Query 025035
Match_columns 259
No_of_seqs 277 out of 2466
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1271 Methyltransferases [Ge 99.9 1.7E-25 3.6E-30 184.8 13.5 142 81-248 5-152 (227)
2 COG2226 UbiE Methylase involve 99.6 2.4E-15 5.2E-20 131.3 10.4 127 51-243 4-134 (238)
3 PF01209 Ubie_methyltran: ubiE 99.5 2.4E-13 5.2E-18 118.9 9.8 80 164-243 47-131 (233)
4 KOG1540 Ubiquinone biosynthesi 99.4 2.8E-13 6.1E-18 117.8 8.8 123 42-230 43-179 (296)
5 PF13847 Methyltransf_31: Meth 99.4 2.5E-12 5.4E-17 104.7 10.6 80 164-243 3-88 (152)
6 COG2227 UbiG 2-polyprenyl-3-me 99.4 4.7E-13 1E-17 115.9 6.4 80 163-244 58-141 (243)
7 PF12847 Methyltransf_18: Meth 99.4 4.9E-12 1.1E-16 97.0 10.8 73 164-236 1-78 (112)
8 PRK11207 tellurite resistance 99.4 1.9E-12 4.1E-17 110.3 7.8 76 164-240 30-107 (197)
9 PF03848 TehB: Tellurite resis 99.3 8.2E-12 1.8E-16 105.9 10.3 75 163-239 29-105 (192)
10 TIGR03840 TMPT_Se_Te thiopurin 99.3 4.4E-12 9.6E-17 109.5 6.7 73 164-237 34-122 (213)
11 KOG1270 Methyltransferases [Co 99.3 3.6E-12 7.7E-17 111.5 4.0 77 164-241 89-172 (282)
12 PLN02585 magnesium protoporphy 99.3 4.3E-11 9.2E-16 109.1 11.1 79 164-243 144-228 (315)
13 TIGR00477 tehB tellurite resis 99.2 2.4E-11 5.1E-16 103.4 7.5 75 164-240 30-106 (195)
14 PRK05785 hypothetical protein; 99.2 5.5E-11 1.2E-15 103.5 9.5 72 164-243 51-125 (226)
15 PLN02233 ubiquinone biosynthes 99.2 1.3E-10 2.8E-15 103.3 11.7 79 164-242 73-159 (261)
16 PRK12335 tellurite resistance 99.2 8.9E-11 1.9E-15 105.6 9.4 75 164-240 120-196 (287)
17 TIGR03587 Pse_Me-ase pseudamin 99.2 9.2E-11 2E-15 100.7 9.0 74 163-241 42-119 (204)
18 PRK15451 tRNA cmo(5)U34 methyl 99.2 8.5E-11 1.8E-15 103.5 8.8 78 163-240 55-137 (247)
19 PRK00107 gidB 16S rRNA methylt 99.2 1.2E-10 2.7E-15 98.6 9.3 72 164-235 45-119 (187)
20 PRK13255 thiopurine S-methyltr 99.2 8.8E-11 1.9E-15 101.8 8.0 73 164-237 37-125 (218)
21 TIGR00138 gidB 16S rRNA methyl 99.2 1.1E-10 2.5E-15 98.3 8.3 73 164-236 42-117 (181)
22 PF02353 CMAS: Mycolic acid cy 99.1 1.4E-10 2.9E-15 103.9 8.5 78 163-241 61-141 (273)
23 TIGR02021 BchM-ChlM magnesium 99.1 1.7E-10 3.7E-15 99.4 8.8 78 163-241 54-133 (219)
24 PF13649 Methyltransf_25: Meth 99.1 1.3E-10 2.8E-15 88.1 7.1 66 168-234 1-73 (101)
25 COG2230 Cfa Cyclopropane fatty 99.1 1.4E-10 3.1E-15 103.4 8.2 79 163-242 71-152 (283)
26 PRK07580 Mg-protoporphyrin IX 99.1 2.4E-10 5.3E-15 98.6 8.7 78 163-241 62-141 (230)
27 PLN02244 tocopherol O-methyltr 99.1 3.6E-10 7.7E-15 104.2 10.0 78 163-240 117-199 (340)
28 TIGR02752 MenG_heptapren 2-hep 99.1 4.8E-10 1E-14 97.1 10.2 78 163-240 44-126 (231)
29 PLN02396 hexaprenyldihydroxybe 99.1 1.7E-10 3.7E-15 105.5 7.7 79 163-242 130-213 (322)
30 PRK11036 putative S-adenosyl-L 99.1 1.7E-10 3.7E-15 101.9 7.5 76 164-240 44-124 (255)
31 COG2263 Predicted RNA methylas 99.1 4.5E-10 9.8E-15 94.2 9.5 71 163-234 44-114 (198)
32 PF05175 MTS: Methyltransferas 99.1 8E-10 1.7E-14 92.0 10.4 77 164-240 31-110 (170)
33 PRK13256 thiopurine S-methyltr 99.1 3.1E-10 6.7E-15 98.7 7.9 75 164-239 43-135 (226)
34 PF08241 Methyltransf_11: Meth 99.1 4.7E-10 1E-14 82.6 7.8 70 169-241 1-73 (95)
35 PF05724 TPMT: Thiopurine S-me 99.0 4E-10 8.6E-15 97.7 6.6 77 164-241 37-129 (218)
36 TIGR00740 methyltransferase, p 99.0 9.7E-10 2.1E-14 96.1 9.0 77 164-240 53-134 (239)
37 COG2890 HemK Methylase of poly 99.0 9.7E-10 2.1E-14 98.7 9.0 70 167-236 113-184 (280)
38 PRK11873 arsM arsenite S-adeno 99.0 1.6E-09 3.6E-14 96.3 10.3 81 163-243 76-161 (272)
39 TIGR00537 hemK_rel_arch HemK-r 99.0 1.9E-09 4.1E-14 90.1 9.9 75 163-239 18-93 (179)
40 PRK15068 tRNA mo(5)U34 methylt 99.0 1.1E-09 2.5E-14 100.1 9.2 78 163-240 121-201 (322)
41 PRK00121 trmB tRNA (guanine-N( 99.0 1.4E-09 3E-14 93.1 8.7 72 164-235 40-118 (202)
42 PRK10258 biotin biosynthesis p 99.0 1E-09 2.2E-14 96.5 7.7 74 164-243 42-118 (251)
43 COG2264 PrmA Ribosomal protein 99.0 1.3E-09 2.9E-14 98.0 8.5 76 163-238 161-239 (300)
44 PRK14103 trans-aconitate 2-met 99.0 1.1E-09 2.4E-14 96.6 7.8 73 164-243 29-104 (255)
45 TIGR02469 CbiT precorrin-6Y C5 99.0 3.5E-09 7.5E-14 82.1 9.5 71 164-234 19-94 (124)
46 PF06325 PrmA: Ribosomal prote 99.0 2E-09 4.4E-14 97.2 9.1 75 163-238 160-235 (295)
47 PRK08287 cobalt-precorrin-6Y C 99.0 2.4E-09 5.1E-14 90.2 8.9 73 163-235 30-104 (187)
48 PRK01683 trans-aconitate 2-met 99.0 1.8E-09 4E-14 95.1 8.5 75 164-243 31-108 (258)
49 TIGR00080 pimt protein-L-isoas 99.0 3.4E-09 7.3E-14 91.4 9.4 73 163-235 76-153 (215)
50 PRK10909 rsmD 16S rRNA m(2)G96 99.0 2.8E-09 6.2E-14 91.1 8.8 75 163-237 52-130 (199)
51 PTZ00098 phosphoethanolamine N 98.9 6.1E-09 1.3E-13 92.7 10.6 77 163-241 51-131 (263)
52 PRK13942 protein-L-isoaspartat 98.9 6.2E-09 1.4E-13 89.7 10.1 73 163-235 75-152 (212)
53 PF13659 Methyltransf_26: Meth 98.9 3.2E-09 6.9E-14 82.0 7.1 74 165-238 1-80 (117)
54 PRK00517 prmA ribosomal protei 98.9 4.2E-09 9.1E-14 92.9 8.7 70 163-237 118-188 (250)
55 TIGR00406 prmA ribosomal prote 98.9 6.1E-09 1.3E-13 93.9 9.9 76 163-238 158-235 (288)
56 PRK14966 unknown domain/N5-glu 98.9 5.7E-09 1.2E-13 98.0 9.8 73 163-236 250-327 (423)
57 TIGR00452 methyltransferase, p 98.9 4.8E-09 1E-13 95.6 8.7 78 163-240 120-201 (314)
58 PRK03522 rumB 23S rRNA methylu 98.9 3.3E-09 7.2E-14 96.7 7.7 71 164-235 173-247 (315)
59 PRK14967 putative methyltransf 98.9 7E-09 1.5E-13 89.9 9.4 72 164-236 36-109 (223)
60 smart00650 rADc Ribosomal RNA 98.9 4.9E-09 1.1E-13 87.0 8.0 76 164-242 13-91 (169)
61 TIGR00091 tRNA (guanine-N(7)-) 98.9 4.4E-09 9.5E-14 89.4 7.8 62 164-225 16-78 (194)
62 PRK13944 protein-L-isoaspartat 98.9 1.1E-08 2.3E-13 87.7 9.8 74 164-237 72-151 (205)
63 COG4106 Tam Trans-aconitate me 98.9 1.5E-09 3.3E-14 92.7 4.4 76 164-244 30-108 (257)
64 TIGR03533 L3_gln_methyl protei 98.9 7.6E-09 1.6E-13 93.1 9.2 72 164-235 121-196 (284)
65 COG4123 Predicted O-methyltran 98.9 4.8E-09 1E-13 92.1 7.6 73 164-236 44-123 (248)
66 PLN02336 phosphoethanolamine N 98.9 8.6E-09 1.9E-13 98.8 9.9 77 163-240 265-345 (475)
67 PRK06202 hypothetical protein; 98.9 4.6E-09 1E-13 91.4 7.2 77 164-243 60-144 (232)
68 PRK15001 SAM-dependent 23S rib 98.9 1.5E-08 3.3E-13 94.5 10.8 76 165-240 229-310 (378)
69 smart00828 PKS_MT Methyltransf 98.9 8.1E-09 1.8E-13 89.0 8.2 74 166-239 1-78 (224)
70 PRK07402 precorrin-6B methylas 98.8 1.1E-08 2.4E-13 86.8 8.4 62 163-224 39-101 (196)
71 TIGR02081 metW methionine bios 98.8 1.2E-08 2.6E-13 86.4 8.5 73 163-242 12-89 (194)
72 TIGR03534 RF_mod_PrmC protein- 98.8 2.3E-08 5E-13 87.3 9.6 73 165-237 88-163 (251)
73 PRK00312 pcm protein-L-isoaspa 98.8 2.8E-08 6E-13 85.3 9.8 72 163-235 77-151 (212)
74 COG2242 CobL Precorrin-6B meth 98.8 2.3E-08 4.9E-13 84.0 8.9 63 163-225 33-96 (187)
75 PF05401 NodS: Nodulation prot 98.8 1.5E-08 3.3E-13 85.8 7.7 72 166-240 45-118 (201)
76 PRK14896 ksgA 16S ribosomal RN 98.8 2.1E-08 4.6E-13 88.9 9.0 76 163-241 28-104 (258)
77 TIGR00536 hemK_fam HemK family 98.8 2E-08 4.3E-13 90.3 8.9 70 166-235 116-189 (284)
78 PRK13168 rumA 23S rRNA m(5)U19 98.8 1.7E-08 3.6E-13 96.3 8.8 61 163-224 296-356 (443)
79 PRK11805 N5-glutamine S-adenos 98.8 1.9E-08 4.1E-13 91.5 8.7 70 166-235 135-208 (307)
80 TIGR02072 BioC biotin biosynth 98.8 1.9E-08 4.1E-13 86.6 8.1 76 164-243 34-113 (240)
81 PRK06922 hypothetical protein; 98.8 2E-08 4.4E-13 98.5 9.1 78 163-241 417-500 (677)
82 PRK14968 putative methyltransf 98.8 3.7E-08 7.9E-13 82.1 9.4 71 164-235 23-97 (188)
83 KOG1499 Protein arginine N-met 98.8 1.3E-08 2.8E-13 92.6 6.9 74 163-237 59-136 (346)
84 PRK01544 bifunctional N5-gluta 98.8 1.8E-08 3.9E-13 97.5 8.2 71 165-235 139-213 (506)
85 PTZ00338 dimethyladenosine tra 98.8 2.2E-08 4.7E-13 90.6 8.1 81 163-244 35-117 (294)
86 PRK15128 23S rRNA m(5)C1962 me 98.8 2.2E-08 4.7E-13 94.1 8.3 75 161-235 217-300 (396)
87 PRK00216 ubiE ubiquinone/menaq 98.8 3.4E-08 7.5E-13 85.2 8.9 78 164-241 51-134 (239)
88 PRK09489 rsmC 16S ribosomal RN 98.8 3.4E-08 7.4E-13 91.1 9.4 75 165-240 197-273 (342)
89 PF13489 Methyltransf_23: Meth 98.8 2.4E-08 5.3E-13 80.7 7.5 70 163-243 21-93 (161)
90 PLN02490 MPBQ/MSBQ methyltrans 98.8 2.7E-08 5.8E-13 91.6 8.6 74 164-240 113-190 (340)
91 PF08242 Methyltransf_12: Meth 98.8 9.1E-10 2E-14 82.9 -0.9 74 169-242 1-80 (99)
92 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.8E-08 3.9E-13 101.1 7.9 76 160-235 534-615 (702)
93 TIGR00095 RNA methyltransferas 98.8 2.8E-08 6.1E-13 84.3 8.0 74 151-224 36-110 (189)
94 PRK11705 cyclopropane fatty ac 98.8 1.7E-08 3.7E-13 94.5 7.2 75 163-240 166-241 (383)
95 PRK00377 cbiT cobalt-precorrin 98.7 3.9E-08 8.4E-13 83.7 8.6 72 163-234 39-117 (198)
96 PRK00274 ksgA 16S ribosomal RN 98.7 3E-08 6.4E-13 88.7 7.7 75 163-241 41-118 (272)
97 PRK05134 bifunctional 3-demeth 98.7 7.5E-08 1.6E-12 83.5 9.9 71 164-236 48-122 (233)
98 TIGR01177 conserved hypothetic 98.7 4.2E-08 9.1E-13 90.0 8.6 72 163-235 181-255 (329)
99 PRK08317 hypothetical protein; 98.7 8.4E-08 1.8E-12 82.4 9.8 77 163-240 18-99 (241)
100 PRK09328 N5-glutamine S-adenos 98.7 6.3E-08 1.4E-12 85.9 9.1 73 163-235 107-182 (275)
101 TIGR03704 PrmC_rel_meth putati 98.7 7.1E-08 1.5E-12 85.3 9.1 69 165-236 87-161 (251)
102 PRK13943 protein-L-isoaspartat 98.7 6.4E-08 1.4E-12 88.6 9.0 73 163-235 79-156 (322)
103 PRK04148 hypothetical protein; 98.7 1.1E-07 2.5E-12 76.1 9.3 81 164-252 16-113 (134)
104 COG2518 Pcm Protein-L-isoaspar 98.7 9.5E-08 2.1E-12 81.8 9.4 70 163-233 71-143 (209)
105 PRK11088 rrmA 23S rRNA methylt 98.7 5.7E-08 1.2E-12 86.7 8.3 67 164-235 85-158 (272)
106 PRK14121 tRNA (guanine-N(7)-)- 98.7 6.8E-08 1.5E-12 90.1 9.1 62 164-225 122-184 (390)
107 PRK04266 fibrillarin; Provisio 98.7 8.9E-08 1.9E-12 83.5 9.2 60 163-224 71-131 (226)
108 COG2813 RsmC 16S RNA G1207 met 98.7 9.8E-08 2.1E-12 85.7 9.6 80 165-244 159-240 (300)
109 TIGR02085 meth_trns_rumB 23S r 98.7 4.8E-08 1E-12 91.2 7.8 69 164-233 233-305 (374)
110 PF01135 PCMT: Protein-L-isoas 98.7 1.3E-07 2.8E-12 81.5 9.6 72 163-234 71-147 (209)
111 PF08003 Methyltransf_9: Prote 98.7 1.1E-07 2.4E-12 85.5 9.4 76 163-238 114-192 (315)
112 PF07021 MetW: Methionine bios 98.7 4.1E-08 8.9E-13 82.9 6.1 69 163-238 12-86 (193)
113 TIGR01983 UbiG ubiquinone bios 98.7 8.6E-08 1.9E-12 82.4 8.2 74 164-238 45-122 (224)
114 PLN02781 Probable caffeoyl-CoA 98.7 9E-08 1.9E-12 83.8 8.3 81 156-236 60-152 (234)
115 KOG2361 Predicted methyltransf 98.6 3.7E-08 8.1E-13 85.5 5.3 98 94-226 35-135 (264)
116 TIGR00755 ksgA dimethyladenosi 98.6 8E-08 1.7E-12 84.9 7.5 77 163-242 28-108 (253)
117 TIGR02716 C20_methyl_CrtF C-20 98.6 1.4E-07 3E-12 85.5 9.3 76 163-239 148-226 (306)
118 PF03291 Pox_MCEL: mRNA cappin 98.6 2.5E-07 5.4E-12 85.0 11.0 80 164-243 62-160 (331)
119 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 1.8E-07 3.8E-12 79.9 9.3 78 164-243 39-121 (223)
120 PRK14904 16S rRNA methyltransf 98.6 1.4E-07 3.1E-12 89.9 9.5 72 163-234 249-324 (445)
121 TIGR00479 rumA 23S rRNA (uraci 98.6 8.6E-08 1.9E-12 91.0 7.8 60 164-224 292-351 (431)
122 PLN02672 methionine S-methyltr 98.6 1.1E-07 2.3E-12 98.5 8.8 73 164-236 118-211 (1082)
123 PHA03411 putative methyltransf 98.6 1.3E-07 2.8E-12 84.4 8.1 70 165-239 65-137 (279)
124 PRK14902 16S rRNA methyltransf 98.6 1.8E-07 3.9E-12 89.2 9.5 73 163-235 249-327 (444)
125 PLN02336 phosphoethanolamine N 98.6 1.3E-07 2.8E-12 90.7 8.5 75 164-241 37-116 (475)
126 KOG1975 mRNA cap methyltransfe 98.6 1.4E-07 3E-12 85.1 8.0 98 125-243 99-211 (389)
127 TIGR00446 nop2p NOL1/NOP2/sun 98.6 1.5E-07 3.2E-12 83.9 8.2 72 163-234 70-146 (264)
128 PLN03075 nicotianamine synthas 98.6 2.2E-07 4.7E-12 83.9 9.2 74 164-237 123-204 (296)
129 KOG2904 Predicted methyltransf 98.6 2.2E-07 4.7E-12 82.1 8.6 57 164-220 148-206 (328)
130 TIGR03438 probable methyltrans 98.6 1.5E-07 3.3E-12 85.3 7.8 61 164-224 63-126 (301)
131 PRK14903 16S rRNA methyltransf 98.6 2.4E-07 5.2E-12 88.1 9.1 74 161-234 234-313 (431)
132 PHA03412 putative methyltransf 98.6 1.4E-07 3E-12 82.4 6.9 70 165-239 50-125 (241)
133 PRK14901 16S rRNA methyltransf 98.5 2.8E-07 6.1E-12 87.6 9.0 72 163-234 251-331 (434)
134 KOG3420 Predicted RNA methylas 98.5 9.5E-08 2.1E-12 77.1 4.7 68 163-231 47-117 (185)
135 cd02440 AdoMet_MTases S-adenos 98.5 4.2E-07 9.1E-12 66.3 7.9 73 167-239 1-77 (107)
136 PF03602 Cons_hypoth95: Conser 98.5 1.2E-07 2.6E-12 80.1 5.4 91 146-236 23-122 (183)
137 KOG1541 Predicted protein carb 98.5 2.6E-07 5.7E-12 79.4 7.4 62 164-231 50-115 (270)
138 PRK10901 16S rRNA methyltransf 98.5 3.9E-07 8.5E-12 86.5 9.4 71 163-234 243-319 (427)
139 TIGR02143 trmA_only tRNA (urac 98.5 2.3E-07 5E-12 86.0 7.2 59 165-224 198-256 (353)
140 PRK11727 23S rRNA mA1618 methy 98.5 1.1E-06 2.3E-11 80.4 11.4 78 164-241 114-202 (321)
141 PRK11188 rrmJ 23S rRNA methylt 98.5 4.3E-07 9.3E-12 78.2 7.7 67 163-240 50-129 (209)
142 COG2265 TrmA SAM-dependent met 98.5 6.9E-07 1.5E-11 84.8 9.3 62 164-226 293-354 (432)
143 PRK05031 tRNA (uracil-5-)-meth 98.5 3.6E-07 7.8E-12 85.0 7.3 58 166-224 208-265 (362)
144 PF02390 Methyltransf_4: Putat 98.4 4.9E-07 1.1E-11 77.1 7.0 59 166-224 19-78 (195)
145 PRK04457 spermidine synthase; 98.4 7.9E-07 1.7E-11 79.2 8.4 72 164-235 66-143 (262)
146 KOG1500 Protein arginine N-met 98.4 6.6E-07 1.4E-11 81.2 7.7 73 163-236 176-251 (517)
147 COG1092 Predicted SAM-dependen 98.4 4.8E-07 1E-11 84.6 6.8 78 157-234 210-296 (393)
148 smart00138 MeTrc Methyltransfe 98.4 4.7E-07 1E-11 80.7 6.4 76 164-239 99-214 (264)
149 PTZ00146 fibrillarin; Provisio 98.4 9.7E-07 2.1E-11 79.5 8.0 73 163-237 131-211 (293)
150 PRK00811 spermidine synthase; 98.4 1.3E-06 2.9E-11 78.6 8.9 75 164-238 76-160 (283)
151 PF09445 Methyltransf_15: RNA 98.4 7E-07 1.5E-11 73.9 6.5 58 167-225 2-60 (163)
152 PF02475 Met_10: Met-10+ like- 98.4 1.8E-06 3.8E-11 74.0 9.0 66 161-226 98-165 (200)
153 KOG2730 Methylase [General fun 98.4 7.2E-07 1.5E-11 76.6 6.1 107 93-225 47-155 (263)
154 PF01596 Methyltransf_3: O-met 98.4 4.2E-07 9E-12 78.2 4.4 76 161-236 42-129 (205)
155 KOG4300 Predicted methyltransf 98.4 2.9E-06 6.4E-11 72.3 9.4 68 166-233 78-150 (252)
156 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.1E-06 2.4E-11 81.5 6.7 58 166-224 198-255 (352)
157 TIGR00478 tly hemolysin TlyA f 98.3 9.9E-07 2.1E-11 77.0 5.9 40 163-202 74-113 (228)
158 TIGR00438 rrmJ cell division p 98.3 2.2E-06 4.7E-11 72.2 7.8 63 163-236 31-106 (188)
159 COG2520 Predicted methyltransf 98.3 2.1E-06 4.5E-11 78.9 8.0 89 154-252 178-267 (341)
160 PF10672 Methyltrans_SAM: S-ad 98.3 1.8E-06 3.9E-11 77.7 7.0 72 163-234 122-201 (286)
161 TIGR00563 rsmB ribosomal RNA s 98.3 3.7E-06 7.9E-11 79.9 9.1 71 163-233 237-314 (426)
162 PLN02476 O-methyltransferase 98.3 3.2E-06 7E-11 75.8 8.1 72 153-224 107-181 (278)
163 COG0220 Predicted S-adenosylme 98.3 2.2E-06 4.7E-11 74.8 6.8 60 166-225 50-110 (227)
164 COG0742 N6-adenine-specific me 98.3 4.7E-06 1E-10 70.3 8.5 96 143-238 21-124 (187)
165 KOG0820 Ribosomal RNA adenine 98.3 3.6E-06 7.8E-11 74.5 8.0 83 163-246 57-141 (315)
166 PF05185 PRMT5: PRMT5 arginine 98.2 4.9E-06 1.1E-10 79.5 9.0 74 165-238 187-268 (448)
167 PF01170 UPF0020: Putative RNA 98.2 7.4E-06 1.6E-10 68.9 8.5 72 163-234 27-112 (179)
168 COG0030 KsgA Dimethyladenosine 98.2 4.9E-06 1.1E-10 73.7 7.7 80 164-246 30-113 (259)
169 KOG2187 tRNA uracil-5-methyltr 98.2 1.7E-06 3.8E-11 82.3 4.8 62 163-225 382-443 (534)
170 TIGR01444 fkbM_fam methyltrans 98.2 6.4E-06 1.4E-10 65.8 7.4 61 167-227 1-62 (143)
171 TIGR00417 speE spermidine synt 98.2 4.6E-06 9.9E-11 74.5 7.0 74 164-237 72-154 (270)
172 PRK04338 N(2),N(2)-dimethylgua 98.2 3.9E-06 8.4E-11 78.6 6.7 70 165-234 58-131 (382)
173 PF10294 Methyltransf_16: Puta 98.1 8.3E-06 1.8E-10 68.1 7.7 61 163-224 44-108 (173)
174 COG4976 Predicted methyltransf 98.1 1.2E-06 2.5E-11 75.8 1.7 42 165-207 126-167 (287)
175 PLN02366 spermidine synthase 98.1 1.9E-05 4.1E-10 72.0 9.5 75 164-238 91-175 (308)
176 COG4122 Predicted O-methyltran 98.1 1.8E-05 3.8E-10 68.6 8.6 77 159-235 54-139 (219)
177 PRK03612 spermidine synthase; 98.1 9.2E-06 2E-10 79.1 7.5 74 164-237 297-382 (521)
178 COG2519 GCD14 tRNA(1-methylade 98.0 2.2E-05 4.7E-10 69.0 8.6 75 163-237 93-172 (256)
179 PRK00050 16S rRNA m(4)C1402 me 98.0 1.5E-05 3.3E-10 72.1 7.8 61 163-225 18-80 (296)
180 PLN02589 caffeoyl-CoA O-methyl 98.0 1.1E-05 2.4E-10 71.2 6.2 69 156-224 71-142 (247)
181 PRK01581 speE spermidine synth 98.0 1.2E-05 2.7E-10 74.4 6.5 74 163-236 149-234 (374)
182 KOG3010 Methyltransferase [Gen 98.0 5.2E-06 1.1E-10 72.3 3.6 74 166-240 35-112 (261)
183 PF08704 GCD14: tRNA methyltra 98.0 4.6E-05 1E-09 67.3 9.7 77 162-238 38-123 (247)
184 PF02527 GidB: rRNA small subu 98.0 9.2E-05 2E-09 62.6 11.1 72 167-238 51-125 (184)
185 COG1041 Predicted DNA modifica 97.9 2.4E-05 5.2E-10 71.7 6.9 67 160-227 193-260 (347)
186 KOG3191 Predicted N6-DNA-methy 97.9 4.2E-05 9E-10 64.1 7.4 59 165-224 44-104 (209)
187 PF13679 Methyltransf_32: Meth 97.9 3.4E-05 7.3E-10 62.2 6.0 63 163-225 24-94 (141)
188 COG3897 Predicted methyltransf 97.8 2.4E-05 5.1E-10 66.3 4.6 69 164-233 79-147 (218)
189 TIGR00308 TRM1 tRNA(guanine-26 97.8 3.4E-05 7.3E-10 72.1 6.2 70 166-235 46-121 (374)
190 PF00891 Methyltransf_2: O-met 97.8 7.5E-05 1.6E-09 65.2 7.6 70 164-240 100-170 (241)
191 COG4076 Predicted RNA methylas 97.7 4.5E-05 9.8E-10 64.3 4.6 73 165-238 33-106 (252)
192 COG0116 Predicted N6-adenine-s 97.7 0.00014 3E-09 67.7 7.9 72 163-234 190-305 (381)
193 COG0357 GidB Predicted S-adeno 97.7 0.00031 6.7E-09 60.7 9.5 72 165-236 68-143 (215)
194 PRK01544 bifunctional N5-gluta 97.7 0.00012 2.5E-09 71.2 7.5 61 164-224 347-408 (506)
195 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00014 2.9E-09 64.7 7.2 61 164-227 30-90 (262)
196 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00016 3.5E-09 72.9 8.6 72 164-235 190-310 (702)
197 PLN02823 spermine synthase 97.6 0.00017 3.7E-09 66.5 7.4 74 164-237 103-185 (336)
198 KOG2899 Predicted methyltransf 97.6 9E-05 1.9E-09 64.8 5.1 47 163-209 57-104 (288)
199 PF04816 DUF633: Family of unk 97.6 0.0003 6.4E-09 60.5 8.3 57 168-224 1-59 (205)
200 KOG2352 Predicted spermine/spe 97.6 0.00027 5.9E-09 67.2 8.4 76 167-247 51-129 (482)
201 PF12147 Methyltransf_20: Puta 97.6 0.00045 9.7E-09 62.0 9.1 62 164-225 135-200 (311)
202 KOG2940 Predicted methyltransf 97.5 8.2E-05 1.8E-09 64.6 3.8 79 164-244 72-153 (325)
203 PRK11933 yebU rRNA (cytosine-C 97.5 0.00048 1E-08 66.3 8.8 71 163-233 112-188 (470)
204 PF08123 DOT1: Histone methyla 97.5 0.00047 1E-08 59.3 7.8 64 163-226 41-114 (205)
205 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.0014 2.9E-08 59.4 10.6 72 164-235 46-132 (311)
206 PF05971 Methyltransf_10: Prot 97.3 0.0027 5.9E-08 57.5 10.9 56 165-221 103-162 (299)
207 PRK11760 putative 23S rRNA C24 97.3 0.00061 1.3E-08 62.7 6.4 70 163-240 210-282 (357)
208 PRK10742 putative methyltransf 97.2 0.0018 3.8E-08 57.2 8.8 70 167-237 91-173 (250)
209 PHA01634 hypothetical protein 97.2 0.0016 3.4E-08 51.7 7.4 50 163-212 27-76 (156)
210 PF01564 Spermine_synth: Sperm 97.1 0.0016 3.5E-08 57.5 7.5 75 164-238 76-160 (246)
211 COG0421 SpeE Spermidine syntha 97.1 0.0016 3.6E-08 58.6 7.4 75 165-239 77-160 (282)
212 PF09243 Rsm22: Mitochondrial 97.1 0.00094 2E-08 59.9 5.7 48 163-210 32-81 (274)
213 TIGR02987 met_A_Alw26 type II 97.1 0.001 2.2E-08 64.8 6.4 57 165-221 32-97 (524)
214 PLN02232 ubiquinone biosynthes 96.9 0.0015 3.2E-08 53.7 5.1 52 191-242 1-58 (160)
215 COG3963 Phospholipid N-methylt 96.9 0.0024 5.2E-08 53.1 6.0 68 164-236 48-125 (194)
216 TIGR03439 methyl_EasF probable 96.9 0.0091 2E-07 54.8 10.4 62 163-224 75-143 (319)
217 KOG1661 Protein-L-isoaspartate 96.9 0.0031 6.7E-08 54.2 6.8 63 163-225 81-156 (237)
218 PF07091 FmrO: Ribosomal RNA m 96.9 0.0049 1.1E-07 54.4 8.2 74 159-233 100-176 (251)
219 PF05891 Methyltransf_PK: AdoM 96.8 0.0022 4.7E-08 55.5 5.3 79 164-242 55-137 (218)
220 KOG1663 O-methyltransferase [S 96.8 0.0026 5.6E-08 55.3 5.7 64 161-224 70-136 (237)
221 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.004 8.6E-08 56.1 7.0 73 163-235 84-163 (283)
222 PF05219 DREV: DREV methyltran 96.8 0.004 8.7E-08 55.2 6.8 64 164-234 94-157 (265)
223 KOG1501 Arginine N-methyltrans 96.7 0.0026 5.7E-08 60.0 5.6 59 166-224 68-127 (636)
224 PF06080 DUF938: Protein of un 96.7 0.0017 3.7E-08 55.6 3.8 79 167-245 28-119 (204)
225 COG0500 SmtA SAM-dependent met 96.7 0.01 2.2E-07 44.7 7.7 66 168-234 52-125 (257)
226 TIGR00006 S-adenosyl-methyltra 96.6 0.0091 2E-07 54.4 7.8 62 163-225 19-81 (305)
227 PRK00536 speE spermidine synth 96.6 0.0093 2E-07 53.2 7.8 72 163-236 71-147 (262)
228 KOG2915 tRNA(1-methyladenosine 96.5 0.021 4.5E-07 51.0 9.2 75 162-236 103-185 (314)
229 COG0144 Sun tRNA and rRNA cyto 96.4 0.021 4.6E-07 53.1 9.2 68 158-225 150-220 (355)
230 COG0293 FtsJ 23S rRNA methylas 96.2 0.017 3.7E-07 49.6 6.9 65 163-238 44-121 (205)
231 PRK11524 putative methyltransf 96.2 0.012 2.6E-07 52.9 6.3 55 154-209 197-252 (284)
232 COG2521 Predicted archaeal met 96.1 0.0017 3.7E-08 56.7 0.4 81 163-248 133-220 (287)
233 KOG4058 Uncharacterized conser 96.0 0.0069 1.5E-07 49.4 3.6 79 149-227 55-136 (199)
234 PF01555 N6_N4_Mtase: DNA meth 96.0 0.0098 2.1E-07 50.4 4.8 42 163-205 190-231 (231)
235 PF07757 AdoMet_MTase: Predict 96.0 0.0057 1.2E-07 47.1 2.8 33 164-197 58-90 (112)
236 PF01728 FtsJ: FtsJ-like methy 95.9 0.0066 1.4E-07 50.5 3.0 35 164-198 23-59 (181)
237 COG2384 Predicted SAM-dependen 95.8 0.033 7.3E-07 48.2 7.0 61 164-224 16-78 (226)
238 PRK13699 putative methylase; P 95.8 0.028 6E-07 49.1 6.5 56 154-210 152-208 (227)
239 KOG1269 SAM-dependent methyltr 95.7 0.016 3.4E-07 54.1 5.0 89 154-242 100-193 (364)
240 KOG3115 Methyltransferase-like 95.4 0.021 4.5E-07 49.0 4.3 60 165-224 61-128 (249)
241 COG4262 Predicted spermidine s 95.4 0.051 1.1E-06 50.5 7.0 73 164-236 289-373 (508)
242 COG1189 Predicted rRNA methyla 95.4 0.02 4.3E-07 50.2 4.0 41 163-203 78-118 (245)
243 cd00315 Cyt_C5_DNA_methylase C 95.4 0.037 8.1E-07 49.5 6.0 53 167-225 2-54 (275)
244 PF03059 NAS: Nicotianamine sy 95.3 0.053 1.2E-06 48.7 6.8 70 165-234 121-198 (276)
245 KOG1331 Predicted methyltransf 94.9 0.011 2.5E-07 52.9 1.1 70 156-235 37-110 (293)
246 KOG1227 Putative methyltransfe 94.7 0.02 4.3E-07 51.7 2.4 63 163-225 193-257 (351)
247 PF01269 Fibrillarin: Fibrilla 94.6 0.38 8.1E-06 41.9 9.8 75 163-239 72-154 (229)
248 PF02636 Methyltransf_28: Puta 94.6 0.12 2.5E-06 45.6 7.0 82 165-247 19-115 (252)
249 PF04445 SAM_MT: Putative SAM- 94.5 0.2 4.2E-06 44.0 8.0 72 166-238 77-161 (234)
250 PF05148 Methyltransf_8: Hypot 94.4 0.062 1.3E-06 46.4 4.5 59 159-234 67-128 (219)
251 PF07942 N2227: N2227-like pro 94.4 0.084 1.8E-06 47.3 5.5 42 164-206 56-97 (270)
252 PF00145 DNA_methylase: C-5 cy 94.4 0.082 1.8E-06 47.4 5.6 53 167-226 2-54 (335)
253 PF01739 CheR: CheR methyltran 94.2 0.07 1.5E-06 45.6 4.5 75 164-238 31-147 (196)
254 PF04672 Methyltransf_19: S-ad 94.1 0.16 3.5E-06 45.3 6.7 60 166-225 70-133 (267)
255 PF11599 AviRa: RRNA methyltra 94.0 0.071 1.5E-06 46.2 4.1 45 164-208 51-98 (246)
256 KOG3045 Predicted RNA methylas 93.8 0.14 3E-06 45.7 5.6 54 159-231 175-231 (325)
257 KOG3178 Hydroxyindole-O-methyl 93.0 0.2 4.4E-06 46.1 5.6 71 165-240 178-248 (342)
258 PF01861 DUF43: Protein of unk 93.0 0.59 1.3E-05 41.2 8.2 71 163-235 43-119 (243)
259 PF02005 TRM: N2,N2-dimethylgu 92.9 0.32 6.9E-06 45.7 6.9 68 165-232 50-125 (377)
260 KOG3987 Uncharacterized conser 92.8 0.023 5.1E-07 48.9 -0.7 41 164-205 112-152 (288)
261 KOG4589 Cell division protein 92.7 0.17 3.7E-06 43.0 4.2 34 163-196 68-103 (232)
262 COG3129 Predicted SAM-dependen 92.6 0.25 5.4E-06 43.4 5.3 77 164-241 78-166 (292)
263 KOG2078 tRNA modification enzy 92.5 0.11 2.3E-06 49.2 3.1 64 160-224 245-310 (495)
264 KOG2920 Predicted methyltransf 92.5 0.083 1.8E-06 47.4 2.3 39 163-201 115-153 (282)
265 PF01795 Methyltransf_5: MraW 92.4 0.26 5.7E-06 45.0 5.5 62 163-225 19-81 (310)
266 COG1889 NOP1 Fibrillarin-like 92.0 0.79 1.7E-05 39.5 7.4 73 163-237 75-154 (231)
267 KOG2651 rRNA adenine N-6-methy 91.9 0.39 8.5E-06 44.9 6.0 44 163-206 152-195 (476)
268 COG1867 TRM1 N2,N2-dimethylgua 91.6 0.46 9.9E-06 44.3 6.0 60 165-224 53-113 (380)
269 COG0275 Predicted S-adenosylme 91.0 1.4 3.1E-05 40.0 8.5 62 163-225 22-85 (314)
270 PF13578 Methyltransf_24: Meth 90.8 0.13 2.8E-06 38.7 1.4 67 169-236 1-77 (106)
271 KOG0024 Sorbitol dehydrogenase 90.7 0.5 1.1E-05 43.4 5.4 43 163-205 168-212 (354)
272 PRK10611 chemotaxis methyltran 90.7 0.46 9.9E-06 43.0 5.1 42 165-206 116-166 (287)
273 COG1255 Uncharacterized protei 90.5 0.59 1.3E-05 36.5 4.8 52 164-227 13-65 (129)
274 PF03686 UPF0146: Uncharacteri 90.4 0.43 9.2E-06 37.9 4.1 59 164-234 13-76 (127)
275 KOG2798 Putative trehalase [Ca 89.7 0.57 1.2E-05 42.9 4.8 37 165-202 151-187 (369)
276 TIGR00675 dcm DNA-methyltransf 89.6 0.48 1E-05 43.2 4.4 52 168-225 1-52 (315)
277 COG1352 CheR Methylase of chem 89.4 0.55 1.2E-05 42.1 4.5 41 165-205 97-147 (268)
278 PF01234 NNMT_PNMT_TEMT: NNMT/ 89.4 0.4 8.6E-06 42.7 3.6 46 164-209 56-101 (256)
279 COG0286 HsdM Type I restrictio 89.1 2.2 4.8E-05 41.5 8.8 61 164-224 186-252 (489)
280 KOG2671 Putative RNA methylase 89.0 0.42 9.2E-06 44.2 3.5 67 160-227 204-279 (421)
281 PRK08339 short chain dehydroge 88.9 2.6 5.7E-05 36.8 8.5 62 163-225 6-70 (263)
282 PF11968 DUF3321: Putative met 88.8 0.76 1.7E-05 39.8 4.8 67 165-243 52-119 (219)
283 PF11899 DUF3419: Protein of u 88.2 1.5 3.3E-05 41.2 6.8 46 161-207 32-77 (380)
284 COG0270 Dcm Site-specific DNA 88.1 1.4 3E-05 40.5 6.4 56 165-225 3-58 (328)
285 COG1568 Predicted methyltransf 88.1 2 4.3E-05 38.9 7.0 70 163-233 151-226 (354)
286 COG1565 Uncharacterized conser 87.7 2.6 5.7E-05 39.3 7.8 48 164-211 77-133 (370)
287 PF03141 Methyltransf_29: Puta 87.6 0.35 7.6E-06 46.7 2.1 39 166-205 119-160 (506)
288 PRK05867 short chain dehydroge 87.4 3.3 7.1E-05 35.7 8.1 60 164-225 8-70 (253)
289 KOG1201 Hydroxysteroid 17-beta 87.3 2.3 5E-05 38.6 7.0 60 163-225 36-98 (300)
290 PRK10458 DNA cytosine methylas 87.2 1.4 2.9E-05 42.7 5.9 60 165-226 88-147 (467)
291 KOG1709 Guanidinoacetate methy 87.1 2.2 4.7E-05 37.3 6.5 61 163-224 100-160 (271)
292 KOG1122 tRNA and rRNA cytosine 86.9 1.7 3.6E-05 41.3 6.1 63 163-225 240-304 (460)
293 PRK07904 short chain dehydroge 86.5 3.4 7.3E-05 35.9 7.7 62 164-225 7-72 (253)
294 COG1064 AdhP Zn-dependent alco 86.4 0.98 2.1E-05 41.8 4.3 44 162-206 164-209 (339)
295 PF04989 CmcI: Cephalosporin h 86.3 0.82 1.8E-05 39.3 3.5 60 164-225 32-97 (206)
296 PRK07890 short chain dehydroge 86.1 4.8 0.0001 34.5 8.4 60 164-225 4-66 (258)
297 PRK07035 short chain dehydroge 86.0 4.6 9.9E-05 34.6 8.2 60 164-225 7-69 (252)
298 PRK06124 gluconate 5-dehydroge 86.0 4.8 0.0001 34.6 8.4 61 163-225 9-72 (256)
299 PRK05876 short chain dehydroge 85.7 4.5 9.7E-05 35.7 8.1 60 164-225 5-67 (275)
300 PRK06172 short chain dehydroge 85.7 5 0.00011 34.4 8.3 60 164-225 6-68 (253)
301 COG1063 Tdh Threonine dehydrog 85.3 1.6 3.5E-05 40.3 5.3 44 164-207 168-213 (350)
302 PRK07063 short chain dehydroge 84.9 5.5 0.00012 34.3 8.2 61 164-225 6-70 (260)
303 cd08283 FDH_like_1 Glutathione 84.7 2 4.2E-05 40.0 5.6 44 163-206 183-228 (386)
304 PRK06125 short chain dehydroge 84.6 6.2 0.00013 34.0 8.4 60 164-224 6-68 (259)
305 PRK07677 short chain dehydroge 84.4 5.8 0.00013 34.0 8.1 57 166-224 2-61 (252)
306 PRK08703 short chain dehydroge 84.2 6.2 0.00013 33.5 8.1 60 164-224 5-67 (239)
307 PF00106 adh_short: short chai 84.2 4.6 9.9E-05 32.1 6.9 58 167-225 2-64 (167)
308 PRK08213 gluconate 5-dehydroge 84.1 6.1 0.00013 34.0 8.1 59 164-225 11-73 (259)
309 PRK07097 gluconate 5-dehydroge 83.9 6.4 0.00014 34.1 8.2 60 164-225 9-71 (265)
310 PRK07523 gluconate 5-dehydroge 83.8 6.5 0.00014 33.8 8.2 59 164-225 9-71 (255)
311 PRK06194 hypothetical protein; 83.8 5.9 0.00013 34.7 8.0 60 164-225 5-67 (287)
312 PRK08217 fabG 3-ketoacyl-(acyl 83.7 6.8 0.00015 33.2 8.2 59 164-224 4-65 (253)
313 PRK08862 short chain dehydroge 83.6 6 0.00013 33.9 7.8 59 164-224 4-65 (227)
314 PRK07478 short chain dehydroge 83.1 7.6 0.00016 33.3 8.3 60 164-225 5-67 (254)
315 PRK07102 short chain dehydroge 83.0 6.3 0.00014 33.6 7.7 58 166-225 2-63 (243)
316 PRK05786 fabG 3-ketoacyl-(acyl 82.9 7.4 0.00016 32.9 8.1 59 164-225 4-65 (238)
317 PRK05866 short chain dehydroge 82.8 7.2 0.00016 34.7 8.3 60 164-225 39-101 (293)
318 PRK07109 short chain dehydroge 82.8 7.2 0.00016 35.6 8.4 60 164-225 7-69 (334)
319 PF02254 TrkA_N: TrkA-N domain 82.5 4 8.7E-05 30.8 5.7 46 173-225 4-52 (116)
320 PRK07814 short chain dehydroge 82.4 8.4 0.00018 33.4 8.4 59 164-225 9-71 (263)
321 PRK07454 short chain dehydroge 82.1 9.4 0.0002 32.4 8.4 58 165-225 6-67 (241)
322 KOG3201 Uncharacterized conser 82.1 0.72 1.6E-05 38.4 1.3 47 164-210 29-77 (201)
323 PRK06113 7-alpha-hydroxysteroi 81.8 8.7 0.00019 33.0 8.2 60 164-225 10-72 (255)
324 PRK06139 short chain dehydroge 81.6 7.9 0.00017 35.4 8.2 59 164-224 6-67 (330)
325 PRK08945 putative oxoacyl-(acy 81.5 8.6 0.00019 32.8 8.0 59 163-223 10-72 (247)
326 PRK07831 short chain dehydroge 81.3 9.9 0.00022 32.8 8.4 62 163-225 15-81 (262)
327 PRK08589 short chain dehydroge 81.2 9 0.0002 33.5 8.2 59 164-225 5-66 (272)
328 PRK08223 hypothetical protein; 81.0 10 0.00022 34.3 8.5 32 164-195 26-59 (287)
329 TIGR03206 benzo_BadH 2-hydroxy 80.8 10 0.00022 32.2 8.2 58 164-224 2-63 (250)
330 KOG2793 Putative N2,N2-dimethy 80.8 2.3 5E-05 37.7 4.1 36 164-199 86-121 (248)
331 PRK12826 3-ketoacyl-(acyl-carr 80.6 11 0.00024 31.9 8.3 59 164-225 5-67 (251)
332 PRK07062 short chain dehydroge 80.5 11 0.00023 32.6 8.3 61 164-225 7-71 (265)
333 PRK07326 short chain dehydroge 80.3 8.9 0.00019 32.3 7.6 57 164-224 5-65 (237)
334 PRK08643 acetoin reductase; Va 80.0 10 0.00022 32.5 8.0 59 165-225 2-63 (256)
335 PRK08277 D-mannonate oxidoredu 79.7 11 0.00023 32.9 8.1 60 164-225 9-71 (278)
336 PRK06935 2-deoxy-D-gluconate 3 79.7 11 0.00024 32.4 8.2 60 163-225 13-75 (258)
337 PRK07231 fabG 3-ketoacyl-(acyl 79.4 11 0.00024 32.0 7.9 59 164-225 4-65 (251)
338 PRK09072 short chain dehydroge 79.1 11 0.00024 32.5 8.0 59 164-225 4-65 (263)
339 COG0863 DNA modification methy 79.1 5.8 0.00013 35.1 6.3 47 163-210 221-267 (302)
340 PRK13394 3-hydroxybutyrate deh 79.0 12 0.00026 32.0 8.2 59 164-225 6-68 (262)
341 PRK09242 tropinone reductase; 78.9 12 0.00025 32.2 8.1 61 164-225 8-72 (257)
342 PRK12939 short chain dehydroge 78.9 13 0.00028 31.5 8.3 59 164-225 6-68 (250)
343 PRK08340 glucose-1-dehydrogena 78.9 9.1 0.0002 33.0 7.4 55 167-224 2-59 (259)
344 PRK07024 short chain dehydroge 78.5 8.7 0.00019 33.1 7.1 57 166-225 3-62 (257)
345 PRK08085 gluconate 5-dehydroge 78.5 12 0.00027 32.0 8.1 60 164-225 8-70 (254)
346 PRK06949 short chain dehydroge 78.3 14 0.0003 31.6 8.3 60 163-225 7-70 (258)
347 PLN02668 indole-3-acetate carb 78.0 4.5 9.7E-05 38.2 5.3 21 165-185 64-84 (386)
348 PRK09186 flagellin modificatio 77.8 13 0.00029 31.6 8.1 61 164-225 3-67 (256)
349 PRK09291 short chain dehydroge 77.8 13 0.00028 31.8 7.9 58 166-225 3-63 (257)
350 PRK06914 short chain dehydroge 77.8 14 0.00029 32.2 8.2 60 165-225 3-66 (280)
351 PRK09424 pntA NAD(P) transhydr 77.6 4.2 9E-05 39.8 5.2 42 163-205 163-206 (509)
352 KOG2013 SMT3/SUMO-activating c 77.0 3.4 7.4E-05 39.9 4.3 64 164-227 11-96 (603)
353 PF05050 Methyltransf_21: Meth 76.7 7.5 0.00016 30.7 5.8 53 170-222 1-61 (167)
354 PRK07576 short chain dehydroge 76.6 15 0.00033 31.8 8.2 58 164-224 8-69 (264)
355 PRK08303 short chain dehydroge 76.5 12 0.00025 33.8 7.5 60 164-225 7-79 (305)
356 PTZ00357 methyltransferase; Pr 76.4 8.3 0.00018 39.2 6.8 60 166-225 702-775 (1072)
357 PRK06181 short chain dehydroge 76.2 15 0.00033 31.6 8.0 57 166-225 2-62 (263)
358 PRK07666 fabG 3-ketoacyl-(acyl 76.0 17 0.00038 30.7 8.2 59 164-225 6-68 (239)
359 PRK07791 short chain dehydroge 76.0 14 0.0003 32.7 7.8 59 164-224 5-75 (286)
360 PRK05854 short chain dehydroge 75.9 17 0.00036 32.7 8.4 62 163-225 12-77 (313)
361 PRK12481 2-deoxy-D-gluconate 3 75.7 15 0.00032 31.7 7.8 58 164-225 7-67 (251)
362 PRK05650 short chain dehydroge 75.7 16 0.00034 31.8 8.0 57 167-225 2-61 (270)
363 PRK12429 3-hydroxybutyrate deh 75.7 18 0.00039 30.7 8.3 59 164-225 3-65 (258)
364 PRK08226 short chain dehydroge 75.6 15 0.00033 31.5 7.9 59 164-225 5-66 (263)
365 PRK07792 fabG 3-ketoacyl-(acyl 75.5 15 0.00033 32.9 8.0 60 163-224 10-73 (306)
366 KOG1253 tRNA methyltransferase 75.5 0.94 2E-05 43.7 0.1 68 157-224 102-172 (525)
367 PRK08267 short chain dehydroge 75.4 14 0.00029 31.8 7.5 56 166-225 2-60 (260)
368 PRK06138 short chain dehydroge 75.3 17 0.00036 30.9 8.0 58 164-225 4-65 (252)
369 PRK06720 hypothetical protein; 74.6 23 0.0005 29.1 8.3 59 164-224 15-76 (169)
370 PF06962 rRNA_methylase: Putat 74.5 6.4 0.00014 31.8 4.7 37 189-225 1-38 (140)
371 PRK12823 benD 1,6-dihydroxycyc 74.2 20 0.00043 30.7 8.2 59 164-225 7-68 (260)
372 KOG0821 Predicted ribosomal RN 74.1 5.7 0.00012 34.9 4.5 60 164-224 50-109 (326)
373 PRK12829 short chain dehydroge 74.1 17 0.00037 31.0 7.8 58 163-225 9-70 (264)
374 PRK12384 sorbitol-6-phosphate 73.9 19 0.0004 30.9 7.9 58 165-224 2-64 (259)
375 PF02737 3HCDH_N: 3-hydroxyacy 73.8 7.9 0.00017 32.2 5.3 42 167-209 1-44 (180)
376 COG1748 LYS9 Saccharopine dehy 73.7 10 0.00023 35.8 6.6 69 166-238 2-78 (389)
377 PRK09880 L-idonate 5-dehydroge 73.6 6.7 0.00015 35.6 5.3 42 164-205 169-212 (343)
378 PRK06200 2,3-dihydroxy-2,3-dih 73.4 16 0.00035 31.5 7.4 57 164-225 5-64 (263)
379 COG1062 AdhC Zn-dependent alco 73.0 8.6 0.00019 35.7 5.7 44 163-206 184-229 (366)
380 PF05206 TRM13: Methyltransfer 73.0 9.7 0.00021 33.9 5.9 63 164-227 18-87 (259)
381 cd01065 NAD_bind_Shikimate_DH 72.9 18 0.0004 28.5 7.1 42 164-205 18-61 (155)
382 PRK05653 fabG 3-ketoacyl-(acyl 72.9 21 0.00046 29.9 7.9 58 165-225 5-66 (246)
383 PRK06701 short chain dehydroge 72.8 19 0.00041 31.9 7.9 61 163-225 44-108 (290)
384 TIGR02415 23BDH acetoin reduct 72.6 21 0.00045 30.4 7.9 56 167-225 2-61 (254)
385 PLN02780 ketoreductase/ oxidor 72.2 20 0.00044 32.4 8.1 59 165-224 53-115 (320)
386 PRK05875 short chain dehydroge 72.2 23 0.0005 30.7 8.2 60 164-225 6-70 (276)
387 PLN02253 xanthoxin dehydrogena 72.1 20 0.00043 31.2 7.7 58 164-225 17-78 (280)
388 KOG2018 Predicted dinucleotide 71.8 8.8 0.00019 35.3 5.4 42 164-205 73-116 (430)
389 PRK09135 pteridine reductase; 71.7 24 0.00052 29.7 8.0 60 164-225 5-69 (249)
390 TIGR01832 kduD 2-deoxy-D-gluco 71.5 21 0.00046 30.3 7.7 58 164-225 4-64 (248)
391 PRK08265 short chain dehydroge 71.4 19 0.00042 31.1 7.5 57 164-225 5-64 (261)
392 PF02086 MethyltransfD12: D12 71.0 5.7 0.00012 34.4 4.0 44 164-208 20-63 (260)
393 PRK06198 short chain dehydroge 70.9 26 0.00056 29.9 8.1 60 164-225 5-68 (260)
394 PRK07774 short chain dehydroge 70.7 28 0.00061 29.5 8.2 59 164-225 5-67 (250)
395 PRK07453 protochlorophyllide o 70.6 23 0.00049 31.8 8.0 60 164-225 5-67 (322)
396 PRK08278 short chain dehydroge 70.5 20 0.00044 31.2 7.5 60 164-225 5-74 (273)
397 COG5379 BtaA S-adenosylmethion 70.4 13 0.00028 34.0 6.1 45 163-208 62-106 (414)
398 PRK05599 hypothetical protein; 70.4 22 0.00048 30.5 7.5 57 167-225 2-61 (246)
399 TIGR02356 adenyl_thiF thiazole 70.3 16 0.00035 30.9 6.5 33 164-196 20-54 (202)
400 PRK07533 enoyl-(acyl carrier p 70.2 23 0.0005 30.6 7.7 59 164-225 9-72 (258)
401 PRK05855 short chain dehydroge 70.1 21 0.00046 34.3 8.1 60 164-225 314-376 (582)
402 TIGR01963 PHB_DH 3-hydroxybuty 70.0 25 0.00055 29.8 7.8 57 166-225 2-62 (255)
403 PRK07067 sorbitol dehydrogenas 69.7 23 0.0005 30.3 7.5 57 164-225 5-64 (257)
404 PRK08628 short chain dehydroge 69.4 25 0.00055 30.0 7.8 59 163-224 5-66 (258)
405 cd08237 ribitol-5-phosphate_DH 69.4 9.5 0.0002 34.7 5.2 43 163-205 162-207 (341)
406 PRK08251 short chain dehydroge 69.2 28 0.0006 29.5 7.9 59 165-225 2-65 (248)
407 COG3510 CmcI Cephalosporin hyd 69.0 6.1 0.00013 33.9 3.5 57 163-224 68-129 (237)
408 PRK07819 3-hydroxybutyryl-CoA 68.9 12 0.00025 33.6 5.6 41 166-207 6-48 (286)
409 PRK08416 7-alpha-hydroxysteroi 68.5 29 0.00063 29.9 8.0 61 163-225 6-71 (260)
410 PRK06035 3-hydroxyacyl-CoA deh 68.0 12 0.00027 33.3 5.6 41 166-207 4-46 (291)
411 PRK07825 short chain dehydroge 67.8 24 0.00052 30.6 7.3 56 164-225 4-62 (273)
412 PRK06196 oxidoreductase; Provi 67.7 25 0.00054 31.5 7.6 56 164-225 25-83 (315)
413 PRK08993 2-deoxy-D-gluconate 3 67.5 26 0.00056 30.1 7.4 58 163-224 8-68 (253)
414 PRK06114 short chain dehydroge 67.2 32 0.00069 29.5 7.9 59 164-225 7-70 (254)
415 TIGR03325 BphB_TodD cis-2,3-di 67.2 26 0.00055 30.2 7.3 56 164-224 4-62 (262)
416 KOG0022 Alcohol dehydrogenase, 66.7 14 0.00031 34.1 5.6 43 163-205 191-235 (375)
417 PRK06197 short chain dehydroge 66.5 33 0.00073 30.4 8.1 61 164-225 15-79 (306)
418 PLN02740 Alcohol dehydrogenase 66.3 13 0.00027 34.5 5.5 44 162-205 196-241 (381)
419 PRK07832 short chain dehydroge 66.2 31 0.00067 29.9 7.7 57 167-224 2-61 (272)
420 PRK12475 thiamine/molybdopteri 66.0 23 0.00051 32.7 7.1 34 164-197 23-58 (338)
421 PRK07775 short chain dehydroge 65.7 39 0.00084 29.4 8.2 58 165-225 10-71 (274)
422 PRK07806 short chain dehydroge 65.4 39 0.00085 28.6 8.1 59 164-225 5-68 (248)
423 PRK05872 short chain dehydroge 65.1 33 0.00072 30.4 7.8 59 163-224 7-68 (296)
424 PF01488 Shikimate_DH: Shikima 65.1 30 0.00064 27.2 6.7 70 163-235 10-82 (135)
425 PF03721 UDPG_MGDP_dh_N: UDP-g 64.9 10 0.00022 31.9 4.1 38 167-205 2-41 (185)
426 PRK07201 short chain dehydroge 64.8 31 0.00068 34.1 8.3 60 164-225 370-432 (657)
427 TIGR03201 dearomat_had 6-hydro 64.7 15 0.00032 33.5 5.5 42 163-205 165-208 (349)
428 PRK05717 oxidoreductase; Valid 64.5 31 0.00067 29.5 7.3 57 163-225 8-68 (255)
429 KOG1596 Fibrillarin and relate 64.2 18 0.00039 32.3 5.5 73 163-237 155-235 (317)
430 cd08254 hydroxyacyl_CoA_DH 6-h 64.1 15 0.00033 32.5 5.5 42 163-205 164-207 (338)
431 KOG2872 Uroporphyrinogen decar 64.0 12 0.00026 34.0 4.6 75 127-202 212-287 (359)
432 PRK08644 thiamine biosynthesis 63.4 37 0.00081 29.0 7.5 33 164-196 27-61 (212)
433 PF03492 Methyltransf_7: SAM d 63.3 16 0.00035 33.7 5.5 22 164-185 16-37 (334)
434 COG0569 TrkA K+ transport syst 63.0 26 0.00056 30.3 6.5 53 167-225 2-56 (225)
435 PRK10669 putative cation:proto 62.7 16 0.00034 36.0 5.7 50 166-225 418-471 (558)
436 PRK12743 oxidoreductase; Provi 62.7 44 0.00094 28.6 7.9 58 165-225 2-64 (256)
437 TIGR03451 mycoS_dep_FDH mycoth 62.6 17 0.00036 33.2 5.5 43 163-205 175-219 (358)
438 PRK07066 3-hydroxybutyryl-CoA 62.4 19 0.0004 33.1 5.7 40 166-206 8-49 (321)
439 PRK05565 fabG 3-ketoacyl-(acyl 62.3 46 0.00099 27.9 7.9 58 165-225 5-67 (247)
440 TIGR02818 adh_III_F_hyde S-(hy 62.2 17 0.00037 33.4 5.5 43 163-205 184-228 (368)
441 PRK12744 short chain dehydroge 62.2 47 0.001 28.4 8.1 59 164-225 7-73 (257)
442 PRK07688 thiamine/molybdopteri 62.2 30 0.00065 32.0 7.0 33 164-196 23-57 (339)
443 cd00401 AdoHcyase S-adenosyl-L 62.1 18 0.00038 34.6 5.6 43 162-205 199-243 (413)
444 PRK06182 short chain dehydroge 62.1 37 0.00081 29.4 7.5 52 165-225 3-58 (273)
445 PRK06180 short chain dehydroge 62.0 33 0.0007 29.9 7.1 56 165-225 4-62 (277)
446 PLN02989 cinnamyl-alcohol dehy 62.0 24 0.00053 31.5 6.4 60 165-226 5-69 (325)
447 PRK08293 3-hydroxybutyryl-CoA 62.0 19 0.00041 32.0 5.6 41 166-207 4-46 (287)
448 PRK08324 short chain dehydroge 61.8 34 0.00073 34.6 7.9 59 164-225 421-482 (681)
449 PRK06057 short chain dehydroge 61.7 31 0.00068 29.5 6.8 54 164-224 6-62 (255)
450 COG2933 Predicted SAM-dependen 61.5 20 0.00044 32.3 5.5 35 162-197 209-243 (358)
451 KOG1098 Putative SAM-dependent 61.4 8 0.00017 38.6 3.2 35 163-197 43-79 (780)
452 PRK05808 3-hydroxybutyryl-CoA 61.3 20 0.00044 31.7 5.7 38 167-205 5-44 (282)
453 cd01487 E1_ThiF_like E1_ThiF_l 61.3 35 0.00076 28.2 6.7 31 167-197 1-33 (174)
454 KOG4169 15-hydroxyprostaglandi 61.3 23 0.00051 31.2 5.7 60 164-224 4-66 (261)
455 PRK12827 short chain dehydroge 61.2 55 0.0012 27.5 8.2 59 164-225 5-71 (249)
456 PRK05993 short chain dehydroge 61.0 33 0.00072 29.9 6.9 52 165-224 4-58 (277)
457 PRK03659 glutathione-regulated 60.9 18 0.00039 36.1 5.7 50 166-225 401-454 (601)
458 cd08281 liver_ADH_like1 Zinc-d 60.8 19 0.00041 33.1 5.5 43 163-205 190-234 (371)
459 KOG0725 Reductases with broad 60.6 16 0.00035 32.5 4.9 62 163-225 6-72 (270)
460 PRK06505 enoyl-(acyl carrier p 60.6 44 0.00096 29.2 7.7 59 164-225 6-69 (271)
461 PRK09260 3-hydroxybutyryl-CoA 60.1 22 0.00048 31.6 5.7 39 167-206 3-43 (288)
462 TIGR03366 HpnZ_proposed putati 60.1 18 0.0004 31.7 5.2 42 164-205 120-163 (280)
463 COG1086 Predicted nucleoside-d 60.0 43 0.00093 33.3 7.9 64 161-225 246-314 (588)
464 PRK07985 oxidoreductase; Provi 59.8 50 0.0011 29.3 8.0 61 163-225 47-112 (294)
465 PRK08415 enoyl-(acyl carrier p 59.8 56 0.0012 28.7 8.2 59 164-225 4-67 (274)
466 cd05188 MDR Medium chain reduc 59.4 27 0.00059 29.5 6.0 42 163-205 133-176 (271)
467 PRK05597 molybdopterin biosynt 59.4 31 0.00068 32.0 6.7 33 164-196 27-61 (355)
468 COG0300 DltE Short-chain dehyd 59.4 56 0.0012 29.2 8.0 61 164-226 5-69 (265)
469 TIGR01289 LPOR light-dependent 59.3 49 0.0011 29.7 7.9 60 165-225 3-65 (314)
470 PRK07074 short chain dehydroge 59.3 54 0.0012 27.9 7.9 57 165-225 2-61 (257)
471 PRK08594 enoyl-(acyl carrier p 59.3 36 0.00077 29.5 6.8 58 164-225 6-71 (257)
472 PRK06841 short chain dehydroge 59.1 51 0.0011 28.0 7.7 57 164-225 14-73 (255)
473 PRK06500 short chain dehydroge 58.9 49 0.0011 27.9 7.5 57 164-225 5-64 (249)
474 TIGR01500 sepiapter_red sepiap 58.8 59 0.0013 27.9 8.1 58 167-225 2-67 (256)
475 PRK06101 short chain dehydroge 58.8 36 0.00078 28.9 6.6 53 166-225 2-58 (240)
476 PRK15181 Vi polysaccharide bio 58.6 31 0.00066 31.4 6.5 61 163-225 13-81 (348)
477 PRK08690 enoyl-(acyl carrier p 58.4 45 0.00097 28.9 7.3 59 164-225 5-68 (261)
478 KOG2360 Proliferation-associat 58.4 20 0.00043 33.9 5.1 63 163-225 212-276 (413)
479 TIGR01202 bchC 2-desacetyl-2-h 58.3 16 0.00034 32.7 4.5 42 164-205 144-187 (308)
480 PRK07877 hypothetical protein; 58.2 35 0.00076 35.0 7.3 32 164-195 106-139 (722)
481 PRK08936 glucose-1-dehydrogena 58.2 66 0.0014 27.5 8.3 61 163-225 5-69 (261)
482 TIGR02622 CDP_4_6_dhtase CDP-g 58.1 29 0.00063 31.5 6.2 58 164-225 3-64 (349)
483 PRK06940 short chain dehydroge 57.9 51 0.0011 28.8 7.6 56 166-225 3-61 (275)
484 PLN02662 cinnamyl-alcohol dehy 57.8 28 0.00061 30.9 6.0 59 165-225 4-67 (322)
485 PRK10538 malonic semialdehyde 57.1 53 0.0011 27.9 7.5 54 167-225 2-58 (248)
486 PRK06482 short chain dehydroge 57.1 47 0.001 28.8 7.2 54 166-225 3-60 (276)
487 COG5459 Predicted rRNA methyla 57.0 10 0.00023 35.5 3.0 46 163-208 112-159 (484)
488 PRK14851 hypothetical protein; 57.0 53 0.0012 33.4 8.3 31 164-194 42-74 (679)
489 cd08301 alcohol_DH_plants Plan 56.7 25 0.00054 32.2 5.6 44 162-205 185-230 (369)
490 KOG1371 UDP-glucose 4-epimeras 56.4 19 0.0004 33.3 4.5 58 165-226 2-67 (343)
491 cd08255 2-desacetyl-2-hydroxye 56.3 27 0.00058 30.2 5.5 44 163-206 96-141 (277)
492 PRK11730 fadB multifunctional 56.1 24 0.00052 36.0 5.7 41 166-207 314-356 (715)
493 TIGR02632 RhaD_aldol-ADH rhamn 56.0 53 0.0011 33.3 8.2 61 164-225 413-477 (676)
494 PRK09496 trkA potassium transp 56.0 23 0.0005 33.4 5.3 53 164-224 230-286 (453)
495 PRK07417 arogenate dehydrogena 55.6 23 0.00051 31.4 5.1 38 167-205 2-41 (279)
496 cd08232 idonate-5-DH L-idonate 55.6 23 0.0005 31.7 5.1 42 164-205 165-208 (339)
497 PLN02827 Alcohol dehydrogenase 55.5 26 0.00055 32.5 5.5 44 162-205 191-236 (378)
498 PRK12548 shikimate 5-dehydroge 55.2 53 0.0011 29.4 7.3 33 164-197 125-160 (289)
499 KOG0822 Protein kinase inhibit 55.2 17 0.00036 35.8 4.2 72 165-237 368-448 (649)
500 KOG1562 Spermidine synthase [A 55.2 15 0.00032 33.6 3.6 62 163-224 120-186 (337)
No 1
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=184.79 Aligned_cols=142 Identities=48% Similarity=0.806 Sum_probs=121.8
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhc
Q 025035 81 EEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEEND 160 (259)
Q Consensus 81 ~~~~~~~~~s~l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 160 (259)
+++ .++..|+||.++|||+.|+.++.||.++++.|++||+++.+.++..|+..++. +.+
T Consensus 5 ~~~-adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~-~~r------------------- 63 (227)
T KOG1271|consen 5 SEP-ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIV-ISR------------------- 63 (227)
T ss_pred ccc-ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhh-hhh-------------------
Confidence 344 56899999999999999999999999999999999999999999999998764 111
Q ss_pred cCCCC-CEEEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ceeEEEe
Q 025035 161 KYLSS-WSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TYFICKS 234 (259)
Q Consensus 161 ~~~~~-~~VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv~~ 234 (259)
+.+. .+|||+|||+|.+++.|++.|+. .++|+|+|+.++++|+..+++.++++ |+|.+.|+.+..+ .||+|
T Consensus 64 -v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv-- 140 (227)
T KOG1271|consen 64 -VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV-- 140 (227)
T ss_pred -hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE--
Confidence 1122 39999999999999999999887 49999999999999999999999987 9999999999644 88886
Q ss_pred cccCccccceeeee
Q 025035 235 ERNEHYTFDLYQIG 248 (259)
Q Consensus 235 ~v~~h~~~D~i~~~ 248 (259)
+...++|.|.+.
T Consensus 141 --lDKGT~DAisLs 152 (227)
T KOG1271|consen 141 --LDKGTLDAISLS 152 (227)
T ss_pred --eecCceeeeecC
Confidence 456777776553
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=2.4e-15 Score=131.35 Aligned_cols=127 Identities=19% Similarity=0.319 Sum_probs=102.6
Q ss_pred cchhhhhhhHHHHHhhcCccccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHH
Q 025035 51 LDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVAS 130 (259)
Q Consensus 51 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~ 130 (259)
++.++...+++.+|.+ ++..|+.|++- ..+|.+..|.+.....+..
T Consensus 4 ~~~~~k~~~v~~vF~~-----ia~~YD~~n~~-------~S~g~~~~Wr~~~i~~~~~---------------------- 49 (238)
T COG2226 4 VAKDEKQEKVQKVFDK-----VAKKYDLMNDL-------MSFGLHRLWRRALISLLGI---------------------- 49 (238)
T ss_pred ccccccHHHHHHHHHh-----hHHHHHhhccc-------ccCcchHHHHHHHHHhhCC----------------------
Confidence 4556667788889988 99999999877 7899999998864321100
Q ss_pred HHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh
Q 025035 131 WTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR 209 (259)
Q Consensus 131 w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~ 209 (259)
.++.+|||+|||||.+++.+++. |..+|+|+|+|+.||+.|++++..
T Consensus 50 --------------------------------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 50 --------------------------------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred --------------------------------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence 14789999999999999999998 556999999999999999999998
Q ss_pred cCCcceEEEEecccCCCc---ceeEEEecccCccccc
Q 025035 210 DGFSCIKFLVMNISVQIL---TYFICKSERNEHYTFD 243 (259)
Q Consensus 210 ~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~~D 243 (259)
.+..+++|+++|++++|+ +||++......|...|
T Consensus 98 ~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d 134 (238)
T COG2226 98 KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD 134 (238)
T ss_pred cCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC
Confidence 877679999999999988 7886655555444433
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.46 E-value=2.4e-13 Score=118.93 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=58.4
Q ss_pred CCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNE 238 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~ 238 (259)
++.+|||+|||+|.++..++++ + ..+|+|+|+|+.|++.|+++.+..+..+|+|+++|++++++ +||++.+....
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4779999999999999999987 3 34999999999999999999998887789999999999877 78977766666
Q ss_pred ccccc
Q 025035 239 HYTFD 243 (259)
Q Consensus 239 h~~~D 243 (259)
|...|
T Consensus 127 rn~~d 131 (233)
T PF01209_consen 127 RNFPD 131 (233)
T ss_dssp GG-SS
T ss_pred HhhCC
Confidence 55444
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.45 E-value=2.8e-13 Score=117.84 Aligned_cols=123 Identities=15% Similarity=0.288 Sum_probs=103.8
Q ss_pred ccCCCCCC-CcchhhhhhhHHHHHhhcCccccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHhhhhccCCCcceec
Q 025035 42 SIKSEYGS-TLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120 (259)
Q Consensus 42 ~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF 120 (259)
++.+++|. |+.+.++-..+..+|++ ++..|+.|+|. +.+|.+..|++.+-..+..
T Consensus 43 ~~~Thfgf~tV~e~eke~~V~~vF~~-----vA~~YD~mND~-------mSlGiHRlWKd~~v~~L~p------------ 98 (296)
T KOG1540|consen 43 SKCTHFGFKTVRESEKERLVHHVFES-----VAKKYDIMNDA-------MSLGIHRLWKDMFVSKLGP------------ 98 (296)
T ss_pred cccccccccccchhhhhhHHHHHHHH-----HHHHHHHHHHH-------hhcchhHHHHHHhhhccCC------------
Confidence 55688884 67899999999999999 88889999999 8999999998876433322
Q ss_pred CcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEccCcChhHHHHHhc-CC------CcEEEE
Q 025035 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGV 193 (259)
Q Consensus 121 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~------~~V~gi 193 (259)
.++.++||++||+|.+++.+.+. +. ++|+++
T Consensus 99 ------------------------------------------~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~ 136 (296)
T KOG1540|consen 99 ------------------------------------------GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL 136 (296)
T ss_pred ------------------------------------------CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence 23689999999999999999987 32 589999
Q ss_pred eCCHHHHHHHHHHhHhcCCc---ceEEEEecccCCCc---cee
Q 025035 194 DYSEDAINLAQSLANRDGFS---CIKFLVMNISVQIL---TYF 230 (259)
Q Consensus 194 D~S~~~i~~a~~~~~~~~l~---~i~~i~~D~~~~~~---~fd 230 (259)
|+|++|++.+++++.+.++. .+.|+++|++++|+ .||
T Consensus 137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 99999999999999776663 38999999999987 455
No 5
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=2.5e-12 Score=104.70 Aligned_cols=80 Identities=33% Similarity=0.361 Sum_probs=67.0
Q ss_pred CCCEEEEEccCcChhHHHHHh-c-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEeccc
Q 025035 164 SSWSVLDIGTGNGLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERN 237 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~-~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~ 237 (259)
++.+|||+|||+|.++..+++ . +..+++|+|+|+.||+.|+++++..++.+++|+++|+.+++ ..||++++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 478999999999999999994 3 23489999999999999999999999888999999999976 37998877766
Q ss_pred Cccccc
Q 025035 238 EHYTFD 243 (259)
Q Consensus 238 ~h~~~D 243 (259)
.|...|
T Consensus 83 l~~~~~ 88 (152)
T PF13847_consen 83 LHHFPD 88 (152)
T ss_dssp GGGTSH
T ss_pred hhhccC
Confidence 554443
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.39 E-value=4.7e-13 Score=115.91 Aligned_cols=80 Identities=29% Similarity=0.378 Sum_probs=69.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---cee-EEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYF-ICKSERNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fd-vv~~~v~~ 238 (259)
.++.+|||+|||.|.++..+|+.|+ +|+|+|+|+.+|+.|+.++...++ ++.+.+..++++.. +|| |++.+|++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4689999999999999999999996 999999999999999999998887 57788877777533 888 57788889
Q ss_pred ccccce
Q 025035 239 HYTFDL 244 (259)
Q Consensus 239 h~~~D~ 244 (259)
|++..-
T Consensus 136 Hv~dp~ 141 (243)
T COG2227 136 HVPDPE 141 (243)
T ss_pred ccCCHH
Confidence 887643
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=4.9e-12 Score=96.99 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=60.0
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecc-cC--CCcceeEEEecc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNI-SV--QILTYFICKSER 236 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~-~~--~~~~fdvv~~~v 236 (259)
++.+|||||||+|.++..++++ +..+|+|+|+|+.+++.|++++...+. .+++++++|+ .. ....||+++...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 4689999999999999999993 445999999999999999999955554 4799999999 33 333788776655
No 8
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.35 E-value=1.9e-12 Score=110.32 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=66.1
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~ 240 (259)
++.+|||+|||+|..+..|+++|. +|+|+|+|+.|++.+++++...++.++++++.|+.+.++ .||+|++....|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 568999999999999999999976 999999999999999999988888779999999987543 7888777766654
No 9
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=8.2e-12 Score=105.92 Aligned_cols=75 Identities=32% Similarity=0.347 Sum_probs=60.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h 239 (259)
.+++++||+|||.|+.+++|+++|+ .|+++|+|+.+++.+++.++..++ +|+..+.|+.+... .||+|++.++.+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEEEEEEEec
Confidence 4578999999999999999999999 899999999999999999988888 59999999987544 789887755443
No 10
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=4.4e-12 Score=109.52 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=57.3
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh------------cCCcceEEEEecccCCCc----
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVMNISVQIL---- 227 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~------------~~l~~i~~i~~D~~~~~~---- 227 (259)
++.+|||+|||.|..++.|+++|+ +|+|+|+|+.+|+.+.+.... ..-.+|+++++|+.++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 467999999999999999999998 899999999999986443211 011269999999988653
Q ss_pred ceeEEEeccc
Q 025035 228 TYFICKSERN 237 (259)
Q Consensus 228 ~fdvv~~~v~ 237 (259)
.||.++....
T Consensus 113 ~fD~i~D~~~ 122 (213)
T TIGR03840 113 PVDAVYDRAA 122 (213)
T ss_pred CcCEEEechh
Confidence 5787766554
No 11
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.26 E-value=3.6e-12 Score=111.47 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=65.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC--c----ceEEEEecccCCCccee-EEEecc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--S----CIKFLVMNISVQILTYF-ICKSER 236 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l--~----~i~~i~~D~~~~~~~fd-vv~~~v 236 (259)
-+++|||+|||+|.++..|++.|+ .|+|||.++.||+.|+++.+.... . ++++.+.+++.....|| |+++++
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 367899999999999999999986 999999999999999999554432 1 37788899988877899 788899
Q ss_pred cCccc
Q 025035 237 NEHYT 241 (259)
Q Consensus 237 ~~h~~ 241 (259)
++|+.
T Consensus 168 leHV~ 172 (282)
T KOG1270|consen 168 LEHVK 172 (282)
T ss_pred HHHHh
Confidence 99984
No 12
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.25 E-value=4.3e-11 Score=109.11 Aligned_cols=79 Identities=23% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-----CcceEEEEecccCCCcceeEEE-eccc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVMNISVQILTYFICK-SERN 237 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-----l~~i~~i~~D~~~~~~~fdvv~-~~v~ 237 (259)
++.+|||||||+|.+++.++++|. +|+|+|+|+.|++.++++++..+ ..++.|.+.|+.+....||+|+ ..++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 467999999999999999999876 89999999999999999987642 2358999999987767889654 4455
Q ss_pred Cccccc
Q 025035 238 EHYTFD 243 (259)
Q Consensus 238 ~h~~~D 243 (259)
.|++.+
T Consensus 223 ~H~p~~ 228 (315)
T PLN02585 223 IHYPQD 228 (315)
T ss_pred EecCHH
Confidence 666543
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.23 E-value=2.4e-11 Score=103.41 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=62.8
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~ 240 (259)
++.+|||+|||+|.++..++++|. +|+|+|+|+.|++.+++++...++ ++++.+.|+...+ ..||+|++..+.|.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence 467999999999999999999986 999999999999999999888777 4888888876533 36887777666554
No 14
>PRK05785 hypothetical protein; Provisional
Probab=99.22 E-value=5.5e-11 Score=103.55 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=56.8
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~ 240 (259)
++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++ ..++++|+.++++ +||+|.+....|.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence 3679999999999999999988323899999999999999863 2357888888765 7897776665554
Q ss_pred ccc
Q 025035 241 TFD 243 (259)
Q Consensus 241 ~~D 243 (259)
..|
T Consensus 123 ~~d 125 (226)
T PRK05785 123 SDN 125 (226)
T ss_pred cCC
Confidence 333
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=1.3e-10 Score=103.27 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=62.9
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHh---cCCcceEEEEecccCCCc---ceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVMNISVQIL---TYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~---~~l~~i~~i~~D~~~~~~---~fdvv~~~ 235 (259)
++.+|||+|||+|.++..++++ +. .+|+|+|+|+.|++.|+++... ....+++++++|+.++++ +||+|++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4679999999999999999886 32 4899999999999999887542 223479999999998765 69987766
Q ss_pred ccCcccc
Q 025035 236 RNEHYTF 242 (259)
Q Consensus 236 v~~h~~~ 242 (259)
...|...
T Consensus 153 ~~l~~~~ 159 (261)
T PLN02233 153 YGLRNVV 159 (261)
T ss_pred cccccCC
Confidence 6555443
No 16
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.18 E-value=8.9e-11 Score=105.61 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=64.9
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC--CcceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ--ILTYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~--~~~fdvv~~~v~~h~ 240 (259)
++.+|||+|||+|..++.+++.|. +|+|+|+|+.|++.+++++...++ ++++.+.|+... +..||+|++..+.|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhh
Confidence 456999999999999999999986 999999999999999999988887 899999998764 337898877766554
No 17
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.18 E-value=9.2e-11 Score=100.66 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=58.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEeccc-C
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERN-E 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~-~ 238 (259)
.++.+|||||||+|..+..+++. +..+++|+|+|+.|++.|+++. .++.++++|+.+.. ..||+|++..+ .
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDPFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCCCCCCCEEEEEECChhh
Confidence 45779999999999999999887 4459999999999999998864 25778889988721 27997666554 4
Q ss_pred ccc
Q 025035 239 HYT 241 (259)
Q Consensus 239 h~~ 241 (259)
|..
T Consensus 117 hl~ 119 (204)
T TIGR03587 117 HIN 119 (204)
T ss_pred hCC
Confidence 554
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.18 E-value=8.5e-11 Score=103.50 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=63.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~ 237 (259)
.++.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|++++...+.. +++++++|+.+.+. .+|++.+...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 35789999999999999988873 3349999999999999999999877664 69999999988654 5776665554
Q ss_pred Ccc
Q 025035 238 EHY 240 (259)
Q Consensus 238 ~h~ 240 (259)
.|+
T Consensus 135 l~~ 137 (247)
T PRK15451 135 LQF 137 (247)
T ss_pred HHh
Confidence 443
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.17 E-value=1.2e-10 Score=98.57 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=62.5
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~ 235 (259)
++.+|||+|||+|..++.+++. +..+|+|+|+|+.|++.|+++++..++.+++++++|+.+... +||+|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEc
Confidence 4789999999999999999875 445999999999999999999999998779999999988654 68877664
No 20
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=8.8e-11 Score=101.80 Aligned_cols=73 Identities=18% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh------------cCCcceEEEEecccCCC----c
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVMNISVQI----L 227 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~------------~~l~~i~~i~~D~~~~~----~ 227 (259)
++.+|||+|||.|..+..|+++|+ +|+|||+|+.+|+.+.+.... ....+|++.++|+.++. .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 467999999999999999999998 899999999999987532111 01136899999999863 2
Q ss_pred ceeEEEeccc
Q 025035 228 TYFICKSERN 237 (259)
Q Consensus 228 ~fdvv~~~v~ 237 (259)
.||.++....
T Consensus 116 ~fd~v~D~~~ 125 (218)
T PRK13255 116 DVDAVYDRAA 125 (218)
T ss_pred CeeEEEehHh
Confidence 6777765554
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=1.1e-10 Score=98.27 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSER 236 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v 236 (259)
++.+|||+|||+|.++..++..+ ..+|+|+|+|+.|++.+++++++.++.+++++++|+.+.. ..||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh
Confidence 47899999999999999988763 3489999999999999999998888878999999998853 3788777665
No 22
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.14 E-value=1.4e-10 Score=103.88 Aligned_cols=78 Identities=24% Similarity=0.255 Sum_probs=61.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCccee-EEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQILTYF-ICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~~fd-vv~~~v~~h 239 (259)
.++.+|||||||.|.+++.++++ |+ +|+||.+|+...+.+++++...|+.+ +++.++|..+.+..|| |++..+++|
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Eh 139 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEH 139 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGG
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhh
Confidence 57899999999999999999999 76 99999999999999999999999864 9999999999888999 677788888
Q ss_pred cc
Q 025035 240 YT 241 (259)
Q Consensus 240 ~~ 241 (259)
..
T Consensus 140 vg 141 (273)
T PF02353_consen 140 VG 141 (273)
T ss_dssp TC
T ss_pred cC
Confidence 74
No 23
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.14 E-value=1.7e-10 Score=99.45 Aligned_cols=78 Identities=31% Similarity=0.393 Sum_probs=65.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCcceeEEEe-cccCcc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQILTYFICKS-ERNEHY 240 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~~fdvv~~-~v~~h~ 240 (259)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. .++.|.++|+.+.+..||++.+ .++.|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 4578999999999999999998865 999999999999999999877665 3699999999987778886554 445555
Q ss_pred c
Q 025035 241 T 241 (259)
Q Consensus 241 ~ 241 (259)
+
T Consensus 133 ~ 133 (219)
T TIGR02021 133 P 133 (219)
T ss_pred C
Confidence 4
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.14 E-value=1.3e-10 Score=88.12 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=54.8
Q ss_pred EEEEccCcChhHHHHHhcC---C-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035 168 VLDIGTGNGLLLQELSKQG---F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS 234 (259)
Q Consensus 168 VLDiGcG~G~~~~~la~~g---~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~ 234 (259)
|||+|||+|..+..+++.. . .+++|+|+|+.|++.++++....+. +++|+++|+.+++. .||++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999873 2 5999999999999999999988776 89999999998654 7887666
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=1.4e-10 Score=103.41 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=71.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCccee-EEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYF-ICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fd-vv~~~v~~h 239 (259)
.+|.+|||||||.|.++++++++ |. +|+|+++|+++.+.+++++...|+. +++++..|..+....|| ||+..+.+|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEh 149 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEH 149 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHH
Confidence 57899999999999999999998 45 9999999999999999999999987 69999999999888899 677777787
Q ss_pred ccc
Q 025035 240 YTF 242 (259)
Q Consensus 240 ~~~ 242 (259)
+..
T Consensus 150 vg~ 152 (283)
T COG2230 150 VGK 152 (283)
T ss_pred hCc
Confidence 665
No 26
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.11 E-value=2.4e-10 Score=98.62 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=64.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCcceeEEEecc-cCcc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQILTYFICKSER-NEHY 240 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~~fdvv~~~v-~~h~ 240 (259)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. .+++|.++|+......||+++... +.|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 3567999999999999999999876 799999999999999999887766 469999999766656889765544 4454
Q ss_pred c
Q 025035 241 T 241 (259)
Q Consensus 241 ~ 241 (259)
+
T Consensus 141 ~ 141 (230)
T PRK07580 141 P 141 (230)
T ss_pred C
Confidence 4
No 27
>PLN02244 tocopherol O-methyltransferase
Probab=99.11 E-value=3.6e-10 Score=104.15 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=64.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEeccc-
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERN- 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~- 237 (259)
.++.+|||||||+|.++..++++...+|+|+|+|+.|++.++++++..++. +++|+++|+.+.++ .||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 356899999999999999999873339999999999999999998888774 59999999988654 7897776444
Q ss_pred Ccc
Q 025035 238 EHY 240 (259)
Q Consensus 238 ~h~ 240 (259)
.|.
T Consensus 197 ~h~ 199 (340)
T PLN02244 197 EHM 199 (340)
T ss_pred hcc
Confidence 444
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.11 E-value=4.8e-10 Score=97.14 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~ 237 (259)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++....++.+++++++|+.+.++ .||+|.+...
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 35789999999999999999986 3 24899999999999999999887777789999999987543 6887665544
Q ss_pred Ccc
Q 025035 238 EHY 240 (259)
Q Consensus 238 ~h~ 240 (259)
.|.
T Consensus 124 l~~ 126 (231)
T TIGR02752 124 LRN 126 (231)
T ss_pred ccc
Confidence 433
No 29
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.11 E-value=1.7e-10 Score=105.47 Aligned_cols=79 Identities=28% Similarity=0.386 Sum_probs=63.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc---ceeE-EEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL---TYFI-CKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~---~fdv-v~~~v~ 237 (259)
.++.+|||||||+|.++..+++.|. +|+|||+|+.|++.|++++...+. .+++++++|+.++++ .||+ ++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3567999999999999999998876 899999999999999988765543 369999999887643 6885 455566
Q ss_pred Ccccc
Q 025035 238 EHYTF 242 (259)
Q Consensus 238 ~h~~~ 242 (259)
+|...
T Consensus 209 eHv~d 213 (322)
T PLN02396 209 EHVAN 213 (322)
T ss_pred HhcCC
Confidence 66643
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.11 E-value=1.7e-10 Score=101.92 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=63.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC----cceeEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI----LTYFICKSERNE 238 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~----~~fdvv~~~v~~ 238 (259)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...++. +++++++|+.++. ..||+|++..+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 467999999999999999999976 9999999999999999999888764 6999999987642 378876665554
Q ss_pred cc
Q 025035 239 HY 240 (259)
Q Consensus 239 h~ 240 (259)
|+
T Consensus 123 ~~ 124 (255)
T PRK11036 123 EW 124 (255)
T ss_pred Hh
Confidence 43
No 31
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=4.5e-10 Score=94.17 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=63.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~ 234 (259)
..+++|+|+|||||.+++..+-.|..+|+|+|+.+++++.+++|+.+. ..++.|+++|+.+....+|.++.
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~~~~dtvim 114 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFRGKFDTVIM 114 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcCCccceEEE
Confidence 467899999999999999999999889999999999999999999884 34899999999998888886543
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.09 E-value=8e-10 Score=91.96 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=64.6
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~ 240 (259)
++.+|||+|||+|.+++.+++++.. +|+++|+|+.+++.++++++.+++.+++++..|+.+.. ..||+|.++.-.|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 4779999999999999999998654 79999999999999999999999866999999998844 38998887765443
No 33
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.08 E-value=3.1e-10 Score=98.72 Aligned_cols=75 Identities=17% Similarity=0.021 Sum_probs=59.2
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH------------hcCCcceEEEEecccCCCc----
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSCIKFLVMNISVQIL---- 227 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~------------~~~l~~i~~i~~D~~~~~~---- 227 (259)
++.+||+.|||.|..+..|+.+|+ +|+|+|+|+.+|+.+.+... .....+|+++++|+.+++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 367999999999999999999999 89999999999999866321 1111379999999999752
Q ss_pred --ceeEEEecccCc
Q 025035 228 --TYFICKSERNEH 239 (259)
Q Consensus 228 --~fdvv~~~v~~h 239 (259)
.||.|+....++
T Consensus 122 ~~~fD~VyDra~~~ 135 (226)
T PRK13256 122 LPVFDIWYDRGAYI 135 (226)
T ss_pred cCCcCeeeeehhHh
Confidence 578766655443
No 34
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.08 E-value=4.7e-10 Score=82.57 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=56.5
Q ss_pred EEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCccc
Q 025035 169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHYT 241 (259)
Q Consensus 169 LDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~ 241 (259)
||+|||+|..+..+++++..+|+|+|+|+.+++.++++.... .+.++++|+.++++ +||+|++....|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec
Confidence 899999999999999995559999999999999999987654 35599999999876 89977766665544
No 35
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.03 E-value=4e-10 Score=97.72 Aligned_cols=77 Identities=23% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-c-----------CCcceEEEEecccCCCc----
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-D-----------GFSCIKFLVMNISVQIL---- 227 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~-----------~l~~i~~i~~D~~~~~~---- 227 (259)
++.+||..|||.|..+..|+++|+ +|+|+|+|+.+|+.+.+.... . ...+|++.++|+.+++.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 467999999999999999999998 999999999999998553321 0 11258999999999654
Q ss_pred ceeEEEecccCccc
Q 025035 228 TYFICKSERNEHYT 241 (259)
Q Consensus 228 ~fdvv~~~v~~h~~ 241 (259)
.||+|+....++.-
T Consensus 116 ~fD~iyDr~~l~Al 129 (218)
T PF05724_consen 116 KFDLIYDRTFLCAL 129 (218)
T ss_dssp SEEEEEECSSTTTS
T ss_pred CceEEEEecccccC
Confidence 68998887665443
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.03 E-value=9.7e-10 Score=96.05 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=61.8
Q ss_pred CCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc-ceeEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL-TYFICKSERNE 238 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~-~fdvv~~~v~~ 238 (259)
++.+|||||||+|..+..++++ +..+|+|+|+|+.|++.|++++...+. .+++++++|+.+.++ .+|++.+....
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 5679999999999999999885 234899999999999999999876553 369999999998765 56765555554
Q ss_pred cc
Q 025035 239 HY 240 (259)
Q Consensus 239 h~ 240 (259)
|+
T Consensus 133 ~~ 134 (239)
T TIGR00740 133 QF 134 (239)
T ss_pred hh
Confidence 44
No 37
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=9.7e-10 Score=98.74 Aligned_cols=70 Identities=29% Similarity=0.430 Sum_probs=59.6
Q ss_pred EEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecc
Q 025035 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSER 236 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v 236 (259)
+|||+|||+|.+++.++.... .+|+|+|+|+.+++.|++|++.+|+.++.++++|+... ...||++.++-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCC
Confidence 799999999999999999854 49999999999999999999999986777888887773 44788765543
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.03 E-value=1.6e-09 Score=96.31 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=66.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~ 237 (259)
.++.+|||||||+|..++.+++. +. .+|+|+|+|+.|++.|+++....++.+++|+++|+.++++ .||+++++.+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 46889999999999988877765 43 3799999999999999999988888789999999988654 7898877766
Q ss_pred Cccccc
Q 025035 238 EHYTFD 243 (259)
Q Consensus 238 ~h~~~D 243 (259)
.|...|
T Consensus 156 ~~~~~d 161 (272)
T PRK11873 156 INLSPD 161 (272)
T ss_pred ccCCCC
Confidence 555443
No 39
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.02 E-value=1.9e-09 Score=90.14 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-cceeEEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-LTYFICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-~~fdvv~~~v~~h 239 (259)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++++.++. +++++++|+.+.. ..||+++++...|
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVRGKFDVILFNPPYL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccCCcccEEEECCCCC
Confidence 3467899999999999999999876 899999999999999999988776 7899999987643 3788877766554
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.02 E-value=1.1e-09 Score=100.13 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc--ceeEEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL--TYFICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~--~fdvv~~~v~~h 239 (259)
.++++|||||||+|.++..++..|...|+|+|+|+.++..++...+..+. .+++++.+|+.+++. .||+|++..+.|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 35789999999999999999999876899999999999776554433321 369999999988764 789777654443
Q ss_pred c
Q 025035 240 Y 240 (259)
Q Consensus 240 ~ 240 (259)
+
T Consensus 201 H 201 (322)
T PRK15068 201 H 201 (322)
T ss_pred c
Confidence 3
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.01 E-value=1.4e-09 Score=93.08 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecc-cCCC-----cceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI-SVQI-----LTYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~-~~~~-----~~fdvv~~~ 235 (259)
.+.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|+++++..++.+++++++|+ ..++ ..||+++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4679999999999999999887 3348999999999999999999888877899999999 5432 257766543
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.00 E-value=1e-09 Score=96.50 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=60.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~ 240 (259)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.. .+.++++|+..+++ .||+|++....|.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 367899999999999999988865 99999999999999988642 35788999988654 7998888776665
Q ss_pred ccc
Q 025035 241 TFD 243 (259)
Q Consensus 241 ~~D 243 (259)
..|
T Consensus 116 ~~d 118 (251)
T PRK10258 116 CGN 118 (251)
T ss_pred cCC
Confidence 433
No 43
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.3e-09 Score=97.98 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=61.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC--cceeEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI--LTYFICKSERNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~--~~fdvv~~~v~~ 238 (259)
.++.+|||+|||+|.+++..++.|..+|+|+|+.+.+++.|++|+.++++.. ++....+....+ .+||+|..+++-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 5789999999999999999999999899999999999999999999998853 333334443322 278887777754
No 44
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.99 E-value=1.1e-09 Score=96.60 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~ 240 (259)
++.+|||||||+|.++..++++. ..+|+|+|+|+.|++.|+++ +++++++|+.+++ ..||+|++....|+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQW 101 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhhh
Confidence 56899999999999999999872 34899999999999999762 5789999988753 37998877777665
Q ss_pred ccc
Q 025035 241 TFD 243 (259)
Q Consensus 241 ~~D 243 (259)
..|
T Consensus 102 ~~d 104 (255)
T PRK14103 102 VPE 104 (255)
T ss_pred CCC
Confidence 544
No 45
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.99 E-value=3.5e-09 Score=82.08 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=58.5
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC----CcceeEEEe
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ----ILTYFICKS 234 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~----~~~fdvv~~ 234 (259)
++.+|||+|||+|.++..++++ +..+|+++|+|+.+++.++++++..++.+++++.+|+... ...||+++.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFI 94 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEE
Confidence 4679999999999999999987 3458999999999999999999888877899999887642 225665544
No 46
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.98 E-value=2e-09 Score=97.16 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CCcceeEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QILTYFICKSERNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~~~fdvv~~~v~~ 238 (259)
.++.+|||+|||+|.+++..++.|..+|+|+|+++.+++.|++|+..+++.. .+.+....+ ....||+|..+++.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccccccCCEEEECCCH
Confidence 5678999999999999999999999899999999999999999999999865 222222222 23589988888764
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.98 E-value=2.4e-09 Score=90.20 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~ 235 (259)
.++.+|||+|||+|.++..+++++ ..+|+++|+|+.+++.+++++++.++.+++++++|+... +..||+++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEEC
Confidence 357899999999999999999874 348999999999999999999888877799999987532 2357766544
No 48
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=1.8e-09 Score=95.13 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=61.0
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~ 240 (259)
++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++. .++.|+.+|+.+... .||++++....|.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChhh
Confidence 4689999999999999999987 3459999999999999998864 368899999876433 7888777777665
Q ss_pred ccc
Q 025035 241 TFD 243 (259)
Q Consensus 241 ~~D 243 (259)
..|
T Consensus 106 ~~d 108 (258)
T PRK01683 106 LPD 108 (258)
T ss_pred CCC
Confidence 544
No 49
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.96 E-value=3.4e-09 Score=91.36 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~ 235 (259)
.++.+|||||||+|.++..+++... .+|+++|+++.+++.|+++++..++.+++++++|+.+.. ..||+++..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 4578999999999999999998732 259999999999999999999999878999999987642 267765543
No 50
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.96 E-value=2.8e-09 Score=91.14 Aligned_cols=75 Identities=11% Similarity=-0.054 Sum_probs=62.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~ 237 (259)
..+.+|||+|||+|.+++.++.++..+|+++|.++.+++.++++++.+++.+++++++|+.+.. ..||+|+.+--
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 3467999999999999997666666799999999999999999999988878999999987632 25777665443
No 51
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.94 E-value=6.1e-09 Score=92.66 Aligned_cols=77 Identities=25% Similarity=0.269 Sum_probs=62.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe-cccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS-ERNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~-~v~~ 238 (259)
.++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++.... .++.|+++|+.+.++ .||+|++ ..+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 457899999999999999998752239999999999999999987542 369999999987543 7998777 4556
Q ss_pred ccc
Q 025035 239 HYT 241 (259)
Q Consensus 239 h~~ 241 (259)
|..
T Consensus 129 h~~ 131 (263)
T PTZ00098 129 HLS 131 (263)
T ss_pred hCC
Confidence 654
No 52
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=6.2e-09 Score=89.71 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~ 235 (259)
.++.+|||||||+|..+..+++. +. .+|+++|+++.+++.++++++..++.+++++++|..... ..||+|+..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 46789999999999999998887 32 489999999999999999999888878999999987642 267766543
No 53
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.92 E-value=3.2e-09 Score=81.98 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=61.5
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC-----cceeEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI-----LTYFICKSERNE 238 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~-----~~fdvv~~~v~~ 238 (259)
|.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++...++ .+++++++|+.+.. ..||+|..+.-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 358999999999999999999845999999999999999999999887 46999999998853 278877665544
No 54
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.92 E-value=4.2e-09 Score=92.93 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=56.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCcceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fdvv~~~v~ 237 (259)
.++.+|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|+++++.+++. ++.+..++. .||+++.+..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~ 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc
Confidence 468899999999999999988888767999999999999999999988873 355544432 5777665543
No 55
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.92 E-value=6.1e-09 Score=93.86 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC-CcceeEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ-ILTYFICKSERNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~-~~~fdvv~~~v~~ 238 (259)
.++.+|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|++++..+++.. +.+...+.... ...||++.++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH
Confidence 4678999999999999999998887799999999999999999999888753 66676654332 3378887776543
No 56
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.91 E-value=5.7e-09 Score=97.97 Aligned_cols=73 Identities=21% Similarity=0.109 Sum_probs=60.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSER 236 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v 236 (259)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.|++.|+++++.++. +++++++|+.+.. ..||+|.++-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECC
Confidence 35679999999999999999875 445899999999999999999988876 7999999986532 2578776654
No 57
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.91 E-value=4.8e-09 Score=95.64 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCCCc--ceeEEEecc-cC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQIL--TYFICKSER-NE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~~~--~fdvv~~~v-~~ 238 (259)
.++++|||||||+|.++..++..|...|+|+|+|+.|+.+++...+..+ ..++.++.+++.+++. .||+|++.. +.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY 199 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence 4578999999999999999999887689999999999987654333222 2368888888887654 899776554 44
Q ss_pred cc
Q 025035 239 HY 240 (259)
Q Consensus 239 h~ 240 (259)
|.
T Consensus 200 H~ 201 (314)
T TIGR00452 200 HR 201 (314)
T ss_pred cc
Confidence 54
No 58
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.91 E-value=3.3e-09 Score=96.72 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=61.0
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~ 235 (259)
++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|+++++.+++.+++|+++|+.+.. ..||++..+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 467999999999999999999874 99999999999999999999999877999999997742 246765543
No 59
>PRK14967 putative methyltransferase; Provisional
Probab=98.91 E-value=7e-09 Score=89.86 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSER 236 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v 236 (259)
++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.+++++...++ +++++++|+.+.. ..||+|.++.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~np 109 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNP 109 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECC
Confidence 4679999999999999999988766999999999999999999988876 6899999987632 3788777654
No 60
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.90 E-value=4.9e-09 Score=86.98 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~ 240 (259)
++.+|||||||+|.++..+++++ .+|+++|+++.+++.+++++.. ..+++++++|+.+.+. .+|.++++...|.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 46799999999999999999985 5999999999999999998754 2479999999998654 4788888776665
Q ss_pred cc
Q 025035 241 TF 242 (259)
Q Consensus 241 ~~ 242 (259)
..
T Consensus 90 ~~ 91 (169)
T smart00650 90 ST 91 (169)
T ss_pred HH
Confidence 43
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.90 E-value=4.4e-09 Score=89.35 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=55.4
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
...+|||||||+|.++..++++ +..+|+|+|+++.+++.|++++...++.+++++++|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence 3569999999999999999987 3448999999999999999999888888899999999763
No 62
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=1.1e-08 Score=87.74 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=60.4
Q ss_pred CCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC---cceeEEEeccc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI---LTYFICKSERN 237 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~---~~fdvv~~~v~ 237 (259)
++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..++. +++++++|+.+.. ..||+++....
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence 5679999999999999988876 2 348999999999999999999888875 4999999998743 26786555433
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.89 E-value=1.5e-09 Score=92.74 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=65.6
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~ 240 (259)
...+|.|||||+|..+..|+++ +.+.|+|||-|+.||+.|+++. .+++|..+|+.+... .+|+++++-++|.
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAvlqW 104 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAVLQW 104 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccchhhhhhhhhh
Confidence 4679999999999999999998 5569999999999999997754 489999999999655 8889888888877
Q ss_pred ccce
Q 025035 241 TFDL 244 (259)
Q Consensus 241 ~~D~ 244 (259)
..|-
T Consensus 105 lpdH 108 (257)
T COG4106 105 LPDH 108 (257)
T ss_pred cccc
Confidence 6653
No 64
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.88 E-value=7.6e-09 Score=93.13 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-Cc-ceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-IL-TYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~~-~fdvv~~~ 235 (259)
++.+|||+|||+|.+++.++++. ..+|+|+|+|+.+++.|+++++.+++. +++++++|+.+. +. .||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 35689999999999999999873 349999999999999999999988874 599999998653 22 68877765
No 65
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.88 E-value=4.8e-09 Score=92.13 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=62.1
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-----ceeEEEecc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-----TYFICKSER 236 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-----~fdvv~~~v 236 (259)
..++|||+|||+|.+++.++++ ...+|+|||+.+.+.+.|+++.+.+++. +|+++++|+.+... .||+|.++-
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 4789999999999999999999 5569999999999999999999988875 59999999998533 366554443
No 66
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.88 E-value=8.6e-09 Score=98.78 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec-ccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE-RNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~-v~~ 238 (259)
.++.+|||||||+|.++..+++....+|+|+|+|+.|++.|++++...+ .+++|+++|+.+.++ .||+|++. ++.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 4577999999999999999998633489999999999999998875433 269999999988653 69977665 444
Q ss_pred cc
Q 025035 239 HY 240 (259)
Q Consensus 239 h~ 240 (259)
|.
T Consensus 344 h~ 345 (475)
T PLN02336 344 HI 345 (475)
T ss_pred cc
Confidence 44
No 67
>PRK06202 hypothetical protein; Provisional
Probab=98.87 E-value=4.6e-09 Score=91.35 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=55.9
Q ss_pred CCCEEEEEccCcChhHHHHHhc----CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC---CcceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ---ILTYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~----g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~---~~~fdvv~~~ 235 (259)
++.+|||||||+|.++..|++. |. .+|+|+|+|+.|++.|+++.... ++++.+.+...+ +..||++.+.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEEC
Confidence 4679999999999999888753 32 38999999999999999876543 355555544433 3378977776
Q ss_pred ccCccccc
Q 025035 236 RNEHYTFD 243 (259)
Q Consensus 236 v~~h~~~D 243 (259)
...|+..|
T Consensus 137 ~~lhh~~d 144 (232)
T PRK06202 137 HFLHHLDD 144 (232)
T ss_pred CeeecCCh
Confidence 65554444
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.87 E-value=1.5e-08 Score=94.50 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCC---cceEEEEecccCCC--cceeEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVMNISVQI--LTYFICKSERNE 238 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l---~~i~~i~~D~~~~~--~~fdvv~~~v~~ 238 (259)
+.+|||+|||+|.+++.+++++ ..+|+++|+|+.|++.++++++.++. .+++++..|+.... ..||+|+++-..
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 4699999999999999999874 45999999999999999999987764 36899999987632 379988887666
Q ss_pred cc
Q 025035 239 HY 240 (259)
Q Consensus 239 h~ 240 (259)
|.
T Consensus 309 h~ 310 (378)
T PRK15001 309 HQ 310 (378)
T ss_pred cc
Confidence 54
No 69
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.86 E-value=8.1e-09 Score=88.99 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=60.0
Q ss_pred CEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC--cceeEEEecccCc
Q 025035 166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI--LTYFICKSERNEH 239 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~--~~fdvv~~~v~~h 239 (259)
++|||||||+|..+..+++.. ..+|+|+|+|+.+++.+++++...|+. ++++++.|+.+.+ ..||+|++..+.|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence 379999999999999999873 348999999999999999999887764 5999999986543 3788766544333
No 70
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.84 E-value=1.1e-08 Score=86.77 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++.+++++++|+.+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 35789999999999999999875 335999999999999999999998888789999999865
No 71
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.84 E-value=1.2e-08 Score=86.40 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CC----cceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QI----LTYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~----~~fdvv~~~v~ 237 (259)
.++.+|||||||+|.++..+++.....++|+|+|+.+++.++++ +++++++|+.+ .+ .+||+|++...
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 45779999999999999999876444899999999999988651 46788888865 21 26887666655
Q ss_pred Ccccc
Q 025035 238 EHYTF 242 (259)
Q Consensus 238 ~h~~~ 242 (259)
.|+..
T Consensus 85 l~~~~ 89 (194)
T TIGR02081 85 LQATR 89 (194)
T ss_pred hHcCc
Confidence 44443
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.81 E-value=2.3e-08 Score=87.27 Aligned_cols=73 Identities=29% Similarity=0.379 Sum_probs=61.8
Q ss_pred CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEeccc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERN 237 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~ 237 (259)
+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...++.+++++++|+.+.. ..||+|.++..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPP 163 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCC
Confidence 468999999999999999987 33499999999999999999999888877999999997632 37887766543
No 73
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.81 E-value=2.8e-08 Score=85.30 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=60.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~ 235 (259)
.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++++.++.+++++++|..+.. ..||+|+..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEc
Confidence 457899999999999999888875 389999999999999999999888878999999986632 367865544
No 74
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.81 E-value=2.3e-08 Score=84.01 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=57.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++.+++|||||+|.+++.++..+ ..+|+++|.++++++..++|+++.|++|+..+.+++.+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 568899999999999999999653 449999999999999999999999999999999999884
No 75
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.80 E-value=1.5e-08 Score=85.81 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=53.4
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC--CcceeEEEecccCcc
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ--ILTYFICKSERNEHY 240 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~--~~~fdvv~~~v~~h~ 240 (259)
.++||+|||+|.++..|+.+ +.+++++|+|+.+|+.|+++.... ++|+|+++|+.+. ...||+|...-+.|+
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 58999999999999999999 569999999999999999998643 5899999999884 338995443333333
No 76
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.80 E-value=2.1e-08 Score=88.94 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=63.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEecccCccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSERNEHYT 241 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~v~~h~~ 241 (259)
.++.+|||||||+|.++..+++++. +|+|+|+++.+++.+++++.. ..+++++++|+.+.+. .+|.+.++.-.+..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLPEFNKVVSNLPYQIS 104 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCchhceEEEEcCCcccC
Confidence 3578999999999999999999954 899999999999999988754 3479999999998654 66777777666554
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=2e-08 Score=90.30 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=59.9
Q ss_pred CEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC-c-ceeEEEec
Q 025035 166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI-L-TYFICKSE 235 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~-~-~fdvv~~~ 235 (259)
.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|+++++.+++.+ ++|+++|+.+.. . .||++.++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence 689999999999999999873 3489999999999999999999888754 999999987743 2 68877665
No 78
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.80 E-value=1.7e-08 Score=96.25 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=55.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|+++++.+++.+++|+++|+.+
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 356799999999999999999986 4999999999999999999998888789999999875
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.79 E-value=1.9e-08 Score=91.51 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=59.6
Q ss_pred CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-Cc-ceeEEEec
Q 025035 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-IL-TYFICKSE 235 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~~-~fdvv~~~ 235 (259)
.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+++++.+++. +++++++|+.+. +. .||+|.++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence 68999999999999999987 3459999999999999999999988875 599999998653 22 68877664
No 80
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.79 E-value=1.9e-08 Score=86.63 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=61.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH 239 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h 239 (259)
.+.+|||||||+|.++..+++.+. .+++++|+|+.+++.++++.. .++.++++|+.+.++ .||++++....|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 357899999999999999998853 378999999999999988654 268899999988653 789887777666
Q ss_pred cccc
Q 025035 240 YTFD 243 (259)
Q Consensus 240 ~~~D 243 (259)
+..|
T Consensus 110 ~~~~ 113 (240)
T TIGR02072 110 WCDD 113 (240)
T ss_pred hccC
Confidence 5544
No 81
>PRK06922 hypothetical protein; Provisional
Probab=98.79 E-value=2e-08 Score=98.54 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=63.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEecc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKSER 236 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~~v 236 (259)
.++.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|+++....+. ++.++++|+.+++ .+||++.+..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEEch
Confidence 46789999999999999988876 345999999999999999998765553 6889999988754 2789887776
Q ss_pred cCccc
Q 025035 237 NEHYT 241 (259)
Q Consensus 237 ~~h~~ 241 (259)
+.|..
T Consensus 496 vLH~L 500 (677)
T PRK06922 496 ILHEL 500 (677)
T ss_pred HHHhh
Confidence 66643
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=98.78 E-value=3.7e-08 Score=82.11 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=59.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCCc--ceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQIL--TYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~~--~fdvv~~~ 235 (259)
++.+|||+|||+|.++..+++++ .+|+|+|+|+.+++.+++++...+..+ +.++++|+.+... .||++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n 97 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN 97 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence 56799999999999999999985 499999999999999999998877654 8899999877432 57766544
No 83
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-08 Score=92.62 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC--C-cceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ--I-LTYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~--~-~~fdvv~~~v~ 237 (259)
++++.|||+|||+|.++.+.++.|..+|+++|.|. +++.|++.+..+++.+ |+++++.+++. | ...|+|.++..
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 57899999999999999999999999999999999 4599999999999877 89999988874 3 25666666554
No 84
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.77 E-value=1.8e-08 Score=97.53 Aligned_cols=71 Identities=25% Similarity=0.280 Sum_probs=59.4
Q ss_pred CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC--cceeEEEec
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI--LTYFICKSE 235 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~--~~fdvv~~~ 235 (259)
+.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+++++.+++. +++++++|+.+.. ..||++.++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence 468999999999999999876 4459999999999999999999888874 5999999986532 268877664
No 85
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.77 E-value=2.2e-08 Score=90.61 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=66.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCCCc-ceeEEEecccCcc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQIL-TYFICKSERNEHY 240 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~~~-~fdvv~~~v~~h~ 240 (259)
.++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++...+ ..+++++++|+.+... .+|++.++.-.++
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANVPYQI 113 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEecCCccc
Confidence 3578999999999999999999854 89999999999999999987665 3579999999987654 5777777766665
Q ss_pred ccce
Q 025035 241 TFDL 244 (259)
Q Consensus 241 ~~D~ 244 (259)
+..+
T Consensus 114 stpi 117 (294)
T PTZ00338 114 SSPL 117 (294)
T ss_pred CcHH
Confidence 5544
No 86
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.77 E-value=2.2e-08 Score=94.12 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=62.9
Q ss_pred cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCC-------cceeE
Q 025035 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQI-------LTYFI 231 (259)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~-------~~fdv 231 (259)
...++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.|+++++.+++. +++++++|+.+.. ..||+
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 44568899999999999999877777779999999999999999999999874 6999999998731 25776
Q ss_pred EEec
Q 025035 232 CKSE 235 (259)
Q Consensus 232 v~~~ 235 (259)
|+.+
T Consensus 297 VilD 300 (396)
T PRK15128 297 IVMD 300 (396)
T ss_pred EEEC
Confidence 6544
No 87
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.76 E-value=3.4e-08 Score=85.17 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=62.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc---ceeEEEeccc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL---TYFICKSERN 237 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~---~fdvv~~~v~ 237 (259)
++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.+++++...+. .+++++.+|+.+.+. .||+|.....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 46799999999999999999885 36999999999999999998876544 358999999987543 6887765554
Q ss_pred Cccc
Q 025035 238 EHYT 241 (259)
Q Consensus 238 ~h~~ 241 (259)
.|..
T Consensus 131 l~~~ 134 (239)
T PRK00216 131 LRNV 134 (239)
T ss_pred cccC
Confidence 4443
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.76 E-value=3.4e-08 Score=91.15 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=62.8
Q ss_pred CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecccCcc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSERNEHY 240 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v~~h~ 240 (259)
..+|||+|||+|.++..+++++ ..+|+++|+|+.|++.++++++.+++ ..+++..|+... ...||+|.++...|.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSDIKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccccCCCccEEEECCCccC
Confidence 4589999999999999999884 34899999999999999999998886 567788887653 347998888777775
No 89
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.76 E-value=2.4e-08 Score=80.68 Aligned_cols=70 Identities=29% Similarity=0.354 Sum_probs=50.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe---cccCCCcceeEEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM---NISVQILTYFICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~---D~~~~~~~fdvv~~~v~~h 239 (259)
.++.+|||||||.|.++..+++.|. +|+|+|+|+.+++. . ++.+... +.......||+|.+..+.|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R---NVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T---TSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h---hhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 5688999999999999999999888 99999999999988 1 3333333 2223344899655555544
Q ss_pred cccc
Q 025035 240 YTFD 243 (259)
Q Consensus 240 ~~~D 243 (259)
+..|
T Consensus 90 ~~~d 93 (161)
T PF13489_consen 90 HLPD 93 (161)
T ss_dssp GSSH
T ss_pred hccc
Confidence 4434
No 90
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.76 E-value=2.7e-08 Score=91.59 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH 239 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h 239 (259)
++.+|||||||+|.++..+++. +..+|+++|+|+.|++.|+++... .+++++.+|+.+.++ .||++++....|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 4679999999999999988876 345899999999999999987642 368899999988654 689766655444
Q ss_pred c
Q 025035 240 Y 240 (259)
Q Consensus 240 ~ 240 (259)
.
T Consensus 190 ~ 190 (340)
T PLN02490 190 Y 190 (340)
T ss_pred h
Confidence 3
No 91
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.76 E-value=9.1e-10 Score=82.88 Aligned_cols=74 Identities=24% Similarity=0.234 Sum_probs=46.0
Q ss_pred EEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEE---ecccCCCc--ceeEEEecccCcccc
Q 025035 169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNISVQIL--TYFICKSERNEHYTF 242 (259)
Q Consensus 169 LDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~---~D~~~~~~--~fdvv~~~v~~h~~~ 242 (259)
||||||+|.++..+.+. +..+++|+|+|+.|++.++++....+..+...+. .+..+... .||+|....+.|+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999988 3449999999999999999988776643444444 34333322 888666555555543
No 92
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.76 E-value=1.8e-08 Score=101.14 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=64.1
Q ss_pred ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC----CcceeEEE
Q 025035 160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ----ILTYFICK 233 (259)
Q Consensus 160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~----~~~fdvv~ 233 (259)
....++++|||+|||+|.+++.+++.|..+|+++|+|+.+++.|++|++.+++. +++++++|+.+. ...||+|+
T Consensus 534 ~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 534 GQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred HHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEE
Confidence 334568899999999999999999988778999999999999999999999885 699999998763 23677665
Q ss_pred ec
Q 025035 234 SE 235 (259)
Q Consensus 234 ~~ 235 (259)
.+
T Consensus 614 lD 615 (702)
T PRK11783 614 ID 615 (702)
T ss_pred EC
Confidence 43
No 93
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.76 E-value=2.8e-08 Score=84.31 Aligned_cols=74 Identities=12% Similarity=-0.043 Sum_probs=61.6
Q ss_pred cccchHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV 224 (259)
Q Consensus 151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~ 224 (259)
+++.+...+.....+.+|||++||+|.+++.++.+|..+|+++|.++.+++.++++++..++. +++++++|+.+
T Consensus 36 vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 36 VRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 333333433333568899999999999999999999889999999999999999999998875 58999999955
No 94
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.75 E-value=1.7e-08 Score=94.47 Aligned_cols=75 Identities=24% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEe-cccCcc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKS-ERNEHY 240 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~-~v~~h~ 240 (259)
.++.+|||||||+|.++..++++...+|+|+|+|+.+++.|++++. ++ ++++...|+.+....||.|.+ .+++|.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhcCCCCCEEEEeCchhhC
Confidence 4678999999999999999998732399999999999999999874 33 588899998877668886654 445554
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.75 E-value=3.9e-08 Score=83.67 Aligned_cols=72 Identities=26% Similarity=0.245 Sum_probs=58.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC----cceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI----LTYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~----~~fdvv~~ 234 (259)
.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++++..++ .+++++++|+.+.. ..||.++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 46789999999999999998875 3 34899999999999999999998884 57999999987631 24555443
No 96
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.73 E-value=3e-08 Score=88.70 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=60.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-c--eeEEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-T--YFICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~--fdvv~~~v~~h 239 (259)
.++.+|||||||+|.++..+++++. +|+|+|+++.|++.++++... .+++++++|+.+.+. . ++.+.++.-.+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence 3567999999999999999999976 999999999999999987642 479999999998765 2 35555555444
Q ss_pred cc
Q 025035 240 YT 241 (259)
Q Consensus 240 ~~ 241 (259)
.+
T Consensus 117 is 118 (272)
T PRK00274 117 IT 118 (272)
T ss_pred ch
Confidence 43
No 97
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.72 E-value=7.5e-08 Score=83.51 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=58.6
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSER 236 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v 236 (259)
++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++....+. ++.++..++.+.+ ..||+++...
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 578999999999999999998865 899999999999999998877665 6888888877643 3788665443
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.72 E-value=4.2e-08 Score=89.97 Aligned_cols=72 Identities=18% Similarity=0.058 Sum_probs=62.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~ 235 (259)
.++.+|||+|||+|.+++.++..+. +|+|+|+++.|++.++++++..|+.++.++++|+.+++. .||++..+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD 255 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence 4678999999999999999887765 999999999999999999999988778999999998754 67766554
No 99
>PRK08317 hypothetical protein; Provisional
Probab=98.72 E-value=8.4e-08 Score=82.41 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=60.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~ 237 (259)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++....+ .+++++++|+.+.++ .||+|+...+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEecccccCCCCCCCceEEEEech
Confidence 357899999999999999999872 3589999999999999998733222 479999999887543 7887666554
Q ss_pred Ccc
Q 025035 238 EHY 240 (259)
Q Consensus 238 ~h~ 240 (259)
.|.
T Consensus 97 ~~~ 99 (241)
T PRK08317 97 LQH 99 (241)
T ss_pred hhc
Confidence 443
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.71 E-value=6.3e-08 Score=85.92 Aligned_cols=73 Identities=26% Similarity=0.311 Sum_probs=59.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~ 235 (259)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++......+++++++|+.+.. ..||++.++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence 356799999999999999999873 4599999999999999999987333347999999987643 378877654
No 101
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.70 E-value=7.1e-08 Score=85.34 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=55.9
Q ss_pred CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEecc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKSER 236 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~~v 236 (259)
+.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|++.++ ++++++|+.+.. ..||++.++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECC
Confidence 458999999999999999876 33489999999999999999998765 478999987632 2578766554
No 102
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.70 E-value=6.4e-08 Score=88.56 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=60.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~ 235 (259)
.++.+|||||||+|.++..+++... .+|+++|+++.+++.|+++++..++.+++++++|+.+.. ..||+|...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 3568999999999999999998632 369999999999999999999888878999999987643 257765543
No 103
>PRK04148 hypothetical protein; Provisional
Probab=98.70 E-value=1.1e-07 Score=76.07 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCCEEEEEccCcCh-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc----ceeEEEecc--
Q 025035 164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL----TYFICKSER-- 236 (259)
Q Consensus 164 ~~~~VLDiGcG~G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~----~fdvv~~~v-- 236 (259)
++.+|||||||.|. ++..|++.|. +|+++|+++.+++.++++ .++++++|+.+..+ .+|++.+-.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 35789999999996 8999998887 999999999999888774 36899999999765 566655432
Q ss_pred ----------cCccccceeeeecccc
Q 025035 237 ----------NEHYTFDLYQIGYYMS 252 (259)
Q Consensus 237 ----------~~h~~~D~i~~~~~~~ 252 (259)
....-.|+++..++.+
T Consensus 88 ~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 88 RDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 1244556666666655
No 104
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.5e-08 Score=81.79 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEE
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICK 233 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~ 233 (259)
.++.+|||||||+|+.+--|++... +|+.+|..+...+.|+++++..|+.|+.++++|...-- .+||.|+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~ 143 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRII 143 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEE
Confidence 4688999999999999999999844 99999999999999999999999988999999998842 2677443
No 105
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.69 E-value=5.7e-08 Score=86.66 Aligned_cols=67 Identities=24% Similarity=0.229 Sum_probs=54.3
Q ss_pred CCCEEEEEccCcChhHHHHHhcC----CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g----~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~ 235 (259)
.+.+|||+|||+|.++..+++.. ...|+|+|+|+.|++.|+++. ++++|+++|+.++++ .||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence 35689999999999999988752 126999999999999998753 368999999998765 68877653
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.69 E-value=6.8e-08 Score=90.13 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=55.6
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+..+||||||+|.++..+|++ +...++|+|+++.+++.+.+++...++.|+.++++|+...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l 184 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL 184 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh
Confidence 3568999999999999999998 3349999999999999999999999998999999998753
No 107
>PRK04266 fibrillarin; Provisional
Probab=98.69 E-value=8.9e-08 Score=83.49 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=51.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.++++.. .++.++.+|+.+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~ 131 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK 131 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC
Confidence 46789999999999999999987 3348999999999999888877643 478999999875
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=9.8e-08 Score=85.74 Aligned_cols=80 Identities=24% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecccCcccc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSERNEHYTF 242 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v~~h~~~ 242 (259)
+.+|||+|||.|.+++.+++.. ..+|+.+|+|..+++.++++++.+++.+..+...|+.+. ...||.|.++--.|--.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~ 238 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGK 238 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCc
Confidence 4599999999999999999984 459999999999999999999999886655666666664 33799888887777544
Q ss_pred ce
Q 025035 243 DL 244 (259)
Q Consensus 243 D~ 244 (259)
++
T Consensus 239 ~v 240 (300)
T COG2813 239 AV 240 (300)
T ss_pred ch
Confidence 43
No 109
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.68 E-value=4.8e-08 Score=91.19 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=59.3
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICK 233 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~ 233 (259)
++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+++++.+++.+++|+++|+.+.. ..||+++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEE
Confidence 46799999999999999999876 499999999999999999999999878999999997632 1466543
No 110
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.67 E-value=1.3e-07 Score=81.51 Aligned_cols=72 Identities=21% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCC-cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~-~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~ 234 (259)
.++.+|||||||+|+.+..|+.. |.. +|+++|+.+..++.|++++...++.+++++++|...... +||.|+.
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v 147 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIV 147 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEE
Confidence 57899999999999999999987 432 699999999999999999999998899999999876321 5664443
No 111
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.67 E-value=1.1e-07 Score=85.54 Aligned_cols=76 Identities=20% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC--cceeEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI--LTYFICKSERNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~--~~fdvv~~~v~~ 238 (259)
.++++|||||||+|+++..++.+|.+.|+|||.+...+-+.+...+..|... +.++..-+++++ ..||+|++..++
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 5789999999999999999999999899999999987766555444444332 344434444443 389977666654
No 112
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.66 E-value=4.1e-08 Score=82.90 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----CcceeE-EEecc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----ILTYFI-CKSER 236 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~~~fdv-v~~~v 236 (259)
.++.+|||+|||.|.++..|.+....++.|+|+++..+..+.++ .+..+++|+.+. ..+||. |++..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 46899999999999999999986444899999999998888762 367899999883 227774 44444
Q ss_pred cC
Q 025035 237 NE 238 (259)
Q Consensus 237 ~~ 238 (259)
+.
T Consensus 85 LQ 86 (193)
T PF07021_consen 85 LQ 86 (193)
T ss_pred HH
Confidence 43
No 113
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.66 E-value=8.6e-08 Score=82.42 Aligned_cols=74 Identities=27% Similarity=0.415 Sum_probs=60.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERNE 238 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~~ 238 (259)
++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++...++.++++.+.|+.+.+ ..||+++.....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 477999999999999999998866 79999999999999999988776646899998887643 368876654433
No 114
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.65 E-value=9e-08 Score=83.83 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=64.6
Q ss_pred HHhhccCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-------
Q 025035 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ------- 225 (259)
Q Consensus 156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~------- 225 (259)
..++....++++|||||||+|..++.+++. +..+|+++|+++.+++.|++++++.|+. +|+++++|+.+.
T Consensus 60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence 333444467889999999999988888875 3459999999999999999999999985 599999999763
Q ss_pred --CcceeEEEecc
Q 025035 226 --ILTYFICKSER 236 (259)
Q Consensus 226 --~~~fdvv~~~v 236 (259)
...||+++.+.
T Consensus 140 ~~~~~fD~VfiDa 152 (234)
T PLN02781 140 DPKPEFDFAFVDA 152 (234)
T ss_pred CCCCCCCEEEECC
Confidence 23677766553
No 115
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=3.7e-08 Score=85.49 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=71.7
Q ss_pred chhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEcc
Q 025035 94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT 173 (259)
Q Consensus 94 ~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc 173 (259)
.+.|||.+|.....+|. +-.+|+.+.++.+.. ... ....+||+|||
T Consensus 35 ~~k~wD~fy~~~~~rFf----------------kdR~wL~~Efpel~~----------------~~~--~~~~~ilEvGC 80 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFF----------------KDRNWLLREFPELLP----------------VDE--KSAETILEVGC 80 (264)
T ss_pred hhhhhhhhhhhcccccc----------------chhHHHHHhhHHhhC----------------ccc--cChhhheeecc
Confidence 47899999987777665 345888876655421 000 11238999999
Q ss_pred CcChhHHHHHhcCC---CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035 174 GNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI 226 (259)
Q Consensus 174 G~G~~~~~la~~g~---~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~ 226 (259)
|.|....++.+-.. -.|+++|+|+.+|+..+++..... .++..-+.|+....
T Consensus 81 GvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~ 135 (264)
T KOG2361|consen 81 GVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPS 135 (264)
T ss_pred CCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchh
Confidence 99999999998732 289999999999999999876554 35666777777643
No 116
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.64 E-value=8e-08 Score=84.89 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=63.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-cee---EEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYF---ICKSERNE 238 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fd---vv~~~v~~ 238 (259)
.++.+|||||||+|.++..+++++. +|+++|+++.+++.++++... ..+++++++|+.+.+. .++ +++++.-.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPDFPKQLKVVSNLPY 104 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhHcCCcceEEEcCCh
Confidence 3567999999999999999999975 799999999999999987643 2479999999998766 455 67777666
Q ss_pred cccc
Q 025035 239 HYTF 242 (259)
Q Consensus 239 h~~~ 242 (259)
|...
T Consensus 105 ~i~~ 108 (253)
T TIGR00755 105 NISS 108 (253)
T ss_pred hhHH
Confidence 5543
No 117
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.64 E-value=1.4e-07 Score=85.46 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~~h 239 (259)
.+..+|||||||+|.+++.++++. ..+++++|. +.+++.+++++...++. +++++.+|+.+.+. .+|+++...+.|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh 226 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY 226 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhh
Confidence 456899999999999999999983 348999998 78999999999888875 59999999986332 467554434444
No 118
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.64 E-value=2.5e-07 Score=85.02 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=60.1
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-------CC---cceEEEEecccCC-------C
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF---SCIKFLVMNISVQ-------I 226 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-------~l---~~i~~i~~D~~~~-------~ 226 (259)
++.+|||||||.|..+..+...+...++|+|+|...|+.|+++.+.. .. -...|+++|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 57899999999999999999888889999999999999999998321 11 1467888888752 1
Q ss_pred --cceeEEEecccCccccc
Q 025035 227 --LTYFICKSERNEHYTFD 243 (259)
Q Consensus 227 --~~fdvv~~~v~~h~~~D 243 (259)
..||+|.+....|+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fe 160 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFE 160 (331)
T ss_dssp TTS-EEEEEEES-GGGGGS
T ss_pred cCCCcceeehHHHHHHhcC
Confidence 28999999999998874
No 119
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.63 E-value=1.8e-07 Score=79.87 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=61.8
Q ss_pred CCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNE 238 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~ 238 (259)
++.+|||+|||+|..+..+++... .+++++|+++.+++.++++.. ...+++++.+|+.+.++ .||++......
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 578999999999999999998854 389999999999999998875 22368999999988643 68877665554
Q ss_pred ccccc
Q 025035 239 HYTFD 243 (259)
Q Consensus 239 h~~~D 243 (259)
|...+
T Consensus 117 ~~~~~ 121 (223)
T TIGR01934 117 RNVTD 121 (223)
T ss_pred CCccc
Confidence 44333
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=1.4e-07 Score=89.92 Aligned_cols=72 Identities=15% Similarity=0.032 Sum_probs=60.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~ 234 (259)
.++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.+++++++.|+.+++++++|+.+... .||+|+.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 46789999999999999888875 234899999999999999999999998789999999987532 5776653
No 121
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.62 E-value=8.6e-08 Score=90.97 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=55.3
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
++.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|+++++.+++.+++|+++|+.+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET 351 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence 45799999999999999999875 4899999999999999999999998889999999875
No 122
>PLN02672 methionine S-methyltransferase
Probab=98.62 E-value=1.1e-07 Score=98.51 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCC----------------cceEEEEecccCCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----------------SCIKFLVMNISVQI 226 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l----------------~~i~~i~~D~~~~~ 226 (259)
++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|++.+++ .+++|+++|+.+..
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35689999999999999999873 35899999999999999999987643 25999999998743
Q ss_pred c----ceeEEEecc
Q 025035 227 L----TYFICKSER 236 (259)
Q Consensus 227 ~----~fdvv~~~v 236 (259)
. .||+|.++-
T Consensus 198 ~~~~~~fDlIVSNP 211 (1082)
T PLN02672 198 RDNNIELDRIVGCI 211 (1082)
T ss_pred cccCCceEEEEECC
Confidence 2 488766654
No 123
>PHA03411 putative methyltransferase; Provisional
Probab=98.61 E-value=1.3e-07 Score=84.36 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=56.4
Q ss_pred CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH 239 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h 239 (259)
..+|||+|||+|.+++.++++. ..+|+|+|+|+.|++.++++. .+++++++|+.+... .||+|+++--.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCcc
Confidence 5699999999999999888762 359999999999999998863 368899999988543 688776655443
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=1.8e-07 Score=89.22 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=62.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~ 235 (259)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++++.|+.+++++++|+.+.. ..||+|+.+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 46789999999999999999986 24589999999999999999999999878999999998753 257766554
No 125
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.61 E-value=1.3e-07 Score=90.72 Aligned_cols=75 Identities=23% Similarity=0.319 Sum_probs=58.1
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC--CC---cceeEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV--QI---LTYFICKSERNE 238 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~--~~---~~fdvv~~~v~~ 238 (259)
++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++... ...+++++++|+.+ .+ ..||+|++....
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 467999999999999999999854 99999999999998766332 23479999999864 22 278877776655
Q ss_pred ccc
Q 025035 239 HYT 241 (259)
Q Consensus 239 h~~ 241 (259)
|+.
T Consensus 114 ~~l 116 (475)
T PLN02336 114 MYL 116 (475)
T ss_pred HhC
Confidence 543
No 126
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.60 E-value=1.4e-07 Score=85.10 Aligned_cols=98 Identities=24% Similarity=0.343 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHH
Q 025035 125 MDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ 204 (259)
Q Consensus 125 ~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~ 204 (259)
+.++..|++..+...+. .++..+|++|||.|..++..-+.|...++|+||++..|+.|+
T Consensus 99 lRnfNNwIKs~LI~~y~---------------------~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~ 157 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLYT---------------------KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQAR 157 (389)
T ss_pred hhhhhHHHHHHHHHHHh---------------------ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHH
Confidence 67888999875422211 246789999999999999999999889999999999999999
Q ss_pred HHhHhcC------CcceEEEEecccCC--------Cc-ceeEEEecccCccccc
Q 025035 205 SLANRDG------FSCIKFLVMNISVQ--------IL-TYFICKSERNEHYTFD 243 (259)
Q Consensus 205 ~~~~~~~------l~~i~~i~~D~~~~--------~~-~fdvv~~~v~~h~~~D 243 (259)
++.+... +-.+.|+++|.... +. .||+|.+....|+.|.
T Consensus 158 ~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe 211 (389)
T KOG1975|consen 158 KRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE 211 (389)
T ss_pred HHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeec
Confidence 9875432 11478999998762 22 4999999999999874
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.60 E-value=1.5e-07 Score=83.86 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~ 234 (259)
.++.+|||+|||+|..+..+++. + ...|+++|+++.+++.+++++++.++.++++++.|....+. .||.|+.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 46789999999999999999886 2 24899999999999999999999998789999999876432 4676553
No 128
>PLN03075 nicotianamine synthase; Provisional
Probab=98.60 E-value=2.2e-07 Score=83.87 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=57.8
Q ss_pred CCCEEEEEccCcChh-HHHHHh-c-CCCcEEEEeCCHHHHHHHHHHhHh-cCCc-ceEEEEecccCCC---cceeEEEec
Q 025035 164 SSWSVLDIGTGNGLL-LQELSK-Q-GFSDLTGVDYSEDAINLAQSLANR-DGFS-CIKFLVMNISVQI---LTYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~-~~~la~-~-g~~~V~giD~S~~~i~~a~~~~~~-~~l~-~i~~i~~D~~~~~---~~fdvv~~~ 235 (259)
++.+|+|||||.|-+ ++.+++ . +..+++|+|+++.+++.|++.++. .++. +++|.++|+.+.. ..||+|+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999997744 443443 3 344899999999999999999964 6775 4999999998753 389988877
Q ss_pred cc
Q 025035 236 RN 237 (259)
Q Consensus 236 v~ 237 (259)
.+
T Consensus 203 AL 204 (296)
T PLN03075 203 AL 204 (296)
T ss_pred cc
Confidence 43
No 129
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=2.2e-07 Score=82.13 Aligned_cols=57 Identities=32% Similarity=0.383 Sum_probs=49.1
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEe
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVM 220 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~ 220 (259)
++..|||+|||+|.+++.++.. +...|+++|.|+.+|.+|.+|++++++.+ +..++-
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 4568999999999999999987 65699999999999999999999998754 666643
No 130
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.58 E-value=1.5e-07 Score=85.30 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=50.9
Q ss_pred CCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~ 224 (259)
++.+|||+|||+|..+..|++.. ..+|+++|+|+.|++.+++++.... ..++.++++|+.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 46799999999999999999883 2489999999999999999876532 1258889999987
No 131
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=2.4e-07 Score=88.11 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=62.2
Q ss_pred cCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEe
Q 025035 161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKS 234 (259)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~ 234 (259)
...++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++++++.|+.+++++++|+..++ ..||.|+.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3356789999999999999998886 23489999999999999999999999877999999988754 25776553
No 132
>PHA03412 putative methyltransferase; Provisional
Probab=98.57 E-value=1.4e-07 Score=82.42 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=56.8
Q ss_pred CCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNE 238 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~ 238 (259)
+.+|||+|||+|.++..++++ +..+|+++|+++.+++.|+++. .++.++++|+....+ .||+|.++--.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPPY 124 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPPF 124 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCCC
Confidence 679999999999999999875 2348999999999999999764 258899999976433 68887776554
Q ss_pred c
Q 025035 239 H 239 (259)
Q Consensus 239 h 239 (259)
+
T Consensus 125 ~ 125 (241)
T PHA03412 125 G 125 (241)
T ss_pred C
Confidence 4
No 133
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=2.8e-07 Score=87.63 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=61.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-------cceeEEE
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-------LTYFICK 233 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-------~~fdvv~ 233 (259)
.++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++++.|+.+++++++|+.+.+ ..||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 46789999999999999999986 2 3489999999999999999999999988999999998754 2567555
Q ss_pred e
Q 025035 234 S 234 (259)
Q Consensus 234 ~ 234 (259)
.
T Consensus 331 ~ 331 (434)
T PRK14901 331 L 331 (434)
T ss_pred E
Confidence 3
No 134
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.5e-08 Score=77.07 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeE
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFI 231 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdv 231 (259)
..+++++|+|||.|.+++..+..+...|+|+|+.+.+++.+++|+....+ ++.++++|+.++.+ .||.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDt 117 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDT 117 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEee
Confidence 46899999999999999888877777999999999999999999998877 78999999988644 4553
No 135
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.54 E-value=4.2e-07 Score=66.32 Aligned_cols=73 Identities=27% Similarity=0.259 Sum_probs=56.7
Q ss_pred EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecccCc
Q 025035 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERNEH 239 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~~h 239 (259)
+|||+|||.|..+..+++.+..+++++|+++.+++.+++.....+..+++++..|+.+.. ..+|+++.....+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999999998545699999999999999986544444457999999988853 2677666555443
No 136
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.53 E-value=1.2e-07 Score=80.13 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=66.7
Q ss_pred cchhccccchHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEeccc
Q 025035 146 NHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNIS 223 (259)
Q Consensus 146 ~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~ 223 (259)
+..+..++.+...+... ..+.++||+.||+|.+++..+.+|+.+|+.||.++.+++..++|++..++.+ ++.+++|..
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 33445555555555554 5789999999999999999999999999999999999999999999988865 899999965
Q ss_pred CC-------CcceeEEEecc
Q 025035 224 VQ-------ILTYFICKSER 236 (259)
Q Consensus 224 ~~-------~~~fdvv~~~v 236 (259)
.. ...||+|+.+-
T Consensus 103 ~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--
T ss_pred HHHHhhcccCCCceEEEECC
Confidence 42 23788776543
No 137
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.53 E-value=2.6e-07 Score=79.38 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=50.1
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CCc---ceeE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QIL---TYFI 231 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~~---~fdv 231 (259)
.+.-|||||||+|.-+..|...|. ..+|+|+|+.|++.|.+..- .-.++.+|+-+ +++ .||-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccce
Confidence 367899999999999999999886 89999999999999997321 23578888887 333 7883
No 138
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=3.9e-07 Score=86.49 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=60.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~ 234 (259)
.++.+|||+|||+|..+..+++.+. .+|+++|+|+.+++.+++++++.|+ +++++++|+.+.+ ..||.|+.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEE
Confidence 5678999999999999999998743 4899999999999999999999887 5789999998643 25776553
No 139
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.51 E-value=2.3e-07 Score=86.03 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|+++++.+++.+++|+++|+.+
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 3479999999999999998874 5999999999999999999999998889999999876
No 140
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.51 E-value=1.1e-06 Score=80.45 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=56.2
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc-CCc-ceEEEE-ecccCC-------CcceeEE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLV-MNISVQ-------ILTYFIC 232 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~-~l~-~i~~i~-~D~~~~-------~~~fdvv 232 (259)
.+.+|||||||+|.+...++.+ ...+++|+|+++.+++.|+++++.+ ++. +|++.+ .+.... ...||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 3579999999999888777765 2348999999999999999999998 675 477754 232221 1256766
Q ss_pred EecccCccc
Q 025035 233 KSERNEHYT 241 (259)
Q Consensus 233 ~~~v~~h~~ 241 (259)
.++--.|..
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 655544443
No 141
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.48 E-value=4.3e-07 Score=78.19 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC-C-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----------cce
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----------LTY 229 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----------~~f 229 (259)
.++.+|||||||+|.++..++++. . .+|+|||+++ | .++.+++++++|+.+.. ..+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 467899999999999999999873 2 4899999998 2 12346899999999842 268
Q ss_pred eEEEecccCcc
Q 025035 230 FICKSERNEHY 240 (259)
Q Consensus 230 dvv~~~v~~h~ 240 (259)
|+|++++..|.
T Consensus 119 D~V~S~~~~~~ 129 (209)
T PRK11188 119 QVVMSDMAPNM 129 (209)
T ss_pred CEEecCCCCcc
Confidence 88887765544
No 142
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=6.9e-07 Score=84.81 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=57.1
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI 226 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~ 226 (259)
++.+|||+-||.|.+++.|+++. .+|+|+|+++.+++.|+++++.+++.|++|+.+++++..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 55799999999999999999874 499999999999999999999999989999999998843
No 143
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.47 E-value=3.6e-07 Score=84.99 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=53.6
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+|||++||+|.+++.+++. ..+|+|+|+|+.|++.++++++.+++.+++|+++|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 57999999999999988886 45999999999999999999999998889999999876
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.44 E-value=4.9e-07 Score=77.08 Aligned_cols=59 Identities=25% Similarity=0.409 Sum_probs=51.7
Q ss_pred CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
..+||||||.|.++..+|+. +...++|+|++...+..+.+++...++.|+.++++|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 38999999999999999998 445999999999999999999999999999999999988
No 145
>PRK04457 spermidine synthase; Provisional
Probab=98.44 E-value=7.9e-07 Score=79.15 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=58.2
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC----CcceeEEEec
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ----ILTYFICKSE 235 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~----~~~fdvv~~~ 235 (259)
++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++...+. ++++++++|+.+. +..||+|+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4679999999999999999876 445899999999999999998765443 4799999998652 3367876654
No 146
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.43 E-value=6.6e-07 Score=81.19 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=63.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC--CcceeEEEecc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ--ILTYFICKSER 236 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~--~~~fdvv~~~v 236 (259)
++++.|||+|||+|.++.+.++.|..+|.+++-|+ |.+.|++..+.+++. +|+.|.+-+++. |...|+++++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEP 251 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEP 251 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEecc
Confidence 57889999999999999999999999999999998 999999999888775 599999999885 44778776653
No 147
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.42 E-value=4.8e-07 Score=84.64 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=66.5
Q ss_pred HhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCCc-------
Q 025035 157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQIL------- 227 (259)
Q Consensus 157 ~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~~------- 227 (259)
..+....++++||++.|=||.+++..+..|.++||+||.|..+|+.|++|++.+|+. .+.|+++|+.+...
T Consensus 210 ~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~ 289 (393)
T COG1092 210 RALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGE 289 (393)
T ss_pred HHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCC
Confidence 334444569999999999999999999999989999999999999999999999984 48999999988422
Q ss_pred ceeEEEe
Q 025035 228 TYFICKS 234 (259)
Q Consensus 228 ~fdvv~~ 234 (259)
.||+|+.
T Consensus 290 ~fDlIil 296 (393)
T COG1092 290 KFDLIIL 296 (393)
T ss_pred cccEEEE
Confidence 7887653
No 148
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.41 E-value=4.7e-07 Score=80.70 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCCEEEEEccCcCh----hHHHHHhcC------CCcEEEEeCCHHHHHHHHHHhHh----cC------------------
Q 025035 164 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLANR----DG------------------ 211 (259)
Q Consensus 164 ~~~~VLDiGcG~G~----~~~~la~~g------~~~V~giD~S~~~i~~a~~~~~~----~~------------------ 211 (259)
++.+|||+|||+|. +++.+++.+ ..+|+|+|+|+.||+.|++..-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35699999999997 455555541 13899999999999999985310 01
Q ss_pred ----C-cceEEEEecccCCCc---ceeEEEecccCc
Q 025035 212 ----F-SCIKFLVMNISVQIL---TYFICKSERNEH 239 (259)
Q Consensus 212 ----l-~~i~~i~~D~~~~~~---~fdvv~~~v~~h 239 (259)
+ .+|+|.++|+.+.+. .||+|++..+.|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~ 214 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLI 214 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHH
Confidence 1 258999999998643 688666644443
No 149
>PTZ00146 fibrillarin; Provisional
Probab=98.40 E-value=9.7e-07 Score=79.48 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=55.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC------CcceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ------ILTYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~------~~~fdvv~~ 234 (259)
.++.+|||+|||+|.++..+++. + ...|+++|+|+.|++.+.+.++.. .||.+++.|+... ...+|+|+.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 46789999999999999999998 3 248999999998765555554332 4789999998753 125777776
Q ss_pred ccc
Q 025035 235 ERN 237 (259)
Q Consensus 235 ~v~ 237 (259)
.+.
T Consensus 209 Dva 211 (293)
T PTZ00146 209 DVA 211 (293)
T ss_pred eCC
Confidence 664
No 150
>PRK00811 spermidine synthase; Provisional
Probab=98.40 E-value=1.3e-06 Score=78.56 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC-----CcceEEEEecccCC----CcceeEEE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVMNISVQ----ILTYFICK 233 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~-----l~~i~~i~~D~~~~----~~~fdvv~ 233 (259)
.+.+||+||||.|..+..++++ +..+|++||+++.+++.|++.+...+ -++++++.+|+.+. ...||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999987 56699999999999999999876432 23699999998763 23788877
Q ss_pred ecccC
Q 025035 234 SERNE 238 (259)
Q Consensus 234 ~~v~~ 238 (259)
.+...
T Consensus 156 ~D~~d 160 (283)
T PRK00811 156 VDSTD 160 (283)
T ss_pred ECCCC
Confidence 76543
No 151
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.39 E-value=7e-07 Score=73.94 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=49.7
Q ss_pred EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~ 225 (259)
.|||+.||.|..++.+|+. +.+|++||+++..++.|+.|++-.|+. +|+|+++|+.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~ 60 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL 60 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH
Confidence 6999999999999999998 459999999999999999999999975 699999999884
No 152
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.39 E-value=1.8e-06 Score=73.97 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=50.9
Q ss_pred cCCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC
Q 025035 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI 226 (259)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~ 226 (259)
...++.+|||+.||.|.+++.+++. ..+.|+++|+++.+++.++++++.+++.+ |..+++|..+..
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 3456889999999999999999983 34489999999999999999999999865 899999998853
No 153
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.37 E-value=7.2e-07 Score=76.62 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=76.1
Q ss_pred CchhhHHHHHHHHHhhhhcc-CCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEE
Q 025035 93 GLQSYWDSAYADELANFREH-GHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDI 171 (259)
Q Consensus 93 ~~~~yWd~~Y~~~~~~f~~~-g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDi 171 (259)
....||..+|. ....|.+. +-.-+.||.-+... ....+... +........|+|.
T Consensus 47 ~l~kywk~ryr-lfsrfd~gi~md~e~wfsvTpe~-ia~~iA~~-----------------------v~~~~~~~~iida 101 (263)
T KOG2730|consen 47 ELFKYWKNRYR-LFSRFDSGIYMDREGWFSVTPEK-IAEHIANR-----------------------VVACMNAEVIVDA 101 (263)
T ss_pred HHHHHHHHHHH-HHHhhccceeecccceEEeccHH-HHHHHHHH-----------------------HHHhcCcchhhhh
Confidence 35889999875 33444433 23445577654332 22222211 1111234689999
Q ss_pred ccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035 172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ 225 (259)
Q Consensus 172 GcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~ 225 (259)
.||.|..++.++.++. .|++||+++.-|..|++|++-.|++ +|+|+++|+.++
T Consensus 102 f~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 102 FCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred hhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 9999999999999876 9999999999999999999999997 499999999884
No 154
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.36 E-value=4.2e-07 Score=78.15 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=61.4
Q ss_pred cCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC---------Ccc
Q 025035 161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ---------ILT 228 (259)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~---------~~~ 228 (259)
...++++||+||||+|.-++.+++. + ..+|+.+|+++...+.|++++++.|+. +|+++.+|+.+. ...
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3356789999999999999999986 2 349999999999999999999999985 599999999762 125
Q ss_pred eeEEEecc
Q 025035 229 YFICKSER 236 (259)
Q Consensus 229 fdvv~~~v 236 (259)
||+|+.+.
T Consensus 122 fD~VFiDa 129 (205)
T PF01596_consen 122 FDFVFIDA 129 (205)
T ss_dssp EEEEEEES
T ss_pred eeEEEEcc
Confidence 78766554
No 155
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=2.9e-06 Score=72.34 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=55.1
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceE-EEEecccCCCc----ceeEEE
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVMNISVQIL----TYFICK 233 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~-~i~~D~~~~~~----~fdvv~ 233 (259)
..||++|||+|..-.++--.+..+||++|+++.|-+.+.+.++.....++. |++++.++++. ++|+|.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 468999999999887766554459999999999999999998877655665 99999999773 666443
No 156
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.32 E-value=1.1e-06 Score=81.50 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=48.2
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+|||+.||.|.+++.|++.. .+|+|||+++.+++.|+++++.+++.|++|+++++.+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 489999999999999999984 4999999999999999999999999999999987765
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.32 E-value=9.9e-07 Score=77.01 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~ 202 (259)
.++.+|||+|||+|.++..+++.|..+|+|+|+++.|+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3578999999999999999999988799999999988765
No 158
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.31 E-value=2.2e-06 Score=72.22 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----------cce
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----------LTY 229 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----------~~f 229 (259)
.++.+|||+|||+|.++..++++. ..+|+++|+|+.+ +..+++++++|+.+.. ..|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 568899999999999999888763 3479999999854 1236888999987632 257
Q ss_pred eEEEecc
Q 025035 230 FICKSER 236 (259)
Q Consensus 230 dvv~~~v 236 (259)
|+++++.
T Consensus 100 D~V~~~~ 106 (188)
T TIGR00438 100 DVVMSDA 106 (188)
T ss_pred cEEEcCC
Confidence 8776644
No 159
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=2.1e-06 Score=78.91 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=71.3
Q ss_pred chHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCcceeEE
Q 025035 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQILTYFIC 232 (259)
Q Consensus 154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~~fdvv 232 (259)
+-.+.+.....|.+|||+-+|-|.+++.+++.|..+|+++|+++.+++.+++|++.+++.+ +..+++|........
T Consensus 178 ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--- 254 (341)
T COG2520 178 ERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--- 254 (341)
T ss_pred HHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---
Confidence 3334444556789999999999999999999987679999999999999999999999876 899999998854321
Q ss_pred EecccCccccceeeeecccc
Q 025035 233 KSERNEHYTFDLYQIGYYMS 252 (259)
Q Consensus 233 ~~~v~~h~~~D~i~~~~~~~ 252 (259)
..+|.+++|+-.+
T Consensus 255 -------~~aDrIim~~p~~ 267 (341)
T COG2520 255 -------GVADRIIMGLPKS 267 (341)
T ss_pred -------ccCCEEEeCCCCc
Confidence 4555666665443
No 160
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.28 E-value=1.8e-06 Score=77.74 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=58.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC------CcceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ------ILTYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~------~~~fdvv~~ 234 (259)
.++++|||+-|=+|.+++..+..|..+|++||.|..+++.+++|+..+|+. +++|+++|+.+. ...||+|..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 468899999999999999999888889999999999999999999999874 599999999872 127776543
No 161
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.27 E-value=3.7e-06 Score=79.85 Aligned_cols=71 Identities=10% Similarity=-0.029 Sum_probs=56.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC-----cceeEEE
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI-----LTYFICK 233 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~-----~~fdvv~ 233 (259)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++++.|+. +++++++|..+.. ..||.|+
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 46789999999999999999986 4358999999999999999999999875 2445777766532 2466554
No 162
>PLN02476 O-methyltransferase
Probab=98.26 E-value=3.2e-06 Score=75.77 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=60.7
Q ss_pred cchHHhhccCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV 224 (259)
Q Consensus 153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~ 224 (259)
..+..++....++++|||||||+|..++.++.. + ..+|+++|.++++++.|++++++.|+. +|+++.+|+.+
T Consensus 107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 444455555567899999999999999999975 2 237999999999999999999999986 59999999866
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.26 E-value=2.2e-06 Score=74.80 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=55.1
Q ss_pred CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
..+||||||.|.++..+|++ +...++|||+....+..|.+.+...++.|+.+++.|+...
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~ 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence 47999999999999999998 4448999999999999999999999988999999999883
No 164
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.26 E-value=4.7e-06 Score=70.32 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=77.7
Q ss_pred ccccchhccccchHHhhcc-CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEe
Q 025035 143 HMLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVM 220 (259)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~ 220 (259)
.+.+..+..++.+...+.. ...+.++||+-+|+|.+++..+.+|..+++.||.+..++...++|.+..++. +.+++..
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 3445566667777777777 4789999999999999999999999999999999999999999999988853 6889999
Q ss_pred cccCC----Cc--ceeEEEecccC
Q 025035 221 NISVQ----IL--TYFICKSERNE 238 (259)
Q Consensus 221 D~~~~----~~--~fdvv~~~v~~ 238 (259)
|+... .. .||+|+.+--.
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPY 124 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCC
Confidence 98842 22 38887765443
No 165
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.25 E-value=3.6e-06 Score=74.48 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEecccCcc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERNEHY 240 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~~h~ 240 (259)
.++..||++|.|+|.++..|.+.|. +|+++++.+.|+....++.+..... .++.+++|....++ .||+|..++-..+
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQI 135 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCccc
Confidence 4678999999999999999999976 9999999999999999987654433 48999999999875 7899988776666
Q ss_pred ccceee
Q 025035 241 TFDLYQ 246 (259)
Q Consensus 241 ~~D~i~ 246 (259)
+.++++
T Consensus 136 SSp~vf 141 (315)
T KOG0820|consen 136 SSPLVF 141 (315)
T ss_pred cCHHHH
Confidence 555543
No 166
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.23 E-value=4.9e-06 Score=79.46 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=56.5
Q ss_pred CCEEEEEccCcChhHHHHHhcC-----CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc--ceeEEEecc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL--TYFICKSER 236 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-----~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~--~fdvv~~~v 236 (259)
+..|||||||+|.++...++.+ ..+|++|+.|+.++...+++.+.++.. +|+++++|+++... ..|++.++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5789999999999998877764 459999999999998888877777774 59999999999644 799988887
Q ss_pred cC
Q 025035 237 NE 238 (259)
Q Consensus 237 ~~ 238 (259)
+-
T Consensus 267 LG 268 (448)
T PF05185_consen 267 LG 268 (448)
T ss_dssp -B
T ss_pred cC
Confidence 63
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.20 E-value=7.4e-06 Score=68.86 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=54.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCC-Cc---------EEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---c
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGF-SD---------LTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---T 228 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~---------V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~ 228 (259)
.++..|||..||+|.+++..+..+. .. ++|+|+++.+++.|++|++..++.. |.+.+.|+.++++ .
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 3567999999999999998877632 13 8899999999999999999998864 8999999999773 5
Q ss_pred eeEEEe
Q 025035 229 YFICKS 234 (259)
Q Consensus 229 fdvv~~ 234 (259)
+|+|..
T Consensus 107 ~d~Ivt 112 (179)
T PF01170_consen 107 VDAIVT 112 (179)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 565443
No 168
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=4.9e-06 Score=73.74 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcc----eeEEEecccCc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILT----YFICKSERNEH 239 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~----fdvv~~~v~~h 239 (259)
++..|||||+|.|.++..|++++. +|+++++.+.++...++.... ..+++.+.+|+.+..+. +..|.+++-.+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 467999999999999999999976 899999999999999998752 24799999999997653 46677777666
Q ss_pred cccceee
Q 025035 240 YTFDLYQ 246 (259)
Q Consensus 240 ~~~D~i~ 246 (259)
++.+++.
T Consensus 107 Isspii~ 113 (259)
T COG0030 107 ISSPILF 113 (259)
T ss_pred ccHHHHH
Confidence 6655543
No 169
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.7e-06 Score=82.25 Aligned_cols=62 Identities=26% Similarity=0.340 Sum_probs=56.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
..+..+||+.||+|.+++.+++. ..+|+||++++.+++-|+.+++.+|++|.+|+++-++++
T Consensus 382 ~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 35678999999999999999986 669999999999999999999999999999999966663
No 170
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.18 E-value=6.4e-06 Score=65.77 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=53.1
Q ss_pred EEEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035 167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL 227 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~ 227 (259)
.|||+|||.|.++..+++.+.. +|+++|+++.+++.++++++.+++.++++++..+.+...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~g 62 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRDG 62 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCCC
Confidence 4899999999999999988653 799999999999999999988887778888888776544
No 171
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.17 E-value=4.6e-06 Score=74.48 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEe
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKS 234 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~ 234 (259)
.+.+||+||||+|..+..+++.+ ..+|+++|+++.+++.+++.+...+ .++++++.+|..+. ...||+|..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 35699999999999999998874 5689999999999999999875432 13688888887652 347887766
Q ss_pred ccc
Q 025035 235 ERN 237 (259)
Q Consensus 235 ~v~ 237 (259)
+..
T Consensus 152 D~~ 154 (270)
T TIGR00417 152 DST 154 (270)
T ss_pred eCC
Confidence 543
No 172
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.16 E-value=3.9e-06 Score=78.63 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=58.7
Q ss_pred CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEe
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKS 234 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~ 234 (259)
+.+|||++||+|..++.++.. +..+|+++|+++.+++.+++|++.+++.++++.++|+.... ..||+|..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 358999999999999999876 54589999999999999999999999877889999987632 35675543
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.14 E-value=8.3e-06 Score=68.11 Aligned_cols=61 Identities=21% Similarity=0.332 Sum_probs=45.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC--C-cceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~--l-~~i~~i~~D~~~ 224 (259)
.++.+|||||||+|..++.+++. +..+|+..|+.+ .++.++.+++.++ . .++++...|+.+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~ 108 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD 108 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence 46889999999999999999998 667999999999 9999999998876 2 358888888866
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.10 E-value=1.2e-06 Score=75.84 Aligned_cols=42 Identities=36% Similarity=0.476 Sum_probs=37.6
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA 207 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~ 207 (259)
-.++||+|||||..+..+... ..+++|+|+|++|++.|.++-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg 167 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG 167 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc
Confidence 369999999999999999888 459999999999999998853
No 175
>PLN02366 spermidine synthase
Probab=98.09 E-value=1.9e-05 Score=71.98 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=59.4
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccC----C-CcceeEEE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISV----Q-ILTYFICK 233 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~----~-~~~fdvv~ 233 (259)
.+++||+||||.|..+..+++.+ ..+|+.+|+++.+++.|++.+... ++ ++++++.+|+.. . ...||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 46899999999999999999884 458999999999999999987542 22 369999999754 2 23688877
Q ss_pred ecccC
Q 025035 234 SERNE 238 (259)
Q Consensus 234 ~~v~~ 238 (259)
.+...
T Consensus 171 ~D~~d 175 (308)
T PLN02366 171 VDSSD 175 (308)
T ss_pred EcCCC
Confidence 65543
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.08 E-value=1.8e-05 Score=68.61 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=61.9
Q ss_pred hccCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEE-ecccCC-----Ccce
Q 025035 159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV-MNISVQ-----ILTY 229 (259)
Q Consensus 159 l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~-~D~~~~-----~~~f 229 (259)
+....++++||+||++.|.-++.|+.. + ..+++.||+++++++.|+++.++.|+.+ |..+. +|..+. ..+|
T Consensus 54 L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~f 133 (219)
T COG4122 54 LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSF 133 (219)
T ss_pred HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCc
Confidence 344467899999999999999999987 3 4489999999999999999999999876 88888 466552 2367
Q ss_pred eEEEec
Q 025035 230 FICKSE 235 (259)
Q Consensus 230 dvv~~~ 235 (259)
|+|+..
T Consensus 134 DliFID 139 (219)
T COG4122 134 DLVFID 139 (219)
T ss_pred cEEEEe
Confidence 766543
No 177
>PRK03612 spermidine synthase; Provisional
Probab=98.07 E-value=9.2e-06 Score=79.08 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHh--Hhc---CC--cceEEEEecccCC----CcceeE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NRD---GF--SCIKFLVMNISVQ----ILTYFI 231 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~--~~~---~l--~~i~~i~~D~~~~----~~~fdv 231 (259)
++++|||||||+|..+..+++++. .+|+++|+++.+++.++++. ... .+ ++++++++|..+. +..||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 468999999999999999998854 69999999999999999842 211 11 4699999998872 337887
Q ss_pred EEeccc
Q 025035 232 CKSERN 237 (259)
Q Consensus 232 v~~~v~ 237 (259)
|..+..
T Consensus 377 Ii~D~~ 382 (521)
T PRK03612 377 IIVDLP 382 (521)
T ss_pred EEEeCC
Confidence 776643
No 178
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.2e-05 Score=69.03 Aligned_cols=75 Identities=20% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSERN 237 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~v~ 237 (259)
.++.+|||.|.|+|.++..|++. | ..+|+.+|+-+..++.|++|++..++.+ +++..+|+.+..+ .||.+..++.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp 172 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLP 172 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCC
Confidence 67899999999999999999975 3 3599999999999999999999988876 9999999998543 6776665553
No 179
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.04 E-value=1.5e-05 Score=72.11 Aligned_cols=61 Identities=20% Similarity=0.118 Sum_probs=52.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++..+||.+||.|..+..+++.. ..+|+|+|.++.|++.+++++.. ..+++++++|+.+.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l 80 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNL 80 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHH
Confidence 356799999999999999999983 35899999999999999998765 34799999999874
No 180
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.01 E-value=1.1e-05 Score=71.23 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=58.0
Q ss_pred HHhhccCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV 224 (259)
Q Consensus 156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~ 224 (259)
...+....+.++||+||+++|.-++.+++. + ..+|+.+|+++...+.|+++.++.|+. +|+++.+++.+
T Consensus 71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 333344457889999999999999999875 2 348999999999999999999999975 59999999877
No 181
>PRK01581 speE spermidine synthase; Validated
Probab=98.00 E-value=1.2e-05 Score=74.41 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=57.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHh-----Hhc--CCcceEEEEecccCC----Cccee
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA-----NRD--GFSCIKFLVMNISVQ----ILTYF 230 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~-----~~~--~l~~i~~i~~D~~~~----~~~fd 230 (259)
..+.+||+||||.|..+..+++.+ ..+|++||+++.+++.|++.. .+. .-++++++.+|+.+. ...||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456899999999999999999874 469999999999999999721 111 124799999999873 23688
Q ss_pred EEEecc
Q 025035 231 ICKSER 236 (259)
Q Consensus 231 vv~~~v 236 (259)
+|+.+.
T Consensus 229 VIIvDl 234 (374)
T PRK01581 229 VIIIDF 234 (374)
T ss_pred EEEEcC
Confidence 777664
No 182
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.99 E-value=5.2e-06 Score=72.28 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=49.7
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC---cceeEEEecccCcc
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI---LTYFICKSERNEHY 240 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~---~~fdvv~~~v~~h~ 240 (259)
+.++|+|||+|..++-++.. +.+|+|+|+|+.||+.|++.....-. ...++...++..+. .+.|+|...-..|.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 38999999999888888888 66999999999999999885432111 12344434443332 25665554444443
No 183
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.99 E-value=4.6e-05 Score=67.31 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC------cceeEE
Q 025035 162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI------LTYFIC 232 (259)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~------~~fdvv 232 (259)
+.+|.+|||.|.|+|.++..|++. +..+|+.+|+.+..++.|+++++..|+. ++++.+.|+.+.- ..+|.+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 367999999999999999999986 3449999999999999999999999986 5999999996521 257766
Q ss_pred EecccC
Q 025035 233 KSERNE 238 (259)
Q Consensus 233 ~~~v~~ 238 (259)
+.++-.
T Consensus 118 fLDlp~ 123 (247)
T PF08704_consen 118 FLDLPD 123 (247)
T ss_dssp EEESSS
T ss_pred EEeCCC
Confidence 665543
No 184
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.99 E-value=9.2e-05 Score=62.62 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=60.2
Q ss_pred EEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC--CCcceeEEEecccC
Q 025035 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV--QILTYFICKSERNE 238 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~--~~~~fdvv~~~v~~ 238 (259)
+++|||+|.|.-++.++-. +..+++.+|.+..-+...+......|+.|++++++.+++ ....||++.+--+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc
Confidence 8999999999999998876 445899999999999999999999999899999999999 55589977665544
No 185
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.93 E-value=2.4e-05 Score=71.74 Aligned_cols=67 Identities=22% Similarity=0.149 Sum_probs=59.5
Q ss_pred ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe-cccCCCc
Q 025035 160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM-NISVQIL 227 (259)
Q Consensus 160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~-D~~~~~~ 227 (259)
....+|..|||--||||.+++...-.|. +++|+|++..|++-|+.|++..++....++.. |+.++++
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 3446788999999999999999999887 99999999999999999999999877766666 9999876
No 186
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.2e-05 Score=64.12 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=51.6
Q ss_pred CCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+.-+||||||+|..+-+|++. +.....++|+++.+++..++.++.++. ++..++.|+..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~ 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLS 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHh
Confidence 567999999999999999987 445788999999999999999988876 68888888876
No 187
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.86 E-value=3.4e-05 Score=62.19 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=51.8
Q ss_pred CCCCEEEEEccCcChhHHHHHh-----cCCCcEEEEeCCHHHHHHHHHHhHhcC--C-cceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~-----~g~~~V~giD~S~~~i~~a~~~~~~~~--l-~~i~~i~~D~~~~ 225 (259)
.+..+|+|+|||.|.+++.|+. ....+|+|||.++..++.+.++.++.+ . .++++..+++.+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 3567999999999999999999 534499999999999999999988776 3 3577777776543
No 188
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.82 E-value=2.4e-05 Score=66.29 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICK 233 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~ 233 (259)
.+++|||+|+|+|..++..++.|...|+..|+.+..+...+-|++.+|+ .|.+...|+.-.+..+|+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIGSPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccCCCcceeEEE
Confidence 4899999999999999999999999999999999888888889988886 79999999888666777543
No 189
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.82 E-value=3.4e-05 Score=72.13 Aligned_cols=70 Identities=9% Similarity=0.160 Sum_probs=60.1
Q ss_pred CEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEec
Q 025035 166 WSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSE 235 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~ 235 (259)
.+|||+.||+|..++.++.+ |..+|+++|+++.+++.+++|++.+++.+++++++|+.... ..||+|..+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 58999999999999999998 66799999999999999999999988877899999988642 256765443
No 190
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.79 E-value=7.5e-05 Score=65.17 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~ 240 (259)
+..+|||||+|.|.++..++++ +..+++.+|. +.+++.+++ ..+|+++.+|+.+....+|+++..-++|.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~P~~D~~~l~~vLh~ 170 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPLPVADVYLLRHVLHD 170 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCCSSESEEEEESSGGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhhhccccceeeehhhhh
Confidence 4578999999999999999988 4459999999 778888888 24799999999864445886665555554
No 191
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.71 E-value=4.5e-05 Score=64.29 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=64.0
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSERNE 238 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~v~~ 238 (259)
...+.|+|+|+|.++...+.. ..+|++|+..+.-.+.|.+|++-.|..|++.+.+|+....+ ..|++.++++.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhh
Confidence 368999999999999988887 56999999999999999999887888789999999999877 77877777654
No 192
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00014 Score=67.67 Aligned_cols=72 Identities=22% Similarity=0.170 Sum_probs=58.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCC---------------------------------C-------cEEEEeCCHHHHHH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGF---------------------------------S-------DLTGVDYSEDAINL 202 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------~-------~V~giD~S~~~i~~ 202 (259)
.++..++|.-||+|++++..|..+. . .++|+|+++.+|+.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 3456899999999999999887742 1 27799999999999
Q ss_pred HHHHhHhcCCcc-eEEEEecccCCCc---ceeEEEe
Q 025035 203 AQSLANRDGFSC-IKFLVMNISVQIL---TYFICKS 234 (259)
Q Consensus 203 a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv~~ 234 (259)
|+.|+...|+.. |+|.++|+..+.. .++++.+
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~ 305 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS 305 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence 999999999975 9999999998543 4555444
No 193
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.00031 Score=60.74 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=60.9
Q ss_pred CCEEEEEccCcChhHHHHHh-cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--c-eeEEEecc
Q 025035 165 SWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--T-YFICKSER 236 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~-~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~-fdvv~~~v 236 (259)
+.+++|||+|.|.-++.++- .+..+|+-+|....-+...+...+..+++|++++++.+++... . ||++.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence 57999999999999999883 3444799999999999999999999999889999999998654 3 88665543
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.67 E-value=0.00012 Score=71.20 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=53.1
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+..+||||||.|.++..+|+. +...++|+|++...+..+.+.+...++.|+.+++.|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~ 408 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL 408 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 3568999999999999999998 445899999999999999888888888899998887754
No 195
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.65 E-value=0.00014 Score=64.72 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=53.0
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL 227 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~ 227 (259)
++..|||||+|.|.++..|++.+ .+|+++|+++.+++..+++... .++++++.+|+.+...
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDL 90 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCG
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--cccceeeecchhcccc
Confidence 57899999999999999999997 5999999999999999987762 2479999999998655
No 196
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.65 E-value=0.00016 Score=72.85 Aligned_cols=72 Identities=28% Similarity=0.264 Sum_probs=58.0
Q ss_pred CCCEEEEEccCcChhHHHHHhc-------------C------------------------------CCcEEEEeCCHHHH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-------------G------------------------------FSDLTGVDYSEDAI 200 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-------------g------------------------------~~~V~giD~S~~~i 200 (259)
++..++|.+||+|.+++..+.. + ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4678999999999999887652 0 11599999999999
Q ss_pred HHHHHHhHhcCCcc-eEEEEecccCCCc-----ceeEEEec
Q 025035 201 NLAQSLANRDGFSC-IKFLVMNISVQIL-----TYFICKSE 235 (259)
Q Consensus 201 ~~a~~~~~~~~l~~-i~~i~~D~~~~~~-----~fdvv~~~ 235 (259)
+.|++|+...|+.+ |+|.++|+.+.+. .+|+|..+
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 99999999999864 9999999988643 26655444
No 197
>PLN02823 spermine synthase
Probab=97.61 E-value=0.00017 Score=66.52 Aligned_cols=74 Identities=8% Similarity=0.186 Sum_probs=59.7
Q ss_pred CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEe
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKS 234 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~ 234 (259)
.+++||.||+|.|..+..+++. +..+|+.||+++.+++.|++.....+ -++++++.+|..+. ...||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4679999999999999998886 45689999999999999999875431 24699999998873 237888777
Q ss_pred ccc
Q 025035 235 ERN 237 (259)
Q Consensus 235 ~v~ 237 (259)
+..
T Consensus 183 D~~ 185 (336)
T PLN02823 183 DLA 185 (336)
T ss_pred cCC
Confidence 653
No 198
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.61 E-value=9e-05 Score=64.79 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=42.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR 209 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~ 209 (259)
..+..+|||||-+|.+++.+++. |...|+|+||.+..|..|++++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 45789999999999999999997 777999999999999999998754
No 199
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.60 E-value=0.0003 Score=60.52 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=49.4
Q ss_pred EEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC
Q 025035 168 VLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV 224 (259)
Q Consensus 168 VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~ 224 (259)
|.||||--|.++..|.++|.. +++++|+++..++.|+++.++.|+.+ |++..+|-.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence 689999999999999999765 89999999999999999999998754 9999999766
No 200
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00027 Score=67.22 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=61.2
Q ss_pred EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCccccc
Q 025035 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHYTFD 243 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~~D 243 (259)
++|-+|||+-.+...+.+.|+..|+.+|+|+..++.+...-.+ .-..+.+..+|+.++.+ +|+++ ++....|
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiV----IdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIV----IDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEE----EecCccc
Confidence 8999999999999999999999999999999999988876542 22358999999999766 78875 4555555
Q ss_pred eeee
Q 025035 244 LYQI 247 (259)
Q Consensus 244 ~i~~ 247 (259)
....
T Consensus 126 al~~ 129 (482)
T KOG2352|consen 126 ALFE 129 (482)
T ss_pred cccC
Confidence 5544
No 201
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.57 E-value=0.00045 Score=62.05 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=54.5
Q ss_pred CCCEEEEEccCcChhHHHHHhc-C--CCcEEEEeCCHHHHHHHHHHhHhcCCcce-EEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i-~~i~~D~~~~ 225 (259)
.+-+||||.||.|++.+-.... + ..+|...|+|+..++..++.++..|+.++ +|.++|+.+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 4679999999999998877765 3 35899999999999999999999999885 9999999883
No 202
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=8.2e-05 Score=64.63 Aligned_cols=79 Identities=23% Similarity=0.225 Sum_probs=63.9
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY 240 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~ 240 (259)
....++|||||-|.+...+..++..+++-+|.|-.|++.++..- ..++ .....++|-+.+++ ++|++++.+..|.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce-EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 35689999999999999999999889999999999999998742 2333 45666778777766 7888888888887
Q ss_pred ccce
Q 025035 241 TFDL 244 (259)
Q Consensus 241 ~~D~ 244 (259)
..|+
T Consensus 150 ~NdL 153 (325)
T KOG2940|consen 150 TNDL 153 (325)
T ss_pred hccC
Confidence 7664
No 203
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.48 E-value=0.00048 Score=66.26 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=59.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEE
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICK 233 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~ 233 (259)
.++.+|||+|||.|.-+..++.. +...|+++|+++.-++.+++++++.|+.++...+.|...+. ..||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 56889999999999999999886 23489999999999999999999999988999999987642 2566544
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.47 E-value=0.00047 Score=59.27 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhH-------hcCC--cceEEEEecccCCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVMNISVQI 226 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~-------~~~l--~~i~~i~~D~~~~~ 226 (259)
.++...+|||||.|......+-. ++.+++|||+.+...+.|+...+ ..|. .++++.++|+.+.+
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 35779999999999998877765 77679999999998887766432 2333 35888999988743
No 205
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.42 E-value=0.0014 Score=59.43 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=51.2
Q ss_pred CCCEEEEEccCcChhHHHHHhc--------CCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCC-----cc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQI-----LT 228 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~--------g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~-----~~ 228 (259)
++.+|||.+||+|.++..+.+. ...+++|+|+++.++..|+-++...+.. ++.+.++|....+ ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 4568999999999999888762 3448999999999999999887666542 3568888876532 26
Q ss_pred eeEEEec
Q 025035 229 YFICKSE 235 (259)
Q Consensus 229 fdvv~~~ 235 (259)
||+|+++
T Consensus 126 ~D~ii~N 132 (311)
T PF02384_consen 126 FDVIIGN 132 (311)
T ss_dssp EEEEEEE
T ss_pred cccccCC
Confidence 8876554
No 206
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.31 E-value=0.0027 Score=57.55 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCEEEEEccCcChhHHHHH-hc-CCCcEEEEeCCHHHHHHHHHHhHhc-CCc-ceEEEEec
Q 025035 165 SWSVLDIGTGNGLLLQELS-KQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLVMN 221 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la-~~-g~~~V~giD~S~~~i~~a~~~~~~~-~l~-~i~~i~~D 221 (259)
.-++||||||...+--.|. +. |. +++|.|+++..++.|+++.+++ ++. +|+++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 4589999999887633333 33 66 9999999999999999999998 775 48887654
No 207
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.27 E-value=0.00061 Score=62.70 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=50.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEecccCc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSERNEH 239 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~v~~h 239 (259)
.++.++|||||++|.++..++++|. +|++||..+ |- ..+... ++|+.+..|..... ..+|++.++++++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmve~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMVEK 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCC--CCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence 5688999999999999999999987 999999665 21 112112 35777777765532 2677777777764
Q ss_pred c
Q 025035 240 Y 240 (259)
Q Consensus 240 ~ 240 (259)
+
T Consensus 282 P 282 (357)
T PRK11760 282 P 282 (357)
T ss_pred H
Confidence 4
No 208
>PRK10742 putative methyltransferase; Provisional
Probab=97.24 E-value=0.0018 Score=57.16 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=57.5
Q ss_pred EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc------C--C-cceEEEEecccCC----CcceeEEE
Q 025035 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------G--F-SCIKFLVMNISVQ----ILTYFICK 233 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~------~--l-~~i~~i~~D~~~~----~~~fdvv~ 233 (259)
+|||+-+|.|..++.++.+|+ +|+++|.++.+....++++++. + + .+++++++|..+. ...||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 899999999999999999998 5999999999999999988774 2 2 3688899988773 22688776
Q ss_pred eccc
Q 025035 234 SERN 237 (259)
Q Consensus 234 ~~v~ 237 (259)
.+-.
T Consensus 170 lDPM 173 (250)
T PRK10742 170 LDPM 173 (250)
T ss_pred ECCC
Confidence 5443
No 209
>PHA01634 hypothetical protein
Probab=97.22 E-value=0.0016 Score=51.74 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=45.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l 212 (259)
..+++|+|||.+-|.-+++++-+|..+|++++.++...+..+++++.+++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 46899999999999999999999999999999999999999998887654
No 210
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.13 E-value=0.0016 Score=57.50 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccC----CCc-ceeEEE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISV----QIL-TYFICK 233 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~----~~~-~fdvv~ 233 (259)
.+++||-||.|.|..+..+.+.. ..+|++||+++.+++.|++...... -++++++.+|... ... .||+|.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 47899999999999999999884 4699999999999999999775432 1379999999866 333 688877
Q ss_pred ecccC
Q 025035 234 SERNE 238 (259)
Q Consensus 234 ~~v~~ 238 (259)
.+...
T Consensus 156 ~D~~d 160 (246)
T PF01564_consen 156 VDLTD 160 (246)
T ss_dssp EESSS
T ss_pred EeCCC
Confidence 66554
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0016 Score=58.59 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=60.2
Q ss_pred CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEec
Q 025035 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKSE 235 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~~ 235 (259)
.++||-||.|.|..++.+.+.. ..+++.||+.+..++.+++.+.... -++++.+.+|..+. +..||+|+.+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999984 5699999999999999999875432 24689999998773 2268877766
Q ss_pred ccCc
Q 025035 236 RNEH 239 (259)
Q Consensus 236 v~~h 239 (259)
....
T Consensus 157 ~tdp 160 (282)
T COG0421 157 STDP 160 (282)
T ss_pred CCCC
Confidence 6544
No 212
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.09 E-value=0.00094 Score=59.88 Aligned_cols=48 Identities=31% Similarity=0.439 Sum_probs=39.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD 210 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~ 210 (259)
..+.+|||+|||+|..+..+... ...+++++|.|+.|++.++..++..
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 45789999999999877766654 3458999999999999999987643
No 213
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.09 E-value=0.001 Score=64.79 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCEEEEEccCcChhHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEec
Q 025035 165 SWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMN 221 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g---------~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D 221 (259)
+.+|||.|||+|.++..++.+. ..+++|+|+++.++..++.++...+...+..++.|
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d 97 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFN 97 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecc
Confidence 5689999999999999888752 13789999999999999998876652234444444
No 214
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.93 E-value=0.0015 Score=53.71 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=39.6
Q ss_pred EEEeCCHHHHHHHHHHhHhcC---CcceEEEEecccCCCc---ceeEEEecccCcccc
Q 025035 191 TGVDYSEDAINLAQSLANRDG---FSCIKFLVMNISVQIL---TYFICKSERNEHYTF 242 (259)
Q Consensus 191 ~giD~S~~~i~~a~~~~~~~~---l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~~ 242 (259)
+|+|+|+.|++.|+++.+..+ ..+++|+++|+.++++ .||++.+....|...
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~ 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC
Confidence 589999999999988765322 2469999999999776 689777766555433
No 215
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.92 E-value=0.0024 Score=53.07 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=53.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--------cceeEEE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--------LTYFICK 233 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--------~~fdvv~ 233 (259)
.+..||++|.|+|-++..+.++|. ..++++++|++......++.. .++++.+|+..+. ..||.+.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHhhcCCCeeeeEE
Confidence 567999999999999999999964 489999999999888877543 4668888887754 1566555
Q ss_pred ecc
Q 025035 234 SER 236 (259)
Q Consensus 234 ~~v 236 (259)
+.+
T Consensus 123 S~l 125 (194)
T COG3963 123 SGL 125 (194)
T ss_pred ecc
Confidence 544
No 216
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.90 E-value=0.0091 Score=54.76 Aligned_cols=62 Identities=18% Similarity=0.099 Sum_probs=46.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhc----C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~----g-~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~ 224 (259)
.++..|+|+|||+|.-+..|.+. + ....+++|+|..+++.+.+++....++. +.-+++|..+
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 34668999999999976655543 1 2379999999999999999887444444 4558888866
No 217
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0031 Score=54.17 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=50.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCC--cEEEEeCCHHHHHHHHHHhHhcC----------CcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFS--DLTGVDYSEDAINLAQSLANRDG----------FSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~--~V~giD~S~~~i~~a~~~~~~~~----------l~~i~~i~~D~~~~ 225 (259)
.++.+.||+|+|+|+++..++.. |.. .++|||.-++.++.+++++.+.- ..++.++++|....
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 57899999999999999888865 322 45999999999999999886542 12578888888774
No 218
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.89 E-value=0.0049 Score=54.36 Aligned_cols=74 Identities=15% Similarity=0.049 Sum_probs=53.5
Q ss_pred hccCCCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEE
Q 025035 159 NDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICK 233 (259)
Q Consensus 159 l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~ 233 (259)
+.....+.+|+|||||-=-+++.+.... ...++|+|++..+++.........+. +.+....|+...+. ..|+.+
T Consensus 100 f~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaL 176 (251)
T PF07091_consen 100 FGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLAL 176 (251)
T ss_dssp CCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEE
T ss_pred HhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhh
Confidence 3344557899999999988888777662 34999999999999999999888886 78888888887533 556544
No 219
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.82 E-value=0.0022 Score=55.45 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=52.6
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEeccc-Cc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSERN-EH 239 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~v~-~h 239 (259)
...++||+|+|-|+.+..+.-.-+.+|-.+|+++..++.|++.+...+..-.++.+.-+.+.. ..||+|+.... -|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 357999999999999987766557799999999999999998765422223677887777632 38998777664 34
Q ss_pred ccc
Q 025035 240 YTF 242 (259)
Q Consensus 240 ~~~ 242 (259)
.+.
T Consensus 135 LTD 137 (218)
T PF05891_consen 135 LTD 137 (218)
T ss_dssp S-H
T ss_pred CCH
Confidence 443
No 220
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.81 E-value=0.0026 Score=55.30 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=55.3
Q ss_pred cCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC
Q 025035 161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV 224 (259)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~ 224 (259)
+...++++||||.=+|.-++.+|.. .-.+|+++|+++...+.+.+..+..|+.+ |+++++.+.+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 3357889999999999999988887 22389999999999999999999899865 9999998877
No 221
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.78 E-value=0.004 Score=56.11 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=60.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----c-ceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----L-TYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~-~fdvv~~~ 235 (259)
.++.+|||+++|.|.-+..++.. +...|++.|+++.-+...++++++.|+.++..++.|..+.. . .||.|+.+
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 56789999999999999888887 24589999999999999999999999988888888888752 1 47765543
No 222
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.77 E-value=0.004 Score=55.16 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=45.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEe
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKS 234 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~ 234 (259)
...++||||.|.|..+..++.. +.+|++.|.|+.|....++ .|.. + .-..|+.+....||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~~-v-l~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGFT-V-LDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCCe-E-EehhhhhccCCceEEEee
Confidence 4578999999999999999987 6799999999999655554 4442 1 112334444557885443
No 223
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.74 E-value=0.0026 Score=60.02 Aligned_cols=59 Identities=29% Similarity=0.434 Sum_probs=50.8
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV 224 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~ 224 (259)
-.|||||+|+|.++...++.|...|++++.-..|.+.|++...++|.+ +|+.|.-.-++
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 368999999999999999988889999999999999999999999886 48777644433
No 224
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.70 E-value=0.0017 Score=55.64 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=56.1
Q ss_pred EEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC-----------CcceeEEE
Q 025035 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ-----------ILTYFICK 233 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~-----------~~~fdvv~ 233 (259)
+|||||||+|..+.+++++ +.-.-.-.|+.+..+...+......+++| ..-+..|+... ...||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999998 33366688999888777777777777655 34455666553 12678766
Q ss_pred ecccCcccccee
Q 025035 234 SERNEHYTFDLY 245 (259)
Q Consensus 234 ~~v~~h~~~D~i 245 (259)
+.-+.|+..--.
T Consensus 108 ~~N~lHI~p~~~ 119 (204)
T PF06080_consen 108 CINMLHISPWSA 119 (204)
T ss_pred ehhHHHhcCHHH
Confidence 666667655333
No 225
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.67 E-value=0.01 Score=44.73 Aligned_cols=66 Identities=32% Similarity=0.468 Sum_probs=43.4
Q ss_pred EEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC--CCc----ceeEEEe
Q 025035 168 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV--QIL----TYFICKS 234 (259)
Q Consensus 168 VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~--~~~----~fdvv~~ 234 (259)
+||+|||+|... .+..... ..++|+|+++.++..++......+...+.++..+... .++ .||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999976 3333322 2799999999999996655433221116788888765 332 3666533
No 226
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.57 E-value=0.0091 Score=54.37 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=52.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++.++|.-||.|..+..+++. +..+|+|+|.++.+++.++++++..+ .++++++++..++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l 81 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANF 81 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHH
Confidence 35679999999999999999987 34699999999999999999886553 3799999988874
No 227
>PRK00536 speE spermidine synthase; Provisional
Probab=96.57 E-value=0.0093 Score=53.17 Aligned_cols=72 Identities=14% Similarity=-0.081 Sum_probs=52.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccCC-CcceeEEEecc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISVQ-ILTYFICKSER 236 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~~-~~~fdvv~~~v 236 (259)
..+++||-||.|.|..++.+++... +|+.||+.+.+++.+++.+... ++ ++++++.. +.+. ...||+|..+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 3568999999999999999999964 9999999999999999955432 12 34665542 2221 23677666553
No 228
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.021 Score=51.01 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=61.6
Q ss_pred CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-----ceeEEE
Q 025035 162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-----TYFICK 233 (259)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-----~fdvv~ 233 (259)
..++.+||+-|+|+|.++.++++. +-.+++.+|+-+.-.+.|++..+..+++ ++++++.|+-..-+ .+|.|+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 367899999999999999999997 3349999999999999999999999886 59999999887433 455555
Q ss_pred ecc
Q 025035 234 SER 236 (259)
Q Consensus 234 ~~v 236 (259)
.++
T Consensus 183 LDl 185 (314)
T KOG2915|consen 183 LDL 185 (314)
T ss_pred EcC
Confidence 444
No 229
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.021 Score=53.12 Aligned_cols=68 Identities=15% Similarity=0.008 Sum_probs=56.4
Q ss_pred hhccCCCCCEEEEEccCcChhHHHHHhcCC---CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~---~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+....++.+|||++++.|.=+..+++... ..|+++|.++.-++..++++++.|+.++..++.|....
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 333446789999999999999888888732 24799999999999999999999998888888887653
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.017 Score=49.56 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-----------ce
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-----------TY 229 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-----------~f 229 (259)
.++..|+|||+-.|.+++.+++. +. ..|+|+|+-+- ..+.++.++++|++.... .+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence 46799999999999999999988 32 25999999882 123469999999998432 35
Q ss_pred eEEEecccC
Q 025035 230 FICKSERNE 238 (259)
Q Consensus 230 dvv~~~v~~ 238 (259)
|+|.+++.-
T Consensus 113 DvV~sD~ap 121 (205)
T COG0293 113 DVVLSDMAP 121 (205)
T ss_pred ceEEecCCC
Confidence 777766654
No 231
>PRK11524 putative methyltransferase; Provisional
Probab=96.17 E-value=0.012 Score=52.86 Aligned_cols=55 Identities=13% Similarity=-0.051 Sum_probs=45.4
Q ss_pred chHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh
Q 025035 154 EPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (259)
Q Consensus 154 ~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~ 209 (259)
.+.+++... .++..|||.-||+|..++...+.|. +.+|+|++++.++.|++++..
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 334444333 4789999999999999998888876 999999999999999998753
No 232
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.10 E-value=0.0017 Score=56.65 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCCc-----ceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQIL-----TYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~~-----~fdvv~~~ 235 (259)
.++.+|||.+.|-|+.++..+++|..+|+.++.++..|++|+-|-=..++. .|+.+.+|+.+.-. +||+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa---- 208 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA---- 208 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce----
Confidence 458899999999999999999999889999999999999998764222332 58999999988433 4664
Q ss_pred ccCccccceeeee
Q 025035 236 RNEHYTFDLYQIG 248 (259)
Q Consensus 236 v~~h~~~D~i~~~ 248 (259)
+.|-+.-+-..|
T Consensus 209 -IiHDPPRfS~Ag 220 (287)
T COG2521 209 -IIHDPPRFSLAG 220 (287)
T ss_pred -EeeCCCccchhh
Confidence 345555444433
No 233
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.0069 Score=49.41 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=60.0
Q ss_pred hccccchHHhhccC--CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035 149 EDLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ 225 (259)
Q Consensus 149 ~~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~ 225 (259)
....+.+...+... .+.++.+|+|+|.|++.+..++.|....+|++.++-.+.+++-++-+.|.. ...|...|+-+.
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 34444444444433 344799999999999999999998668999999999999999988887764 477777777664
Q ss_pred Cc
Q 025035 226 IL 227 (259)
Q Consensus 226 ~~ 227 (259)
..
T Consensus 135 dl 136 (199)
T KOG4058|consen 135 DL 136 (199)
T ss_pred cc
Confidence 43
No 234
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.03 E-value=0.0098 Score=50.38 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~ 205 (259)
.++..|||.-||+|..+....+.|. +.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4688999999999999999988876 89999999999999875
No 235
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.00 E-value=0.0057 Score=47.08 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=28.7
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 197 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~ 197 (259)
+....+|||||+|.+..-|.+.|+ .-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 356799999999999999999998 899999644
No 236
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.88 E-value=0.0066 Score=50.51 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=30.2
Q ss_pred CCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSED 198 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~ 198 (259)
.+.+|||+||++|.++..+.+++ ..+|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 35899999999999999999997 459999999885
No 237
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.82 E-value=0.033 Score=48.19 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=53.0
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~ 224 (259)
.+.++.||||=.|++..+|.+.+ .+.+++.|++++.++.|.++.++.++. +|+..++|...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~ 78 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA 78 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence 35669999999999999999985 459999999999999999999998875 48888888755
No 238
>PRK13699 putative methylase; Provisional
Probab=95.76 E-value=0.028 Score=49.06 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=45.4
Q ss_pred chHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035 154 EPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210 (259)
Q Consensus 154 ~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~ 210 (259)
.+..++... .++..|||.-||+|..++...+.|. +.+|+|+++...+.+.++++..
T Consensus 152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 333444332 4688999999999999999888876 9999999999999999987653
No 239
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.70 E-value=0.016 Score=54.12 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=66.4
Q ss_pred chHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ce
Q 025035 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TY 229 (259)
Q Consensus 154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~f 229 (259)
.+..+.....++..++|+|||-|.....++..+...++|+++++..+..+.......++.+ ..++.+|+.+.++ .|
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~f 179 (364)
T KOG1269|consen 100 GIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTF 179 (364)
T ss_pred chHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCcccc
Confidence 3344444455677899999999999999999877799999999999999988877777654 5668888888765 66
Q ss_pred eEE-EecccCcccc
Q 025035 230 FIC-KSERNEHYTF 242 (259)
Q Consensus 230 dvv-~~~v~~h~~~ 242 (259)
|.+ +.+...|.+.
T Consensus 180 d~v~~ld~~~~~~~ 193 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPD 193 (364)
T ss_pred CcEEEEeecccCCc
Confidence 643 3344445443
No 240
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.43 E-value=0.021 Score=49.02 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=46.7
Q ss_pred CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC-------CcceEEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVMNISV 224 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~-------l~~i~~i~~D~~~ 224 (259)
.-.+.|||||-|.+++.|+.. +-.-+.|++|--...++.++++.... +.||..+..+...
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 356899999999999999988 44478899999888888888876554 4456666665544
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.39 E-value=0.051 Score=50.53 Aligned_cols=73 Identities=25% Similarity=0.278 Sum_probs=56.3
Q ss_pred CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHh--HhcC---C--cceEEEEecccCCCc----ceeE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA--NRDG---F--SCIKFLVMNISVQIL----TYFI 231 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~--~~~~---l--~~i~~i~~D~~~~~~----~fdv 231 (259)
...+||-+|.|.|..++.+.+.+ ..+|+-+|..+.||+.++++. ...+ + ++++.+..|+.+... .||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 35789999999999999999995 779999999999999999543 2221 2 368999999988432 6665
Q ss_pred EEecc
Q 025035 232 CKSER 236 (259)
Q Consensus 232 v~~~v 236 (259)
++-+.
T Consensus 369 vIVDl 373 (508)
T COG4262 369 VIVDL 373 (508)
T ss_pred EEEeC
Confidence 54443
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=0.02 Score=50.16 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=36.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLA 203 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a 203 (259)
.++..+||||+.||.++..+.++|..+|+++|..-..+..-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k 118 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK 118 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh
Confidence 57899999999999999999999999999999988666543
No 243
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.35 E-value=0.037 Score=49.53 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=43.8
Q ss_pred EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+|+|+.||.|.+...+.+.|+..|.++|+++.+++..+.+... . .+++|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~ 54 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKI 54 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccC
Confidence 6999999999999999998987889999999999988887632 1 456676664
No 244
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.30 E-value=0.053 Score=48.69 Aligned_cols=70 Identities=26% Similarity=0.272 Sum_probs=42.2
Q ss_pred CCEEEEEccCcC-hhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhH-hcCCc-ceEEEEecccCCCc---ceeEEEe
Q 025035 165 SWSVLDIGTGNG-LLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFLVMNISVQIL---TYFICKS 234 (259)
Q Consensus 165 ~~~VLDiGcG~G-~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~-~~~l~-~i~~i~~D~~~~~~---~fdvv~~ 234 (259)
+.+|+=||||.= ..++.++++ + ...|+++|+++.+++.+++..+ ..++. +++|+++|..+... .||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 469999999954 445566654 3 2379999999999999999877 44544 59999999987542 6775443
No 245
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.86 E-value=0.011 Score=52.88 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=49.7
Q ss_pred HHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcce-EEEEecccCCCc---ceeE
Q 025035 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVMNISVQIL---TYFI 231 (259)
Q Consensus 156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i-~~i~~D~~~~~~---~fdv 231 (259)
..++.....+..+||+|||+|..+.. .+...++|+|++...+.-+++. +. ....+|+.+++. .||.
T Consensus 37 ~qfl~~~~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 37 RQFLDSQPTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDA 106 (293)
T ss_pred HHHHhccCCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCcccc
Confidence 34444445678999999999987653 2334799999999998888762 33 577788888776 6774
Q ss_pred EEec
Q 025035 232 CKSE 235 (259)
Q Consensus 232 v~~~ 235 (259)
+++-
T Consensus 107 ~lsi 110 (293)
T KOG1331|consen 107 ALSI 110 (293)
T ss_pred chhh
Confidence 4443
No 246
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.75 E-value=0.02 Score=51.75 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=52.4
Q ss_pred CCCCEEEEEccCcChhHH-HHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~-~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~ 225 (259)
..+..|.|+-.|-|++++ ++...|.+.|+++|.++.+++..+++++.+++. +...+.+|-...
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~ 257 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP 257 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence 456789999999999999 788889999999999999999999999988764 355556666553
No 247
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.61 E-value=0.38 Score=41.93 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=53.8
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~~ 234 (259)
.++.+||-+|..+|.....++.- | ...|+++++|+...+..-..+++. +||--+..|+..+.. ..|+++.
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEe
Confidence 46889999999999999999987 4 348999999997766555555544 378889999988533 6677777
Q ss_pred cccCc
Q 025035 235 ERNEH 239 (259)
Q Consensus 235 ~v~~h 239 (259)
++...
T Consensus 150 DVaQp 154 (229)
T PF01269_consen 150 DVAQP 154 (229)
T ss_dssp E-SST
T ss_pred cCCCh
Confidence 66543
No 248
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.61 E-value=0.12 Score=45.56 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=53.9
Q ss_pred CCEEEEEccCcChhHHHHHhc-C--------CCcEEEEeCCHHHHHHHHHHhHhc-----CC-cceEEEEecccCCCcce
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-G--------FSDLTGVDYSEDAINLAQSLANRD-----GF-SCIKFLVMNISVQILTY 229 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g--------~~~V~giD~S~~~i~~a~~~~~~~-----~l-~~i~~i~~D~~~~~~~f 229 (259)
+-+|+|+|.|+|.++.-+++. . ..+++.||+|+.+.+.-++++... .. .+|.| ..++.+.+..-
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p~~~ 97 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVPFPG 97 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS-CCE
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhcccCCE
Confidence 368999999999999888875 1 237999999999988888877542 12 25777 44555554444
Q ss_pred eEEEecccCccccceeee
Q 025035 230 FICKSERNEHYTFDLYQI 247 (259)
Q Consensus 230 dvv~~~v~~h~~~D~i~~ 247 (259)
.+++.+++.-.+.|.+..
T Consensus 98 ~iiaNE~~DAlP~~~~~~ 115 (252)
T PF02636_consen 98 FIIANELFDALPVDRFRK 115 (252)
T ss_dssp EEEEESSGGGS--EEEEE
T ss_pred EEEEeeehhcCceeEEEE
Confidence 566777777666666653
No 249
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.51 E-value=0.2 Score=44.00 Aligned_cols=72 Identities=21% Similarity=0.114 Sum_probs=44.5
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH---hHhcC-C-----cceEEEEecccCC----CcceeEE
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL---ANRDG-F-----SCIKFLVMNISVQ----ILTYFIC 232 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~---~~~~~-l-----~~i~~i~~D~~~~----~~~fdvv 232 (259)
.+|||.-+|-|..++-++..|+ +|+++|-|+.+..+.+.- +.... . .+|+++++|..+. ..+||||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999999998887 899999999776555543 32221 1 3699999998883 2388887
Q ss_pred EecccC
Q 025035 233 KSERNE 238 (259)
Q Consensus 233 ~~~v~~ 238 (259)
+.+-++
T Consensus 156 Y~DPMF 161 (234)
T PF04445_consen 156 YFDPMF 161 (234)
T ss_dssp EE--S-
T ss_pred EECCCC
Confidence 765544
No 250
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.42 E-value=0.062 Score=46.36 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=31.3
Q ss_pred hccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035 159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS 234 (259)
Q Consensus 159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~ 234 (259)
+....++..|-|+|||.+.++..+.+ +. +|+..|.-.. +-..+.+|+.+.|+ ..|++..
T Consensus 67 l~~~~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 67 LKKRPKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp HCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEE
T ss_pred HHhcCCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEE
Confidence 33344567999999999999976543 33 7999998651 22356788888766 5564433
No 251
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.38 E-value=0.084 Score=47.28 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=36.9
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~ 206 (259)
.+.+||--|||.|+++..++.+|+ .+.|.|+|-.|+=...-.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fi 97 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFI 97 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHH
Confidence 457999999999999999999999 999999999997555543
No 252
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.37 E-value=0.082 Score=47.40 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=45.9
Q ss_pred EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI 226 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~ 226 (259)
+++|+-||.|.+...|.+.|+.-|.++|+++.+++.-+.|.. ...++|+.+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~ 54 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEID 54 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccc
Confidence 699999999999999999998789999999999988888763 67888988864
No 253
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.24 E-value=0.07 Score=45.55 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=42.5
Q ss_pred CCCEEEEEccCcCh----hHHHHHhc---CC---CcEEEEeCCHHHHHHHHHHh--------------Hh-----cC---
Q 025035 164 SSWSVLDIGTGNGL----LLQELSKQ---GF---SDLTGVDYSEDAINLAQSLA--------------NR-----DG--- 211 (259)
Q Consensus 164 ~~~~VLDiGcG~G~----~~~~la~~---g~---~~V~giD~S~~~i~~a~~~~--------------~~-----~~--- 211 (259)
+.-+|+..||++|. +++.+.+. .. -+|+|+|+|+.+|+.|++-. ++ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 35699999999998 33444441 11 28999999999999998711 00 01
Q ss_pred -C-----cceEEEEecccC-CCc--ceeEEEe-cccC
Q 025035 212 -F-----SCIKFLVMNISV-QIL--TYFICKS-ERNE 238 (259)
Q Consensus 212 -l-----~~i~~i~~D~~~-~~~--~fdvv~~-~v~~ 238 (259)
+ ..|+|.+.|+.+ .+. .||+|++ +++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlI 147 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLI 147 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGG
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEE
Confidence 1 258999999988 222 7885544 4433
No 254
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.09 E-value=0.16 Score=45.34 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=39.7
Q ss_pred CEEEEEccCc--ChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGN--GLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~--G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
...||||||- -.....++++ +-++|+-+|+.+..+..++..+....-....++++|+.+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 5799999993 3345566665 4569999999999999999987655322489999999983
No 255
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.04 E-value=0.071 Score=46.15 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=33.4
Q ss_pred CCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLAN 208 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~ 208 (259)
.+-++.|-+||.|.++--+.-. ....|+|-|+++.+++.|++|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 3568999999999986554432 23489999999999999999865
No 256
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.84 E-value=0.14 Score=45.66 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=38.2
Q ss_pred hccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeE
Q 025035 159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFI 231 (259)
Q Consensus 159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdv 231 (259)
+.....+..|-|+|||.+.++. .. ..+|+.+|+-. .+-+++.+|+.+.|. +.||
T Consensus 175 ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 175 IKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccE
Confidence 3333567899999999999887 23 33899999765 145667888888765 4553
No 257
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=93.04 E-value=0.2 Score=46.13 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY 240 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~ 240 (259)
-...+|+|.|.|+.+..+... +.+|-++++....+-.++.... .| |+.+-+|..+....-|+++...+.|.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P~~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTPKGDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC---cceecccccccCCCcCeEEEEeeccc
Confidence 368999999999999999985 6689999999888777776654 33 67777777776555556665555543
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.96 E-value=0.59 Score=41.15 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-----ceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-----TYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-----~fdvv~~~ 235 (259)
..+++||-+|=.-- .++.++-. ...+|+.+|+.+..++..++.+++.|+ +|+.++.|+.+... .||+++.+
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE-
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEeC
Confidence 46899999985442 34444432 345999999999999999999999998 49999999999422 78866544
No 259
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.90 E-value=0.32 Score=45.70 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=52.5
Q ss_pred CCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCC----cceeEE
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQI----LTYFIC 232 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~----~~fdvv 232 (259)
+-+|||.=+|+|.=++.++.. +..+|+.-|+|+.+++..++|++.+++.. ++..+.|+..+. ..||+|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEE
Confidence 458999999999999999887 55699999999999999999999999865 788888887742 256654
No 260
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=92.79 E-value=0.023 Score=48.90 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=36.6
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~ 205 (259)
.+.++||+|.|.|.++..++.. +.+|.+.+.|..|+...++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhh
Confidence 4579999999999999999887 6699999999999988776
No 261
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.67 E-value=0.17 Score=43.00 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=28.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYS 196 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S 196 (259)
.++.+|||+||..|.+++-..++ +...|.|||+-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 57899999999999999987776 34479999963
No 262
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.64 E-value=0.25 Score=43.37 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=51.4
Q ss_pred CCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhc-CCcc-eEEEEecccCC--------CcceeE
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSC-IKFLVMNISVQ--------ILTYFI 231 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~-~l~~-i~~i~~D~~~~--------~~~fdv 231 (259)
++.++||||.|.-.+=-.+--+ |. +.+|.|+++.++..|+.....+ ++.+ |+.....-..- ...||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5678999999987654444333 66 8999999999999999998876 5543 66554322221 115666
Q ss_pred EEecccCccc
Q 025035 232 CKSERNEHYT 241 (259)
Q Consensus 232 v~~~v~~h~~ 241 (259)
+.++--+|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 6555555544
No 263
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.49 E-value=0.11 Score=49.19 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccC
Q 025035 160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISV 224 (259)
Q Consensus 160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~ 224 (259)
....++..|.|+.||.|-+++.+++.++ +|++-|.++.+++..+.+++.+.+. +|+...+|+..
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 3445678899999999999999999986 9999999999999999999887764 37777777655
No 264
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.48 E-value=0.083 Score=47.39 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=34.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~ 201 (259)
..+++|||+|||.|...+.....|...++..|+|...++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 468999999999999999998888669999999998875
No 265
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.41 E-value=0.26 Score=44.99 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=48.2
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++..||.--|.|..+..+++. +..+|+|+|..+.+++.+++++...+ .++.++++++.++
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l 81 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNL 81 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGH
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHH
Confidence 45779999999999999999987 44699999999999999998876553 3799999988774
No 266
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.95 E-value=0.79 Score=39.46 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=54.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEEec
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~~~ 235 (259)
.++.+||=+|..+|.....++.- |...++++++|+.+....-..+++. .||--+.+|+..+.. ..|+++.+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEEe
Confidence 46899999999999999999987 5457999999998766665555443 378888899887532 44555554
Q ss_pred cc
Q 025035 236 RN 237 (259)
Q Consensus 236 v~ 237 (259)
+.
T Consensus 153 VA 154 (231)
T COG1889 153 VA 154 (231)
T ss_pred cC
Confidence 44
No 267
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.94 E-value=0.39 Score=44.95 Aligned_cols=44 Identities=27% Similarity=0.256 Sum_probs=36.7
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~ 206 (259)
..-..|+|+|.|.|.++..++-...-.|.+||-|+...+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 34578999999999999999877334999999999888877764
No 268
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.56 E-value=0.46 Score=44.26 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=50.3
Q ss_pred CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
..+|||.=||+|.=++.++.. +..+|+.=|+|+.+++.+++|...+...+...+..|+..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~ 113 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANA 113 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHH
Confidence 679999999999999999887 444899999999999999999998844456666677655
No 269
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.95 E-value=1.4 Score=40.02 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++..||.--|.|..+..+.++. ..+++|+|..+.+|+.|+++....+ .++++++..+.++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l 85 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL 85 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence 456899999999999999999983 3479999999999999999988766 4799999887763
No 270
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.79 E-value=0.13 Score=38.69 Aligned_cols=67 Identities=22% Similarity=0.165 Sum_probs=20.9
Q ss_pred EEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----C-cceeEEEecc
Q 025035 169 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----I-LTYFICKSER 236 (259)
Q Consensus 169 LDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----~-~~fdvv~~~v 236 (259)
||||+..|..+..+++. +..+++++|..+. .+..++..++.++. ++++++++..+. + .++|+++...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988887764 2137999999995 33344444434443 599999998763 1 3666665544
No 271
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.74 E-value=0.5 Score=43.37 Aligned_cols=43 Identities=33% Similarity=0.437 Sum_probs=37.7
Q ss_pred CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
..+.+||-+|+|+ |..+...++. |.++|+.+|.++.-++.|++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 5688999999994 7777777776 88899999999999999998
No 272
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.69 E-value=0.46 Score=43.00 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=31.8
Q ss_pred CCEEEEEccCcCh----hHHHHHhc-C----CCcEEEEeCCHHHHHHHHHH
Q 025035 165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 165 ~~~VLDiGcG~G~----~~~~la~~-g----~~~V~giD~S~~~i~~a~~~ 206 (259)
.-+|+..||++|- +++.+.+. + .-+|+|+|+|+.+|+.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 3699999999997 33333332 1 12799999999999999984
No 273
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.46 E-value=0.59 Score=36.53 Aligned_cols=52 Identities=27% Similarity=0.466 Sum_probs=40.0
Q ss_pred CCCEEEEEccCcCh-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035 164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL 227 (259)
Q Consensus 164 ~~~~VLDiGcG~G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~ 227 (259)
..++|.++|-|-=. .+..|+++|+ .|+++|+++. ++ + ..++|++.|++++..
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~ 65 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TA---P-EGLRFVVDDITNPNI 65 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cC---c-ccceEEEccCCCccH
Confidence 35699999988654 5777888897 9999999986 11 1 258999999999644
No 274
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.41 E-value=0.43 Score=37.88 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=33.9
Q ss_pred CCCEEEEEccCcCh-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc----ceeEEEe
Q 025035 164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL----TYFICKS 234 (259)
Q Consensus 164 ~~~~VLDiGcG~G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~----~fdvv~~ 234 (259)
...+|+++|-|.=. .+..|.++|+ .|+++|+.+. ++. . .+.+++.|+.++.. ..+++.+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEE
Confidence 35699999999654 5777778887 9999999996 111 2 57899999999654 4555554
No 275
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=89.66 E-value=0.57 Score=42.86 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHH
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~ 202 (259)
..+||--|||.|+++..|+..|+ .+-|=++|--|+=.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLIC 187 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHH
Confidence 56899999999999999999998 78888988877643
No 276
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.60 E-value=0.48 Score=43.24 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=41.7
Q ss_pred EEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 168 VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
|+|+.||.|.+...|.+.|+.-+.++|+++.+++.-+.|.. + .++++|+.+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~ 52 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKI 52 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhh
Confidence 68999999999999998898667789999999998888753 2 3345677664
No 277
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.45 E-value=0.55 Score=42.06 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=31.9
Q ss_pred CCEEEEEccCcCh----hHHHHHhcC------CCcEEEEeCCHHHHHHHHH
Q 025035 165 SWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 165 ~~~VLDiGcG~G~----~~~~la~~g------~~~V~giD~S~~~i~~a~~ 205 (259)
.-+|+-.||++|- +++.+.+.+ .-+|+|+|+|..+|+.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 5799999999997 334444432 1289999999999999986
No 278
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=89.38 E-value=0.4 Score=42.67 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~ 209 (259)
++.++||||||+-.+...-+..-+.+|+..|+++..++..++-++.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCC
Confidence 4679999999997665444444466999999999998877775543
No 279
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.14 E-value=2.2 Score=41.47 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=46.8
Q ss_pred CCCEEEEEccCcChhHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-g----~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~ 224 (259)
+..+|+|..||+|.+.....+. + ...++|.|+++....+|+-+.-.+|+. ++....+|-..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~ 252 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS 252 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc
Confidence 4569999999999988776665 2 246899999999999999998888775 34555555444
No 280
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=88.99 E-value=0.42 Score=44.20 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=54.2
Q ss_pred ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHH-------HHHHhHhcCCc-c-eEEEEecccCCCc
Q 025035 160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-------AQSLANRDGFS-C-IKFLVMNISVQIL 227 (259)
Q Consensus 160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~-------a~~~~~~~~l~-~-i~~i~~D~~~~~~ 227 (259)
....+|.-|+|---|||.+++..+..|. .|+|.||.-.++.. .+.|+++.|.. . +..+.+|..+.+.
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence 3446789999999999999999999987 99999999888873 35577777743 3 7788889888654
No 281
>PRK08339 short chain dehydrogenase; Provisional
Probab=88.92 E-value=2.6 Score=36.80 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++++|-.|++.|. ++..|+++|. +|+.++.++..++...+......-.++.++.+|+.+.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR 70 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence 357788988887665 4556666787 8999999987776666554332113688889999874
No 282
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=88.80 E-value=0.76 Score=39.82 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=38.6
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecccCccccc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSERNEHYTFD 243 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v~~h~~~D 243 (259)
..++|||||=+......-. +.-.|+.||+++. ..++....|....+... ...||+|...+++.+..+
T Consensus 52 ~lrlLEVGals~~N~~s~~--~~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS--GWFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccccc--CceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 3689999998776655432 3337999999871 12222233333333221 227887766666555444
No 283
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.19 E-value=1.5 Score=41.20 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=32.9
Q ss_pred cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA 207 (259)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~ 207 (259)
.+.++.+||-|.+|..+.+-. +..+.++|++||+|+..+.+.+-+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 445788999996555555554 5555669999999998877766544
No 284
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.15 E-value=1.4 Score=40.47 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
..+++|+-||.|.+...+...|+.-+.++|+.+.+++.-+.+... -.++..|+.+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~ 58 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKEL 58 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhc
Confidence 458999999999999999999987888999999999888887642 45566666653
No 285
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=88.13 E-value=2 Score=38.86 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=56.0
Q ss_pred CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-----ceeEEE
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-----TYFICK 233 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-----~fdvv~ 233 (259)
+.++.|+-+| ---..+++++-.| ..+|..+|+.+..|+...+.++..|+.||+.++.|+.++.. .||+..
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 5678899999 4445555555543 34999999999999999999999999889999999999643 788654
No 286
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=2.6 Score=39.27 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCCEEEEEccCcChhHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHhHhcC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDG 211 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g---------~~~V~giD~S~~~i~~a~~~~~~~~ 211 (259)
.+-.+++||.|.|.++.-+++.. ..++..|++|+...+.-+++++...
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 35689999999999988777641 3489999999999888888776543
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=87.58 E-value=0.35 Score=46.71 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=27.2
Q ss_pred CEEEEEccCcChhHHHHHhcCCCcEEEE---eCCHHHHHHHHH
Q 025035 166 WSVLDIGTGNGLLLQELSKQGFSDLTGV---DYSEDAINLAQS 205 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~g~~~V~gi---D~S~~~i~~a~~ 205 (259)
..+||+|||+|.++.+|..++. .+..+ |..+..++.|.+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh
Confidence 4789999999999999999865 22222 334445555554
No 288
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.42 E-value=3.3 Score=35.65 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=43.6
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|+++|. +|++++.++..++...+..+..+ .++.++.+|+.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 70 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQH 70 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence 57889999986654 4555666677 89999999887776666555444 3678888898773
No 289
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.27 E-value=2.3 Score=38.58 Aligned_cols=60 Identities=27% Similarity=0.255 Sum_probs=50.6
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
..++.||==|.|.|. ++..++++|+ +++..|+++...+...+..++.| +++...+|+.+.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~ 98 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDR 98 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCH
Confidence 458899999999886 6888888887 99999999988888888777665 789999999884
No 290
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.23 E-value=1.4 Score=42.69 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=45.6
Q ss_pred CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI 226 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~ 226 (259)
..+++|+-||.|.+...+-..|..-|.++|+.+.+.+.-+.|.... +....+.+|+.+..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCc
Confidence 4589999999999999998888877889999999888877764211 13345566776653
No 291
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=87.15 E-value=2.2 Score=37.28 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=49.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++++||.||-|-|.+.-++-++...+=+.|+..+..++.++...-+.. .++..+.+-+.+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeD 160 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWED 160 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHh
Confidence 5689999999999999999988866678889999999999998764433 267777776665
No 292
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=86.89 E-value=1.7 Score=41.35 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=53.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++-+|||+++-.|.-+.++|.. +...|++.|.+..-+...+.++.+.|+.+......|..+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef 304 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREF 304 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccc
Confidence 57889999999999987777765 3337999999999999999999999998877788888754
No 293
>PRK07904 short chain dehydrogenase; Provisional
Probab=86.54 E-value=3.4 Score=35.92 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=39.7
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHH-HHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~-i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..++++|..+|+.++.++.. ++.+.+..+..+..+++++.+|+.+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~ 72 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT 72 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence 46789988886544 2333444543489999987653 55554444444433689999998764
No 294
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.42 E-value=0.98 Score=41.81 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=36.6
Q ss_pred CCCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~ 206 (259)
..++.+|+-+|+| .|..++.+++. | .+|+++|.|+.-++.|++.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence 3568899999888 45578888884 7 5999999999999999885
No 295
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=86.34 E-value=0.82 Score=39.35 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCCEEEEEccCcChhHHHHHhc-----CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~-----g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~ 225 (259)
++..|+++|.-.|.-++.+|.. +..+|+|||+.-...+.... +...+ ++|+++++|..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEEECCCCCH
Confidence 5789999999999988887753 34599999995433222111 11222 3799999998873
No 296
>PRK07890 short chain dehydrogenase; Provisional
Probab=86.13 E-value=4.8 Score=34.52 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|++++.++..++...+.....+ .++.++..|+.+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 66 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDE 66 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCH
Confidence 46789988865544 3444555687 89999999877666655554434 2688899998763
No 297
>PRK07035 short chain dehydrogenase; Provisional
Probab=86.02 E-value=4.6 Score=34.61 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=42.0
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|++++.+...++...+.....+ .++.++..|+.+.
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 69 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEM 69 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCH
Confidence 46788989877664 3455556676 89999999877766655554444 2577888888763
No 298
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=85.99 E-value=4.8 Score=34.56 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++||-.|++.|. ++..|+++|. +|+.++.++..++...+..+..+. ++.++.+|+.+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~ 72 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADE 72 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCH
Confidence 357889988865443 2333445576 899999998777666555554442 588899998873
No 299
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.71 E-value=4.5 Score=35.67 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=41.7
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|+++|. ++..|+++|. +|+.++.++..++...+.+...+. ++.++..|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~ 67 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHR 67 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCH
Confidence 46788888876554 3445555677 899999998777666555544443 578888998773
No 300
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.68 E-value=5 Score=34.41 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=41.6
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|+.++.++..++...+..+..+ .++.++.+|+.+.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRD 68 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 46789999875544 3344555576 89999999877666655554444 2688899999873
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.33 E-value=1.6 Score=40.33 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=36.9
Q ss_pred CCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHh
Q 025035 164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA 207 (259)
Q Consensus 164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~ 207 (259)
++.+|+-+|||+ |.++..+++. |.++|+++|.++.-++.|++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 345999999994 7777777776 8789999999999999998843
No 302
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.90 E-value=5.5 Score=34.35 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=42.7
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|+.++.++..++...+.+...+ -.++.++.+|+.+.
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDA 70 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCH
Confidence 46789988876554 3455556677 89999999887776666554421 12588899998874
No 303
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.72 E-value=2 Score=39.97 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~ 206 (259)
.++.+||.+|||. |..+..+++. |..+|++++.++..++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4678999999988 8888888887 554699999999998888874
No 304
>PRK06125 short chain dehydrogenase; Provisional
Probab=84.55 E-value=6.2 Score=34.02 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=41.0
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++++|-.|++.|. ++..|+++|. +|++++.++..++...+.+....-.++.++..|+.+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 68 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS 68 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 46789999976553 2344555677 999999998777666555443322357888888876
No 305
>PRK07677 short chain dehydrogenase; Provisional
Probab=84.43 E-value=5.8 Score=34.05 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=40.0
Q ss_pred CEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 166 ~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+++|-.|++.|. ++..|+++|. +|++++.++..++...+.+...+ .++.++.+|+.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 578888886654 3445556677 89999998877666655554433 368889999876
No 306
>PRK08703 short chain dehydrogenase; Provisional
Probab=84.22 E-value=6.2 Score=33.54 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=38.7
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
++++||-.||+.|. ++..|+++|. +|++++.++..++...+.+...+...+.++..|+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 46789999965443 3344455576 899999998776666555444332345666777653
No 307
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.17 E-value=4.6 Score=32.09 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=40.8
Q ss_pred EEEEEccCcCh---hHHHHHhcCCCcEEEEeCC--HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~~g~~~V~giD~S--~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+||-.|+++|. ++..|+++|...|+.+..+ ...++...+.++..+ .++.+++.|+.+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~ 64 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDP 64 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccc
Confidence 57778877554 4555555666689999998 556666655555555 4799999998873
No 308
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.06 E-value=6.1 Score=34.03 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCCEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.| |+|.++..+++ +|. +|+.++-+...++...+.....+. ++.++.+|+.+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~ 73 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGI-DALWIAADVADE 73 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCH
Confidence 467899888 45565555554 476 899999998777766665544432 678899999873
No 309
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.92 E-value=6.4 Score=34.14 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=43.6
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|++.|. ++..|+++|. +|+.++.++..++...+..+..+. ++.++.+|+.+.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~ 71 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDE 71 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCH
Confidence 46789999887655 3455666677 799999998777766666554442 688899999873
No 310
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.79 E-value=6.5 Score=33.78 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=41.5
Q ss_pred CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|+ +|.++..++ ++|. +|++++.++..++...+..+..+. ++.++..|+.+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~ 71 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDH 71 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCH
Confidence 5788998885 555555544 4576 899999998777666655554442 578888898873
No 311
>PRK06194 hypothetical protein; Provisional
Probab=83.76 E-value=5.9 Score=34.70 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=39.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|+.+|.+...++...+.....+. ++.++.+|+.+.
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~ 67 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDA 67 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCH
Confidence 35788877754433 3334455576 899999987766655554443332 688899998873
No 312
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.72 E-value=6.8 Score=33.23 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+++++|-.|++.|. ++..++++|. +|++++.++..++.+.+.....+ .++.+++.|+.+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTD 65 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 46789988864443 2233444576 89999999877666655554433 267888888876
No 313
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.56 E-value=6 Score=33.89 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=43.9
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+++++|-.|++.|. ++..|+++|. +|+.++.++..++...+..+..+. ++.....|+.+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~ 65 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFS 65 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCC
Confidence 46789999999877 5666777787 899999999888777666555443 46666777766
No 314
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.14 E-value=7.6 Score=33.31 Aligned_cols=60 Identities=8% Similarity=0.116 Sum_probs=42.2
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|++.|. +|+.++.++..++...+.....+ .++.++.+|+.+.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDE 67 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 46788888776553 3455556677 89999999887776666555444 2678888898773
No 315
>PRK07102 short chain dehydrogenase; Provisional
Probab=83.04 E-value=6.3 Score=33.59 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=37.7
Q ss_pred CEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++||-.|+. |.++.. |+++|. +|++++.++...+...+.....+-.+++++++|+.+.
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 468877754 554444 444576 8999999887665444433333223688999999874
No 316
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.91 E-value=7.4 Score=32.86 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=39.3
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..+++.|. +|++++-++..++...+..... .++.++.+|+.+.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~ 65 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSST 65 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCH
Confidence 46789999986433 2333444576 8999999987766554443332 2578889998873
No 317
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.82 E-value=7.2 Score=34.75 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=41.2
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|++++.+++.++...+.....+. ++.++.+|+.+.
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~ 101 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDL 101 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence 46789988876554 3344455576 899999998777666555544332 577888998873
No 318
>PRK07109 short chain dehydrogenase; Provisional
Probab=82.77 E-value=7.2 Score=35.59 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=42.8
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|+.++.++..++...+.++..+. ++.++.+|+.+.
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~ 69 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADA 69 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCH
Confidence 46788888865544 2344556676 899999998887776666655553 688889998773
No 319
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.55 E-value=4 Score=30.76 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=33.5
Q ss_pred cCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 173 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 173 cG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
||.|.++..+++. +..+|+.+|.++..++.+++. .+.++.+|..+.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~ 52 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDP 52 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhh
Confidence 6677787777765 333899999999998887762 367889999884
No 320
>PRK07814 short chain dehydrogenase; Provisional
Probab=82.35 E-value=8.4 Score=33.38 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=40.5
Q ss_pred CCCEEEEEccCcChhHH----HHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~----~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++ |.++. .|+++|. +|++++.++..++...+.....+ .++.++..|+.+.
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 71 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHP 71 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 46789988864 44444 4455577 99999999877665555544333 2588888998874
No 321
>PRK07454 short chain dehydrogenase; Provisional
Probab=82.12 E-value=9.4 Score=32.39 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=39.2
Q ss_pred CCEEEEEccCcChhHHHH----HhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~l----a~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++|-.|+ +|.++..+ +++|. +|++++.++...+...+..+..+ .++.++.+|+.+.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP 67 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence 467888885 45544444 44576 89999999876655555444333 2688899999874
No 322
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=0.72 Score=38.42 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD 210 (259)
Q Consensus 164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~ 210 (259)
.+.+||++|.| +|..++.+|.. ....|...|-++..++-.++....+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 36789999999 55566666655 4558999999999999888865544
No 323
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=81.84 E-value=8.7 Score=33.01 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|+.++.+...++......+..+. ++.++..|+.+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~ 72 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSE 72 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence 47899999976654 3444555676 899999888777666554444332 577888888874
No 324
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.58 E-value=7.9 Score=35.39 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+++||-.|++.|. ++..|+++|. +|+.++.++..++...+.++..+. ++.++..|+.+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d 67 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTD 67 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCC
Confidence 46788888876544 3445556677 899999999888777766655553 67788888876
No 325
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=81.55 E-value=8.6 Score=32.82 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=39.7
Q ss_pred CCCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEeccc
Q 025035 163 LSSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNIS 223 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~ 223 (259)
.++++||-.|+. |.++.. |++.|. +|++++.+...++...+.+...+..++.++..|+.
T Consensus 10 ~~~k~vlItG~~-g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 10 LKDRIILVTGAG-DGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 457899999864 444444 444576 99999999877766655555444345677777775
No 326
>PRK07831 short chain dehydrogenase; Provisional
Probab=81.30 E-value=9.9 Score=32.79 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=42.1
Q ss_pred CCCCEEEEEccC-cCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTG-NGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~ 225 (259)
..++++|-.|+. .|. ++..|+++|. +|+.+|.++..++...+..+. .+..++.++.+|+.+.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSE 81 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCH
Confidence 346789999863 332 3455566677 799999988777766665543 3323688889998763
No 327
>PRK08589 short chain dehydrogenase; Validated
Probab=81.24 E-value=9 Score=33.46 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=39.0
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|+++|. +|++++.++ .++...+.....+ .++.++..|+.+.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 66 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE-AVSETVDKIKSNG-GKAKAYHVDISDE 66 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH-HHHHHHHHHHhcC-CeEEEEEeecCCH
Confidence 46788888877654 3455666676 899999984 4444444343333 2578888898873
No 328
>PRK08223 hypothetical protein; Validated
Probab=81.02 E-value=10 Score=34.31 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCCEEEEEccCc--ChhHHHHHhcCCCcEEEEeC
Q 025035 164 SSWSVLDIGTGN--GLLLQELSKQGFSDLTGVDY 195 (259)
Q Consensus 164 ~~~~VLDiGcG~--G~~~~~la~~g~~~V~giD~ 195 (259)
++.+||-+|||. +..+..|+..|..+++.+|.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 478999999993 44688888889889999983
No 329
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=80.82 E-value=10 Score=32.17 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=39.3
Q ss_pred CCCEEEEEccCcChhHHHH----HhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~l----a~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
++++||-.|++ |.++..+ +++|. +|++++.++.......+.....+ .++.++.+|+.+
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 63 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITD 63 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 36788888764 4444444 44566 89999999877666655544433 268888999876
No 330
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=80.80 E-value=2.3 Score=37.66 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDA 199 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~ 199 (259)
...+||++|+|+|..+..++.....+|+..|.....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~ 121 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV 121 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH
Confidence 356799999999999998888755589999987644
No 331
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.56 E-value=11 Score=31.92 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=39.0
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++ |.++.. |+++|. +|++++-++..+....+.....+ .++.++.+|+.+.
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 67 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDR 67 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 46788877754 454444 455576 89999998766555544444333 2588899998873
No 332
>PRK07062 short chain dehydrogenase; Provisional
Probab=80.48 E-value=11 Score=32.59 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=42.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|++.|. ++..|+++|. +|++++.++..++.+.+..... +-.++.++..|+.+.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 71 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDE 71 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCH
Confidence 47789999877654 4455556677 8999999987776665554332 112577888888874
No 333
>PRK07326 short chain dehydrogenase; Provisional
Probab=80.32 E-value=8.9 Score=32.32 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=38.2
Q ss_pred CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+++||-+|+ +|.++..++ ++|. +|++++.++.......+..... .++.++.+|+.+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 3578888884 555555554 4466 7999999886665554443322 368888889876
No 334
>PRK08643 acetoin reductase; Validated
Probab=79.99 E-value=10 Score=32.47 Aligned_cols=59 Identities=27% Similarity=0.438 Sum_probs=39.3
Q ss_pred CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++|-.|+..|. ++..|+++|. +|++++.++..++.........+ .++.++.+|+.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 63 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDR 63 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 3567777755443 2334455576 89999999877766666554443 2578888998874
No 335
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=79.68 E-value=11 Score=32.90 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=41.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|+++|. +|+.++.++...+...+.....+. ++.++.+|+.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~ 71 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLDK 71 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCH
Confidence 46788888876554 3445555677 899999988766655554443332 688889998773
No 336
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.65 E-value=11 Score=32.40 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
..+++||-.|++.|. ++..|++.|. +|+.++.+. ..+.+.+.....+ .++.++.+|+.+.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~D~~~~ 75 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGT-NWDETRRLIEKEG-RKVTFVQVDLTKP 75 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCc-HHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 357889999887664 3445556677 898888873 3344444443333 3588889998873
No 337
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.38 E-value=11 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=39.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-+|++.|. ++..|+++|. +|++++.++..++........ + .++.++.+|+.+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~ 65 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDE 65 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCH
Confidence 46788888765433 3344555577 799999998766655554432 2 2588899998873
No 338
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.12 E-value=11 Score=32.46 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=40.9
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..++++|. +|++++.++..++....... .+ .++.++.+|+.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~d~ 65 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YP-GRHRWVVADLTSE 65 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cC-CceEEEEccCCCH
Confidence 46788888876544 4455566686 89999999877766554442 22 2688888998874
No 339
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.10 E-value=5.8 Score=35.13 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=41.9
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~ 210 (259)
..+..|||.-+|+|..+....+.|. +.+|+|+++.-++.+.++....
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 5678999999999999998888765 9999999999999999988754
No 340
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.03 E-value=12 Score=31.98 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=39.9
Q ss_pred CCCEEEEEccCcChhHH----HHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~----~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|+. |.++. .|+++|. +|++++.++...+.+.+.....+ .++.++.+|+.+.
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 68 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTNE 68 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCCH
Confidence 46678866654 44444 4445577 89999999877766666554444 2578889998873
No 341
>PRK09242 tropinone reductase; Provisional
Probab=78.93 E-value=12 Score=32.18 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=41.2
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|++.|. ++..|+++|. +|+.++.+...++...+..... +-.++.++.+|+.+.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~ 72 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDD 72 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCH
Confidence 47789999886543 3444555576 8999999887776665554433 112588888998763
No 342
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.93 E-value=13 Score=31.47 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=39.7
Q ss_pred CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|+ +|.++..++ ++|. +|++++.++..+....+..+..+ .++.++++|+.+.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 68 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADP 68 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 4678887775 455555544 4576 89999988876665555544333 3688899999873
No 343
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.91 E-value=9.1 Score=33.01 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=39.0
Q ss_pred EEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+||-.|++.|. ++..|+++|. +|+.++.++..++.+.+.+...+ ++.++.+|+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG--EVYAVKADLSD 59 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCC
Confidence 57888876554 3455556677 89999999887776666554333 57888889876
No 344
>PRK07024 short chain dehydrogenase; Provisional
Probab=78.52 E-value=8.7 Score=33.10 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=37.4
Q ss_pred CEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++||-.|++.|. ++..|+++|. +|+.++.++..++...+.....+ ++.++.+|+.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 62 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDA 62 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCH
Confidence 477878765433 3344445576 89999998877665544433222 688899999873
No 345
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=78.49 E-value=12 Score=31.96 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=40.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|++.|. ++..|+++|. +|+.++.++..++...+.....+ .++.++.+|+.+.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 70 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEG-IKAHAAPFNVTHK 70 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEecCCCCH
Confidence 46788888865543 3444555576 89999998877666555544433 2577788888763
No 346
>PRK06949 short chain dehydrogenase; Provisional
Probab=78.32 E-value=14 Score=31.58 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=40.4
Q ss_pred CCCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
..+++||-.| |+|.++..++ ++|. +|++++.++..++.........+ .++.++.+|+.+.
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 70 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEG-GAAHVVSLDVTDY 70 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCH
Confidence 3578888888 4445444444 4466 89999999887766655544333 2578888888763
No 347
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=77.96 E-value=4.5 Score=38.17 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.9
Q ss_pred CCEEEEEccCcChhHHHHHhc
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ 185 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~ 185 (259)
..+|+|+|||+|..++.+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~ 84 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDV 84 (386)
T ss_pred ceeEEEecCCCCccHHHHHHH
Confidence 568999999999998877654
No 348
>PRK09186 flagellin modification protein A; Provisional
Probab=77.83 E-value=13 Score=31.62 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=39.5
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|++++.++..++...+.... .+-..+.++.+|+.+.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 67 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQ 67 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCH
Confidence 46788888875443 2444445576 899999888776665554432 2222477888999873
No 349
>PRK09291 short chain dehydrogenase; Provisional
Probab=77.82 E-value=13 Score=31.77 Aligned_cols=58 Identities=16% Similarity=0.326 Sum_probs=38.0
Q ss_pred CEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++||-.|++.|. ++..|+++|. +|+++..++...+..++.....+. ++.++.+|+.+.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 63 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDA 63 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCH
Confidence 478888875443 2333445576 899999887666655555444443 588888898773
No 350
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.77 E-value=14 Score=32.24 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=38.8
Q ss_pred CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~ 225 (259)
++++|-.|++.|. ++..|+++|. +|++++-++..++...+.....+. .++.++.+|+.+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 4578888865443 2333455576 899999887766655554443333 2588899999874
No 351
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.64 E-value=4.2 Score=39.82 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=35.7
Q ss_pred CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+|+-+||| .|..++..++. |. +|+++|.++..++++++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 358899999999 57777777776 76 89999999999888877
No 352
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.99 E-value=3.4 Score=39.93 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=40.8
Q ss_pred CCCEEEEEccC-cChh-HHHHHhcCCCcEEEEeCC-------------------HHHHHHHHHHhHhcC-CcceEEEEec
Q 025035 164 SSWSVLDIGTG-NGLL-LQELSKQGFSDLTGVDYS-------------------EDAINLAQSLANRDG-FSCIKFLVMN 221 (259)
Q Consensus 164 ~~~~VLDiGcG-~G~~-~~~la~~g~~~V~giD~S-------------------~~~i~~a~~~~~~~~-l~~i~~i~~D 221 (259)
.+++||-+||| -|.- +--|+..|+.+|+.||.. +.-...|++..++.+ --++..++++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 57899999998 3553 334445588889988832 111234444444443 1258899999
Q ss_pred ccCCCc
Q 025035 222 ISVQIL 227 (259)
Q Consensus 222 ~~~~~~ 227 (259)
+.+..+
T Consensus 91 I~e~~f 96 (603)
T KOG2013|consen 91 IKEPKF 96 (603)
T ss_pred ccCcch
Confidence 998744
No 353
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=76.69 E-value=7.5 Score=30.74 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=30.3
Q ss_pred EEccCcC--hhHHHHH--hc-CCCcEEEEeCCHHHHHHHHHH--hHhcCC-cceEEEEecc
Q 025035 170 DIGTGNG--LLLQELS--KQ-GFSDLTGVDYSEDAINLAQSL--ANRDGF-SCIKFLVMNI 222 (259)
Q Consensus 170 DiGcG~G--~~~~~la--~~-g~~~V~giD~S~~~i~~a~~~--~~~~~l-~~i~~i~~D~ 222 (259)
|||++.| .....+. .. ...+|+++|+++..++..+++ +..... ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 5555543 22 234899999999999999888 443322 1255554433
No 354
>PRK07576 short chain dehydrogenase; Provisional
Probab=76.64 E-value=15 Score=31.81 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=38.6
Q ss_pred CCCEEEEEccCcChhHH----HHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~----~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
++++||-.|. +|.++. .|+++|. +|++++.++..++...+.....+ .++.++..|+.+
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRD 69 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCC
Confidence 5678888885 444444 4445576 89999998876665544444333 257788888876
No 355
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.51 E-value=12 Score=33.78 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=39.0
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCH----------HHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE----------DAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~----------~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|++.|. +|+.++.+. ..++...+.....+. ++.++++|+.+.
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~ 79 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVP 79 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCH
Confidence 47889999987765 4555556676 899888763 234444444443332 567888898873
No 356
>PTZ00357 methyltransferase; Provisional
Probab=76.37 E-value=8.3 Score=39.21 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=40.1
Q ss_pred CEEEEEccCcChhHHHHHhc----CCC-cEEEEeCCHHHHHHHHHHhH---hc-CC-----cceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQELSKQ----GFS-DLTGVDYSEDAINLAQSLAN---RD-GF-----SCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~----g~~-~V~giD~S~~~i~~a~~~~~---~~-~l-----~~i~~i~~D~~~~ 225 (259)
..|+-+|+|-|-+.....+. |.. +|++|+.++.++...+.+.. .. +. ..++++..|+++.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 36899999999876555443 332 89999999665444443321 12 10 2489999999996
No 357
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.19 E-value=15 Score=31.57 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=37.4
Q ss_pred CEEEEEccCcChhHHHH----HhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~l----a~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++||-.|+ +|.++..+ +++|. +|++++.++..++...+.....+ .++.++.+|+.+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 62 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG-GEALVVPTDVSDA 62 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 46777765 44454444 44576 89999999876665555444444 2688888898774
No 358
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.03 E-value=17 Score=30.66 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=39.5
Q ss_pred CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|+ +|.++..++ ++|. +|++++.++...+...+.....+ .++.++.+|+.+.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDY 68 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCH
Confidence 3567888885 556555544 4477 89999998876655444443333 2688889998763
No 359
>PRK07791 short chain dehydrogenase; Provisional
Probab=76.00 E-value=14 Score=32.69 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=38.7
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCH---------HHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE---------DAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~---------~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+++++|-.|++.|. ++..|++.|. +|+.++.+. ..++...+.+...+. ++.++..|+.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~ 75 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIAD 75 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCC
Confidence 57789999987765 3455666677 788888764 444444444433332 57778888877
No 360
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.91 E-value=17 Score=32.72 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=42.1
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~ 225 (259)
..++++|-.|++.|. ++..|+++|. +|+.+..++...+.+.+.+... +-.++.++..|+.+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL 77 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence 357788888877665 3455556676 8999999877666555544332 222588999999873
No 361
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.70 E-value=15 Score=31.67 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=37.3
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|++.|. ++..|+++|. +|+.++.+.. +...+..+..+ .++.++..|+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~ 67 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALG-RKFHFITADLIQQ 67 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcC-CeEEEEEeCCCCH
Confidence 47889999877665 3455566677 8988887542 22233333333 2688889998873
No 362
>PRK05650 short chain dehydrogenase; Provisional
Probab=75.69 E-value=16 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=37.5
Q ss_pred EEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+||-.|+..|. ++..|+++|. +|+.++.+...++.........+ .++.++.+|+.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 61 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDY 61 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence 57777765443 3344455576 89999998877666555554444 2688888998763
No 363
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.67 E-value=18 Score=30.74 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCCEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|+ +|.++..+++ +|. +|++++.++...+......+..+ .++.++.+|+.+.
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 65 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDE 65 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 3567886664 5666666555 466 89999999877766655554434 3688888998863
No 364
>PRK08226 short chain dehydrogenase; Provisional
Probab=75.64 E-value=15 Score=31.53 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=37.4
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|+..|. ++..|+++|. +|++++.++...+.+++.. ..+ .++.++.+|+.+.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~-~~~-~~~~~~~~Dl~~~ 66 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELC-GRG-HRCTAVVADVRDP 66 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHH-HhC-CceEEEECCCCCH
Confidence 46788888775433 3334444576 8999999886544444332 223 2578888998873
No 365
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.52 E-value=15 Score=32.86 Aligned_cols=60 Identities=18% Similarity=0.089 Sum_probs=39.9
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC-HHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S-~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+++++|-.|++.|. ++..|+++|. +|+.+|.+ ...++...+.+...+ .++.++.+|+.+
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dv~d 73 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAG-AKAVAVAGDISQ 73 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcC-CeEEEEeCCCCC
Confidence 357889999888765 4566666787 89999875 334444434343333 267888888876
No 366
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.51 E-value=0.94 Score=43.73 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=54.8
Q ss_pred HhhccCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC
Q 025035 157 EENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV 224 (259)
Q Consensus 157 ~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~ 224 (259)
.......++-+|||.=|++|.-++..++. |..+|++-|.++.+++..+++.+.++..+ +.-.+.|+..
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~ 172 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANV 172 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHH
Confidence 33334456789999999999999999987 56699999999999999999999887654 5566666655
No 367
>PRK08267 short chain dehydrogenase; Provisional
Probab=75.42 E-value=14 Score=31.84 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=37.5
Q ss_pred CEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++|-.|++.|. ++..|+++|. +|++++.++..++...+... + .++.++++|+.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~ 60 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDR 60 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCH
Confidence 357888766443 3444555576 89999998877666554332 2 3688999999873
No 368
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.33 E-value=17 Score=30.87 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=38.4
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.||.. .++.. |+++|. +|++++-+...++...+... .+ .++.++.+|+.+.
T Consensus 4 ~~k~~lItG~sg-~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~ 65 (252)
T PRK06138 4 AGRVAIVTGAGS-GIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSA 65 (252)
T ss_pred CCcEEEEeCCCc-hHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCH
Confidence 467889888754 44443 445576 89999988766655544433 22 2588889998773
No 369
>PRK06720 hypothetical protein; Provisional
Probab=74.62 E-value=23 Score=29.09 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=40.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+++.+|-.|.+.|. ++..|++.|. +|+.+|.+...++...+.....+. .+.++..|+.+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 76 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGG-EALFVSYDMEK 76 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 46788888877655 4555666676 899999998776655444443332 46677888865
No 370
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=74.45 E-value=6.4 Score=31.79 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=29.7
Q ss_pred cEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035 189 DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ 225 (259)
Q Consensus 189 ~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~ 225 (259)
+|+|+|+-+.+|+.++++++..++. ++++++..=.++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l 38 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL 38 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH
Confidence 5899999999999999999998875 499998776664
No 371
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=74.17 E-value=20 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|+++|. +|+.++.++.. ....+.....+ .++.++.+|+.+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~-~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELV-HEVAAELRAAG-GEALALTADLETY 68 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHH-HHHHHHHHhcC-CeEEEEEEeCCCH
Confidence 46788988876554 4455556676 89999988643 33333333333 2577888898873
No 372
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=74.12 E-value=5.7 Score=34.85 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=45.1
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+.-|++||-|.|.++..+.+.|.+++..+++....+.-.+-..+.... ++....+|+..
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IHh~D~LR 109 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG-KLRIHHGDVLR 109 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc-ceEEeccccce
Confidence 4678999999999999999999888999999888777666555543322 45555666544
No 373
>PRK12829 short chain dehydrogenase; Provisional
Probab=74.09 E-value=17 Score=31.04 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=38.2
Q ss_pred CCCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++++|-.|++ |.++..++ ++|. +|++++.++..++...+... +. ++.++.+|+.+.
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~~ 70 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLP--GA-KVTATVADVADP 70 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh--cC-ceEEEEccCCCH
Confidence 357899988875 44444444 4477 79999998876655443332 11 567888888763
No 374
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=73.87 E-value=19 Score=30.91 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=37.5
Q ss_pred CCEEEEEccCcChhH----HHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccC
Q 025035 165 SWSVLDIGTGNGLLL----QELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISV 224 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~----~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~ 224 (259)
+++||-.|++ |.++ ..|+++|. +|+.+|.+...++...+.... .+-.++.++.+|+.+
T Consensus 2 ~k~ilItG~~-~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 2 NQVAVVIGGG-QTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 3578888865 4444 44555576 899999988766555444332 221258888999887
No 375
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.79 E-value=7.9 Score=32.24 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=29.2
Q ss_pred EEEEEccCc-C-hhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh
Q 025035 167 SVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (259)
Q Consensus 167 ~VLDiGcG~-G-~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~ 209 (259)
+|.-||+|+ | .++..++..|. +|+.+|.+++.++.+++.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHH
Confidence 366678873 2 35555666687 999999999999888886654
No 376
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.67 E-value=10 Score=35.78 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=46.9
Q ss_pred CEEEEEccCc-Ch-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEEeccc
Q 025035 166 WSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICKSERN 237 (259)
Q Consensus 166 ~~VLDiGcG~-G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~~~v~ 237 (259)
.+||-||||. |. .+..|++++-.+|+..|-|...++.+..... .++++++.|+.+.+. .+|++++...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4799999952 33 2334455564599999999988877766432 268889989888532 5576665554
Q ss_pred C
Q 025035 238 E 238 (259)
Q Consensus 238 ~ 238 (259)
-
T Consensus 78 ~ 78 (389)
T COG1748 78 P 78 (389)
T ss_pred c
Confidence 3
No 377
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.65 E-value=6.7 Score=35.60 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=32.2
Q ss_pred CCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
++.+||-+||| .|..+..+++. |..+|+++|.++.-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 57789989876 45556666665 66579999999988888876
No 378
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=73.41 E-value=16 Score=31.51 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=38.5
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|+++|. +|+.++.++..++...+.. + .++.++++|+.+.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~ 64 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---G-DHVLVVEGDVTSY 64 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCH
Confidence 46789999876554 3445555677 8999999987665544322 2 2577888888763
No 379
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=72.99 E-value=8.6 Score=35.73 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=35.5
Q ss_pred CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~ 206 (259)
.++.+|.-+||| -|..++.-++. |..+++++|+++.-+++|++.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 567889999998 46666655554 778999999999999999873
No 380
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=72.97 E-value=9.7 Score=33.93 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=42.0
Q ss_pred CCCEEEEEccCcChhHHHHHhcC------CCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL 227 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g------~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~ 227 (259)
++..++|+|||.|.++.+++..- ...++.||-...-. .+......... ..++-+..|+.++.+
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccch
Confidence 46789999999999999998862 34899999854222 23333332221 246777788887544
No 381
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=72.92 E-value=18 Score=28.48 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=27.5
Q ss_pred CCCEEEEEccCc--ChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035 164 SSWSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 164 ~~~~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~~~i~~a~~ 205 (259)
++.+|+-+|||. +..+..+++.|..+|+.+|.++...+...+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~ 61 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAE 61 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 467899999863 223444444454589999999876555443
No 382
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=72.86 E-value=21 Score=29.88 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++||-.|+ +|.++..++ ++|. +|++++-++...+.........+ .++.++.+|+.+.
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 66 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAG-GEARVLVFDVSDE 66 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence 568888876 566555554 4576 79999998876665555444333 2588888998763
No 383
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.75 E-value=19 Score=31.93 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCH-HHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~-~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++||-.|++.|. ++..|+++|. +|+.++.+. ..++......+..+ .++.++.+|+.+.
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 108 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDE 108 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence 356789988876544 4455556676 899888764 23333333333334 2688899998773
No 384
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.61 E-value=21 Score=30.36 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=36.6
Q ss_pred EEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 167 SVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++|-.|+. |.++.. |++.|. +|+.++.++..++...+.+...+. ++.++.+|+.+.
T Consensus 2 ~~lItG~s-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~ 61 (254)
T TIGR02415 2 VALVTGGA-QGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDK 61 (254)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence 57777754 444444 444576 899999887666555544444442 688899998773
No 385
>PLN02780 ketoreductase/ oxidoreductase
Probab=72.17 E-value=20 Score=32.45 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=42.3
Q ss_pred CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccC
Q 025035 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISV 224 (259)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~ 224 (259)
++.+|-.|++.|. ++..|+++|. +|+.++.+++.++...+.++.. +..++..+..|+.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 6789999987764 5666667787 8999999998887766655432 21257777888764
No 386
>PRK05875 short chain dehydrogenase; Provisional
Probab=72.15 E-value=23 Score=30.69 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=38.5
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.| ++.. |+++|. +|++++.++..++...+.....+ ..++.++.+|+.+.
T Consensus 6 ~~k~vlItGasg~-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~ 70 (276)
T PRK05875 6 QDRTYLVTGGGSG-IGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDE 70 (276)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCH
Confidence 4678999986543 4444 445577 89999988766554444333221 13688888998773
No 387
>PLN02253 xanthoxin dehydrogenase
Probab=72.05 E-value=20 Score=31.25 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|++ |.++.. |+++|. +|++++.++...+...+.... + .++.++.+|+.+.
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~d~ 78 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-E-PNVCFFHCDVTVE 78 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-C-CceEEEEeecCCH
Confidence 46788888755 444444 445576 899999987665544443321 1 2588899999873
No 388
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=71.85 E-value=8.8 Score=35.35 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=29.9
Q ss_pred CCCEEEEEccC-cChhHHH-HHhcCCCcEEEEeCCHHHHHHHHH
Q 025035 164 SSWSVLDIGTG-NGLLLQE-LSKQGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 164 ~~~~VLDiGcG-~G~~~~~-la~~g~~~V~giD~S~~~i~~a~~ 205 (259)
.+.-|+-+||| .|.+..- |++.|+.++..+|+.+..+.....
T Consensus 73 ~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNr 116 (430)
T KOG2018|consen 73 TNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNR 116 (430)
T ss_pred cCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhh
Confidence 46779999997 5666544 455599999999987766554433
No 389
>PRK09135 pteridine reductase; Provisional
Probab=71.68 E-value=24 Score=29.71 Aligned_cols=60 Identities=12% Similarity=-0.034 Sum_probs=36.7
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCC-HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S-~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++ |.++.. |+++|. +|++++.+ +...+...+.....+...+.++.+|+.+.
T Consensus 5 ~~~~vlItGa~-g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 69 (249)
T PRK09135 5 SAKVALITGGA-RRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDP 69 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 35689999965 555444 444576 89999975 33344433333322223578889998773
No 390
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=71.54 E-value=21 Score=30.25 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=37.2
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|++++.++. +...+.....+ .++.++..|+.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~-~~~~~~~~D~~~~ 64 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALG-RRFLSLTADLSDI 64 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcC-CceEEEECCCCCH
Confidence 47889999986553 3455555677 8999987652 22333333333 2578888998873
No 391
>PRK08265 short chain dehydrogenase; Provisional
Probab=71.41 E-value=19 Score=31.06 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|+++|. +|+.++.++..++...+.. + .++.++.+|+.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~ 64 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDD 64 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCH
Confidence 46788888865543 3445555677 8999999876544433322 2 2578889999874
No 392
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=70.98 E-value=5.7 Score=34.43 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=32.2
Q ss_pred CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~ 208 (259)
...+++|+-||+|.++..+...+. +|+.-|+++..+...+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHHHHHh
Confidence 468999999999999998877544 89999999988888775444
No 393
>PRK06198 short chain dehydrogenase; Provisional
Probab=70.92 E-value=26 Score=29.94 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=37.7
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.| ++.. |+++|...|++++.++..+......+...+ .++.++..|+.+.
T Consensus 5 ~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 68 (260)
T PRK06198 5 DGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG-AKAVFVQADLSDV 68 (260)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence 4678898886544 4444 444576349999988765554443333333 2578888898763
No 394
>PRK07774 short chain dehydrogenase; Provisional
Probab=70.69 E-value=28 Score=29.49 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=38.4
Q ss_pred CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.| |+|.++..++ ++|. +|++++.++.......+.....+ .++.++..|+.+.
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 67 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDP 67 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 467888887 4455555444 4576 89999998766655544443332 2577888898874
No 395
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=70.57 E-value=23 Score=31.77 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=38.4
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|+..|. ++..|+++|. +|+.++.+....+.+.+.....+ .++.++..|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 67 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDL 67 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCH
Confidence 36678888865443 3444555576 89999988766555544432222 2588889998773
No 396
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.50 E-value=20 Score=31.24 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=37.9
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHH-------HHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDA-------INLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~-------i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.|. ++..|+++|. +|+.++.+... ++...+.....+. ++.++.+|+.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~ 74 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDE 74 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCH
Confidence 46789988886654 3455556676 89999876531 3333333333332 688888998774
No 397
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=70.40 E-value=13 Score=34.03 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=36.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~ 208 (259)
-.+.+|.-||+|.-..+.++++.+. +|.++|+++..|..-+-+..
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHH
Confidence 3578999999998878888887754 99999999988877665543
No 398
>PRK05599 hypothetical protein; Provisional
Probab=70.36 E-value=22 Score=30.52 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=37.9
Q ss_pred EEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+|-.|++.|. ++..|+ +|. +|+.++.++..++...+.++..+-..+.++.+|+.+.
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~-~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGE-DVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCH
Confidence 47777776655 233344 364 8999998887777666655544433477888888874
No 399
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.28 E-value=16 Score=30.95 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=26.6
Q ss_pred CCCEEEEEccCc-C-hhHHHHHhcCCCcEEEEeCC
Q 025035 164 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 196 (259)
Q Consensus 164 ~~~~VLDiGcG~-G-~~~~~la~~g~~~V~giD~S 196 (259)
.+.+||-+|||. | ..+..|++.|..+++.+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 578999999993 4 36777777798899999976
No 400
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.16 E-value=23 Score=30.60 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=37.1
Q ss_pred CCCEEEEEccCcC-h----hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNG-L----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G-~----~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++.+|-.|+++| . ++..|+++|. +|+.++.++...+..++..+..+ .+.++.+|+.+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 72 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREP 72 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCH
Confidence 5788999998752 3 3445555676 89988888654443444333222 345677888773
No 401
>PRK05855 short chain dehydrogenase; Validated
Probab=70.09 E-value=21 Score=34.34 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=41.5
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+.++|-+|+..|. ++..|+++|. +|+.++.+...++...+..+..+. ++.++.+|+.+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~ 376 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDA 376 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence 45788888764443 3344555577 799999998777766665554453 688899999884
No 402
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=70.00 E-value=25 Score=29.76 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=37.7
Q ss_pred CEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++||-.| |+|.++..+++ +|. +|++++.++...+.........+ .++.++.+|+.+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 62 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKE 62 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCH
Confidence 3577776 45555555554 476 89999998866655555444333 2688889998874
No 403
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=69.71 E-value=23 Score=30.34 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=36.9
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|+.++.+...++...+.. + .++.++.+|+.+.
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~ 64 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQ 64 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCH
Confidence 46788888854443 3344445576 8999999887665544432 2 2578888888763
No 404
>PRK08628 short chain dehydrogenase; Provisional
Probab=69.45 E-value=25 Score=30.03 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=37.6
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+++++|-.|++.|. ++..|+++|. +|+.++.++..++..++ ....+ .++.++..|+.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~-~~~~~-~~~~~~~~D~~~ 66 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEE-LRALQ-PRAEFVQVDLTD 66 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHH-HHhcC-CceEEEEccCCC
Confidence 356788888865443 3444455576 78889888766643333 23233 268889999877
No 405
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.36 E-value=9.5 Score=34.72 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCCCEEEEEccC-cChhHHHHHhc--CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTG-NGLLLQELSKQ--GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+||-+||| .|.++..++++ |..+|+++|.++.-++.+++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 457899999986 34445555553 55589999999988888765
No 406
>PRK08251 short chain dehydrogenase; Provisional
Probab=69.23 E-value=28 Score=29.51 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=38.8
Q ss_pred CCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~ 225 (259)
++++|-.|+ +|.++..++ ++|. +|+.++.++..++.......... -.++.++.+|+.+.
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence 457887775 555555444 4465 89999998877766555443321 12688899999874
No 407
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=69.05 E-value=6.1 Score=33.92 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=40.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhc----C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~----g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++..|+++|.-.|.-++++|.. | .-+|+++|++-..++-+... .++|.|+.++-.+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~d 129 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTD 129 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCC
Confidence 35779999999999988888874 4 12899999986655433321 2467777776655
No 408
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.87 E-value=12 Score=33.64 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.6
Q ss_pred CEEEEEccC--cChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035 166 WSVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA 207 (259)
Q Consensus 166 ~~VLDiGcG--~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~ 207 (259)
.+|--||+| .+.++..++..|. +|+.+|.+++.++.+++++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i 48 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRI 48 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHH
Confidence 478889998 4446666777787 9999999999998877654
No 409
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=68.53 E-value=29 Score=29.89 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEe-CCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVD-YSEDAINLAQSLANR-DGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD-~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~ 225 (259)
.++++||-.|++.|. ++..|++.|. +|+.+. .++..++...+..+. .+ .++.++..|+.+.
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 71 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYG-IKAKAYPLNILEP 71 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 357889988877664 4556666677 788775 345444443333322 23 2688899998873
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=67.99 E-value=12 Score=33.33 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=31.4
Q ss_pred CEEEEEccC--cChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035 166 WSVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA 207 (259)
Q Consensus 166 ~~VLDiGcG--~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~ 207 (259)
.+|.-||+| .+.++..++..|. +|+.+|.++..++.+++..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH
Confidence 468889998 3346666777787 8999999999998776543
No 411
>PRK07825 short chain dehydrogenase; Provisional
Probab=67.76 E-value=24 Score=30.55 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=36.8
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|+.++.++..++...+... ++.++.+|+.+.
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~ 62 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELG-----LVVGGPLDVTDP 62 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc-----cceEEEccCCCH
Confidence 35788988876554 2344555576 79999998876654433221 467788888773
No 412
>PRK06196 oxidoreductase; Provisional
Probab=67.74 E-value=25 Score=31.45 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|++++.++..++...+... ++.++.+|+.+.
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~ 83 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID-----GVEVVMLDLADL 83 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCH
Confidence 46788988865443 2344444576 89999998766554433321 367888888874
No 413
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=67.52 E-value=26 Score=30.06 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=35.3
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.+++++|-.|+..|. ++..|++.|. +|++++.+.. +...+.....+ .++.++..|+.+
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~ 68 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALG-RRFLSLTADLRK 68 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcC-CeEEEEECCCCC
Confidence 346788888876544 3444555576 8999987642 22222222233 257888888876
No 414
>PRK06114 short chain dehydrogenase; Provisional
Probab=67.23 E-value=32 Score=29.48 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCH-HHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~-~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++++|-.|++.| ++.. |++.|. +|+.++.+. ..++...+.....+ .++.++..|+.+.
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 70 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAG-RRAIQIAADVTSK 70 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 5678888875554 4444 444576 899999764 33444444443333 2577888888773
No 415
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=67.16 E-value=26 Score=30.23 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+++++|-.|++.|. ++..|+++|. +|++++.++..++...+ ..+ .++.++.+|+.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~---~~~-~~~~~~~~D~~~ 62 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEA---AHG-DAVVGVEGDVRS 62 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh---hcC-CceEEEEeccCC
Confidence 46788888876543 3445555676 89999998866554433 122 257788888876
No 416
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.67 E-value=14 Score=34.09 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCCCEEEEEccCcChhHHHH-Hh-cCCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGNGLLLQEL-SK-QGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~l-a~-~g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+|.-+|+|.=.++... ++ +|.++++|||+++.-.+.|++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 46778888887754433333 33 288899999999999888887
No 417
>PRK06197 short chain dehydrogenase; Provisional
Probab=66.51 E-value=33 Score=30.39 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=38.5
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|+..|. ++..|+++|. +|+++..+....+.+.+.... .+-.++.++..|+.+.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSL 79 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCH
Confidence 56788877764433 2334445576 899999887666555444432 2223588889998874
No 418
>PLN02740 Alcohol dehydrogenase-like
Probab=66.25 E-value=13 Score=34.48 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=32.2
Q ss_pred CCCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
..++.+||-+||| .|..+..+++. |..+|+++|.++.-++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3568899999876 34455556655 65579999999988887765
No 419
>PRK07832 short chain dehydrogenase; Provisional
Probab=66.17 E-value=31 Score=29.95 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=34.7
Q ss_pred EEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
++|-.|++.|. ++..++++|. +|+.++.++..++...+.....+-..+.++.+|+.+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD 61 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC
Confidence 46667665443 2334455576 799999888776665554443332235567788776
No 420
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=66.01 E-value=23 Score=32.65 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=26.7
Q ss_pred CCCEEEEEccCc--ChhHHHHHhcCCCcEEEEeCCH
Q 025035 164 SSWSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSE 197 (259)
Q Consensus 164 ~~~~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~ 197 (259)
.+.+||-+|||. +..+..|++.|..+++.+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 468999999993 3356777777988999999763
No 421
>PRK07775 short chain dehydrogenase; Provisional
Probab=65.65 E-value=39 Score=29.45 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=37.4
Q ss_pred CCEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++|-.|++ |.++..+++ +|. +|+.+..+...++.........+ .++.++.+|+.+.
T Consensus 10 ~~~vlVtGa~-g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 71 (274)
T PRK07775 10 RRPALVAGAS-SGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADG-GEAVAFPLDVTDP 71 (274)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 4678888864 555555554 476 89888887765554444443333 2578888898873
No 422
>PRK07806 short chain dehydrogenase; Provisional
Probab=65.36 E-value=39 Score=28.58 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=35.0
Q ss_pred CCCEEEEEccCcChhHHHH----HhcCCCcEEEEeCCH-HHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~l----a~~g~~~V~giD~S~-~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|+.. .++..+ +++|. +|+++..+. ..++......+..+ .++.++.+|+.+.
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 68 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDE 68 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 467899888644 344444 44576 798887653 23333333333333 2578888898873
No 423
>PRK05872 short chain dehydrogenase; Provisional
Probab=65.12 E-value=33 Score=30.38 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++++||-.|++.|. ++..|+++|. +|+.++.++..++...+.+.. + ..+..+.+|+.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d 68 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-D-DRVLTVVADVTD 68 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCC
Confidence 357789988876554 3445555676 899999998776655443321 2 245566688876
No 424
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=65.12 E-value=30 Score=27.20 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCCCEEEEEccCc--ChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CCcceeEEEec
Q 025035 163 LSSWSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QILTYFICKSE 235 (259)
Q Consensus 163 ~~~~~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~~~fdvv~~~ 235 (259)
.++++||-||+|. ...+..|+..|..+|+.+.-+..-.+...+.+ +-.++.++..+-.. ....+|++...
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPLEDLEEALQEADIVINA 82 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGGGHCHHHHTESEEEE-
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeHHHHHHHHhhCCeEEEe
Confidence 3588999999973 22455566668878999999875443333333 22235554432222 22367765544
No 425
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=64.90 E-value=10 Score=31.85 Aligned_cols=38 Identities=32% Similarity=0.580 Sum_probs=23.3
Q ss_pred EEEEEccC-cCh-hHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035 167 SVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 167 ~VLDiGcG-~G~-~~~~la~~g~~~V~giD~S~~~i~~a~~ 205 (259)
+|--+|.| .|. .+..|++.|+ +|+|+|+++.-++...+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh
Confidence 45666666 232 4555666787 99999999988777654
No 426
>PRK07201 short chain dehydrogenase; Provisional
Probab=64.79 E-value=31 Score=34.15 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=40.4
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|++.|. ++..|+++|. +|++++.++..++...+.....+ .++.++.+|+.+.
T Consensus 370 ~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~ 432 (657)
T PRK07201 370 VGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKG-GTAHAYTCDLTDS 432 (657)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEecCCCH
Confidence 46678877765443 2334445576 89999999877766655554444 2688889998873
No 427
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=64.67 E-value=15 Score=33.47 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+||-+|||. |..+..+++. |. +|++++.++.-++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4578999999864 6666666766 66 79999999988877755
No 428
>PRK05717 oxidoreductase; Validated
Probab=64.47 E-value=31 Score=29.53 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=35.8
Q ss_pred CCCCEEEEEccCcChhHH----HHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~----~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+.+++||-.|++ |.++. .|+++|. +|+.+|.++.......+ ..+ .++.++.+|+.+.
T Consensus 8 ~~~k~vlItG~s-g~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~---~~~-~~~~~~~~Dl~~~ 68 (255)
T PRK05717 8 HNGRVALVTGAA-RGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAK---ALG-ENAWFIAMDVADE 68 (255)
T ss_pred cCCCEEEEeCCc-chHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---HcC-CceEEEEccCCCH
Confidence 357788877764 44444 4445576 89999988754333222 222 2578889998873
No 429
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=64.20 E-value=18 Score=32.25 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=48.6
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCC-cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEEe
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICKS 234 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~-~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~~ 234 (259)
.++.+||=+|.++|.....+..- |.. -|+++++|+..=+..-..+++. +||--|..|++.+.. -.|+|++
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeEEEEec
Confidence 46899999999999988877776 332 6999999975533333333222 477778888877432 3455555
Q ss_pred ccc
Q 025035 235 ERN 237 (259)
Q Consensus 235 ~v~ 237 (259)
++.
T Consensus 233 Dva 235 (317)
T KOG1596|consen 233 DVA 235 (317)
T ss_pred cCC
Confidence 543
No 430
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=64.08 E-value=15 Score=32.53 Aligned_cols=42 Identities=33% Similarity=0.459 Sum_probs=32.9
Q ss_pred CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+||..||| .|..+..+++. |. +|++++.++...+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence 457789888876 47777777876 65 79999999988877754
No 431
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=64.05 E-value=12 Score=33.98 Aligned_cols=75 Identities=20% Similarity=0.377 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhhhhccccccchhccccchHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHH
Q 025035 127 VVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202 (259)
Q Consensus 127 ~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~ 202 (259)
.+.+|-..+.+....++..+++..+.+++...+... ...-.++-..-|+|..+..++..|+ .|+|+|-+-.+.+.
T Consensus 212 iFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l~~tG~-DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 212 IFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAKGSGGALEELAQTGY-DVVGLDWTVDPAEA 287 (359)
T ss_pred HHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEcCcchHHHHHHhcCC-cEEeecccccHHHH
Confidence 344555554444444444444444444444333222 2334677888999999999999999 99999998777553
No 432
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=63.41 E-value=37 Score=29.03 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=26.7
Q ss_pred CCCEEEEEccCc-C-hhHHHHHhcCCCcEEEEeCC
Q 025035 164 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 196 (259)
Q Consensus 164 ~~~~VLDiGcG~-G-~~~~~la~~g~~~V~giD~S 196 (259)
+..+|+-+|||. | .++..|++.|..+++.+|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467999999993 4 46777778898889999976
No 433
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=63.28 E-value=16 Score=33.69 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=16.4
Q ss_pred CCCEEEEEccCcChhHHHHHhc
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ 185 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~ 185 (259)
+.-+|+|+||..|..++.+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHHH
Confidence 3568999999999999887754
No 434
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=63.02 E-value=26 Score=30.28 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=35.8
Q ss_pred EEEEEccCc--ChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++=+|||. +.++..|.+.|. .|+.+|.++..++...... ...+.+++|..+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~-----~~~~~v~gd~t~~ 56 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE-----LDTHVVIGDATDE 56 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh-----cceEEEEecCCCH
Confidence 567777772 334555666676 9999999998877633310 1477888888873
No 435
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=62.68 E-value=16 Score=35.96 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=35.1
Q ss_pred CEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+|+=+||| ..+..+++ +|. +|+.+|.+++.++.+++ . ....+++|..+.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE----R---GIRAVLGNAANE 471 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----C---CCeEEEcCCCCH
Confidence 456666655 45444444 355 89999999998888765 2 467888898874
No 436
>PRK12743 oxidoreductase; Provisional
Probab=62.67 E-value=44 Score=28.64 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCEEEEEccCcChhHHHHH----hcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++||-.|++.| ++..++ ++|. +|+.+.. +...++.+.+..+..+ .++.++..|+.+.
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 64 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHG-VRAEIRQLDLSDL 64 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence 457888886544 444444 4476 7877753 4555555544444444 2688899998873
No 437
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=62.59 E-value=17 Score=33.21 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+||-+||| .|..+..+++. |..+|+++|.++.-++.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 467899999875 35556666665 66469999999988887754
No 438
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.41 E-value=19 Score=33.14 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=31.0
Q ss_pred CEEEEEccC--cChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025035 166 WSVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 166 ~~VLDiGcG--~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~ 206 (259)
++|--||+| ...++..++..|. +|+..|.+++.++.+++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~ 49 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRAN 49 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHH
Confidence 578899998 3445666777788 999999999888776553
No 439
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.26 E-value=46 Score=27.93 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=38.2
Q ss_pred CCEEEEEccCcChhHHHHH----hcCCCcEEEE-eCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la----~~g~~~V~gi-D~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++||-+|+ +|.++..++ ++|. +|+.+ +.++..++...+.....+ .++.++..|+.+.
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSE 67 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 567888875 555555544 4466 78888 888776665555444333 2588899999874
No 440
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.23 E-value=17 Score=33.44 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+||-+||| .|..+..+++. |..+|+++|.++.-++.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 467899999886 35556666665 66579999999988877755
No 441
>PRK12744 short chain dehydrogenase; Provisional
Probab=62.21 E-value=47 Score=28.39 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCC----HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYS----EDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S----~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.| ++.. |+++|. +|+.+..+ ....+...+..+..+. ++.++..|+.+.
T Consensus 7 ~~k~vlItGa~~g-IG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~ 73 (257)
T PRK12744 7 KGKVVLIAGGAKN-LGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTA 73 (257)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCH
Confidence 4678998886554 4444 444576 66666542 3333333333333332 688889998863
No 442
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=62.16 E-value=30 Score=31.98 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=26.5
Q ss_pred CCCEEEEEccCc-C-hhHHHHHhcCCCcEEEEeCC
Q 025035 164 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 196 (259)
Q Consensus 164 ~~~~VLDiGcG~-G-~~~~~la~~g~~~V~giD~S 196 (259)
...+||-+|||. | .++..|++.|..+++.+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467999999993 3 35677777798899999975
No 443
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=62.13 E-value=18 Score=34.56 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=31.4
Q ss_pred CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
...+.+|+-+|||. |.....+++. |. +|+++|.++.-++.|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 35789999999995 5544444443 76 89999999877666654
No 444
>PRK06182 short chain dehydrogenase; Validated
Probab=62.06 E-value=37 Score=29.37 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=33.8
Q ss_pred CCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++||-.|++.| ++..++ ++|. +|++++.++..++.... . +++++.+|+.+.
T Consensus 3 ~k~vlItGasgg-iG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~ 58 (273)
T PRK06182 3 KKVALVTGASSG-IGKATARRLAAQGY-TVYGAARRVDKMEDLAS----L---GVHPLSLDVTDE 58 (273)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCH
Confidence 567888886544 444444 4466 89999988765543321 1 467888888773
No 445
>PRK06180 short chain dehydrogenase; Provisional
Probab=62.00 E-value=33 Score=29.93 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=35.9
Q ss_pred CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++||-.||+.|. ++..|+++|. +|++++.++..++...+. .+ .++.++.+|+.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~-~~~~~~~~D~~d~ 62 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEAL---HP-DRALARLLDVTDF 62 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhh---cC-CCeeEEEccCCCH
Confidence 4678888876543 3344445576 899999988765443321 12 2577888888763
No 446
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=61.98 E-value=24 Score=31.46 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=36.1
Q ss_pred CCEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC
Q 025035 165 SWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI 226 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~ 226 (259)
+++||-.| |+|.++..+++ +|. +|+++..+..............+. .+++++.+|+.+..
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 69 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG 69 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence 56888887 56776666655 366 788776665433322222221222 35889999998753
No 447
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.96 E-value=19 Score=32.05 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=30.8
Q ss_pred CEEEEEccCc--ChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035 166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLA 207 (259)
Q Consensus 166 ~~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~ 207 (259)
.+|.-||+|. +.++..+++.|. +|+.+|.++..++.++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH
Confidence 4688889883 335555666676 8999999999988887653
No 448
>PRK08324 short chain dehydrogenase; Validated
Probab=61.79 E-value=34 Score=34.59 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|+++|.++..++.+.+..... .++.++.+|+.+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~ 482 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDE 482 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCH
Confidence 46788888864432 3344445576 8999999987776665544322 3688888898773
No 449
>PRK06057 short chain dehydrogenase; Provisional
Probab=61.68 E-value=31 Score=29.48 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
++++||-+|++.|. ++..|+++|. +|++++.++.-++...+.. + ..++..|+.+
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~---~---~~~~~~D~~~ 62 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEV---G---GLFVPTDVTD 62 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHc---C---CcEEEeeCCC
Confidence 57899999885443 2344445576 8999999876554433322 1 2456677766
No 450
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=61.52 E-value=20 Score=32.32 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCH
Q 025035 162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 197 (259)
Q Consensus 162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~ 197 (259)
+.++....|+|...|.++-.|.+++- .|++||--+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ 243 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP 243 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccch
Confidence 35788999999999999999999976 999999876
No 451
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=61.44 E-value=8 Score=38.63 Aligned_cols=35 Identities=31% Similarity=0.301 Sum_probs=28.3
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSE 197 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~ 197 (259)
.+...|||+||.+|.++.-.++. +. +-|+|||+-+
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 35778999999999999987776 32 3799999765
No 452
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.35 E-value=20 Score=31.72 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=30.0
Q ss_pred EEEEEccC--cChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035 167 SVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 167 ~VLDiGcG--~G~~~~~la~~g~~~V~giD~S~~~i~~a~~ 205 (259)
+|--||+| .+.++..+++.|. +|+++|.++..++.+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~ 44 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLA 44 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Confidence 67888888 4566777777777 89999999999876653
No 453
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=61.34 E-value=35 Score=28.18 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=23.9
Q ss_pred EEEEEccC-cCh-hHHHHHhcCCCcEEEEeCCH
Q 025035 167 SVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE 197 (259)
Q Consensus 167 ~VLDiGcG-~G~-~~~~la~~g~~~V~giD~S~ 197 (259)
+|+-+||| .|. ++..|++.|..+++.+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48889999 344 57777778988899999764
No 454
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=61.34 E-value=23 Score=31.23 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=40.5
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
.++.+|-.|.-.|. .+..|+.+|. .+.++|-+.+..+.-.+.-+.+.-..+.|+++|+.+
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgi-k~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~ 66 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGI-KVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTN 66 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCc-hheeehhhhhCHHHHHHHhccCCCceEEEEEecccc
Confidence 47788888755554 3455566676 899999988875544443333333358999999988
No 455
>PRK12827 short chain dehydrogenase; Provisional
Probab=61.23 E-value=55 Score=27.47 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=35.3
Q ss_pred CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeC----CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~----S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|+. |.++.. |+++|. +|++++. ++..++.........+ .++.++.+|+.+.
T Consensus 5 ~~~~ilItGas-g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 71 (249)
T PRK12827 5 DSRRVLITGGS-GGLGRAIAVRLAADGA-DVIVLDIHPMRGRAEADAVAAGIEAAG-GKALGLAFDVRDF 71 (249)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-eEEEEcCcccccHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 35678877654 444444 445576 7888764 3344444434333333 2688999998874
No 456
>PRK05993 short chain dehydrogenase; Provisional
Probab=60.98 E-value=33 Score=29.94 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=34.0
Q ss_pred CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
+++||-.|++.|. ++..|+++|. +|++++.++..++..+. . .++++.+|+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d 58 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEA----E---GLEAFQLDYAE 58 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----C---CceEEEccCCC
Confidence 4678888875443 3344445576 89999998876654332 1 36677888876
No 457
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=60.87 E-value=18 Score=36.06 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=35.0
Q ss_pred CEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+|+=+| .|.++..+++ +|. +++.+|.+++.++.+++ . ....+.+|..+.
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~ 454 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKM-RITVLERDISAVNLMRK----Y---GYKVYYGDATQL 454 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh----C---CCeEEEeeCCCH
Confidence 4565555 5555555544 355 89999999999888865 2 356788998874
No 458
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=60.78 E-value=19 Score=33.08 Aligned_cols=43 Identities=33% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+||-+|+| .|..+..+++. |..+|+++|.++.-++.+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 457889889876 34555666665 66579999999988887765
No 459
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=60.59 E-value=16 Score=32.52 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=49.0
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC--cceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l--~~i~~i~~D~~~~ 225 (259)
+.++.+|--|.++|. ++..|++.|. +|+.++.+++.++...+.....+. .++..+.+|+.+.
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 72 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKE 72 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCH
Confidence 457889999988886 5778888887 999999999988888776655544 2588889999864
No 460
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.58 E-value=44 Score=29.21 Aligned_cols=59 Identities=20% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCCEEEEEccCc--C---hhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~--G---~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++.+|-.|++. | .++..|++.|. +|+.++.++...+..++..+..+ ...++++|+.+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~ 69 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDI 69 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCH
Confidence 467899999875 4 25666667787 89988877644444444333333 234678888773
No 461
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.11 E-value=22 Score=31.63 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=29.9
Q ss_pred EEEEEccC--cChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025035 167 SVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 167 ~VLDiGcG--~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~ 206 (259)
+|.-||+| .+.++..+++.|. +|+.+|.++..++.+.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQE 43 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Confidence 67888887 2335566666777 899999999999887754
No 462
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=60.11 E-value=18 Score=31.70 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=30.0
Q ss_pred CCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
++.+||-+|+| .|..+..+++. |..+|+++|.++.-++.+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 57789999875 34455555555 76559999999887777765
No 463
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=59.96 E-value=43 Score=33.26 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=48.8
Q ss_pred cCCCCCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035 161 KYLSSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ 225 (259)
Q Consensus 161 ~~~~~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~ 225 (259)
....+++||--| |+|.++..+.++ +.++++.+|.++..+......+... +..++.++.+|+.+.
T Consensus 246 ~~~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~ 314 (588)
T COG1086 246 AMLTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDR 314 (588)
T ss_pred hHcCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccH
Confidence 335788888776 567777666665 6679999999999998888877553 334689999999984
No 464
>PRK07985 oxidoreductase; Provisional
Probab=59.85 E-value=50 Score=29.25 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=37.9
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC--HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S--~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++++|-.|++.|. ++..|+++|. +|+.++.+ ...++...+.....+. ++.++.+|+.+.
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~ 112 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDE 112 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCH
Confidence 356789999976544 4555566677 78887654 2334444444433342 577888898873
No 465
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.76 E-value=56 Score=28.68 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=36.2
Q ss_pred CCCEEEEEccCc-Ch----hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGN-GL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~-G~----~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++.+|-.|+++ +. ++..|++.|. +|+.++.++...+.+++..+..+. . .++..|+.+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~ 67 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKP 67 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCH
Confidence 467899999862 23 3455556687 899999886433333333333332 2 5677888873
No 466
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.41 E-value=27 Score=29.52 Aligned_cols=42 Identities=33% Similarity=0.530 Sum_probs=32.6
Q ss_pred CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
.++.+||..|+|. |..+..+++. | .+|++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH
Confidence 4578999999996 6666666665 5 499999999877777654
No 467
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=59.40 E-value=31 Score=31.99 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=26.1
Q ss_pred CCCEEEEEccCc--ChhHHHHHhcCCCcEEEEeCC
Q 025035 164 SSWSVLDIGTGN--GLLLQELSKQGFSDLTGVDYS 196 (259)
Q Consensus 164 ~~~~VLDiGcG~--G~~~~~la~~g~~~V~giD~S 196 (259)
.+.+||-+|||. +..+..|+..|..+++.+|..
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999993 345777777798899999954
No 468
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=59.36 E-value=56 Score=29.22 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=47.1
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQI 226 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~~ 226 (259)
.++++|--|.-+|. ++..|+++|+ +|+.+--+++-++..++.++. .++ .+.++..|+.+..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v-~v~vi~~DLs~~~ 69 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGV-EVEVIPADLSDPE 69 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCc-eEEEEECcCCChh
Confidence 46788888887776 5677777787 999999999887777666654 444 6899999998853
No 469
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=59.34 E-value=49 Score=29.67 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=38.2
Q ss_pred CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++|-.|++.|. ++..|+++|..+|+.+..++..++.+.+.....+ .++.++..|+.+.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 65 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK-DSYTIMHLDLGSL 65 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEcCCCCH
Confidence 4578888876655 3445556672389999888776655544433222 2577888888773
No 470
>PRK07074 short chain dehydrogenase; Provisional
Probab=59.32 E-value=54 Score=27.92 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=36.2
Q ss_pred CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++|-.|++.|. ++..|+++|. +|++++.++.-++...+... + .++.++..|+.+.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~ 61 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--D-ARFVPVACDLTDA 61 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCH
Confidence 3578888876543 3344455576 89999998766554433321 1 2578888888773
No 471
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.29 E-value=36 Score=29.50 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCCEEEEEccCc-Chh----HHHHHhcCCCcEEEEeCCH---HHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGN-GLL----LQELSKQGFSDLTGVDYSE---DAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~-G~~----~~~la~~g~~~V~giD~S~---~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++|-.|+++ +.+ +..|+++|. +|+.++.+. ..++...+... + .++.+++.|+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dv~d~ 71 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--G-QESLLLPCDVTSD 71 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--C-CceEEEecCCCCH
Confidence 478899999863 444 444555576 888886543 33333322221 2 3577888898873
No 472
>PRK06841 short chain dehydrogenase; Provisional
Probab=59.14 E-value=51 Score=28.01 Aligned_cols=57 Identities=26% Similarity=0.310 Sum_probs=37.0
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|++++.++...+.+.+. .+ .++.++..|+.+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~~ 73 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQL---LG-GNAKGLVCDVSDS 73 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh---hC-CceEEEEecCCCH
Confidence 47789988866544 3445556676 899999887654333322 12 2567888888763
No 473
>PRK06500 short chain dehydrogenase; Provisional
Probab=58.89 E-value=49 Score=27.86 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.|++.|. ++..|+++|. +|++++.++..++...+. .+ .++.++++|+.+.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~~ 64 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAE---LG-ESALVIRADAGDV 64 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHH---hC-CceEEEEecCCCH
Confidence 35678888765443 3444555676 899999887655444332 23 2577888887663
No 474
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=58.85 E-value=59 Score=27.86 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=38.5
Q ss_pred EEEEEccCcCh---hHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035 167 SVLDIGTGNGL---LLQELSK----QGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~ 225 (259)
.||-.|++.|. ++..|++ .|. +|+.+..++..++...+.++.. .-.++.++.+|+.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~ 67 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAE 67 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCH
Confidence 46777877654 2344554 455 8999999988777766655432 112588889998873
No 475
>PRK06101 short chain dehydrogenase; Provisional
Probab=58.78 E-value=36 Score=28.91 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=33.4
Q ss_pred CEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++|-.|+. |.++.. |+++|. +|++++.++..++...+. + .++.++.+|+.+.
T Consensus 2 ~~vlItGas-~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~ 58 (240)
T PRK06101 2 TAVLITGAT-SGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDH 58 (240)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCH
Confidence 356766654 444444 445576 899999987655443321 1 2578888998774
No 476
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=58.59 E-value=31 Score=31.44 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHH----HHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDA----INLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~----i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++++||-.| |+|.++..|+++ |. +|+++|..... +.............+++++.+|+.+.
T Consensus 13 ~~~~~vlVtG-atGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (348)
T PRK15181 13 LAPKRWLITG-VAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF 81 (348)
T ss_pred ccCCEEEEEC-CccHHHHHHHHHHHHCCC-EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 3567888886 677777666654 55 89999974322 11111111111123588999999873
No 477
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.42 E-value=45 Score=28.87 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=35.6
Q ss_pred CCCEEEEEcc-CcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGT-GNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGc-G~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+++.+|-.|+ |++.++.. |+++|. +|+.+..+....+.+++.....+ ....+++|+.+.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~ 68 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELD--SELVFRCDVASD 68 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccC--CceEEECCCCCH
Confidence 5778999997 34444444 445577 88887665544444444433323 345678888873
No 478
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.35 E-value=20 Score=33.86 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=53.5
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.++.+|+|++|-.|.-+..++.. ...++.|+|..+.-.+..++.+...|...+....+|+...
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 45789999999999988888765 3448999999999999999988888887788889998884
No 479
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=58.26 E-value=16 Score=32.70 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
++.+||-+||| .|.++..+++. |...|+++|.++..++.++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 46689988876 46667777765 77568888998877776654
No 480
>PRK07877 hypothetical protein; Provisional
Probab=58.22 E-value=35 Score=34.97 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=25.4
Q ss_pred CCCEEEEEccCcChh-HHHHHhcCC-CcEEEEeC
Q 025035 164 SSWSVLDIGTGNGLL-LQELSKQGF-SDLTGVDY 195 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~-~~~la~~g~-~~V~giD~ 195 (259)
.+.+|+-+|||-|.. +..|++.|. .+++.+|.
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~ 139 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADF 139 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcC
Confidence 467999999998884 666677784 78998884
No 481
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=58.18 E-value=66 Score=27.53 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
.+++++|-.|++.|. ++..|+++|. +|+.+.. ++..++...+..+..+ .++.++..|+.+.
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 69 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAG-GEAIAVKGDVTVE 69 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcC-CeEEEEEecCCCH
Confidence 357788888876654 3444555676 6766655 3444454444444433 2577888898873
No 482
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=58.10 E-value=29 Score=31.48 Aligned_cols=58 Identities=21% Similarity=0.057 Sum_probs=34.3
Q ss_pred CCCEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++++||-.| |+|.++..+++ +|. +|++++.++........... .+ .++.++.+|+.+.
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~ 64 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLN-LA-KKIEDHFGDIRDA 64 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHh-hc-CCceEEEccCCCH
Confidence 467888887 55665555554 466 89999976543222211111 11 2577888888773
No 483
>PRK06940 short chain dehydrogenase; Provisional
Probab=57.89 E-value=51 Score=28.80 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=36.8
Q ss_pred CEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+.+|--|+ |.++..++++ |. +|++++.++..++...+..+..+. ++.++.+|+.+.
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~ 61 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGK-KVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSR 61 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCH
Confidence 35565564 4566666654 65 899999988766655554444342 678888998774
No 484
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=57.84 E-value=28 Score=30.86 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCC
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQ 225 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~ 225 (259)
+++||-.| |+|.++..++++ |. +|++++.+..............+ ..+++++.+|+.+.
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 67 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEE 67 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCc
Confidence 56788776 467766666554 66 89888876533222222111112 13689999999874
No 485
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=57.14 E-value=53 Score=27.95 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=33.0
Q ss_pred EEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 167 ~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
+||-.|++.|. ++..|+++|. +|++++.++..++...... + .++.++.+|+.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~ 58 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDEL---G-DNLYIAQLDVRNR 58 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---c-cceEEEEecCCCH
Confidence 46666644433 2333444576 8999999986655443322 2 2578888888763
No 486
>PRK06482 short chain dehydrogenase; Provisional
Probab=57.07 E-value=47 Score=28.76 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=35.6
Q ss_pred CEEEEEccCcChhHHHH----HhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035 166 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225 (259)
Q Consensus 166 ~~VLDiGcG~G~~~~~l----a~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~ 225 (259)
++||-.|+ +|.++..+ +++|. +|++++.++..++..++.. + .++.++.+|+.+.
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~ 60 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARY---G-DRLWVLQLDVTDS 60 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---c-CceEEEEccCCCH
Confidence 46887776 45554444 44566 8999999887665544422 2 2588889998874
No 487
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.04 E-value=10 Score=35.49 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=33.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhH
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLAN 208 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~ 208 (259)
..+++|||+|.|.|..+.++..- ....++.++.|+..-++....+.
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~ 159 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAE 159 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHh
Confidence 46788999999999988876664 22378889999855555544443
No 488
>PRK14851 hypothetical protein; Provisional
Probab=56.98 E-value=53 Score=33.42 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCCEEEEEccC-cCh-hHHHHHhcCCCcEEEEe
Q 025035 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVD 194 (259)
Q Consensus 164 ~~~~VLDiGcG-~G~-~~~~la~~g~~~V~giD 194 (259)
++.+|+-+||| .|. .+..|++.|..+++.+|
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD 74 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIAD 74 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEc
Confidence 47899999999 555 57778888988898888
No 489
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=56.74 E-value=25 Score=32.17 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
..++.+||-+|+| .|..+..+++. |..+|++++.++.-++.+++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3567899999864 33344555555 65579999999887777754
No 490
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=56.38 E-value=19 Score=33.32 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=38.5
Q ss_pred CCEEEEEccCcCh----hHHHHHhcCCCcEEEEeC----CHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035 165 SWSVLDIGTGNGL----LLQELSKQGFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVMNISVQI 226 (259)
Q Consensus 165 ~~~VLDiGcG~G~----~~~~la~~g~~~V~giD~----S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~ 226 (259)
+.+||-.| |.|. ..+.|.++|. .|+++|. ....+..+++.... -..|.|+.+|+.+..
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy-~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~ 67 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGY-GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAE 67 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCC-cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHH
Confidence 45788776 5555 3566777788 8999995 33444444444332 136999999999844
No 491
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=56.30 E-value=27 Score=30.17 Aligned_cols=44 Identities=34% Similarity=0.436 Sum_probs=32.1
Q ss_pred CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (259)
Q Consensus 163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~ 206 (259)
.++.+||-.|||. |..+..+++. |..+|++++.++..++.+++.
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 4578888888764 6666666665 653499999998887776653
No 492
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.08 E-value=24 Score=36.04 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=33.6
Q ss_pred CEEEEEccCc--ChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035 166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLA 207 (259)
Q Consensus 166 ~~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~ 207 (259)
.+|.-||+|+ ..++..++..|. +|+.+|.+++.++.+++++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~ 356 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEA 356 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHH
Confidence 5799999996 446677777787 9999999999998877654
No 493
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=56.05 E-value=53 Score=33.27 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=39.8
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ 225 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~ 225 (259)
.+++||-.|++.|. ++..|+++|. +|++++.+...++...+.... .+..++.++++|+.+.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~ 477 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDE 477 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCH
Confidence 46788888775444 2344455576 899999998776665544432 2323577888998873
No 494
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=55.95 E-value=23 Score=33.41 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=37.1
Q ss_pred CCCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035 164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224 (259)
Q Consensus 164 ~~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~ 224 (259)
...+|+=+|| |.++..+++. |. .|+.+|.+++.++..++.. .++.++.+|..+
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~ 286 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL-----PNTLVLHGDGTD 286 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC-----CCCeEEECCCCC
Confidence 3567888777 5555555543 55 8999999999888776632 246678888865
No 495
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=55.63 E-value=23 Score=31.36 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=28.9
Q ss_pred EEEEEccCc--ChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035 167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 167 ~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~~~i~~a~~ 205 (259)
+|.=||+|. |.++..|.+.|. +|+++|.++..++.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 466788874 556677777776 89999999988877654
No 496
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=55.57 E-value=23 Score=31.66 Aligned_cols=42 Identities=21% Similarity=0.458 Sum_probs=32.0
Q ss_pred CCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
++.+||-.|||. |..+..+++. |..+|++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 578899888875 6677767765 65579999999888776654
No 497
>PLN02827 Alcohol dehydrogenase-like
Probab=55.51 E-value=26 Score=32.48 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=30.6
Q ss_pred CCCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (259)
Q Consensus 162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~ 205 (259)
..++.+||-+|+| -|..+..+++. |...|+++|.++.-.+.+++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 3568899999875 34444555554 76569999998887777654
No 498
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=55.24 E-value=53 Score=29.43 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCH
Q 025035 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE 197 (259)
Q Consensus 164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~ 197 (259)
+++++|-+|+| |. ++..|++.|..+|+.++.++
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999997 54 23334456876799999985
No 499
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=55.20 E-value=17 Score=35.84 Aligned_cols=72 Identities=18% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCEEEEEccCcChhHHHHHhc-----CCCcEEEEeCCHHHHHHHHHHh-HhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035 165 SWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVMNISVQIL---TYFICKSE 235 (259)
Q Consensus 165 ~~~VLDiGcG~G~~~~~la~~-----g~~~V~giD~S~~~i~~a~~~~-~~~~l~~i~~i~~D~~~~~~---~fdvv~~~ 235 (259)
...|+-+|.|-|-+.....+. ..-++++|+.++.++-..+..- ...+ .+++.+..|++.... ..|++.++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-NRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-CeeEEEeccccccCCchhhccchHHH
Confidence 456899999999876655543 1228999999999987776532 2122 369999999999644 56776666
Q ss_pred cc
Q 025035 236 RN 237 (259)
Q Consensus 236 v~ 237 (259)
++
T Consensus 447 LL 448 (649)
T KOG0822|consen 447 LL 448 (649)
T ss_pred hh
Confidence 54
No 500
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=55.17 E-value=15 Score=33.64 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=49.4
Q ss_pred CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccC
Q 025035 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISV 224 (259)
Q Consensus 163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~ 224 (259)
..+++||-||.|-|...+..+++ ...++.-+|+.+..++..++..... |. +++..+.+|...
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~ 186 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL 186 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH
Confidence 45789999999999999999988 3348999999999999998866443 22 368888887665
Done!