Query 025038
Match_columns 259
No_of_seqs 194 out of 1004
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 18:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025038.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025038hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bbha1 d.328.1.1 (A:13-244) M 36.6 46 0.0034 25.2 7.1 31 113-143 196-226 (232)
2 d2ddha2 a.29.3.2 (A:475-655) P 31.0 95 0.0069 22.9 8.5 98 116-213 52-160 (181)
3 d1wlza1 a.39.1.7 (A:229-311) D 20.8 90 0.0066 19.3 5.2 50 125-174 10-61 (83)
4 d1wa8a1 a.25.3.1 (A:1-99) ESAT 19.4 1.1E+02 0.0081 19.6 7.7 65 60-128 9-73 (99)
5 d1sfka_ a.190.1.1 (A:) Flavivi 17.8 16 0.0011 23.9 0.5 29 123-151 39-67 (73)
6 d1r6ra_ a.190.1.1 (A:) Flavivi 14.5 19 0.0013 24.0 0.2 28 124-151 44-71 (80)
7 d1etxa_ a.4.1.12 (A:) FIS prot 13.7 45 0.0033 22.0 2.1 36 110-145 52-87 (89)
8 d1khba1 c.91.1.1 (A:260-622) C 11.7 1.3E+02 0.0097 25.1 5.0 34 55-88 324-362 (363)
9 d1umqa_ a.4.1.12 (A:) Photosyn 10.4 49 0.0035 20.1 1.3 39 108-146 21-59 (60)
10 d1wg8a1 a.60.13.1 (A:109-206) 9.4 1.8E+02 0.013 19.3 4.2 45 134-178 31-76 (98)
No 1
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=36.59 E-value=46 Score=25.19 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 025038 113 RKDIVNFHGEMVLLVNYSNINYTGLAKILKK 143 (259)
Q Consensus 113 ~~~l~el~~el~~L~~y~~LN~taf~KILKK 143 (259)
...+..+-+++..|+++..=+...+.++.+-
T Consensus 196 l~~i~~lrr~l~~lrr~l~p~revl~~L~r~ 226 (232)
T d2bbha1 196 VQRTHQLKRNLVELRKTIWPLREVLSSLYRD 226 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788888888999988899999998864
No 2
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.00 E-value=95 Score=22.89 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhHH-HHHH---HHHHHHHHhhhhhcCccchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHcCCC-h
Q 025038 116 IVNFHGEMVLLVNYS-NINY---TGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVD-E 190 (259)
Q Consensus 116 l~el~~el~~L~~y~-~LN~---taf~KILKK~DK~tg~~l~~~f~~~v~~~pF~~~~~l~~Li~~ve~l~~~~f~~~-~ 190 (259)
+...|.+...++.|. .++. .+++.+|++.-+..+...-..........-+.+.+.+..+-..++.++..+.+.. .
T Consensus 52 ~a~Ah~~~~il~~F~~~i~~~~~~~~k~vL~~L~~LyaL~~i~~~~g~fl~~g~ls~~q~~~i~~~i~~L~~~lrp~Av~ 131 (181)
T d2ddha2 52 ASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNAVA 131 (181)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777788875 2332 4778888887776655432233334456678899999999999999999998864 2
Q ss_pred hhhcC------CCccccccccchHhhHHH
Q 025038 191 KEIGR------REPTIRVTGEGVFRNTVA 213 (259)
Q Consensus 191 ~~~~~------~~~~~~~~~~~~~~~~~~ 213 (259)
-+.+. ..++.+.+.+.+|.+-..
T Consensus 132 LVDaF~~~D~~L~S~lG~~DG~vYe~l~~ 160 (181)
T d2ddha2 132 LVDAFDFKDMTLGSVLGRYDGNVYENLFE 160 (181)
T ss_dssp HHHTTCCCHHHHTCSTTCTTCCHHHHHHH
T ss_pred HhHhcCCCHHHHccHHhccCChHHHHHHH
Confidence 22111 234556666778876553
No 3
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.77 E-value=90 Score=19.31 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhcCcc-chHHHHHHhh-cCCCCCHHHHHHH
Q 025038 125 LLVNYSNINYTGLAKILKKYDKRTGGL-LRLLFIQKVL-KQPFFTTEVVSKL 174 (259)
Q Consensus 125 ~L~~y~~LN~taf~KILKK~DK~tg~~-l~~~f~~~v~-~~pF~~~~~l~~L 174 (259)
.|+....-+...+.+..+.||+--... ....|.+.+. -.+-.+.+.+..|
T Consensus 10 ~l~~~i~~~~~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l 61 (83)
T d1wlza1 10 RLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL 61 (83)
T ss_dssp HHHHHHHHTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHH
Confidence 455666667788999999999876444 4445554443 2223455544433
No 4
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.42 E-value=1.1e+02 Score=19.63 Aligned_cols=65 Identities=8% Similarity=0.134 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Q 025038 60 EIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVN 128 (259)
Q Consensus 60 EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~~~~~~~s~~s~~~~~~~~~~l~~~l~el~~el~~L~~ 128 (259)
+|...-.=+.....++...+..|...+..+...|..... ..+...+......+.++...|..+..
T Consensus 9 ~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~----~af~~~~~~w~~~~~~l~~~L~~i~~ 73 (99)
T d1wa8a1 9 TLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAG----TAAQAAVVRFQEAANKQKQELDEIST 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556667777777888888777665622100 01344445555556665555555543
No 5
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=17.80 E-value=16 Score=23.90 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhcCcc
Q 025038 123 MVLLVNYSNINYTGLAKILKKYDKRTGGL 151 (259)
Q Consensus 123 l~~L~~y~~LN~taf~KILKK~DK~tg~~ 151 (259)
..+++++..+|...-.|||+.|.|-.|.-
T Consensus 39 ~~ll~RW~~v~K~~A~k~L~~FKKeig~m 67 (73)
T d1sfka_ 39 RAVLDRWRSVNKQTAMKHLLSFKKELGTL 67 (73)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999987653
No 6
>d1r6ra_ a.190.1.1 (A:) Flavivirus capsid protein C {Dengue virus type 2 [TaxId: 11060]}
Probab=14.46 E-value=19 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=24.4
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhcCcc
Q 025038 124 VLLVNYSNINYTGLAKILKKYDKRTGGL 151 (259)
Q Consensus 124 ~~L~~y~~LN~taf~KILKK~DK~tg~~ 151 (259)
.+++.|..+|...-.||||+|.|..|.-
T Consensus 44 ~l~~rW~~v~k~~aik~Lk~FKk~i~~m 71 (80)
T d1r6ra_ 44 GILKRWGTIKKSKAINVLRGFRKEIGRM 71 (80)
T ss_dssp HHHHHHTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999987653
No 7
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=13.67 E-value=45 Score=22.04 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 025038 110 AEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYD 145 (259)
Q Consensus 110 ~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~D 145 (259)
.-|..++..+.+....-....-++.+.+++-+|||.
T Consensus 52 ~~i~~aL~~~~gn~~~aA~~LGisR~tL~~klk~~g 87 (89)
T d1etxa_ 52 PLLDMVMQYTRGNATRAALMMGINRGTLRKKLKKYG 87 (89)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHHHhC
Confidence 335566666666677777778889999999999984
No 8
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.69 E-value=1.3e+02 Score=25.08 Aligned_cols=34 Identities=12% Similarity=0.368 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 025038 55 YLLNHEIDKFNAFFMEKEE-----DFIIKRKELQQRLQR 88 (259)
Q Consensus 55 ~~L~~EL~KVn~Fy~~ke~-----el~~rl~~L~~~i~~ 88 (259)
.....|++.+..||.++.. ++..++..|++++..
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~ 362 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQ 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 3457889999999876653 666677777766653
No 9
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.42 E-value=49 Score=20.10 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 025038 108 DMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK 146 (259)
Q Consensus 108 ~~~~l~~~l~el~~el~~L~~y~~LN~taf~KILKK~DK 146 (259)
+...|..++..+.+....-..-.-|..+.|+.-+|||..
T Consensus 21 Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmkky~~ 59 (60)
T d1umqa_ 21 RWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKRSP 59 (60)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 335567777777777777777788888889999998864
No 10
>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]}
Probab=9.37 E-value=1.8e+02 Score=19.30 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhhcCcc-chHHHHHHhhcCCCCCHHHHHHHHHHH
Q 025038 134 YTGLAKILKKYDKRTGGL-LRLLFIQKVLKQPFFTTEVVSKLIKEC 178 (259)
Q Consensus 134 ~taf~KILKK~DK~tg~~-l~~~f~~~v~~~pF~~~~~l~~Li~~v 178 (259)
..-+.+|+++|-.--... +...-++.....|+-++.+|..++..+
T Consensus 31 ~~eL~~if~~yGee~~a~~iA~~Iv~~R~~~~i~tT~dL~~ii~~~ 76 (98)
T d1wg8a1 31 LEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVRKA 76 (98)
T ss_dssp HHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh
Confidence 355677777775433221 222223334567888888888777654
Done!