Query 025038
Match_columns 259
No_of_seqs 194 out of 1004
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 100.0 7.4E-46 1.6E-50 332.9 20.3 232 1-246 1-257 (310)
2 PF03105 SPX: SPX domain; Int 100.0 5.6E-34 1.2E-38 252.7 15.8 157 1-160 1-274 (275)
3 KOG1162 Predicted small molecu 100.0 2.8E-33 6E-38 272.1 20.7 186 1-190 1-206 (617)
4 COG5036 SPX domain-containing 100.0 1E-27 2.2E-32 221.0 14.9 168 1-190 1-168 (509)
5 COG5408 SPX domain-containing 99.8 7E-18 1.5E-22 151.9 15.0 53 109-161 240-292 (296)
6 PF10146 zf-C4H2: Zinc finger- 76.7 31 0.00068 30.6 10.1 93 16-132 4-99 (230)
7 PF10112 Halogen_Hydrol: 5-bro 67.1 79 0.0017 26.9 11.1 77 110-189 111-187 (199)
8 PF10168 Nup88: Nuclear pore c 63.2 1.6E+02 0.0034 30.6 13.1 123 54-184 581-714 (717)
9 KOG4327 mRNA splicing protein 60.2 4.4 9.6E-05 35.1 1.1 15 245-259 166-180 (218)
10 PF07889 DUF1664: Protein of u 59.1 94 0.002 25.0 9.1 72 47-127 38-109 (126)
11 KOG4460 Nuclear pore complex, 52.3 2.7E+02 0.0058 28.2 15.7 113 14-146 567-687 (741)
12 PF01544 CorA: CorA-like Mg2+ 40.9 2.5E+02 0.0053 24.5 9.6 64 61-142 116-179 (292)
13 KOG2070 Guanine nucleotide exc 40.0 2.4E+02 0.0053 28.1 9.4 52 133-189 197-261 (661)
14 PF05600 DUF773: Protein of un 31.9 5.2E+02 0.011 25.7 11.7 58 106-164 130-187 (507)
15 KOG1281 Na+/dicarboxylate, Na+ 29.1 23 0.0005 35.6 0.7 43 120-162 8-52 (586)
16 PF07352 Phage_Mu_Gam: Bacteri 28.7 2.2E+02 0.0048 23.1 6.4 42 49-90 18-59 (149)
17 PF09763 Sec3_C: Exocyst compl 27.1 6.9E+02 0.015 25.6 16.4 127 50-187 3-135 (701)
18 PF10498 IFT57: Intra-flagella 26.5 5.6E+02 0.012 24.3 12.4 21 16-36 216-236 (359)
19 PF15389 DUF4612: Domain of un 25.6 57 0.0012 25.9 2.2 21 46-66 87-107 (115)
20 PF13758 Prefoldin_3: Prefoldi 25.4 2.5E+02 0.0055 21.6 5.7 24 14-37 3-26 (99)
21 KOG4466 Component of histone d 25.3 5.2E+02 0.011 23.8 8.5 42 50-91 15-56 (291)
22 smart00806 AIP3 Actin interact 23.8 5E+02 0.011 25.3 8.6 95 73-183 220-317 (426)
23 PF01025 GrpE: GrpE; InterPro 23.3 4E+02 0.0087 21.5 9.8 61 54-129 20-80 (165)
24 PF07067 DUF1340: Protein of u 23.3 5E+02 0.011 22.6 8.0 70 106-189 146-215 (236)
25 PF13170 DUF4003: Protein of u 23.0 5.9E+02 0.013 23.3 10.3 51 135-189 123-173 (297)
26 PF02954 HTH_8: Bacterial regu 22.5 1.2E+02 0.0025 19.1 2.9 35 110-144 8-42 (42)
27 COG5127 Vacuolar H+-ATPase V1 21.9 65 0.0014 30.0 2.1 26 219-244 26-51 (383)
28 PF10557 Cullin_Nedd8: Cullin 21.7 1.4E+02 0.003 20.9 3.4 47 135-184 11-57 (68)
29 COG4026 Uncharacterized protei 21.6 5.6E+02 0.012 23.0 7.7 13 22-34 102-114 (290)
30 PF06013 WXG100: Proteins of 1 21.2 2.8E+02 0.0061 18.9 10.4 65 67-135 15-79 (86)
31 PF09763 Sec3_C: Exocyst compl 21.2 5.9E+02 0.013 26.0 9.2 58 126-187 621-689 (701)
32 PF05300 DUF737: Protein of un 20.6 1.9E+02 0.0041 24.9 4.6 29 55-83 140-168 (187)
33 PF06631 DUF1154: Protein of u 20.2 73 0.0016 21.2 1.5 16 135-150 18-33 (47)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-46 Score=332.90 Aligned_cols=232 Identities=41% Similarity=0.574 Sum_probs=192.5
Q ss_pred CCchHHHhHhHhhhCcchhhhcCChHhHHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025038 1 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSHRHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRK 80 (259)
Q Consensus 1 MKFGk~L~~~i~~~vpeW~~~Yi~Yk~LKk~IK~~~~~~~~~~~~~~~~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~ 80 (259)
|||||.|++. .+|||+++||||+.|||+||+....... .+.....+.+|+++|+.||+||+.||.++++++.+|++
T Consensus 1 MkFGk~L~~~---~l~ew~~~yinYk~LKK~lK~~~~~~~~-~~~~~~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~ 76 (310)
T KOG1161|consen 1 MKFGKYLKEE---LLPEWKDKYINYKELKKLLKQYSIQTAD-SSPDSRDESDFVRLLDAELEKVNGFQLEKESELIIRLK 76 (310)
T ss_pred CchhHHHHHh---hhhhHhhhhcCHHHHHHHHHHhcccccc-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999964 6999999999999999999997543210 11112278999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccchHHHHHHh
Q 025038 81 ELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKV 160 (259)
Q Consensus 81 ~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v 160 (259)
.|++++.. . .+ .+.+.+++..+++++.+|++||.+|.+|++||+|||+||||||||+||..++..|..+|
T Consensus 77 ~L~e~~~~--~---~~-----~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l 146 (310)
T KOG1161|consen 77 ELEEKIDA--L---SL-----EPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRL 146 (310)
T ss_pred HHHHHhhc--c---cc-----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHH
Confidence 99999976 1 11 11257788999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHcCCChhhhc-----------------------CCCccccccccchHhh--HHHHH
Q 025038 161 LKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIG-----------------------RREPTIRVTGEGVFRN--TVAAL 215 (259)
Q Consensus 161 ~~~pF~~~~~l~~Li~~ve~l~~~~f~~~~~~~~-----------------------~~~~~~~~~~~~~~~~--~~~a~ 215 (259)
..+|||+++.++.|+.+|+.+|+.+++.+...+. .............+.+ |++|+
T Consensus 147 ~~~Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~~~s~~~~~~~~~~~t~k~wvH~~n~~e~k~~~~~~lpvL~~~~~~d~ai 226 (310)
T KOG1161|consen 147 LHQPFFTTEQLFRLVYEISILLDLLRPSNRNGESKESNDSDFVRRTTKYWVHEDNVNEVKTYILRHLPVLVFNSPTDAAI 226 (310)
T ss_pred HhCCCchhhhHHHHHHHHHHHHHHhcccccccccccccchhhhhhccccccCccccchhHHHHhccCcceecCCcchHHH
Confidence 9999999999999999999999999998733110 0011122223334423 79999
Q ss_pred HHHHHhhhCCcccccccCCCCCCCCchhhhh
Q 025038 216 LTMQEIRSGSSTRSQFSLPPLDLSDSEFIRT 246 (259)
Q Consensus 216 ~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~ 246 (259)
.|+.+.+.||++|+.||+||+..+..++.|.
T Consensus 227 t~~~~~n~~~~~y~~~l~~~~~a~~~rl~w~ 257 (310)
T KOG1161|consen 227 TTLYFDNSGSDLYSQFLLKSLLAEALRLRWY 257 (310)
T ss_pred HHHHHhccchHHHHHHhcccccchhhhhhhh
Confidence 9999999999999999999999888844443
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=5.6e-34 Score=252.68 Aligned_cols=157 Identities=36% Similarity=0.618 Sum_probs=125.8
Q ss_pred CCchHHHhHhHhhhCcchhhhcCChHhHHHHHhhhcCCCCC-------------------------------C-------
Q 025038 1 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPP-------------------------------S------- 42 (259)
Q Consensus 1 MKFGk~L~~~i~~~vpeW~~~Yi~Yk~LKk~IK~~~~~~~~-------------------------------~------- 42 (259)
||||+.|+.+ ++|||+++||||+.|||+||.+...... .
T Consensus 1 MKFgk~L~~~---~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PF03105_consen 1 MKFGKQLQEN---AVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTS 77 (275)
T ss_pred CCchHHHHHh---cCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccccccccccccccccccc
Confidence 9999999996 5999999999999999999998543110 0
Q ss_pred C--------CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------C------------
Q 025038 43 H--------RHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGP------N------------ 96 (259)
Q Consensus 43 ~--------~~~~~~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~------~------------ 96 (259)
+ ......+..|+..|+.||+||+.||..++.++..+++.|+.++..+...... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (275)
T PF03105_consen 78 PSSSNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYNWNQSSQLSSSSNI 157 (275)
T ss_pred ccccccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhcccccc
Confidence 0 0123578999999999999999999999999999999999999876532100 0
Q ss_pred ---------CCC----CC-------------C---------------------------cccHHHHHHHHHHHHHHHHHH
Q 025038 97 ---------GAR----PS-------------E---------------------------TNCKEDMAEIRKDIVNFHGEM 123 (259)
Q Consensus 97 ---------~s~----~s-------------~---------------------------~~~~~~~~~l~~~l~el~~el 123 (259)
++. .. . .........++.+|.++|.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~y~~l 237 (275)
T PF03105_consen 158 FSSSSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLSSSQKSLKKARKQLKKAFIELYREL 237 (275)
T ss_pred ccCccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 000 00 0 001234567899999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhcCccchHHHHHHh
Q 025038 124 VLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKV 160 (259)
Q Consensus 124 ~~L~~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v 160 (259)
.+|++|+.||+|||+||||||||+||..++..||+.|
T Consensus 238 ~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 238 ELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 9999999999999999999999999999999999765
No 3
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-33 Score=272.11 Aligned_cols=186 Identities=31% Similarity=0.467 Sum_probs=159.4
Q ss_pred CCchHHHhHhHhhhCcchhhhcCChHhHHHHHhhhcCCCCCCC--------CchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025038 1 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEKE 72 (259)
Q Consensus 1 MKFGk~L~~~i~~~vpeW~~~Yi~Yk~LKk~IK~~~~~~~~~~--------~~~~~~e~~F~~~L~~EL~KVn~Fy~~ke 72 (259)
|||||.|..|+ +|||++.|+||+.||+.||.+....++.+ +...+.+..|++.||.|++|||.||.+|+
T Consensus 1 MKFgk~~~~q~---~pEW~~ay~dY~~lK~~l~~i~~~~~~~~~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~ 77 (617)
T KOG1162|consen 1 MKFGKELESQL---VPEWRQAYIDYKYLKKLLKEIIENKPSSEETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKV 77 (617)
T ss_pred CcchHHHHHhc---CHHHHHHhhhHHHHHHHHHHHHhcCCCcCccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 99999999999999999999877554311 11356789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC-CCCC-----CC-c-----ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025038 73 EDFIIKRKELQQRLQRVIDTWGPN-GARP-----SE-T-----NCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKI 140 (259)
Q Consensus 73 ~el~~rl~~L~~~i~~~~~~~~~~-~s~~-----s~-~-----~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KI 140 (259)
+|+.++.+.|++|++.+.+.+.+. .+.+ ++ . .....-++++.++.|+|..|.+|++|+.||.+||+||
T Consensus 78 ~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI 157 (617)
T KOG1162|consen 78 KEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKI 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886644321 1110 00 0 0133446789999999999999999999999999999
Q ss_pred HHhhhhhcCccchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHcCCCh
Q 025038 141 LKKYDKRTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDE 190 (259)
Q Consensus 141 LKK~DK~tg~~l~~~f~~~v~~~pF~~~~~l~~Li~~ve~l~~~~f~~~~ 190 (259)
+|||||.++.+. .+|++.|..++|.+++.++.|+.+||++|.++|++|+
T Consensus 158 ~KKyDK~~~~~~-~~~~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~fan~n 206 (617)
T KOG1162|consen 158 LKKYDKITSRDA-KRYVKMVDKSYFTSSDEITRLMLEVEETFTKHFANGN 206 (617)
T ss_pred HHHHHhhcccch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999 8899999999999999999999999999999999983
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-27 Score=220.96 Aligned_cols=168 Identities=26% Similarity=0.440 Sum_probs=143.6
Q ss_pred CCchHHHhHhHhhhCcchhhhcCChHhHHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025038 1 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSHRHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRK 80 (259)
Q Consensus 1 MKFGk~L~~~i~~~vpeW~~~Yi~Yk~LKk~IK~~~~~~~~~~~~~~~~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~ 80 (259)
|+||+.|.+.+ +|+|++.||||..||++||.-.. +.+|.+.+|.+|++.|+.||+||..|...+..++.+|+.
T Consensus 1 M~Fg~~L~~~l---y~p~k~~YinYe~LK~~lK~~~~----~~~w~e~dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~ 73 (509)
T COG5036 1 MRFGKKLKNNL---YPPYKYSYINYENLKKLLKESEE----EGSWSESDESDFVEELDKELEKVYGFQLSKYSEVMERLR 73 (509)
T ss_pred CchhHHHHhcc---CcccccccCCHHHHHHHHhhccc----cCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999976 99999999999999999998322 224778899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccchHHHHHHh
Q 025038 81 ELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKV 160 (259)
Q Consensus 81 ~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v 160 (259)
.|+++....+... ++ ....+.+.+...+.+.|.+|..||+|||.||+|||||.+|..++.-|--++
T Consensus 74 ~leeq~~~~i~~~--ds------------~~~~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvrL 139 (509)
T COG5036 74 TLEEQTDEAIQEL--DS------------DNFPKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVRL 139 (509)
T ss_pred HHHhccHHHhhcc--cC------------CcchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHHh
Confidence 9999988544321 00 001124555555889999999999999999999999999999998888888
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHcCCCh
Q 025038 161 LKQPFFTTEVVSKLIKECESTIAQVFPVDE 190 (259)
Q Consensus 161 ~~~pF~~~~~l~~Li~~ve~l~~~~f~~~~ 190 (259)
...||+ ++.++.|+.++..+|.-+...+.
T Consensus 140 k~~p~~-se~yd~Ll~kis~LY~~lR~~~~ 168 (509)
T COG5036 140 KAKPFF-SEQYDPLLYKISSLYNILRSSLS 168 (509)
T ss_pred ccCCcc-hhhhcHHHHHHHHHHHHHHhcCC
Confidence 999995 88899999999999999998874
No 5
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.77 E-value=7e-18 Score=151.86 Aligned_cols=53 Identities=30% Similarity=0.501 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccchHHHHHHhh
Q 025038 109 MAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKVL 161 (259)
Q Consensus 109 ~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v~ 161 (259)
...+++.++++|..+..|+.|++||+|||+||+|||||.++.+++..|++...
T Consensus 240 R~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~~ 292 (296)
T COG5408 240 RSLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRSV 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 35578999999999999999999999999999999999999999999997653
No 6
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.68 E-value=31 Score=30.59 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=58.2
Q ss_pred cchhhhcCChHhHHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q 025038 16 PGWRDKFLSYKRLKKLVNLISSSPPPSHRHCVEAEADFVYLLNHEIDKFNAFFMEKEEDF---IIKRKELQQRLQRVIDT 92 (259)
Q Consensus 16 peW~~~Yi~Yk~LKk~IK~~~~~~~~~~~~~~~~e~~F~~~L~~EL~KVn~Fy~~ke~el---~~rl~~L~~~i~~~~~~ 92 (259)
.+-+.+=..|..+|..|..-... .+.+..|+..+..|++.+..=.....+++ ..-++.|+.-+...
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~--------~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa--- 72 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVES--------LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA--- 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34455556777777777654331 34467888888888887775444444443 44445555544432
Q ss_pred cCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 025038 93 WGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNI 132 (259)
Q Consensus 93 ~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~L 132 (259)
..+..+.+..+..+|+++.-|+..++-
T Consensus 73 -------------~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 73 -------------ESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888888888888876553
No 7
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=67.11 E-value=79 Score=26.89 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q 025038 110 AEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVD 189 (259)
Q Consensus 110 ~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v~~~pF~~~~~l~~Li~~ve~l~~~~f~~~ 189 (259)
+.+.+.+.+-=..+...++|..-=.-+..|++.||........+..-+...+.. ....|+.+....+..|++++.+.
T Consensus 111 ~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e---~~~~L~~l~~~f~~~~~~l~~~d 187 (199)
T PF10112_consen 111 RRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSEEIKQSLEE---IEETLDTLNQAFEKDLDKLLEDD 187 (199)
T ss_pred HHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCChhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444455556667788888888889999999999887665444333222111 24567788888888888887654
No 8
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.18 E-value=1.6e+02 Score=30.62 Aligned_cols=123 Identities=19% Similarity=0.297 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--C--CcccHHHHHHHHHHHHHHHHHHHHH
Q 025038 54 VYLLNHEIDKFNA---FFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARP--S--ETNCKEDMAEIRKDIVNFHGEMVLL 126 (259)
Q Consensus 54 ~~~L~~EL~KVn~---Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~--s--~~~~~~~~~~l~~~l~el~~el~~L 126 (259)
...+..+++.+.. --.++.+++..+.+.|.++++.+...... ..| + +....+++..+...+..+-..+..+
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~--~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS--QLPVLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555532 22456666777777777777766543211 111 1 1112334444555554444444444
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcC-ccchHHHHH---HhhcCCCCCHHHHHHHHHHHHHHHHH
Q 025038 127 VNYSNINYTGLAKILKKYDKRTG-GLLRLLFIQ---KVLKQPFFTTEVVSKLIKECESTIAQ 184 (259)
Q Consensus 127 ~~y~~LN~taf~KILKK~DK~tg-~~l~~~f~~---~v~~~pF~~~~~l~~Li~~ve~l~~~ 184 (259)
+. .+|+.. ++|-++-+.... ..+...-++ .++.+ .++.|..+|+++..|-..
T Consensus 659 k~--k~~~Q~-~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~---~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 659 KK--KLDYQQ-RQIESQKSPKKKSIVLSESQKRTIKEILKQ---QGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HH--HHHHHH-HHHhccccccCCCccCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 32 222222 233333332222 123333222 22211 256788888888776554
No 9
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=60.18 E-value=4.4 Score=35.07 Aligned_cols=15 Identities=33% Similarity=0.726 Sum_probs=13.2
Q ss_pred hhccCCCCCCCCCCC
Q 025038 245 RTLQMNSPPIPIPIL 259 (259)
Q Consensus 245 ~~~~~~~~~~~~~~~ 259 (259)
.+|.||.||+|+||.
T Consensus 166 ~sfmpppPP~pp~i~ 180 (218)
T KOG4327|consen 166 NSFMPPPPPMPPPIC 180 (218)
T ss_pred cccCCCCCCCCcccC
Confidence 688999999999983
No 10
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.14 E-value=94 Score=25.04 Aligned_cols=72 Identities=10% Similarity=0.229 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 025038 47 VEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLL 126 (259)
Q Consensus 47 ~~~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L 126 (259)
...-.++...+..+|+.|.+=....-.++..|++.|..+++...+... ...+++..++..+.++..++..+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~---------~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISK---------QIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHH
Confidence 345678899999999999999999889999999998888877544210 02344555666666666665555
Q ss_pred h
Q 025038 127 V 127 (259)
Q Consensus 127 ~ 127 (259)
.
T Consensus 109 ~ 109 (126)
T PF07889_consen 109 Q 109 (126)
T ss_pred H
Confidence 4
No 11
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.30 E-value=2.7e+02 Score=28.23 Aligned_cols=113 Identities=13% Similarity=0.248 Sum_probs=65.6
Q ss_pred hCcchhhhcCChHhHH-----HHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 025038 14 TLPGWRDKFLSYKRLK-----KLVNLISSSPPPSHRHCVEAEADFVYLLNHEIDKFN---AFFMEKEEDFIIKRKELQQR 85 (259)
Q Consensus 14 ~vpeW~~~Yi~Yk~LK-----k~IK~~~~~~~~~~~~~~~~e~~F~~~L~~EL~KVn---~Fy~~ke~el~~rl~~L~~~ 85 (259)
++.-.+++||-|-+|= +.++.+... .+..-.=...++.|.++|. .|..+..+|+..+.+.|...
T Consensus 567 a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~--------k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~ 638 (741)
T KOG4460|consen 567 ATQVFREQYILKQDLVKEEIQRHVKLLCDQ--------KKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNR 638 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4667899999998873 223333221 1111222445666666665 67778888888888888888
Q ss_pred HHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 025038 86 LQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK 146 (259)
Q Consensus 86 i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK 146 (259)
..++... ++.+.|. ....-+..++++.-+..++..|. .|+.-.-+|+||
T Consensus 639 ~~~L~~~--~~~~lp~---l~~AErdFk~Elq~~~~~~~~L~-------~~iET~~~~~~K 687 (741)
T KOG4460|consen 639 MKKLLHS--FHSELPV---LSDAERDFKKELQLIPDQLRHLG-------NAIETVTMKKDK 687 (741)
T ss_pred HHHHHhc--ccccCCc---chhHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHH
Confidence 8877653 2222221 22223445566666666666666 355555566666
No 12
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=40.90 E-value=2.5e+02 Score=24.53 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025038 61 IDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKI 140 (259)
Q Consensus 61 L~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KI 140 (259)
++.+..-|....+++..+++.++..+.... . ......+.++-+++..+++...-+...+.++
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~~--------------~----~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~ 177 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDRP--------------S----NELLRELFDLRRELSRLRRSLSPLREVLQRL 177 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHTT--------------T----HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc--------------c----hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555566666677777777777772110 1 1223445566677778888888888888777
Q ss_pred HH
Q 025038 141 LK 142 (259)
Q Consensus 141 LK 142 (259)
+.
T Consensus 178 ~~ 179 (292)
T PF01544_consen 178 LR 179 (292)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 13
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=39.95 E-value=2.4e+02 Score=28.13 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhhcCccchHHHHHH-------------hhcCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q 025038 133 NYTGLAKILKKYDKRTGGLLRLLFIQK-------------VLKQPFFTTEVVSKLIKECESTIAQVFPVD 189 (259)
Q Consensus 133 N~taf~KILKK~DK~tg~~l~~~f~~~-------------v~~~pF~~~~~l~~Li~~ve~l~~~~f~~~ 189 (259)
|+-.-+-||+||.+-. ..||+. =+..||-.-+.+..|+.++|.+.....++.
T Consensus 197 nHP~AV~VL~k~~dEL-----ek~me~Qgasspg~lvLttgLSkPfrrldkY~~lLQELERhme~~HpDr 261 (661)
T KOG2070|consen 197 NHPSAVNVLTKHSDEL-----EKFMETQGASSPGILVLTTGLSKPFRRLDKYPTLLQELERHMEDYHPDR 261 (661)
T ss_pred cCchhhhHHHHhHHHH-----HHHHHhcCCCCCCeEEEecccchHHHHHHHHHHHHHHHHHhccccCCch
Confidence 4444567788776543 223321 147789888999999999999887777653
No 14
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=31.90 E-value=5.2e+02 Score=25.66 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccchHHHHHHhhcCC
Q 025038 106 KEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKVLKQP 164 (259)
Q Consensus 106 ~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v~~~p 164 (259)
...+.+..+.+.++.+-...+.+=.......|.+-||+|. ..|.+++..+++.+..-|
T Consensus 130 kKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lG-I~G~nir~ELl~l~~~LP 187 (507)
T PF05600_consen 130 KKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLG-IKGENIREELLELVKELP 187 (507)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CccchhHHHHHHHHHhhH
Confidence 4556667777778888777888888888889999999993 557778888777665444
No 15
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=29.06 E-value=23 Score=35.61 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=34.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccc--hHHHHHHhhc
Q 025038 120 HGEMVLLVNYSNINYTGLAKILKKYDKRTGGLL--RLLFIQKVLK 162 (259)
Q Consensus 120 ~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l--~~~f~~~v~~ 162 (259)
...+..+++|..+|++++.|+.||+||..+.+. +--|...|..
T Consensus 8 ~~~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~e~~c~y~~~vm~ 52 (586)
T KOG1281|consen 8 VNTLLQYRSLLVLNRTPLLLLPKKLDKLLHSSEEARCAYVILVMA 52 (586)
T ss_pred HHHHHHhhhhheeehhhhhhcchhhhhhcCCcHHHHHHHHHHHHH
Confidence 337889999999999999999999999998874 3345544443
No 16
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=28.69 E-value=2.2e+02 Score=23.06 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025038 49 AEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVI 90 (259)
Q Consensus 49 ~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~ 90 (259)
...+.-..++.+++.|...|......+..+++.|+..+..+.
T Consensus 18 ~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~ 59 (149)
T PF07352_consen 18 EIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYA 59 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777766666543
No 17
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=27.13 E-value=6.9e+02 Score=25.56 Aligned_cols=127 Identities=9% Similarity=0.065 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHh--
Q 025038 50 EADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLV-- 127 (259)
Q Consensus 50 e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~-- 127 (259)
-+.|.+.|..||.+++.=.....-+...+.+.|...+..+..... .-...+......|..+..+|..++
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d---------~le~~l~~y~~~L~~~~~di~~IE~q 73 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECD---------ELESWLSLYDVELNSVRDDIEYIESQ 73 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356888888888887765555555555555555555544322100 000111112222223333332222
Q ss_pred ----hHHHHHHHHHHHHHHhhhhhcCccchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHcC
Q 025038 128 ----NYSNINYTGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFP 187 (259)
Q Consensus 128 ----~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v~~~pF~~~~~l~~Li~~ve~l~~~~f~ 187 (259)
.=..-|...+.+-|...-... .+....+..+...+|-+.+.|..+...+..+|..+-.
T Consensus 74 n~~Lqvq~~N~k~L~~eL~~Ll~~l--~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~ 135 (701)
T PF09763_consen 74 NNGLQVQSANQKLLLNELENLLDTL--SIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKA 135 (701)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 234556666666555554433 3566777788889998788899999999999987776
No 18
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.53 E-value=5.6e+02 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=14.8
Q ss_pred cchhhhcCChHhHHHHHhhhc
Q 025038 16 PGWRDKFLSYKRLKKLVNLIS 36 (259)
Q Consensus 16 peW~~~Yi~Yk~LKk~IK~~~ 36 (259)
.+||.|+=.=+.+++.|....
T Consensus 216 kDWR~hleqm~~~~~~I~~~~ 236 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESAL 236 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 578877777777777776654
No 19
>PF15389 DUF4612: Domain of unknown function (DUF4612)
Probab=25.60 E-value=57 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 025038 46 CVEAEADFVYLLNHEIDKFNA 66 (259)
Q Consensus 46 ~~~~e~~F~~~L~~EL~KVn~ 66 (259)
.+....+||++||.-|+|-.+
T Consensus 87 iS~SQqdFFRMLDeKIekG~D 107 (115)
T PF15389_consen 87 ISESQQDFFRMLDEKIEKGRD 107 (115)
T ss_pred hhHHHHHHHHHHHHHHHcCCC
Confidence 356789999999999987443
No 20
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=25.45 E-value=2.5e+02 Score=21.65 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.0
Q ss_pred hCcchhhhcCChHhHHHHHhhhcC
Q 025038 14 TLPGWRDKFLSYKRLKKLVNLISS 37 (259)
Q Consensus 14 ~vpeW~~~Yi~Yk~LKk~IK~~~~ 37 (259)
++-.|+-.+..|..||..|..+..
T Consensus 3 sL~hWq~w~aEYe~LKEEi~~l~~ 26 (99)
T PF13758_consen 3 SLYHWQTWEAEYEGLKEEIEALPE 26 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Confidence 356699999999999999999855
No 21
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.26 E-value=5.2e+02 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025038 50 EADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVID 91 (259)
Q Consensus 50 e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~ 91 (259)
+..|+...+.=.+--+.|+..++..+..|+..|+.+++.+.+
T Consensus 15 drrr~~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~ 56 (291)
T KOG4466|consen 15 DRRRANEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQ 56 (291)
T ss_pred HHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555544444444579999999999999999999998754
No 22
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=23.85 E-value=5e+02 Score=25.29 Aligned_cols=95 Identities=21% Similarity=0.373 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccc
Q 025038 73 EDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLL 152 (259)
Q Consensus 73 ~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l 152 (259)
+.+..+.+.|++-++.+.......|..| ....+..+.+.+...-.+|..++.|..-=.---.||--+
T Consensus 220 d~lltkVDDLQD~vE~LRkDV~~RgVRp----~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~--------- 286 (426)
T smart00806 220 DSLLTKVDDLQDIIEALRKDVAQRGVRP----SKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEA--------- 286 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH---------
Confidence 3445555666666665543211122333 467888889999999999999998876544333333211
Q ss_pred hHHHHHHh-hcCCCCC--HHHHHHHHHHHHHHHH
Q 025038 153 RLLFIQKV-LKQPFFT--TEVVSKLIKECESTIA 183 (259)
Q Consensus 153 ~~~f~~~v-~~~pF~~--~~~l~~Li~~ve~l~~ 183 (259)
=++.| ..+-|++ .+.+..|..+++.+..
T Consensus 287 ---EL~~VcEEqqfL~lQedL~~DL~dDL~ka~e 317 (426)
T smart00806 287 ---ELDKVCEEQQFLTLQEDLIADLKEDLEKAEE 317 (426)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233 3566664 3455555555555443
No 23
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.35 E-value=4e+02 Score=21.53 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhH
Q 025038 54 VYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNY 129 (259)
Q Consensus 54 ~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y 129 (259)
+..|+.++++...-+.....++..-.+.++........ .....+...|+.++..+......
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~---------------~~~~~~~~~ll~v~D~l~~a~~~ 80 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKK---------------YALEKFLKDLLPVLDNLERALEA 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577777777766666665555444444443333221 11233445566666666655554
No 24
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=23.29 E-value=5e+02 Score=22.60 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcCccchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 025038 106 KEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQV 185 (259)
Q Consensus 106 ~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK~tg~~l~~~f~~~v~~~pF~~~~~l~~Li~~ve~l~~~~ 185 (259)
..+...++.++..+|.|+.-|---..+...|+- +...+-++...-|-+.+==..|-++|..||-.+
T Consensus 146 ~q~An~i~taiNt~YtE~giltPrKvIQlEGLL--------------SRELfgkiakyVfNkYEWpesLD~EVdRI~LEY 211 (236)
T PF07067_consen 146 NQQANTIRTAINTCYTEIGILTPRKVIQLEGLL--------------SRELFGKIAKYVFNKYEWPESLDSEVDRIYLEY 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--------------HHHHHHHHHHHHhccccCchhhHhhhhhheeee
Confidence 456678999999999999888776666666652 222222222222222222233446888999999
Q ss_pred cCCC
Q 025038 186 FPVD 189 (259)
Q Consensus 186 f~~~ 189 (259)
.+.|
T Consensus 212 RTKG 215 (236)
T PF07067_consen 212 RTKG 215 (236)
T ss_pred eccc
Confidence 9888
No 25
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=22.98 E-value=5.9e+02 Score=23.29 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhhcCccchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q 025038 135 TGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVD 189 (259)
Q Consensus 135 taf~KILKK~DK~tg~~l~~~f~~~v~~~pF~~~~~l~~Li~~ve~l~~~~f~~~ 189 (259)
..+.+.+||+.-..-....-++- .++.. +.+.+..++.++|.+|..+-..|
T Consensus 123 ~~iy~~mKk~H~fLTs~~D~~~a-~lLA~---~~~~~e~l~~~~E~~Y~~L~~~~ 173 (297)
T PF13170_consen 123 KEIYKEMKKKHPFLTSPEDYPFA-ALLAM---TSEDVEELAERMEQCYQKLADAG 173 (297)
T ss_pred HHHHHHHHHhCccccCccchhHH-HHHhc---ccccHHHHHHHHHHHHHHHHHhC
Confidence 45667777765443222111111 12222 45678899999999999887755
No 26
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=22.52 E-value=1.2e+02 Score=19.06 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 025038 110 AEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKY 144 (259)
Q Consensus 110 ~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~ 144 (259)
.-|..++..+.+.+.......-++...|++=+|||
T Consensus 8 ~~i~~aL~~~~gn~~~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 8 QLIRQALERCGGNVSKAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHhC
Confidence 34566677777777777777888888888888876
No 27
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=21.91 E-value=65 Score=30.01 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=20.9
Q ss_pred HHhhhCCcccccccCCCCCCCCchhh
Q 025038 219 QEIRSGSSTRSQFSLPPLDLSDSEFI 244 (259)
Q Consensus 219 ~~~~~~ss~~~~~~~~~~~~~~~~~~ 244 (259)
..+..|+||+++|-+||+.....|.+
T Consensus 26 ~~l~ggrstvs~f~~P~Fk~~SLd~l 51 (383)
T COG5127 26 WDLYGGRSTVSRFLLPSFKGVSLDGL 51 (383)
T ss_pred HHHhcCccccccccCCCccccchHHH
Confidence 34668889999999999987766644
No 28
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=21.72 E-value=1.4e+02 Score=20.91 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhhcCccchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 025038 135 TGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQ 184 (259)
Q Consensus 135 taf~KILKK~DK~tg~~l~~~f~~~v~~~pF~~~~~l~~Li~~ve~l~~~ 184 (259)
.|+.||+|...+.+...+.....+.+ ..+|- .....+-..+|.|..+
T Consensus 11 AaIVrimK~~k~~~~~~L~~~v~~~l-~~~f~--~~~~~ik~~Ie~LIek 57 (68)
T PF10557_consen 11 AAIVRIMKQEKKLSHDELINEVIEEL-KKRFP--PSVSDIKKRIESLIEK 57 (68)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHHHHT-TTTS-----HHHHHHHHHHHHHT
T ss_pred hheehhhhhcCceeHHHHHHHHHHHh-cCCcC--CCHHHHHHHHHHHHHh
Confidence 68899999887665544444433333 33552 4455556666766653
No 29
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.57 E-value=5.6e+02 Score=22.96 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=6.1
Q ss_pred cCChHhHHHHHhh
Q 025038 22 FLSYKRLKKLVNL 34 (259)
Q Consensus 22 Yi~Yk~LKk~IK~ 34 (259)
|||-.-..|.|+.
T Consensus 102 hiD~elvrkEl~n 114 (290)
T COG4026 102 HIDVELVRKELKN 114 (290)
T ss_pred ccCHHHHHHHHHH
Confidence 4454444444443
No 30
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=21.24 E-value=2.8e+02 Score=18.90 Aligned_cols=65 Identities=8% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 025038 67 FFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYT 135 (259)
Q Consensus 67 Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~t 135 (259)
=+.....++...+..|...+..+...|....+. .+...+..+...+.++...|..+..+..-...
T Consensus 15 ~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~----af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~ 79 (86)
T PF06013_consen 15 QLQAQADELQSQLQQLESSIDSLQASWQGEAAD----AFQDKFEEWNQAFRQLNEALEELSQALRQAAQ 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777777776666422111 14455556666666666666666655444433
No 31
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=21.17 E-value=5.9e+02 Score=26.05 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=34.5
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhcCccchH--H-HHHHhhcCCC--------CCHHHHHHHHHHHHHHHHHHcC
Q 025038 126 LVNYSNINYTGLAKILKKYDKRTGGLLRL--L-FIQKVLKQPF--------FTTEVVSKLIKECESTIAQVFP 187 (259)
Q Consensus 126 L~~y~~LN~taf~KILKK~DK~tg~~l~~--~-f~~~v~~~pF--------~~~~~l~~Li~~ve~l~~~~f~ 187 (259)
+.....-|...++|||++|+-.- .+. . ..++| ..+| +..+.+..+-+.|+.-|.++|.
T Consensus 621 i~~~~~ySk~~l~kvl~~y~~ke---v~k~i~~l~krv-eKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~ 689 (701)
T PF09763_consen 621 ISYQAAYSKQELKKVLKSYPSKE---VRKGIEALYKRV-EKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYE 689 (701)
T ss_pred cccchhccHHHHHHHHHhCChHH---HHHHHHHHHHHH-HHHcCCccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34455667888889999886332 211 1 11233 3334 4567777777777777766653
No 32
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=20.56 E-value=1.9e+02 Score=24.90 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025038 55 YLLNHEIDKFNAFFMEKEEDFIIKRKELQ 83 (259)
Q Consensus 55 ~~L~~EL~KVn~Fy~~ke~el~~rl~~L~ 83 (259)
..=+.||.+.+.||.++...+..+-.+..
T Consensus 140 e~ke~el~~~d~fykeql~~le~k~~e~y 168 (187)
T PF05300_consen 140 EEKEAELKKQDAFYKEQLARLEEKNAEFY 168 (187)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999888777755443
No 33
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=20.16 E-value=73 Score=21.24 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhhcCc
Q 025038 135 TGLAKILKKYDKRTGG 150 (259)
Q Consensus 135 taf~KILKK~DK~tg~ 150 (259)
-||.|++||++|=...
T Consensus 18 K~y~Kl~KKq~KEl~~ 33 (47)
T PF06631_consen 18 KAYVKLLKKQQKELEE 33 (47)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788999999886533
Done!