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHhCcCccccccCccCHHHHHHHHHHHh
Confidence 999998643 234456666656555544
No 18
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=96.94 E-value=0.0037 Score=51.13 Aligned_cols=109 Identities=12% Similarity=0.181 Sum_probs=73.3
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCC--CHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSS--DIESTL 100 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTs--d~~~i~ 100 (259)
+=+|+|+||.|.-|.. ..++.+|+++..|+..-. .+..++++++.++.+.++. +|+. |.+++.
T Consensus 5 ~~div~vlD~SgSm~~------------~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~~~~~~-~l~~~~~~~~~~ 69 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIP------------HDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEEFRIHF-TFKEFQNNPNPR 69 (194)
T ss_dssp CEEEEEEEECCTTSCH------------HHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSSEEEEE-CHHHHHHSCCHH
T ss_pred CeeEEEEEeCCCCCCH------------HHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCCceEEE-ecCCcCCHHHHH
Confidence 3589999999998763 247788999999987433 4578999999999999987 8876 445778
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe--ecCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY--CRSS 148 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY--~RS~ 148 (259)
.+|+.+...+ +.-++..-++.+....... ...+-.-|+|++. |+++
T Consensus 70 ~~i~~l~~~~--g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~ 119 (194)
T 1mf7_A 70 SLVKPITQLL--GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF 119 (194)
T ss_dssp HHHTTCCCCC--SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB
T ss_pred HHHHhCcCCC--CCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC
Confidence 8888887422 2336666566555433211 1122355666555 4554
No 19
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=96.93 E-value=0.041 Score=48.26 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=114.3
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTA 102 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~a 102 (259)
|=+|+||+|++.-|. .-++.+|+.+...+..=..++++.+|||....|..-...-+||+|..++.+.
T Consensus 3 pvDl~fl~D~S~SM~-------------~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~ 69 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQ-------------GHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRE 69 (212)
T ss_dssp CEEEEEEEECCGGGT-------------TTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHH
T ss_pred ceEEEEEEeCCCcch-------------hHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHH
Confidence 568999999999776 2378888888888865556788999999988875222223899999999999
Q ss_pred hhcccccc--ccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEeecCCCCcccc--C---CC---CCCceEE-EEEeecC
Q 025034 103 VRGISATS--ACGQADLTHLFKLASHEAKKSRAQNRILRVILIYCRSSVRPQHQ--W---PV---NQKLFTM-DVLYLHD 171 (259)
Q Consensus 103 L~~L~~~~--~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY~RS~~~P~~~--~---~~---~~p~Ffl-DVvYlHd 171 (259)
+..+..++ ..+.--++.|+..+....+..= .+ .-|+|++.+=.. |++- . .+ ++....| |-+|.+.
T Consensus 70 v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~W-r~-a~rllvl~TDa~--~H~~gDg~l~gi~~pnd~~chl~~g~y~~s 145 (212)
T 2iue_A 70 LRKQLVSGKLATPKGQLDAVVQVAICLGEIGW-RN-GTRFLVLVTDND--FHLAKDKTLGTRQNTSDGRCHLDDGMYRSR 145 (212)
T ss_dssp HHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTC-CS-SEEEEEEECSSC--BCCTTGGGGGTCCSCCCSSCCBSSSBBGGG
T ss_pred HhhccccCCCCCCchHHHHHHHHHHhhhhccc-CC-ccEEEEEECcCC--ccccCCccccccccCCccccccCCCeeccC
Confidence 99987655 2244444555554422111111 12 568888876653 3331 1 01 1122222 3466653
Q ss_pred CCCCCCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHHHHHhhccC
Q 025034 172 KPGPDNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSH 221 (259)
Q Consensus 172 ~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~~ma~LLaH 221 (259)
...+.-....++..|.+ ++-.-||-|..+. ..+|..++.+++.
T Consensus 146 ~~~Dyps~~q~~~~l~~------~~i~~ifavt~~~-~~~Y~~l~~~i~~ 188 (212)
T 2iue_A 146 GEPDYQSVVQLASKLAE------NNIQPIFVVPSRM-VKTYEKLTTFIPK 188 (212)
T ss_dssp GSSCCCCHHHHHHHHHH------HTCEEEEEEEHHH-HHHHHHHHHHSTT
T ss_pred cccCCCCHHHHHHHHHh------cCCcEEEEEccch-hHHHHHHHHHccc
Confidence 33333367888888854 2568899998777 5889999988753
No 20
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=96.93 E-value=0.01 Score=58.11 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=80.5
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCC----CHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSS----DIE 97 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTs----d~~ 97 (259)
.+=+|+|+||.|.-|.. ..++.+|+++..||..=..-..+-+|||++.++.+..+. +||. |.+
T Consensus 242 ~~~div~vlD~SgSM~~------------~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~-~l~~~~~~~~~ 308 (741)
T 3hrz_D 242 GSMNIYLVLDGSGSIGA------------SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV-KVSEADSSNAD 308 (741)
T ss_dssp CEEEEEEEEECSTTTCH------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-CTTSGGGGCHH
T ss_pred CceeEEEEeccCCcccc------------cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE-eecccCCcCHH
Confidence 46689999999998763 237789999999987533334458999999999999998 9988 999
Q ss_pred HHHHHhhcccccc--ccCCCChhHHHHHHHHHhhhh-----cCCCceEEEEEEe--ecCCC
Q 025034 98 STLTAVRGISATS--ACGQADLTHLFKLASHEAKKS-----RAQNRILRVILIY--CRSSV 149 (259)
Q Consensus 98 ~i~~aL~~L~~~~--~~~~~DL~~LF~~i~~e~~~~-----~~~~~vvRVILiY--~RS~~ 149 (259)
++.++|+.|.... ..+.=++..-++.+.+..... ...+.+-|+|++. |+++.
T Consensus 309 ~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~ 369 (741)
T 3hrz_D 309 WVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 369 (741)
T ss_dssp HHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCS
T ss_pred HHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCcccc
Confidence 9999999998422 223445666555555544211 1123467787777 55553
No 21
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=96.82 E-value=0.018 Score=48.31 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=97.8
Q ss_pred cccCCCCCC--CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecc
Q 025034 14 FTLPPMRIS--NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKE 91 (259)
Q Consensus 14 ~~l~p~~~~--pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~ 91 (259)
-+++|...| +=+|+|+||.|.-|. .++.+|+++..|+..-..-.+..++++++.++++.+.. +
T Consensus 11 ~~~~p~~~c~~~~div~vlD~SgSM~--------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~-~ 75 (223)
T 2b2x_A 11 NSFAPVQECSTQLDIVIVLDGSNSIY--------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-N 75 (223)
T ss_dssp -----------CEEEEEEEECSTTCC--------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEE-C
T ss_pred cCCCCcccCCCcceEEEEEECCCChh--------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEE-e
Confidence 356666667 478999999999654 17889999999997322124678999999999988887 7
Q ss_pred cC--CCHHHHHHHhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe--ecCCCCccccC---CCCCCce
Q 025034 92 FS--SDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY--CRSSVRPQHQW---PVNQKLF 162 (259)
Q Consensus 92 FT--sd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY--~RS~~~P~~~~---~~~~p~F 162 (259)
|+ ++.+++.++|+.+...+- ..-++..-++.+....-.. ...+..-|+|++. |+++.-..... .+++...
T Consensus 76 l~~~~~~~~~~~~i~~l~~~gG-~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi 154 (223)
T 2b2x_A 76 LNKYSSTEEVLVAANKIVQRGG-RQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENI 154 (223)
T ss_dssp TTTCCSHHHHHHHHTTCCCCCC-SSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHHHTTTE
T ss_pred cCCCCCHHHHHHHHHhhhccCC-CCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCC
Confidence 75 356788888888764321 1245655555554432111 1223345555544 45554321100 1233444
Q ss_pred EEEEEeecCCCCCCC-ChHHHHHHHHHhhhhcCC-CceeEEEcC--cchHHHHHHHHHhhcc
Q 025034 163 TMDVLYLHDKPGPDN-CPQKVYDALVDALEHVSE-NEGYIFESG--QGLARILFRQMCVLLS 220 (259)
Q Consensus 163 flDVvYlHd~~~~dn-c~q~Vyd~L~~~ld~~s~-~~sYi~Evg--~~~a~~L~~~ma~LLa 220 (259)
.+-+|-+=+..+..+ -....-+.| ..+.. . ..+++|.+. ..+ .++++.+..-+.
T Consensus 155 ~v~~igvG~~~~~~~~~~~~~~~~L-~~iA~--~p~~g~~~~~~~~~~L-~~i~~~i~~~ic 212 (223)
T 2b2x_A 155 QRFSIAILGHYNRGNLSTEKFVEEI-KSIAS--EPTEKHFFNVSDELAL-VTIVKALGERIF 212 (223)
T ss_dssp EEEEEEECGGGC---CCCHHHHHHH-HTTSC--SSGGGTEEEESSTTGG-GGGHHHHHTTTC
T ss_pred EEEEEEecCccccccccchhHHHHH-HHHhC--CCchhcEEEeCCHHHH-HHHHHHHHHhhc
Confidence 444444421111000 011122344 23433 2 236666665 444 577777765553
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.73 E-value=0.0079 Score=49.89 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=60.0
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-CCccEEEEEecccceeeecccCC--CHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-PDHRFAFVTLAKTASWLRKEFSS--DIES 98 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-p~HeFAl~~L~dsasWl~~~FTs--d~~~ 98 (259)
.+-+|+|+||.|.-|.. ..++.+|+++..|+.. +.+. +.-+||+++.++.+.+.. +|+. |.++
T Consensus 20 ~~~DivfvlD~S~Sm~~------------~~~~~~k~~~~~~~~~-l~~~~~~~rv~vv~fs~~~~~~~-~l~~~~~~~~ 85 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGE------------ADFNRSKEFMEEVIQR-MDVGQDSIHVTVLQYSYMVTVEY-PFSEAQSKGD 85 (199)
T ss_dssp CCCEEEEEEECCTTTCH------------HHHHHHHHHHHHHHHH-SCBSTTSBEEEEEEESSSEEEEE-CTTSCCCHHH
T ss_pred CCcCEEEEEECCCCCCH------------HHHHHHHHHHHHHHHh-cCCCCCceEEEEEEECCcccEEE-ecCCcCCHHH
Confidence 36899999999997762 3477889999888873 3343 568999999999999987 8886 8899
Q ss_pred HHHHhhccccc
Q 025034 99 TLTAVRGISAT 109 (259)
Q Consensus 99 i~~aL~~L~~~ 109 (259)
+..+|+.+...
T Consensus 86 ~~~~i~~l~~~ 96 (199)
T 3zqk_A 86 ILQRLREIRYQ 96 (199)
T ss_dssp HHHHHHHCCCC
T ss_pred HHHHHHhCcCC
Confidence 99999988743
No 23
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=96.58 E-value=0.022 Score=49.65 Aligned_cols=112 Identities=12% Similarity=0.155 Sum_probs=71.6
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHh-HHHHHHHHHHHHhhhcCC-CCccEEEEEecccceeeecccCCC----H
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRL-DAMKQAILLFVNSKLSIN-PDHRFAFVTLAKTASWLRKEFSSD----I 96 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL-~~iK~aI~~FV~~K~~i~-p~HeFAl~~L~dsasWl~~~FTsd----~ 96 (259)
+=+|+|+||.|.-|... .+ +.+|+++..++..= .+. +.-++|+++.++.+.++. +|+.+ .
T Consensus 18 ~~DivfvlD~SgSM~~~------------~~~~~~k~~~~~lv~~l-~~~~~~~rvglv~Fs~~~~~~~-~l~~~~~~~~ 83 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYP------------NWITKVIPMLNGLINSL-SLSRDTINLYMNLFGSYTTELI-RLGSGQSIDK 83 (266)
T ss_dssp CEEEEEEEECSTTTCHH------------HHHHTHHHHHHHHHHTC-CBCTTSEEEEEEEESSSEEEEE-CTTSHHHHCH
T ss_pred ceeEEEEEECCCCcChh------------HHHHHHHHHHHHHHHHc-ccCCCCcEEEEEEecCCcceEE-ecCCCCccCH
Confidence 45899999999987631 23 36788888888643 333 579999999999998887 88865 7
Q ss_pred HHHHHHhhccccc-cccCCCChhHHHHHHHHHhhhhcCCCceEEEEEEe--ecCC
Q 025034 97 ESTLTAVRGISAT-SACGQADLTHLFKLASHEAKKSRAQNRILRVILIY--CRSS 148 (259)
Q Consensus 97 ~~i~~aL~~L~~~-~~~~~~DL~~LF~~i~~e~~~~~~~~~vvRVILiY--~RS~ 148 (259)
+.+.++|+.|... ...+.-++..=++.+..........+-.-|+|++. |+++
T Consensus 84 ~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~ 138 (266)
T 4hqo_A 84 RQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPN 138 (266)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCS
T ss_pred HHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCC
Confidence 8899999988510 11123345554454433333221222244666665 4554
No 24
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.44 E-value=0.0061 Score=54.73 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=58.5
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc----eeeecccCCCHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA----SWLRKEFSSDIE 97 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa----sWl~~~FTsd~~ 97 (259)
.|=+|||+||.|.-|. .+|..+|+|+..++.+--.-..+-|+|++++++.. .-+. +||++.
T Consensus 133 ~~~~vvfLVDtSgSM~-------------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~-pfT~~~- 197 (242)
T 3rag_A 133 VALHLVVCLDTSASMR-------------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQ-PFSSEV- 197 (242)
T ss_dssp SCEEEEEEEECSGGGT-------------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEE-EEESSC-
T ss_pred CCCCEEEEEECcccHH-------------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecC-CCCChH-
Confidence 3568999999999664 24999999999999864333447799999999864 3444 999999
Q ss_pred HHHHHhhcccccc
Q 025034 98 STLTAVRGISATS 110 (259)
Q Consensus 98 ~i~~aL~~L~~~~ 110 (259)
.+...|..|...+
T Consensus 198 ~~~~~l~~L~agG 210 (242)
T 3rag_A 198 NVAALEAELVARG 210 (242)
T ss_dssp CHHHHHHHCCCCS
T ss_pred HHHHHHhhCCCCC
Confidence 8888899987654
No 25
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=96.44 E-value=0.043 Score=45.57 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=72.1
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccC--CCHHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFS--SDIESTL 100 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FT--sd~~~i~ 100 (259)
+=+|+|+||.|.-|. .++.+|+++..|+..-..-.+..++++++.++.+.+.. +|+ .+.+++.
T Consensus 7 ~~div~vlD~SgSm~--------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~-~l~~~~~~~~~~ 71 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY--------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-NLNKYSSTEEVL 71 (213)
T ss_dssp CEEEEEEEECCTTCC--------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEE-CTTTCSSHHHHH
T ss_pred CccEEEEEECCCChh--------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEE-eccccCCHHHHH
Confidence 568999999999654 17889999999996432224679999999999988887 774 3577888
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe--ecCCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY--CRSSV 149 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY--~RS~~ 149 (259)
++|..+...+. ..-++..-++.+....-.. ...+-.-|+|++. |+++.
T Consensus 72 ~~i~~l~~~~G-~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~ 123 (213)
T 1pt6_A 72 VAAKKIVQRGG-RQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHD 123 (213)
T ss_dssp HHHHTCCCCCC-SSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSC
T ss_pred HHHHhccCCCC-CcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC
Confidence 88888764321 1235555555554432111 1223345555544 55554
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.37 E-value=0.031 Score=45.44 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=66.5
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCC-ccEEEEEecccceeeecccCCCH--HHHH
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPD-HRFAFVTLAKTASWLRKEFSSDI--ESTL 100 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~-HeFAl~~L~dsasWl~~~FTsd~--~~i~ 100 (259)
=+|+|+||.|.-|.. ..++.+|+++..++.. +++. .++|+++.++++.+.. +|+... +++.
T Consensus 3 ~divfvlD~S~Sm~~------------~~~~~~k~~~~~~~~~---l~~~~~rv~vv~fs~~~~~~~-~l~~~~~~~~~~ 66 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQP------------DEFQKILDFMKDVMKK---CSNTSYQFAAVQFSTSYKTEF-DFSDYVKRKDPD 66 (179)
T ss_dssp EEEEEEEECBTTCCH------------HHHHHHHHHHHHHHHH---TTTSSEEEEEEEESSSEEEEE-CHHHHHHHCCHH
T ss_pred ccEEEEEeCCCCCCH------------HHHHHHHHHHHHHHHH---hCCCCeEEEEEEECCceeEEE-cCcccCCHHHHH
Confidence 489999999997762 2477889999999875 3555 5999999999999987 887521 1344
Q ss_pred HHhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe--ecCCC
Q 025034 101 TAVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY--CRSSV 149 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY--~RS~~ 149 (259)
.++..+.... ..-++..=++.+..+.-.. ...+-+-|+|++. |+++.
T Consensus 67 ~~~~~i~~~~--g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~ 117 (179)
T 1mjn_A 67 ALLKHVKHML--LLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATD 117 (179)
T ss_dssp HHHTTCCCCC--BCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSS
T ss_pred HHHHhcccCC--CCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCC
Confidence 4455444321 2335555555554332211 1222355665554 55553
No 27
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.76 E-value=0.16 Score=51.46 Aligned_cols=179 Identities=10% Similarity=0.070 Sum_probs=111.2
Q ss_pred CCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc-------------
Q 025034 19 MRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA------------- 85 (259)
Q Consensus 19 ~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa------------- 85 (259)
...-|=||+|++|++.-|.. -|+.+|+.+..++..=..+.++.+|+|..+.|-.
T Consensus 107 ~~~~pvDly~LmD~S~SM~d-------------di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~ 173 (690)
T 3fcs_B 107 VEDYPVDIYYLMDLSYSMKD-------------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEAL 173 (690)
T ss_dssp CBTCCEEEEEEEECSGGGHH-------------HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTT
T ss_pred cCCCCccEEEEecCCcchHH-------------HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhc
Confidence 33568899999999998773 2455566666666554457788999999998721
Q ss_pred -------------ee---eecccCCCHHHHHHHhhccccccccCCCChhHHHHHHHHHhhhh--cCC-CceEEEEEEeec
Q 025034 86 -------------SW---LRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKS--RAQ-NRILRVILIYCR 146 (259)
Q Consensus 86 -------------sW---l~~~FTsd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~-~~vvRVILiY~R 146 (259)
.| ...+||+|+..+.+.|..+..++.-+.. +.-|+.|.|-+.-. .-+ +-.-|+|++..-
T Consensus 174 ~~pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~P--E~g~dAl~qa~~c~~~igWr~~a~rllv~~TD 251 (690)
T 3fcs_B 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAP--EGGFDAIMQATVCDEKIGWRNDASHLLVFTTD 251 (690)
T ss_dssp TCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSS--BCHHHHHHHHHHCHHHHTCCSSSEEEEEEEES
T ss_pred cCCCcCCCCCCCCCccceeecccCCCHHHHHHHhhceeccCCCCCC--chHHHHHHHHhhcccccCCCCCceEEEEEECC
Confidence 01 1127899999999999998876532211 23455555443222 122 236788888876
Q ss_pred CCCCccccC-----C---CCCCceEEE--EEeecCCCCCCCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHHHHH
Q 025034 147 SSVRPQHQW-----P---VNQKLFTMD--VLYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFRQMC 216 (259)
Q Consensus 147 S~~~P~~~~-----~---~~~p~FflD--VvYlHd~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~~ma 216 (259)
.. +++-. . -++..-+|| -+|.|...-+--....++..|.+ ++-..||=|..+. ..+|+.+.
T Consensus 252 a~--~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~------~~i~~ifavt~~~-~~~y~~l~ 322 (690)
T 3fcs_B 252 AK--THIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQ------KNINLIFAVTENV-VNLYQNYS 322 (690)
T ss_dssp SC--BCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHH------TTCEEEEEEEGGG-HHHHHHHH
T ss_pred Cc--cccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHH------cCCeEEEEEeCCc-hhhHHHHH
Confidence 65 33310 0 133345555 35776554333345666666643 3567788887766 47888888
Q ss_pred hhccC
Q 025034 217 VLLSH 221 (259)
Q Consensus 217 ~LLaH 221 (259)
.++.-
T Consensus 323 ~~i~~ 327 (690)
T 3fcs_B 323 ELIPG 327 (690)
T ss_dssp HHSTT
T ss_pred hhcCC
Confidence 77743
No 28
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.21 E-value=0.16 Score=52.75 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=43.5
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA 85 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa 85 (259)
.|=+|||+||+|.-|.... . ...+||+.+|+|+..|+. .+.-+++.++||++.+.++
T Consensus 223 ~~~DIVfVLD~SGSM~~~~-~-----~~~~Rl~~~K~a~~~~ld-~L~~~~~drVgLV~Fs~~a 279 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIR-N-----KNARRAERAGEATRSLID-KITSDSENRVALVTYASTI 279 (893)
T ss_dssp CCEEEEEEEECCGGGCTTH-H-----HHCCHHHHHHHHHHHHHH-HHHTSTTCEEEEEEESSSB
T ss_pred CCccEEEEEeCCCCCCCcC-c-----cchhHHHHHHHHHHHHHH-HhhcCCCcEEEEEEecCcc
Confidence 5668999999999887421 1 123589999999999994 3333578999999999754
No 29
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=95.20 E-value=0.041 Score=44.58 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=56.3
Q ss_pred ccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCC--CHHHHHH
Q 025034 24 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSS--DIESTLT 101 (259)
Q Consensus 24 EkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTs--d~~~i~~ 101 (259)
=+|+|+||.|.-|... .++..|+++..++..=. .+..++++++.++.+.... +|+. +.+.+.+
T Consensus 10 ~div~vlD~SgSM~~~------------~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~~~~~-~~~~~~~~~~~~~ 74 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSR------------NFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQTHF-TFEEFRRSSNPLS 74 (198)
T ss_dssp EEEEEEEECCTTSCHH------------HHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSEEEEE-CHHHHHHCSSGGG
T ss_pred eeEEEEEECCCCCCHH------------HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCccEEE-ecCccCCHHHHHH
Confidence 5899999999988741 24456666666665311 7889999999999988887 7754 2234566
Q ss_pred HhhccccccccCCCChhHHHHHHH
Q 025034 102 AVRGISATSACGQADLTHLFKLAS 125 (259)
Q Consensus 102 aL~~L~~~~~~~~~DL~~LF~~i~ 125 (259)
+|..+... .+.-++..-++.+.
T Consensus 75 ~i~~l~~~--~g~T~~~~al~~a~ 96 (198)
T 1n3y_A 75 LLASVHQL--QGFTYTATAIQNVV 96 (198)
T ss_dssp GGTTCCCC--CSCBCHHHHHHHHH
T ss_pred HHhcCcCC--CCCchHHHHHHHHH
Confidence 66666532 23445655555554
No 30
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=94.52 E-value=1.3 Score=43.26 Aligned_cols=179 Identities=10% Similarity=0.077 Sum_probs=116.8
Q ss_pred CCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccc-----------
Q 025034 17 PPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTA----------- 85 (259)
Q Consensus 17 ~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsa----------- 85 (259)
++....|=|+.|++|++.-|.- -|+.+|+.....+..=..+.++.+++|..+.|-.
T Consensus 105 ~~~~~ypvDLy~LmDlS~SM~d-------------dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~ 171 (472)
T 3t3p_B 105 RQVEDYPVDIYYLMDLSYSMKD-------------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (472)
T ss_dssp ECCSSCCEEEEEEEECSGGGHH-------------HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHH
T ss_pred ecCCCCCceEEEEEccCcchHH-------------HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhh
Confidence 3344568899999999997772 3667777777777766678899999999998731
Q ss_pred ---------------ee----eecccCCCHHHHHHHhhccccccccCCCChhHHHHHHHHHhhhhc--CC-CceEEEEEE
Q 025034 86 ---------------SW----LRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSR--AQ-NRILRVILI 143 (259)
Q Consensus 86 ---------------sW----l~~~FTsd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~~--~~-~~vvRVILi 143 (259)
.| .. .||+|+..+.+.+..+..++.-+. -+.-|+.|.|-+.-.+ .+ +-.-|+|++
T Consensus 172 ~l~nPc~~~~~~c~p~f~fr~~l-~LT~d~~~F~~~V~~~~iSGn~D~--PEgg~dAl~qaavC~~~igWR~~a~rllV~ 248 (472)
T 3t3p_B 172 ALENPCYDMKTTCLPMFGYKHVL-TLTDQVTRFNEEVKKQSVSRNRDA--PEGGFDAIMQATVCDEKIGWRNDASHLLVF 248 (472)
T ss_dssp HHHCTTTTTTSCCCCCCSEEEEE-EEESCHHHHHHHHHHCCCCCCSSS--SBCHHHHHHHHHHCHHHHTCCSSSEEEEEE
T ss_pred hhcCCCcccccCCCCCcceeEee-ccCCCHHHHHHHHhhccccCCCCC--CchHHHHHHHHhcchhhcCCCCCceEEEEE
Confidence 11 23 789999999999999887653211 1234555554432221 22 235677776
Q ss_pred eecCCCCcccc--C---C---CCCCceEEEE--EeecCCCCCCCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHH
Q 025034 144 YCRSSVRPQHQ--W---P---VNQKLFTMDV--LYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFR 213 (259)
Q Consensus 144 Y~RS~~~P~~~--~---~---~~~p~FflDV--vYlHd~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~ 213 (259)
.+=.. +++- . . -++...+||. +|.+...-+--....++..|.+ ++-.-||=|.... ..+|.
T Consensus 249 ~TDa~--~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e------~nI~~IFAVt~~~-~~~Y~ 319 (472)
T 3t3p_B 249 TTDAK--THIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQ------KNINLIFAVTENV-VNLYQ 319 (472)
T ss_dssp EESSC--BCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHH------TTCEEEEEECGGG-HHHHH
T ss_pred ECCCC--cCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHh------cCccEEEEEeccc-hhHHH
Confidence 66444 3431 1 1 1445677774 7877554443356666666643 3567899998777 58999
Q ss_pred HHHhhcc
Q 025034 214 QMCVLLS 220 (259)
Q Consensus 214 ~ma~LLa 220 (259)
.++.|+.
T Consensus 320 ~L~~~ip 326 (472)
T 3t3p_B 320 NYSELIP 326 (472)
T ss_dssp HHHHTST
T ss_pred HHHHhCC
Confidence 9888873
No 31
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=93.80 E-value=0.31 Score=49.34 Aligned_cols=181 Identities=10% Similarity=0.108 Sum_probs=107.8
Q ss_pred CCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc------------
Q 025034 17 PPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT------------ 84 (259)
Q Consensus 17 ~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds------------ 84 (259)
++....|=||+|++|++.-|... |+.+|+.+..++..=..+.++.+|+|..+.|-
T Consensus 98 ~~~~~ypvDly~LmD~S~SM~dd-------------i~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~ 164 (687)
T 3k6s_B 98 RRAKGYPIDLYYLMDLSYSMLDD-------------LRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK 164 (687)
T ss_dssp CCCCCCCCEEEEEEECSSTTHHH-------------HHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred eccCCCceeEEEEEcCCcchHHH-------------HHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence 34445688999999999988742 33444444444444345788999999999871
Q ss_pred -------------cee----eecccCCCHHHHHHHhhccccccccCCCChhHHHHHHHHHhh--hhcCCCceEEEEEEee
Q 025034 85 -------------ASW----LRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAK--KSRAQNRILRVILIYC 145 (259)
Q Consensus 85 -------------asW----l~~~FTsd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~--~~~~~~~vvRVILiY~ 145 (259)
..| .. .||+|+..+.+.|..+..++.-+.. +.-|+.|.|-+. ....+.-..|+|++..
T Consensus 165 ~~~Pc~~~~~~c~~~f~f~~~l-~lt~~~~~F~~~v~~~~isgn~D~P--E~g~dAl~qa~vc~~~igWr~a~rllV~~T 241 (687)
T 3k6s_B 165 LRNPCPNKEKECQPPFAFRHVL-KLTNNSNQFQTEVGKQLISGNLDAP--EGGLDAMMQVAACPEEIGWRNVTRLLVFAT 241 (687)
T ss_dssp TTCCCCSCCCCCCCCCSCEEEE-EEESCSHHHHHHHHTSCCCCCSSSS--CCHHHHHHHHTTCHHHHCCCSSCCEEEEEC
T ss_pred ccCCCCCCCCCcCCcccceeec-ccCCCHHHHHHHHhhccccCCCCCC--chHHHHHHHHhhcccccCCccceEEEEEEC
Confidence 011 22 7899999999999998876532211 235565655442 1122222778888776
Q ss_pred cCCCCccccC-----CC---CCCceEEE-EEeecCCCCCCCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHHHHH
Q 025034 146 RSSVRPQHQW-----PV---NQKLFTMD-VLYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFRQMC 216 (259)
Q Consensus 146 RS~~~P~~~~-----~~---~~p~FflD-VvYlHd~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~~ma 216 (259)
-.. +++-. .+ ++..-+|| -+|.+...-+--....++..|.+ ++-..||=|..+. ..+|+.+.
T Consensus 242 Da~--~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~------~~I~~ifavt~~~-~~~y~~l~ 312 (687)
T 3k6s_B 242 DDG--FHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAE------NNIQPIFAVTSRM-VKTYEKLT 312 (687)
T ss_dssp SSC--CCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHH------TTCBCCEEECGGG-HHHHHHHH
T ss_pred CCc--cccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHH------cCCeEEEEEeccc-hhhHHHHH
Confidence 554 23210 01 12222222 34555433322235556666643 3567788887666 47888888
Q ss_pred hhccCC
Q 025034 217 VLLSHP 222 (259)
Q Consensus 217 ~LLaHP 222 (259)
.++.-=
T Consensus 313 ~~i~~s 318 (687)
T 3k6s_B 313 EIIPKS 318 (687)
T ss_dssp HHSSSC
T ss_pred hhcCCc
Confidence 887543
No 32
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=92.21 E-value=8.9 Score=37.19 Aligned_cols=179 Identities=12% Similarity=0.104 Sum_probs=114.2
Q ss_pred CCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc------------
Q 025034 17 PPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT------------ 84 (259)
Q Consensus 17 ~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds------------ 84 (259)
++....|=|+.|++|++.-|. .-|+-+|+.....+..=..+.++.+++|..+.|-
T Consensus 116 ~~~~~yPVDLyyLmDlS~SM~-------------ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~ 182 (454)
T 3vi3_B 116 KRAEDYPIDLYYLMDLSYSMK-------------DDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAK 182 (454)
T ss_dssp ECCSCCCEEEEEEEECSGGGH-------------HHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTT
T ss_pred ecCCCCceeEEEEecCCcchh-------------hHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHH
Confidence 334446889999999999777 3367788888888877778889999999999872
Q ss_pred ------------cee----eecccCCCHHHHHHHhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEeec
Q 025034 85 ------------ASW----LRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIYCR 146 (259)
Q Consensus 85 ------------asW----l~~~FTsd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY~R 146 (259)
..| .. .||+|...+.+.+..+..++.-+. -+.-|+.|.|-+.-. .-+.-.-|+|++.+=
T Consensus 183 ~~nPC~~~~~c~~~f~fr~~l-~LT~d~~~F~~~V~~~~isGn~D~--PEgg~DAl~Qaavc~~~igWR~a~rllV~~TD 259 (454)
T 3vi3_B 183 LRNPCTSEQNCTTPFSYKNVL-SLTNKGEVFNELVGKQRISGNLDS--PEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTD 259 (454)
T ss_dssp TTCCSCSSSCCCCCCSEEEEE-EEESCHHHHHHHHTTCCCCCCSSS--SBCHHHHHHHHHHCHHHHTCCSSEEEEEEEES
T ss_pred hcCCCcCccCCCCCcceeeee-ecCCCHHHHHHHHhhccccCCCcC--CchhHHHHHHHhccccccCCccceEEEEEECC
Confidence 111 33 899999999999999887653211 123455555443222 222225666666554
Q ss_pred CCCCccccC-----C---CCCCceEEE-EEeecCCCCCCCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHHHHHh
Q 025034 147 SSVRPQHQW-----P---VNQKLFTMD-VLYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFRQMCV 217 (259)
Q Consensus 147 S~~~P~~~~-----~---~~~p~FflD-VvYlHd~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~~ma~ 217 (259)
.. +++-. . -++...+|| -+|.|...-+--....+...|.+ ++-.-||=|.... ..+|..+..
T Consensus 260 a~--fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e------~nI~~IFAVt~~~-~~~Y~~L~~ 330 (454)
T 3vi3_B 260 AG--FHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSE------NNIQTIFAVTEEF-QPVYKELKN 330 (454)
T ss_dssp SC--BCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHH------TTEEEEEEEEGGG-HHHHHHHHH
T ss_pred CC--cCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHh------cCCcEEEEEcCcc-chHHHHHHH
Confidence 43 34311 1 144556676 36766444332244555555532 4567799888776 588888888
Q ss_pred hcc
Q 025034 218 LLS 220 (259)
Q Consensus 218 LLa 220 (259)
|+.
T Consensus 331 ~ip 333 (454)
T 3vi3_B 331 LIP 333 (454)
T ss_dssp HST
T ss_pred hCC
Confidence 874
No 33
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=91.79 E-value=4.2 Score=39.93 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=116.2
Q ss_pred cCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEeccc-----c-----
Q 025034 16 LPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKT-----A----- 85 (259)
Q Consensus 16 l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~ds-----a----- 85 (259)
.++....|=|+.|++|++.-|. .-|+.+|+.....+..=..+.++.+++|..+.|- .
T Consensus 125 ~~~~~~yPVDLyyLmDlS~SM~-------------ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~ 191 (503)
T 3v4v_B 125 FLRAEGYPVDLYYLMDLSYSMK-------------DDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPS 191 (503)
T ss_dssp EECCSSCCEEEEEEEECSGGGH-------------HHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHH
T ss_pred EEccCCCceeEEEEEecCcchh-------------hHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHH
Confidence 3444456889999999999777 2367778777777776667899999999999872 1
Q ss_pred ---------------ee----eecccCCCHHHHHHHhhccccccccCCCChhHHHHHHHHHhhhh--cCCCceEEEEEEe
Q 025034 86 ---------------SW----LRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKS--RAQNRILRVILIY 144 (259)
Q Consensus 86 ---------------sW----l~~~FTsd~~~i~~aL~~L~~~~~~~~~DL~~LF~~i~~e~~~~--~~~~~vvRVILiY 144 (259)
.| +. .||+|+....+.+..+..++.-+. -+.-|+.|.|-+.-. ..+.-.-|+|++-
T Consensus 192 ~l~~PC~~~~~~c~p~f~fr~~l-~LT~d~~~F~~~V~~~~iSGnlD~--PEggfDAlmQaavC~~~IgWR~a~rllV~~ 268 (503)
T 3v4v_B 192 KLRHPCPTRLERCQSPFSFHHVL-SLTGDAQAFEREVGRQSVSGNLDS--PEGGFDAILQAALCQEQIGWRNVSRLLVFT 268 (503)
T ss_dssp HHHCCSSCSSSCCCCCCSEEEEE-EEESCSHHHHHHHTTCCCCCCSSS--SBCHHHHHHHHHHCHHHHTCCSSEEEEEEE
T ss_pred HhcCCCcCCCCCCCCCcceEEEE-EecCCHHHHHHHHhhcCccCCCCC--CchHHHHHHHHhhcccccCCCcceEEEEEE
Confidence 11 23 789999999999998887653211 123455555443211 1221145766554
Q ss_pred ecCCCCccccC-----C---CCCCceEEE--EEeecCCCCCCCChHHHHHHHHHhhhhcCCCceeEEEcCcchHHHHHHH
Q 025034 145 CRSSVRPQHQW-----P---VNQKLFTMD--VLYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFESGQGLARILFRQ 214 (259)
Q Consensus 145 ~RS~~~P~~~~-----~---~~~p~FflD--VvYlHd~~~~dnc~q~Vyd~L~~~ld~~s~~~sYi~Evg~~~a~~L~~~ 214 (259)
+=. .+++-. . -++...+|| -+|.+...-+--....++..|.+ ++-.-||=|.... ..+|..
T Consensus 269 TDA--~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~e------nnI~~IFAVt~~~-~~~Y~~ 339 (503)
T 3v4v_B 269 SDD--TFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSA------ANIQPIFAVTSAA-LPVYQE 339 (503)
T ss_dssp ESS--CBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHH------HTEEEEEEECSSS-HHHHHH
T ss_pred CCC--CcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHh------cCCeEEEEEcccc-hhHHHH
Confidence 433 344311 1 144567777 37876554443346666666643 3567899998777 489999
Q ss_pred HHhhccC
Q 025034 215 MCVLLSH 221 (259)
Q Consensus 215 ma~LLaH 221 (259)
+..|+.-
T Consensus 340 L~~~ip~ 346 (503)
T 3v4v_B 340 LSKLIPK 346 (503)
T ss_dssp HHTTSTT
T ss_pred HHHhCCC
Confidence 9888753
No 34
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=90.12 E-value=0.84 Score=48.25 Aligned_cols=70 Identities=11% Similarity=0.244 Sum_probs=54.8
Q ss_pred CccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCC-CccEEEEEecccceeeecccCC--CHHHH
Q 025034 23 NEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINP-DHRFAFVTLAKTASWLRKEFSS--DIEST 99 (259)
Q Consensus 23 pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p-~HeFAl~~L~dsasWl~~~FTs--d~~~i 99 (259)
+=+|+|+||.|.-|.. .+++.+|+++..|+.. +++ +.++|+++.++.+.... +|+. |.+++
T Consensus 130 ~~DIvfvlD~SgSm~~------------~~f~~~k~fv~~lv~~---~~~~~~rVglV~Fs~~~~~~~-~lt~~~~~~~l 193 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISS------------RNFATMMNFVRAVISQ---FQRPSTQFSLMQFSNKFQTHF-TFEEFRRSSNP 193 (1095)
T ss_dssp CEEEEEEEECCTTSCS------------HHHHHHHHHHHHHHHS---SCSSSEEEEEEEESSSEEEEE-CSHHHHSCSCG
T ss_pred CccEEEEEcCCCCCCh------------hHHHHHHHHHHHHHHh---ccccccEEEEEEECCeEEEEe-cCcccCCHHHH
Confidence 4589999999997652 3578889999999873 334 48999999999999988 8885 66667
Q ss_pred HHHhhcccc
Q 025034 100 LTAVRGISA 108 (259)
Q Consensus 100 ~~aL~~L~~ 108 (259)
..+|+.|..
T Consensus 194 ~~ai~~i~~ 202 (1095)
T 3k6s_A 194 LSLLASVHQ 202 (1095)
T ss_dssp GGGTTTCCC
T ss_pred HHHHhhhhc
Confidence 777777753
No 35
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=79.47 E-value=6.1 Score=40.15 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=48.1
Q ss_pred CCccccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeec
Q 025034 11 AGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRK 90 (259)
Q Consensus 11 ~~~~~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~ 90 (259)
+=||.++...-.|=-.|||||++.+.. .|+.+|++|...+. .+.++-++||+|.+..+...
T Consensus 109 tvEy~~p~~~~~pp~~vFvIDvs~~~~--------------~l~~l~~sl~~~L~---~Lp~~~~VGlITf~~~V~~y-- 169 (768)
T 1m2o_A 109 TIEYITNKPVTVPPIFFFVVDLTSETE--------------NLDSLKESIITSLS---LLPPNALIGLITYGNVVQLH-- 169 (768)
T ss_dssp EEEEECSCCCCSCCEEEEEEECCSCHH--------------HHHHHHHHHHHHHH---TSCTTCEEEEEEESSEEEEC--
T ss_pred CEEEECCCCCCCCCEEEEEEECCcCHH--------------HHHHHHHHHHHHHH---hCCCCCEEEEEEECCEEEEE--
Confidence 445666553335667899999999754 16778888888875 57788999999999877666
Q ss_pred ccCCC
Q 025034 91 EFSSD 95 (259)
Q Consensus 91 ~FTsd 95 (259)
++.++
T Consensus 170 ~l~~~ 174 (768)
T 1m2o_A 170 DLSSE 174 (768)
T ss_dssp CCSSS
T ss_pred ECCCC
Confidence 44443
No 36
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=77.36 E-value=9 Score=36.80 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=48.6
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHH--HHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHH
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQA--ILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIEST 99 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~a--I~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i 99 (259)
.+-+|+||||+|.-|...- .| ++|+. +++ +..|+..+ +.-+++|+++++. .+.. ++|.+-. +
T Consensus 367 ~~~~v~lvvD~SgSM~~~~-----~~---~~l~~-~~~Aa~l~~~~~~----~~d~vglv~Fs~~-~~~~-~~t~~~~-l 430 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRV-----LG---SILNA-SVVAAAMCMLVAR----TEKDSHMVAFSDE-MLPC-PITVNML-L 430 (538)
T ss_dssp CCCCEEEEEECSGGGGSBS-----TT---SSCBH-HHHHHHHHHHHHH----HCSSEEEEEESSS-EECC-SCCTTSC-H
T ss_pred CCceEEEEEECccccCCCC-----CC---CcHHH-HHHHHHHHHHHhc----cCCceEEEEECCC-ceEc-CCCCccc-H
Confidence 3678999999999887311 12 44666 444 44555443 3458999999973 3333 6665532 4
Q ss_pred HHHhhccccccccCCCChhHHHHHH
Q 025034 100 LTAVRGISATSACGQADLTHLFKLA 124 (259)
Q Consensus 100 ~~aL~~L~~~~~~~~~DL~~LF~~i 124 (259)
..+|+.|... ..+.=|+..-...+
T Consensus 431 ~~~l~~l~~~-~~GgT~i~~aL~~a 454 (538)
T 1yvr_A 431 HEVVEKMSDI-TMGSTDCALPMLWA 454 (538)
T ss_dssp HHHHHHHTTC-CCSCCCTTHHHHHH
T ss_pred HHHHHHHhcC-CCCCCcHHHHHHHH
Confidence 4444444421 12233555544444
No 37
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=75.18 E-value=8 Score=39.34 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCccccCCCCCCCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 11 AGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 11 ~~~~~l~p~~~~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
+=||.++..--.|=-+|||||++.+.. .|..+|++|..++. .+.++-+.||+|.+.++...
T Consensus 120 tvEy~~~~~~p~pp~~vFvIDvS~~a~--------------~l~~l~~si~~~L~---~Lp~~~~VGlITf~~~v~~y 180 (769)
T 2nut_A 120 SIEYVVLRGPQMPLIFLYVVDTCMEDE--------------DLQALKESMQMSLS---LLPPTALVGLITFGRMVQVH 180 (769)
T ss_dssp SEEEEECSSCCCCCEEEEEEECCSCHH--------------HHHHHHHHHHHHHT---TSCTTCEEEEEEESSEEEEE
T ss_pred cEEEEccCCCCCCCEEEEEEECCccHH--------------HHHHHHHHHHHHHH---hCCCCceEEEEEeCCEEEEE
Confidence 334555432224567899999999733 27889999999985 57788999999999887765
No 38
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=53.72 E-value=27 Score=35.74 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=38.0
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC---CCccEEEEEecccceee
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN---PDHRFAFVTLAKTASWL 88 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~---p~HeFAl~~L~dsasWl 88 (259)
.|=-.|||||++.++.. - .-|..+|++|..-+. .+- ++.++||+|.+.++..+
T Consensus 186 ~pp~yvFvIDvs~~av~-~----------g~l~~~~~si~~~L~---~Lp~~~~~~~VGlITfd~~V~~~ 241 (810)
T 1pcx_A 186 PPATYCFLIDVSQSSIK-S----------GLLATTINTLLQNLD---SIPNHDERTRISILCVDNAIHYF 241 (810)
T ss_dssp CCCEEEEEEECSHHHHH-H----------THHHHHHHHHHHHTT---TSCCTTSCCEEEEEEESSSEEEE
T ss_pred CCcEEEEEEECChHHHh-h----------hHHHHHHHHHHHHHH---hCCCCCCCcEEEEEEECCEEEEE
Confidence 45678999999997531 1 126778888877663 232 37899999998887665
No 39
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=51.47 E-value=62 Score=31.11 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCccEEEEEeCChhhhh-hhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHH
Q 025034 22 SNEDIIFCVDVDAESLV-EMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTL 100 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~-~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~ 100 (259)
-+-+|++|||+|.-|.. .. .+.++.++++..... .|+-.+ -+ -+.+|+++.+. +...+.+.+ +.+.
T Consensus 361 ~~~~~lv~vDvSgSM~~~~~----~~~~k~~~~e~Aa~l--a~~~~r--~~--d~v~lv~Fs~~--~~~~~~~~~-~~l~ 427 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCGDV----AGVPGLTPNMAAAAM--SLIALR--TE--PDALTMGFAEQ--FRPLGITPR-DTLE 427 (535)
T ss_dssp CCSEEEEEECCSGGGGSCCG----GGCTTCCHHHHHHHH--HHHHHH--HS--SEEEEEEEBSS--EEECCCCTT-CCHH
T ss_pred CCceEEEEEECCccccCCCC----CCCCcccHHHHHHHH--HHHHcC--cC--CceEEEEECCc--ceEcCCCcc-hhHH
Confidence 36789999999998873 21 112346777766422 244433 12 27889999874 322256655 5566
Q ss_pred HHhhccccccccCCCChhHHHHHH
Q 025034 101 TAVRGISATSACGQADLTHLFKLA 124 (259)
Q Consensus 101 ~aL~~L~~~~~~~~~DL~~LF~~i 124 (259)
..|+.|.... .+.=|+..-++.+
T Consensus 428 ~~l~~l~~~~-~ggTdi~~~l~~a 450 (535)
T 2nvo_A 428 SAMQKAQSVS-FGGTDCAQPILWA 450 (535)
T ss_dssp HHHHHTCCSS-BCCCCTTHHHHHH
T ss_pred HHHHHHhhCC-CCCccHHHHHHHH
Confidence 6777766432 3445666655544
No 40
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=51.25 E-value=32 Score=34.97 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=41.2
Q ss_pred ccccCCCCCCCccEEEEEeCChhhhh-hhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceee
Q 025034 13 RFTLPPMRISNEDIIFCVDVDAESLV-EMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWL 88 (259)
Q Consensus 13 ~~~l~p~~~~pEkIIfCiD~~~E~~~-~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl 88 (259)
+|.++|+ .|=-.||+||++.+... .+ |..++++|..-+. .+-=+++.+.||+|.+..+...
T Consensus 152 ~y~~r~p--~pp~yvFvIDvs~~a~~~g~------------l~~~~~sl~~~L~-~lp~~~~~~VG~ITfd~~vh~y 213 (751)
T 3eh1_A 152 DYMLRPP--QPAVYLFVLDVSHNAVEAGY------------LTILCQSLLENLD-KLPGDSRTRIGFMTFDSTIHFY 213 (751)
T ss_dssp GGCSSSC--CCCEEEEEEECSHHHHHHTH------------HHHHHHHHHHHTT-TSSCCTTCEEEEEEESSSEEEE
T ss_pred hhhcCCC--CCcEEEEEEEccHhhhhhhH------------HHHHHHHHHHHHH-hcCCCcCcEEEEEEeCCEEEEE
Confidence 3555553 46678999999986542 22 6777777776663 2233567799999998876654
No 41
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=43.83 E-value=37 Score=35.42 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=37.6
Q ss_pred CCccEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC---CCccEEEEEecccceee
Q 025034 22 SNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN---PDHRFAFVTLAKTASWL 88 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~---p~HeFAl~~L~dsasWl 88 (259)
.|=-.|||||++.+... - .-|..++++|..-+. .+- ++.++||+|.+.++..+
T Consensus 302 ~ppvyvFvIDvS~~av~-~----------g~l~~l~~sI~~~L~---~LP~~~~~~~VGlITFds~Vh~y 357 (926)
T 1m2v_B 302 PPATYCFLIDVSQSSIK-S----------GLLATTINTLLQNLD---SIPNHDERTRISILCVDNAIHYF 357 (926)
T ss_dssp CCCBEEEEEECSHHHHH-S----------CHHHHHHHHHHHTTT---TSCCTTSCCEECEEEESSSEEEE
T ss_pred CCcEEEEEEECCHHHHh-h----------hHHHHHHHHHHHHHH---hCCCCCCCcEEEEEEECCEEEEE
Confidence 45678999999987531 0 236777877777653 232 37899999998887666
No 42
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=35.00 E-value=1.1e+02 Score=22.23 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=35.4
Q ss_pred cEEEEEeCChhhhhhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCCCCccEEEEEecccceeeecccCCCHHHHHHHh
Q 025034 25 DIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAV 103 (259)
Q Consensus 25 kIIfCiD~~~E~~~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~p~HeFAl~~L~dsasWl~~~FTsd~~~i~~aL 103 (259)
||||-|| +.|.. ...|+.+...+.. .+..+..++..++.+.++.++ ++..+.+..|
T Consensus 2 kvv~~v~-d~~~~------------~~al~~~~n~~~~--------~~~~~v~vv~~g~gv~~~~~~--~~~~~~i~~l 57 (108)
T 2pd2_A 2 KVVVQIK-DFDKV------------PQALRSVINLYND--------IKDAEIEVVLHQSAIKALLKD--SDTRSIIEDL 57 (108)
T ss_dssp EEEEEEC-CGGGH------------HHHHHHHHHHHHH--------STTCEEEEEECGGGGGGGBTT--CTTHHHHHHH
T ss_pred eEEEEeC-ChHHH------------HHHHHHHHHHHhh--------CCCCeEEEEEcChHHHHHHcC--chHHHHHHHH
Confidence 6788888 43311 1346666655543 568999999999998888755 3444444444
No 43
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=32.72 E-value=92 Score=31.64 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=41.8
Q ss_pred CCcccc--CCCCCCCccEEEEEeCChhhh-hhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-------CCccEEEEE
Q 025034 11 AGRFTL--PPMRISNEDIIFCVDVDAESL-VEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-------PDHRFAFVT 80 (259)
Q Consensus 11 ~~~~~l--~p~~~~pEkIIfCiD~~~E~~-~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-------p~HeFAl~~ 80 (259)
+.+|.+ +|+ .|=-.+|+||++.+.- +.+ +..++++|..-+. .+- ++.+.||+|
T Consensus 161 ~~eY~~~~~~p--~pp~y~FvIDvs~~av~sg~------------l~~~~~si~~~L~---~lp~~~~~~~~~~~VG~IT 223 (766)
T 3eh2_A 161 TVDYCKNNKFP--SPPAFIFMIDVSYNAIRTGL------------VRLLCEELKSLLD---FLPREGGAEESAIRVGFVT 223 (766)
T ss_dssp CGGGSGGGSCC--CCCEEEEEEECSHHHHHTTH------------HHHHHHHHHHHGG---GCCCCSSCSSCCCEEEEEE
T ss_pred CHhhccCCCCC--CCCEEEEEEECchhhccchH------------HHHHHHHHHHHHH---hCCcccccCCccceEEEEE
Confidence 356776 332 3557899999998743 122 7778888777765 233 347899999
Q ss_pred ecccceee
Q 025034 81 LAKTASWL 88 (259)
Q Consensus 81 L~dsasWl 88 (259)
.+.++...
T Consensus 224 fd~~vh~y 231 (766)
T 3eh2_A 224 YNKVLHFY 231 (766)
T ss_dssp ESSSEEEE
T ss_pred eCCEEEEE
Confidence 98876665
No 44
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=29.95 E-value=1.1e+02 Score=31.12 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=36.8
Q ss_pred CCccEEEEEeCChhhh-hhhhccCCCCCccCHhHHHHHHHHHHHHhhhcCC-------CCccEEEEEecccceee
Q 025034 22 SNEDIIFCVDVDAESL-VEMKSTGFNGKPITRLDAMKQAILLFVNSKLSIN-------PDHRFAFVTLAKTASWL 88 (259)
Q Consensus 22 ~pEkIIfCiD~~~E~~-~~~K~~~~~~~~~trL~~iK~aI~~FV~~K~~i~-------p~HeFAl~~L~dsasWl 88 (259)
.|=-.+|+||++.+.- +. -+..++++|..-+. .+- ++.+.||+|.+.++...
T Consensus 176 ~pp~y~FvIDvs~~av~sg------------~l~~~~~sl~~~L~---~lP~~~~~~~~~~~VG~ITfd~~vh~y 235 (770)
T 3efo_B 176 NPPAFIFMIDVSYSNIKNG------------LVKLICEELKTMLE---KIPKEEQEETSAIRVGFITYNKVLHFF 235 (770)
T ss_dssp CCCEEEEEEECSHHHHHTT------------HHHHHHHHHHHHGG---GCCCCTTSSSCSCEEEEEEESSSEEEE
T ss_pred CCcEEEEEEEcchhhccch------------HHHHHHHHHHHHHH---hCCccccccCccceEEEEEeCCEEEEE
Confidence 3558899999998753 11 27778888777764 232 34799999998876665
No 45
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.09 E-value=45 Score=27.12 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=8.0
Q ss_pred EEEEEEeecC
Q 025034 138 LRVILIYCRS 147 (259)
Q Consensus 138 vRVILiY~RS 147 (259)
+||+|+|+--
T Consensus 27 vrvvllysdq 36 (162)
T 2l82_A 27 VRVVLLYSDQ 36 (162)
T ss_dssp CEEEEEECCS
T ss_pred eEEEEEecCc
Confidence 7999999754
Done!