BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025039
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 112/209 (53%), Gaps = 11/209 (5%)
Query: 21 SAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLY 77
S Y + YWD+R+ +D Y+W D+S FR L++P ++P +L LGCGNS LS L+
Sbjct: 2 SGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELF 61
Query: 78 NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LPFSNDCFDVVIEKAT 134
G +T +D S+V V MQ Y V L + +D L F + FDVV+EK T
Sbjct: 62 LGGFPNVTSVDYSSVVVAAMQ-----ACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGT 116
Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFT 194
++ L DPW E V V +L V RVL P G FIS++ PHFR + +
Sbjct: 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYG 176
Query: 195 WSVEWITFGDGFHYFFYILRKGKRSSADE 223
WS+ T+G GFH+ Y++ KG + S +
Sbjct: 177 WSLRHATYGSGFHFHLYLMHKGGKLSVAQ 205
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 58 PNSSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM 116
P + VLE GCG + L + A IT ID+S ++EK +E G K VK L+A++
Sbjct: 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI 96
Query: 117 LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171
LPF + FD + +E L PE L+ + +VLKP G
Sbjct: 97 FSLPFEDSSFDHIFVCFVLEHL---------QSPEEA------LKSLKKVLKPGG 136
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 53 QPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVL 112
+ ++K + VL++GCG+ + L G A+ +D+S V ++K +ER ++ +
Sbjct: 48 EQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVG-VDISEVXIQKGKER---GEGPDLSFI 103
Query: 113 EADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171
+ D+ LPF N+ F+ + ++E W +P + L + RVLK DG
Sbjct: 104 KGDLSSLPFENEQFEAIXAINSLE---------WTEEP------LRALNEIKRVLKSDG 147
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 46 SHFRHLVQP----HIKPN-SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQER 100
H+ + V P HIK VL++GC + L + +G T ++ I+ A E+ +E+
Sbjct: 15 GHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEK 73
Query: 101 LLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAML 160
L V + + + D P+ + FD VI +E LF DPW A++
Sbjct: 74 L-----DHVVLGDIETXDXPYEEEQFDCVIFGDVLEHLF----DPW-----------AVI 113
Query: 161 EGVHRVLKPDGLFIS 175
E V +K +G+ ++
Sbjct: 114 EKVKPYIKQNGVILA 128
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 22/137 (16%)
Query: 51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-------L 103
++ +++ + +L++GCG+ ++S L + G + +T ID+++ A+ +
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELASKGYS-VTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 104 KGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
G E KV A L F + FD + +A + + P P+ +++ ++ V
Sbjct: 82 GGKAEFKVENAS--SLSFHDSSFDFAVMQAFLTSV---------PDPKERSRI---IKEV 127
Query: 164 HRVLKPDGLFISVSFGQ 180
RVLKP V FGQ
Sbjct: 128 FRVLKPGAYLYLVEFGQ 144
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
IK + VLE+GCG L+ L IT ID+ + + ++++R L +GY ++V E D
Sbjct: 40 IKSSDIVLEIGCGTGNLTVKLLPLAKKVIT-IDIDSRMISEVKKRCLYEGYNNLEVYEGD 98
Query: 116 MLDLPFSNDCFDVV 129
+ F FDV
Sbjct: 99 AIKTVFPK--FDVC 110
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 27 HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITC 86
++WD ++H + L+ P +P +L+LGCG +L+E + G +
Sbjct: 28 NFWDATLYQDKHSFVWQYGEDLLQLLNP--QPGEFILDLGCGTGQLTEKIAQSG-AEVLG 84
Query: 87 IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPW 146
D +A +EK ++ Y + AD + ++ +F N+ W
Sbjct: 85 TDNAATXIEKARQN-----YPHLHFDVADARNFRVDK----------PLDAVFSNAXLHW 129
Query: 147 NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR 184
+PE A + +H+ LK G F++ G+ + +
Sbjct: 130 VKEPE------AAIASIHQALKSGGRFVAEFGGKGNIK 161
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK 110
++ ++K VL+LG G + S L G + +D S +E +E KG K
Sbjct: 47 FLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEXLEVARE----KGVK--N 99
Query: 111 VLEADMLDLPFSNDCFDVVIEKATMEVL-FVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 169
V+EA DLPF + F+ V+ A +VL +V + D + RVL P
Sbjct: 100 VVEAKAEDLPFPSGAFEAVL--ALGDVLSYVENKDK-------------AFSEIRRVLVP 144
Query: 170 DGLFISV 176
DGL I+
Sbjct: 145 DGLLIAT 151
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK 110
L+ + K VL+L CG S L + G + +D+S + K +E + V+
Sbjct: 31 LLXKYXKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDXIRKAREYAKSRE-SNVE 88
Query: 111 VLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 170
+ D L F + FD VI F++S + P ++ + + V RVLKP
Sbjct: 89 FIVGDARKLSFEDKTFDYVI--------FIDSIVHFEP-----LELNQVFKEVRRVLKPS 135
Query: 171 GLFI 174
G FI
Sbjct: 136 GKFI 139
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEA 114
++ VL++GCG + + L +T I +S V + R G V A
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118
Query: 115 DMLDLPFSNDCFDVV 129
D DLPF + FD V
Sbjct: 119 DAXDLPFEDASFDAV 133
>pdb|3MER|A Chain A, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|3MER|B Chain B, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|2KW5|A Chain A, Solution Nmr Structure Of The Slr1183 Protein From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
Length = 202
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 29 WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCID 88
WDERFS E Y + + + F V I P +L L G R + L + G +T +D
Sbjct: 2 WDERFSQSE-YVYGTEPNDFLVSVANQI-PQGKILCLAEGEGRNACFLASLGYE-VTAVD 58
Query: 89 LSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP 148
S+V + K ++ KG K + +++++ D D ++ ++ +F +
Sbjct: 59 QSSVGLAKAKQLAQEKGVK-ITTVQSNLADFDIVADAWEGIVS------IFCHL------ 105
Query: 149 QPETVTKVMAMLEGVHRVLKPDGLFISVSF 178
P ++ + + V++ LKP G+FI F
Sbjct: 106 -PSSLRQ--QLYPKVYQGLKPGGVFILEGF 132
>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
Length = 215
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 36/118 (30%)
Query: 57 KPNSSVL-ELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
+P S V+ + GCG+ RL+ + N + C DL+++ + +V D
Sbjct: 65 RPASLVVADFGCGDCRLASSIRN----PVHCFDLASL---------------DPRVTVCD 105
Query: 116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173
M +P ++ DV + ++ T + LE +RVLKP GL
Sbjct: 106 MAQVPLEDESVDVAVFCLSL----------------MGTNIRDFLEEANRVLKPGGLL 147
>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
Length = 313
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 41 WLKDY--SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQ 98
W+K F V+ K + +VL+LGCG I + C D++ V+V++ Q
Sbjct: 15 WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQ 74
Query: 99 ER 100
+R
Sbjct: 75 QR 76
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 33 FSDEEHY----EWLKD---YSHFRHLV--QPHIKPNSSVLELGCGNSRLSEGLYNDGITA 83
FS HY E LKD +R + PHI + VL++GCG LS G
Sbjct: 11 FSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 70
Query: 84 ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI 130
+ +D S + + M L K + +++ + ++ + DV+I
Sbjct: 71 VIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVII 117
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 33 FSDEEHY----EWLKD---YSHFRHLV--QPHIKPNSSVLELGCGNSRLSEGLYNDGITA 83
FS HY E LKD +R + PHI + VL++GCG LS G
Sbjct: 30 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 89
Query: 84 ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI 130
+ +D S + + M L K + +++ + ++ + DV+I
Sbjct: 90 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVII 136
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 62 VLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL 101
V++LGCG L + L D IT +D+S ++E QERL
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 62 VLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL 101
V++LGCG L + L D IT +D+S ++E QERL
Sbjct: 23 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 63
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 27/139 (19%)
Query: 62 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLP 120
+++LGCG + G + + +DLS EK R G E AD+ L
Sbjct: 47 IVDLGCGFGWFCRWAHEHGASYVLGLDLS----EKXLARARAAGPDTGITYERADLDKLH 102
Query: 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180
D FD+ + V V + VH+ L P G F+ F
Sbjct: 103 LPQDSFDLAYSSLALHY---------------VEDVARLFRTVHQALSPGGHFV---FST 144
Query: 181 PHFRRPFFNAP-QFTWSVE 198
H P + AP + W+++
Sbjct: 145 EH---PIYXAPARPGWAID 160
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 62 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-- 118
VL++GCG LS G + +D+S++ +E +E + L G+ + + +L + D
Sbjct: 42 VLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFSDKITLLRGKLEDVH 100
Query: 119 LPFSNDCFDVVIEK 132
LPF D++I +
Sbjct: 101 LPFPK--VDIIISE 112
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 62 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 121
VL++G G + ++ + +D + VE KG + V+ + LPF
Sbjct: 25 VLDIGAGAGHTALA-FSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQQGTAESLPF 83
Query: 122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181
+D FD++ + + V + V RVLK DG F+ V P
Sbjct: 84 PDDSFDIITCRYAAHHF---------------SDVRKAVREVARVLKQDGRFLLVDHYAP 128
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
T +V+ + DP P T A EG R L P G+F++
Sbjct: 157 TFDVIISDCTDPIGPGESLFTS--AFYEGCKRCLNPGGIFVA 196
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 72/145 (49%), Gaps = 19/145 (13%)
Query: 33 FSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAV 92
F+D+ YE + +S V+ +KP + L+LGCGN R S L +G + D +A+
Sbjct: 12 FTDK--YELTRTHSEVLEAVKV-VKPGKT-LDLGCGNGRNSLYLAANGYD-VDAWDKNAM 66
Query: 93 AVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPET 152
++ ++ ++ + D+ +L F + +D ++ +T+ ++F+ + +T
Sbjct: 67 SIANVERIKSIENLDNLHTRVVDLNNLTFDGE-YDFIL--STVVLMFL--------EAKT 115
Query: 153 VTKVMAMLEGVHRVLKPDGLFISVS 177
+ ++A ++ R KP G + V+
Sbjct: 116 IPGLIANMQ---RCTKPGGYNLIVA 137
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---YKEVKVL 112
++P VLE+G G ++ L + C +L V ++ +R ++G +++VL
Sbjct: 26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVAC-ELDPRLVAELHKR--VQGTPVASKLQVL 82
Query: 113 EADML--DLPFSNDC 125
D+L DLPF + C
Sbjct: 83 VGDVLKTDLPFFDTC 97
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 33 FSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAV 92
F+D+ YE + +S V+ +KP + L+LGCGN R S L +G + D +A+
Sbjct: 11 FTDK--YELTRTHSEVLEAVKV-VKPGKT-LDLGCGNGRNSLYLAANGYD-VDAWDKNAM 65
Query: 93 AVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPET 152
++ ++ ++ + D+ +L F +D ++ +T+ ++F+ + +T
Sbjct: 66 SIANVERIKSIENLDNLHTRVVDLNNLTFDRQ-YDFIL--STVVLMFL--------EAKT 114
Query: 153 VTKVMAMLEGVHRVLKPDGLFISVS 177
+ ++A ++ R KP G + V+
Sbjct: 115 IPGLIANMQ---RCTKPGGYNLIVA 136
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
+K N VL++ G ++ + + + DL+ ++ + + G+++V+ ++ D
Sbjct: 35 LKGNEEVLDVATGGGHVANA-FAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD 93
Query: 116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
PF+++ F +V + P P + + +RVLK G +
Sbjct: 94 AEQXPFTDERFHIVTCRIAAHHF---------PNP------ASFVSEAYRVLKKGGQLLL 138
Query: 176 VSFGQP 181
V P
Sbjct: 139 VDNSAP 144
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 72 LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE 131
+ E L + + T +D+ +E ++ L K L+ +D+ + +
Sbjct: 90 IREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK----LDDPRVDVQVDDGFMHIAKS 145
Query: 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
+ +V+ V+S +P P TK G+ + LK DG+F++
Sbjct: 146 ENQYDVIMVDSTEPVGPAVNLFTK--GFYAGIAKALKEDGIFVA 187
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA 114
++KP ++LE+G G+ + + T + I+ VE + L G K V V+
Sbjct: 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILG 147
Query: 115 DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQP 150
D + F KA +V+ V +G P P+P
Sbjct: 148 D------GSKGFP---PKAPYDVIIVTAGAPKIPEP 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,501,127
Number of Sequences: 62578
Number of extensions: 362105
Number of successful extensions: 879
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 30
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)