Query 025038
Match_columns 259
No_of_seqs 194 out of 1004
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okq_A BUD site selection prot 57.3 69 0.0024 25.2 9.6 110 50-182 8-120 (141)
2 2akf_A Coronin-1A; coiled coil 42.0 43 0.0015 19.2 3.8 29 55-87 2-30 (32)
3 3pp5_A BRK1, protein brick1; t 40.9 90 0.0031 21.8 6.9 41 49-89 17-57 (73)
4 3p8c_E Probable protein brick1 39.7 95 0.0033 21.7 6.9 41 49-89 17-57 (75)
5 1deq_A Fibrinogen (alpha chain 37.7 1.5E+02 0.005 27.2 8.7 52 61-128 104-155 (390)
6 3gwk_C SAG1039, putative uncha 34.9 1.1E+02 0.0039 21.2 10.3 67 59-129 11-77 (98)
7 3ghg_A Fibrinogen alpha chain; 33.9 1.9E+02 0.0064 27.7 9.1 26 108-133 132-157 (562)
8 3t98_B Nucleoporin NUP58/NUP45 30.2 1.6E+02 0.0053 21.3 9.0 31 108-138 52-82 (93)
9 2bbh_A Divalent cation transpo 27.9 2E+02 0.0069 23.8 7.8 32 113-144 211-242 (269)
10 2p2u_A HOST-nuclease inhibitor 27.1 2E+02 0.0068 22.9 7.2 43 48-90 30-72 (171)
11 3zyl_A Phosphatidylinositol-bi 25.8 2.1E+02 0.0071 24.6 7.5 75 73-148 169-251 (271)
12 3nvo_A Zinc transport protein 24.3 2.1E+02 0.0073 23.6 7.3 64 61-143 153-216 (264)
13 3twe_A Alpha4H; unknown functi 24.0 96 0.0033 16.9 3.2 20 118-144 5-24 (27)
14 2bn5_B U1 small nuclear ribonu 23.8 27 0.00091 18.9 0.8 11 227-237 6-16 (26)
15 4b6i_A SMA2266; signaling prot 23.0 52 0.0018 24.5 2.6 55 121-178 43-100 (102)
16 4ev6_A Magnesium transport pro 20.9 4.1E+02 0.014 23.0 11.0 69 61-147 162-230 (339)
17 4egw_A Magnesium transport pro 20.5 3.8E+02 0.013 22.4 11.4 66 61-144 162-227 (280)
18 2yo3_A General control protein 20.5 4.2E+02 0.014 22.9 8.9 58 58-131 204-261 (268)
No 1
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=57.26 E-value=69 Score=25.20 Aligned_cols=110 Identities=15% Similarity=0.272 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhH
Q 025038 50 EADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNY 129 (259)
Q Consensus 50 e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y 129 (259)
.+.|+..=...|+.-..=...+.+++..-++.|++.+.. + |..| ....+..+.+.+...-.+|..++.|
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~----R---gvrP----~~~ql~~v~kdi~~a~~eL~~m~~~ 76 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAE----R---RSQP----AKKKLETVSKDLENAQADVLKLQEF 76 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---CCCC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----c---CCCC----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665555555443333334444444444444443322 1 1223 4778888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCccchHHHHHH-hhcCCCCC--HHHHHHHHHHHHHHH
Q 025038 130 SNINYTGLAKILKKYDKRTGGLLRLLFIQK-VLKQPFFT--TEVVSKLIKECESTI 182 (259)
Q Consensus 130 ~~LN~taf~KILKK~DK~tg~~l~~~f~~~-v~~~pF~~--~~~l~~Li~~ve~l~ 182 (259)
...=.-...||=-+ . +++ +..+-||+ .+.+..|...++.+.
T Consensus 77 i~~ekP~WKKiWE~-----------E-L~~VceEQqfl~~QedL~~DL~eDL~ka~ 120 (141)
T 3okq_A 77 IDTEKPHWKKTWEA-----------E-LDKVCEEQQFLTLQEELILDLKEDLGKAL 120 (141)
T ss_dssp HHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchhHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87666666555322 1 122 24566665 344555555554443
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=41.99 E-value=43 Score=19.19 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025038 55 YLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQ 87 (259)
Q Consensus 55 ~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~ 87 (259)
+.|+.|+.+++.-.. ++..|++.|++.++
T Consensus 2 srlee~~r~l~~ivq----~lq~r~drle~tvq 30 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQ----KLQERLDRLEETVQ 30 (32)
T ss_dssp CHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 357888888876554 44556666665543
No 3
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=40.86 E-value=90 Score=21.75 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025038 49 AEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRV 89 (259)
Q Consensus 49 ~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~ 89 (259)
..++|++.+..-|.++..|...=..-+..++..|..++..+
T Consensus 17 ~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~l 57 (73)
T 3pp5_A 17 EQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTIL 57 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999988777888887777766653
No 4
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=39.71 E-value=95 Score=21.73 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025038 49 AEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRV 89 (259)
Q Consensus 49 ~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~ 89 (259)
..++|++.+..-|.++..|...=..-+..++..|..++..+
T Consensus 17 ~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~L 57 (75)
T 3p8c_E 17 ANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTAL 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999887777777777777666543
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.69 E-value=1.5e+02 Score=27.19 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Q 025038 61 IDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVN 128 (259)
Q Consensus 61 L~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~ 128 (259)
.+..+.-|.+-.+++..++..|+..|...+ ..++.|+..|.+...+|..|+.
T Consensus 104 ~~dndn~~~e~s~eLe~~i~~lk~~V~~q~----------------~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 104 ANNNDNTFKQINEDLRSRIEILRRKVIEQV----------------QRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555666666766766665421 2566677777777777777774
No 6
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=34.87 E-value=1.1e+02 Score=21.16 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhH
Q 025038 59 HEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNY 129 (259)
Q Consensus 59 ~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y 129 (259)
.+|..+-.-|.....++...+..|...+..+...|....+. .+...+......+..+..-|..+..+
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~----aF~~~~~~~~~~~~~~~~~L~~i~~~ 77 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFD----SFEAQFNELSPKITEFAQLLEDINQQ 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777888888888888888887777322111 14445555555555555555555433
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.88 E-value=1.9e+02 Score=27.67 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 025038 108 DMAEIRKDIVNFHGEMVLLVNYSNIN 133 (259)
Q Consensus 108 ~~~~l~~~l~el~~el~~L~~y~~LN 133 (259)
.++.|+..|.+...+|+.|+.=+.+.
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777666555
No 8
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.17 E-value=1.6e+02 Score=21.34 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025038 108 DMAEIRKDIVNFHGEMVLLVNYSNINYTGLA 138 (259)
Q Consensus 108 ~~~~l~~~l~el~~el~~L~~y~~LN~taf~ 138 (259)
.+..+...|+.+-+.+..|...+.--.+-+.
T Consensus 52 ~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl 82 (93)
T 3t98_B 52 AMQKIYQTFVALAAQLQSIHENVKVLKEQYL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777766655444433
No 9
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=27.92 E-value=2e+02 Score=23.82 Aligned_cols=32 Identities=9% Similarity=-0.018 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 025038 113 RKDIVNFHGEMVLLVNYSNINYTGLAKILKKY 144 (259)
Q Consensus 113 ~~~l~el~~el~~L~~y~~LN~taf~KILKK~ 144 (259)
...+..+-+++..|+++..=+..++.++.+..
T Consensus 211 l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 211 VQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678888889999999999999999998753
No 10
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=27.06 E-value=2e+02 Score=22.91 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025038 48 EAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVI 90 (259)
Q Consensus 48 ~~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~ 90 (259)
....+-...++.|++.|...|......+..+++.|+..+..+.
T Consensus 30 r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~ 72 (171)
T 2p2u_A 30 RKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFA 72 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677778888887777777777777777776666543
No 11
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=25.78 E-value=2.1e+02 Score=24.60 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHH---HHHHhh
Q 025038 73 EDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMV-----LLVNYSNINYTGLA---KILKKY 144 (259)
Q Consensus 73 ~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~-----~L~~y~~LN~taf~---KILKK~ 144 (259)
+++..++..||.++..+.... +.+...........+.-+-++...+|..+. +|.+|-++.+..-. +|.|||
T Consensus 169 ~~Ll~~l~~lQ~lld~ll~~~-~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf 247 (271)
T 3zyl_A 169 EKLLKTVPIIQNQMDALLDFN-VNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKF 247 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccC-cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 356778888888888876532 110000000012344455566666666555 56677666554332 355666
Q ss_pred hhhc
Q 025038 145 DKRT 148 (259)
Q Consensus 145 DK~t 148 (259)
.+.+
T Consensus 248 ~~Q~ 251 (271)
T 3zyl_A 248 LTRM 251 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 12
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=24.28 E-value=2.1e+02 Score=23.57 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025038 61 IDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKI 140 (259)
Q Consensus 61 L~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KI 140 (259)
++.+.+-|..-.+++..+++.|++++-.- . ......+..+-+++..|+++..=|...+.++
T Consensus 153 ld~ivd~y~~~l~~l~~~id~lE~~l~~~-~------------------~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L 213 (264)
T 3nvo_A 153 CDALTDHASEFIEELHDKIIDLEDNLLDQ-Q------------------IPPRGFLALLRKQLIVMRRYMAPQRDVYARL 213 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-----C------------------CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C------------------chhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444455555556666666666554211 0 0112446777788888999999999999998
Q ss_pred HHh
Q 025038 141 LKK 143 (259)
Q Consensus 141 LKK 143 (259)
.+.
T Consensus 214 ~~~ 216 (264)
T 3nvo_A 214 ASE 216 (264)
T ss_dssp TTS
T ss_pred HhC
Confidence 764
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.02 E-value=96 Score=16.86 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 025038 118 NFHGEMVLLVNYSNINYTGLAKILKKY 144 (259)
Q Consensus 118 el~~el~~L~~y~~LN~taf~KILKK~ 144 (259)
++|.++..|+ .-++|+-||.
T Consensus 5 elykeledlq-------erlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQ-------ERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHh
Confidence 4555555554 3455665553
No 14
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=23.83 E-value=27 Score=18.94 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=7.9
Q ss_pred ccccccCCCCC
Q 025038 227 TRSQFSLPPLD 237 (259)
Q Consensus 227 ~~~~~~~~~~~ 237 (259)
..++||+||-.
T Consensus 6 hhnmfsvpppp 16 (26)
T 2bn5_B 6 HHNMFSVPPPP 16 (26)
T ss_dssp CCCCCSCCCCS
T ss_pred cCceecCCCCC
Confidence 45789998754
No 15
>4b6i_A SMA2266; signaling protein; 1.95A {Serratia marcescens}
Probab=23.03 E-value=52 Score=24.49 Aligned_cols=55 Identities=5% Similarity=0.079 Sum_probs=36.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhhcCcc-chH--HHHHHhhcCCCCCHHHHHHHHHHH
Q 025038 121 GEMVLLVNYSNINYTGLAKILKKYDKRTGGL-LRL--LFIQKVLKQPFFTTEVVSKLIKEC 178 (259)
Q Consensus 121 ~el~~L~~y~~LN~taf~KILKK~DK~tg~~-l~~--~f~~~v~~~pF~~~~~l~~Li~~v 178 (259)
..+...-+|-.=++++++++.+||.++.-.+ ... .+++.+ -|+++..|+.|+++.
T Consensus 43 ~A~lE~~~y~~Ea~~~~~~Li~kyl~~~y~~~~g~~~~llKCl---dlyHS~ELd~L~~k~ 100 (102)
T 4b6i_A 43 SAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCL---SLQNASEAETIFERY 100 (102)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCCCCSSSSCCHHHHHH---GGGTCHHHHHHHHHH
T ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHhccCCCCCchhHHHHHH---HhhchHHHHHHHHHh
Confidence 3344455665558889999999998776332 333 334444 488899898888764
No 16
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.94 E-value=4.1e+02 Score=23.00 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025038 61 IDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKI 140 (259)
Q Consensus 61 L~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KI 140 (259)
++.+.+-|..-.+++..+++++++++-.- + . ......+..+-+++..|++...-|...+.++
T Consensus 162 ld~ivd~~~~~l~~l~~~i~~lE~~l~~~----------~----~----~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L 223 (339)
T 4ev6_A 162 LNEITRSYSRILMNLEDELEELEDKLLAG----------Y----D----REVMEKILGLRKTLVYFHKSLIANRDVLVLL 223 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTC----------C----C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------h----h----hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44455555555666666666666554210 0 1 1234556677778888888888888888877
Q ss_pred HHhhhhh
Q 025038 141 LKKYDKR 147 (259)
Q Consensus 141 LKK~DK~ 147 (259)
.+.+...
T Consensus 224 ~~~~~~~ 230 (339)
T 4ev6_A 224 KRKYLPI 230 (339)
T ss_dssp HHSCBTT
T ss_pred hhccccc
Confidence 7654433
No 17
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=20.49 E-value=3.8e+02 Score=22.41 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025038 61 IDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKI 140 (259)
Q Consensus 61 L~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~LN~taf~KI 140 (259)
++.|.+-|..-.+++..+++.|++++-. . + .. .....+.++-+++..|++...-|...+.++
T Consensus 162 ld~ivd~y~~~l~~i~~~id~lE~~l~~--~--------~----~~----~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L 223 (280)
T 4egw_A 162 LNEITRSYSRILMNLEDELEELEDKLLA--G--------Y----DR----EVMEKILGLRKTLVYFHKSLIANRDVLVLL 223 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT--C--------C----CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--C--------C----ch----hHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556666666677777777777766532 0 0 12 234567778888889999999999999888
Q ss_pred HHhh
Q 025038 141 LKKY 144 (259)
Q Consensus 141 LKK~ 144 (259)
.+..
T Consensus 224 ~~~~ 227 (280)
T 4egw_A 224 KRKY 227 (280)
T ss_dssp HHSC
T ss_pred HhcC
Confidence 7643
No 18
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=20.45 E-value=4.2e+02 Score=22.91 Aligned_cols=58 Identities=14% Similarity=0.318 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 025038 58 NHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSN 131 (259)
Q Consensus 58 ~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~y~~ 131 (259)
..-+..++.+...+..++..++..+..++..+ .+..+++...+..+-+++..++....
T Consensus 204 ~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 204 KRSVEEANTYTDQKMGEMNSKIKGVENKMKQI----------------EDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33566778888888888888888777777654 33445566666666666666654443
Done!