Query 025039
Match_columns 259
No_of_seqs 219 out of 2929
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 6.6E-25 1.4E-29 180.6 2.9 167 58-258 51-220 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 6.2E-24 1.3E-28 176.3 7.6 169 56-258 45-216 (233)
3 KOG1540 Ubiquinone biosynthesi 99.8 1E-20 2.2E-25 153.6 7.7 165 58-257 100-276 (296)
4 TIGR03840 TMPT_Se_Te thiopurin 99.8 8E-19 1.7E-23 143.9 13.5 139 27-180 1-155 (213)
5 PRK11207 tellurite resistance 99.8 3.4E-18 7.4E-23 138.9 14.0 130 25-177 5-134 (197)
6 PF12847 Methyltransf_18: Meth 99.8 5.4E-18 1.2E-22 125.1 11.9 106 58-177 1-111 (112)
7 PRK13255 thiopurine S-methyltr 99.8 7.3E-18 1.6E-22 138.7 13.8 140 25-178 2-156 (218)
8 PF13847 Methyltransf_31: Meth 99.8 3.6E-18 7.9E-23 133.1 11.4 107 57-179 2-112 (152)
9 PLN02233 ubiquinone biosynthes 99.8 5.4E-18 1.2E-22 143.5 12.7 169 56-258 71-244 (261)
10 KOG1271 Methyltransferases [Ge 99.8 2.8E-18 6.1E-23 132.7 9.4 156 18-180 10-184 (227)
11 PF08241 Methyltransf_11: Meth 99.8 2.7E-18 5.9E-23 122.4 8.8 95 63-175 1-95 (95)
12 PLN02244 tocopherol O-methyltr 99.8 1.2E-17 2.7E-22 146.5 14.4 109 57-180 117-226 (340)
13 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.3E-18 2.8E-23 141.2 6.7 106 58-180 59-164 (243)
14 PF03848 TehB: Tellurite resis 99.7 2.5E-17 5.5E-22 131.6 11.9 129 26-178 6-134 (192)
15 PRK11036 putative S-adenosyl-L 99.7 1.9E-17 4.2E-22 139.9 10.5 117 48-180 34-152 (255)
16 TIGR00477 tehB tellurite resis 99.7 4.9E-17 1.1E-21 131.9 12.3 105 58-178 30-134 (195)
17 PRK00107 gidB 16S rRNA methylt 99.7 1.3E-16 2.9E-21 128.0 14.1 106 54-179 41-147 (187)
18 PLN02396 hexaprenyldihydroxybe 99.7 2.1E-17 4.5E-22 143.1 9.7 107 58-180 131-238 (322)
19 TIGR02752 MenG_heptapren 2-hep 99.7 1.1E-16 2.4E-21 133.2 13.2 112 56-182 43-156 (231)
20 COG2230 Cfa Cyclopropane fatty 99.7 6.3E-17 1.4E-21 135.8 11.1 114 54-183 68-182 (283)
21 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.4E-16 3E-21 134.0 12.3 113 51-178 49-165 (247)
22 PRK12335 tellurite resistance 99.7 1.6E-16 3.5E-21 136.5 12.7 104 58-177 120-223 (287)
23 PRK13256 thiopurine S-methyltr 99.7 3.6E-16 7.7E-21 128.4 13.3 141 24-179 7-165 (226)
24 PF13649 Methyltransf_25: Meth 99.7 5.9E-17 1.3E-21 117.5 7.5 96 62-171 1-101 (101)
25 PTZ00098 phosphoethanolamine N 99.7 3.6E-16 7.8E-21 132.6 12.7 118 48-180 41-159 (263)
26 PF05401 NodS: Nodulation prot 99.7 2.7E-16 5.8E-21 124.5 10.3 136 26-178 6-147 (201)
27 PRK10258 biotin biosynthesis p 99.7 4.2E-16 9.1E-21 131.4 11.2 103 58-181 42-144 (251)
28 PF05175 MTS: Methyltransferas 99.7 1.1E-15 2.4E-20 121.4 12.9 112 58-180 31-143 (170)
29 PRK11873 arsM arsenite S-adeno 99.7 5.9E-16 1.3E-20 132.0 11.9 110 55-179 74-185 (272)
30 TIGR03587 Pse_Me-ase pseudamin 99.7 8.4E-16 1.8E-20 125.4 11.6 105 55-180 40-145 (204)
31 TIGR00740 methyltransferase, p 99.7 1.6E-15 3.4E-20 127.0 12.9 109 55-178 50-162 (239)
32 PF02353 CMAS: Mycolic acid cy 99.7 9.1E-16 2E-20 130.2 11.3 108 55-179 59-168 (273)
33 PRK14103 trans-aconitate 2-met 99.7 5.2E-16 1.1E-20 131.1 9.8 99 57-178 28-127 (255)
34 PF05724 TPMT: Thiopurine S-me 99.6 6.3E-16 1.4E-20 127.0 9.1 139 25-178 2-156 (218)
35 TIGR00138 gidB 16S rRNA methyl 99.6 1.7E-15 3.7E-20 121.3 11.3 100 58-177 42-142 (181)
36 PF13489 Methyltransf_23: Meth 99.6 1.1E-15 2.3E-20 119.7 9.4 102 53-180 17-118 (161)
37 KOG2352 Predicted spermine/spe 99.6 2.3E-15 5.1E-20 133.2 12.5 201 16-222 3-208 (482)
38 KOG1270 Methyltransferases [Co 99.6 3.4E-16 7.4E-21 128.1 6.5 103 59-180 90-198 (282)
39 PRK15068 tRNA mo(5)U34 methylt 99.6 1.6E-15 3.4E-20 132.0 10.9 105 58-178 122-227 (322)
40 PF08242 Methyltransf_12: Meth 99.6 8.7E-17 1.9E-21 116.1 2.3 96 63-173 1-99 (99)
41 PLN02336 phosphoethanolamine N 99.6 2.8E-15 6.1E-20 137.5 12.7 109 56-180 264-372 (475)
42 PRK05785 hypothetical protein; 99.6 2.4E-15 5.1E-20 124.7 10.7 161 49-253 42-203 (226)
43 PRK14966 unknown domain/N5-glu 99.6 6.1E-15 1.3E-19 130.3 13.6 177 25-202 217-407 (423)
44 TIGR00452 methyltransferase, p 99.6 2.9E-15 6.3E-20 129.2 11.1 106 57-178 120-226 (314)
45 TIGR02072 BioC biotin biosynth 99.6 4.8E-15 1E-19 123.5 11.6 106 58-182 34-140 (240)
46 TIGR02469 CbiT precorrin-6Y C5 99.6 1.3E-14 2.8E-19 108.6 12.5 104 56-177 17-122 (124)
47 PRK01683 trans-aconitate 2-met 99.6 4.1E-15 9E-20 125.8 10.5 101 57-178 30-131 (258)
48 KOG4300 Predicted methyltransf 99.6 5E-15 1.1E-19 117.0 9.8 107 60-181 78-186 (252)
49 PF13659 Methyltransf_26: Meth 99.6 3.3E-15 7.1E-20 111.0 8.2 113 59-178 1-116 (117)
50 PRK06922 hypothetical protein; 99.6 6.2E-15 1.3E-19 135.9 11.6 118 58-178 418-538 (677)
51 PRK00121 trmB tRNA (guanine-N( 99.6 4.6E-15 9.9E-20 121.0 9.6 115 58-181 40-160 (202)
52 smart00828 PKS_MT Methyltransf 99.6 5.9E-15 1.3E-19 122.2 10.3 104 60-179 1-106 (224)
53 PRK15001 SAM-dependent 23S rib 99.6 1.7E-14 3.7E-19 127.2 13.2 117 51-178 219-341 (378)
54 PRK11088 rrmA 23S rRNA methylt 99.6 5.1E-15 1.1E-19 126.2 9.4 140 16-182 38-186 (272)
55 smart00138 MeTrc Methyltransfe 99.6 5.7E-15 1.2E-19 125.1 9.3 106 58-176 99-241 (264)
56 TIGR00537 hemK_rel_arch HemK-r 99.6 3.4E-14 7.3E-19 113.7 12.9 120 58-181 19-144 (179)
57 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.2E-14 2.7E-19 126.3 10.7 104 57-178 112-216 (340)
58 KOG2361 Predicted methyltransf 99.6 2E-14 4.4E-19 116.3 10.8 167 24-207 34-212 (264)
59 TIGR03534 RF_mod_PrmC protein- 99.6 2.8E-14 6.1E-19 120.0 11.9 135 58-193 87-234 (251)
60 TIGR03533 L3_gln_methyl protei 99.6 2E-14 4.4E-19 123.0 10.9 137 58-195 121-269 (284)
61 PRK08287 cobalt-precorrin-6Y C 99.6 6.6E-14 1.4E-18 112.8 13.3 103 56-178 29-132 (187)
62 TIGR00406 prmA ribosomal prote 99.6 5.4E-14 1.2E-18 120.8 13.2 111 50-180 151-262 (288)
63 COG2890 HemK Methylase of poly 99.6 6.5E-14 1.4E-18 119.4 13.3 140 61-202 113-265 (280)
64 TIGR00091 tRNA (guanine-N(7)-) 99.6 2.3E-14 5.1E-19 116.1 10.1 114 58-180 16-135 (194)
65 PRK08317 hypothetical protein; 99.6 4.2E-14 9E-19 117.7 11.8 108 56-179 17-126 (241)
66 TIGR02021 BchM-ChlM magnesium 99.6 6.2E-14 1.4E-18 115.8 12.3 133 26-175 14-156 (219)
67 PRK14967 putative methyltransf 99.5 8.2E-14 1.8E-18 115.4 12.8 122 56-179 34-161 (223)
68 PRK00216 ubiE ubiquinone/menaq 99.5 5.3E-14 1.1E-18 117.3 11.7 108 58-180 51-161 (239)
69 PRK11705 cyclopropane fatty ac 99.5 4.5E-14 9.7E-19 125.6 11.8 107 56-181 165-271 (383)
70 TIGR01177 conserved hypothetic 99.5 1.3E-13 2.9E-18 120.6 14.6 121 55-182 179-299 (329)
71 COG2813 RsmC 16S RNA G1207 met 99.5 6.8E-14 1.5E-18 117.9 12.2 111 59-181 159-270 (300)
72 COG4106 Tam Trans-aconitate me 99.5 1.1E-14 2.5E-19 115.9 7.0 101 57-178 29-130 (257)
73 PRK00517 prmA ribosomal protei 99.5 9.5E-14 2.1E-18 117.0 13.0 105 50-180 111-216 (250)
74 COG2264 PrmA Ribosomal protein 99.5 5.3E-14 1.2E-18 119.1 11.0 114 46-178 150-264 (300)
75 PRK09489 rsmC 16S ribosomal RN 99.5 9E-14 2E-18 121.7 12.8 108 59-179 197-305 (342)
76 COG2242 CobL Precorrin-6B meth 99.5 1.3E-13 2.8E-18 108.5 12.2 107 54-179 30-137 (187)
77 TIGR00080 pimt protein-L-isoas 99.5 1E-13 2.2E-18 114.2 12.3 101 56-177 75-177 (215)
78 TIGR00536 hemK_fam HemK family 99.5 1.5E-13 3.3E-18 117.8 13.9 129 60-189 116-257 (284)
79 TIGR02716 C20_methyl_CrtF C-20 99.5 8.5E-14 1.8E-18 120.7 12.2 108 56-179 147-256 (306)
80 PRK13942 protein-L-isoaspartat 99.5 8.8E-14 1.9E-18 114.3 11.7 100 56-176 74-175 (212)
81 PRK13944 protein-L-isoaspartat 99.5 1.6E-13 3.5E-18 112.2 13.1 101 56-177 70-173 (205)
82 PRK06202 hypothetical protein; 99.5 1.2E-13 2.7E-18 115.0 12.5 107 57-181 59-170 (232)
83 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.3E-13 2.8E-18 113.8 12.3 106 58-180 39-146 (223)
84 PF06325 PrmA: Ribosomal prote 99.5 6.9E-14 1.5E-18 119.4 10.5 112 47-179 150-261 (295)
85 PF08003 Methyltransf_9: Prote 99.5 9.7E-14 2.1E-18 116.9 10.9 122 40-179 97-221 (315)
86 COG4123 Predicted O-methyltran 99.5 7.7E-14 1.7E-18 115.2 9.8 120 58-177 44-170 (248)
87 TIGR03438 probable methyltrans 99.5 2.3E-13 4.9E-18 117.6 13.0 138 26-177 28-177 (301)
88 PRK01544 bifunctional N5-gluta 99.5 1.9E-13 4E-18 125.7 13.2 144 59-203 139-296 (506)
89 PLN03075 nicotianamine synthas 99.5 1.3E-13 2.9E-18 117.1 11.3 106 58-177 123-233 (296)
90 PRK11805 N5-glutamine S-adenos 99.5 1.6E-13 3.4E-18 118.7 11.9 117 60-177 135-263 (307)
91 PRK14121 tRNA (guanine-N(7)-)- 99.5 2.1E-13 4.6E-18 119.9 12.3 112 58-178 122-236 (390)
92 PLN02336 phosphoethanolamine N 99.5 1.9E-13 4.2E-18 125.4 11.8 105 58-178 37-143 (475)
93 PRK00312 pcm protein-L-isoaspa 99.5 9.8E-13 2.1E-17 108.1 14.7 101 56-178 76-176 (212)
94 PRK00377 cbiT cobalt-precorrin 99.5 5.5E-13 1.2E-17 108.5 12.9 106 55-178 37-146 (198)
95 PRK09328 N5-glutamine S-adenos 99.5 6.4E-13 1.4E-17 113.4 13.9 119 57-176 107-237 (275)
96 TIGR00446 nop2p NOL1/NOP2/sun 99.5 4.8E-13 1E-17 113.5 12.6 126 55-180 68-202 (264)
97 PRK14968 putative methyltransf 99.5 1E-12 2.2E-17 105.6 13.7 121 57-179 22-150 (188)
98 PRK04266 fibrillarin; Provisio 99.5 1.4E-12 3.1E-17 107.8 14.4 102 55-176 69-175 (226)
99 PRK07402 precorrin-6B methylas 99.5 8.1E-13 1.7E-17 107.3 12.6 105 57-180 39-145 (196)
100 PRK10901 16S rRNA methyltransf 99.5 1.3E-12 2.7E-17 118.3 15.0 123 56-179 242-374 (427)
101 TIGR01983 UbiG ubiquinone bios 99.5 3.5E-13 7.5E-18 111.5 10.5 107 58-180 45-152 (224)
102 PLN02232 ubiquinone biosynthes 99.5 1.2E-14 2.6E-19 114.2 1.3 140 85-258 1-143 (160)
103 PRK14904 16S rRNA methyltransf 99.5 1E-12 2.2E-17 119.4 13.9 124 56-180 248-380 (445)
104 COG2518 Pcm Protein-L-isoaspar 99.5 1E-12 2.2E-17 105.5 11.7 111 45-177 58-169 (209)
105 PF07021 MetW: Methionine bios 99.5 1.8E-13 4E-18 108.2 7.3 104 51-179 6-111 (193)
106 PRK14903 16S rRNA methyltransf 99.4 1.1E-12 2.3E-17 118.6 12.8 125 56-180 235-369 (431)
107 PRK14901 16S rRNA methyltransf 99.4 1.4E-12 3.1E-17 118.1 13.6 125 56-180 250-387 (434)
108 PF03291 Pox_MCEL: mRNA cappin 99.4 5.9E-13 1.3E-17 115.8 10.4 115 58-183 62-192 (331)
109 PRK07580 Mg-protoporphyrin IX 99.4 1.1E-12 2.4E-17 108.9 11.5 100 57-173 62-162 (230)
110 TIGR03704 PrmC_rel_meth putati 99.4 1.7E-12 3.6E-17 109.3 12.2 117 59-178 87-217 (251)
111 PRK14902 16S rRNA methyltransf 99.4 2.7E-12 5.9E-17 116.7 14.3 123 56-179 248-381 (444)
112 PRK11188 rrmJ 23S rRNA methylt 99.4 8E-13 1.7E-17 108.3 9.6 112 56-182 49-170 (209)
113 PRK05134 bifunctional 3-demeth 99.4 9.8E-13 2.1E-17 109.6 10.3 106 57-179 47-153 (233)
114 PLN02585 magnesium protoporphy 99.4 3.8E-12 8.2E-17 110.1 13.7 99 58-174 144-247 (315)
115 KOG1541 Predicted protein carb 99.4 2.7E-12 5.9E-17 102.6 11.7 112 59-180 51-163 (270)
116 TIGR00563 rsmB ribosomal RNA s 99.4 4.5E-12 9.8E-17 114.6 14.5 124 56-180 236-371 (426)
117 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.2E-11 2.5E-16 100.3 15.0 107 57-179 52-161 (199)
118 cd02440 AdoMet_MTases S-adenos 99.4 5.8E-12 1.2E-16 90.0 11.7 102 61-176 1-103 (107)
119 PRK15128 23S rRNA m(5)C1962 me 99.4 1.8E-12 3.8E-17 115.6 10.2 135 41-182 204-344 (396)
120 KOG1975 mRNA cap methyltransfe 99.4 1.1E-12 2.4E-17 110.3 8.1 125 51-186 110-246 (389)
121 TIGR02081 metW methionine bios 99.4 2.6E-12 5.6E-17 104.1 8.7 93 55-169 10-104 (194)
122 PRK11783 rlmL 23S rRNA m(2)G24 99.4 4.3E-12 9.3E-17 121.2 11.5 135 41-180 522-659 (702)
123 PF01135 PCMT: Protein-L-isoas 99.4 3.7E-12 8E-17 103.9 9.5 100 56-176 70-171 (209)
124 TIGR00438 rrmJ cell division p 99.3 6.5E-12 1.4E-16 101.3 9.9 110 55-180 29-149 (188)
125 PRK13943 protein-L-isoaspartat 99.3 1E-11 2.2E-16 107.6 11.6 101 56-177 78-180 (322)
126 PHA03411 putative methyltransf 99.3 2.1E-11 4.5E-16 102.3 12.7 119 58-182 64-188 (279)
127 COG2263 Predicted RNA methylas 99.3 1.5E-11 3.2E-16 96.6 10.1 77 58-138 45-121 (198)
128 PLN02781 Probable caffeoyl-CoA 99.3 1.8E-11 3.9E-16 102.0 10.1 102 57-176 67-177 (234)
129 smart00650 rADc Ribosomal RNA 99.3 3.1E-11 6.7E-16 95.7 11.1 78 56-136 11-88 (169)
130 COG1041 Predicted DNA modifica 99.3 8.2E-11 1.8E-15 101.1 14.1 126 46-178 183-311 (347)
131 KOG3010 Methyltransferase [Gen 99.3 6.3E-12 1.4E-16 102.0 6.8 104 59-179 34-139 (261)
132 PF02390 Methyltransf_4: Putat 99.3 1.8E-11 4E-16 99.0 9.6 110 61-179 20-135 (195)
133 PLN02672 methionine S-methyltr 99.3 2.4E-11 5.1E-16 118.8 11.7 143 59-201 119-304 (1082)
134 PTZ00146 fibrillarin; Provisio 99.3 4.8E-11 1E-15 101.2 12.0 118 40-176 109-236 (293)
135 PHA03412 putative methyltransf 99.3 5.2E-11 1.1E-15 97.8 11.7 106 58-172 49-158 (241)
136 COG2519 GCD14 tRNA(1-methylade 99.3 2.3E-11 4.9E-16 100.0 9.4 111 54-185 90-203 (256)
137 PF00891 Methyltransf_2: O-met 99.3 4.1E-11 8.9E-16 100.4 10.4 100 57-179 99-201 (241)
138 PRK00811 spermidine synthase; 99.3 5.2E-11 1.1E-15 102.0 11.0 109 57-176 75-190 (283)
139 COG0220 Predicted S-adenosylme 99.3 2.1E-11 4.6E-16 100.4 8.1 110 60-178 50-165 (227)
140 COG1092 Predicted SAM-dependen 99.2 5.8E-11 1.3E-15 104.8 11.4 135 41-182 201-341 (393)
141 PF06080 DUF938: Protein of un 99.2 4.1E-11 8.9E-16 96.2 9.5 120 46-178 12-142 (204)
142 KOG3191 Predicted N6-DNA-methy 99.2 2.8E-10 6.1E-15 88.5 13.7 148 59-210 44-204 (209)
143 PRK04457 spermidine synthase; 99.2 6.3E-11 1.4E-15 100.4 10.6 113 57-180 65-180 (262)
144 PRK13168 rumA 23S rRNA m(5)U19 99.2 8.7E-11 1.9E-15 106.9 10.8 101 57-177 296-400 (443)
145 COG4122 Predicted O-methyltran 99.2 7.5E-11 1.6E-15 96.1 9.2 104 56-177 57-166 (219)
146 KOG1499 Protein arginine N-met 99.2 6.1E-11 1.3E-15 101.5 7.8 106 56-174 58-164 (346)
147 PF01596 Methyltransf_3: O-met 99.2 9.4E-11 2E-15 95.4 8.5 102 58-177 45-155 (205)
148 PRK03522 rumB 23S rRNA methylu 99.2 1.2E-10 2.5E-15 101.4 9.0 76 58-134 173-249 (315)
149 PF03602 Cons_hypoth95: Conser 99.2 4.4E-10 9.5E-15 90.0 11.4 118 48-180 32-156 (183)
150 KOG2899 Predicted methyltransf 99.2 2.7E-10 5.9E-15 92.5 9.8 110 56-176 56-208 (288)
151 PF08704 GCD14: tRNA methyltra 99.1 2E-10 4.4E-15 95.7 9.1 134 26-182 10-151 (247)
152 PLN02476 O-methyltransferase 99.1 2.9E-10 6.3E-15 96.2 10.0 102 57-176 117-227 (278)
153 PF05891 Methyltransf_PK: AdoM 99.1 2.3E-10 5E-15 92.4 8.9 106 59-177 56-161 (218)
154 PF01170 UPF0020: Putative RNA 99.1 2E-10 4.3E-15 91.8 8.6 108 56-170 26-144 (179)
155 TIGR00095 RNA methyltransferas 99.1 2.5E-09 5.4E-14 86.2 15.0 105 58-178 49-160 (189)
156 PF10672 Methyltrans_SAM: S-ad 99.1 4.1E-10 8.8E-15 95.8 10.7 135 39-183 105-244 (286)
157 COG4976 Predicted methyltransf 99.1 2.3E-11 5E-16 97.9 2.3 99 58-177 125-225 (287)
158 TIGR00417 speE spermidine synt 99.1 4.6E-10 1E-14 95.6 10.2 110 57-177 71-186 (270)
159 PRK11933 yebU rRNA (cytosine-C 99.1 8E-10 1.7E-14 100.4 12.0 125 55-179 110-244 (470)
160 PF05148 Methyltransf_8: Hypot 99.1 2.3E-10 4.9E-15 91.6 7.4 154 29-216 44-199 (219)
161 COG3963 Phospholipid N-methylt 99.1 2.4E-09 5.1E-14 82.4 12.5 116 47-180 35-159 (194)
162 PF01739 CheR: CheR methyltran 99.1 4.3E-10 9.4E-15 90.8 9.0 106 58-176 31-174 (196)
163 KOG2904 Predicted methyltransf 99.1 1.2E-09 2.6E-14 90.3 11.5 119 58-178 148-286 (328)
164 PLN02366 spermidine synthase 99.1 1.1E-09 2.4E-14 94.5 11.8 110 56-176 89-205 (308)
165 PRK01581 speE spermidine synth 99.1 3.9E-10 8.5E-15 98.2 9.0 112 56-177 148-268 (374)
166 PF10294 Methyltransf_16: Puta 99.1 5.4E-10 1.2E-14 88.9 8.3 107 56-178 43-157 (173)
167 PF05219 DREV: DREV methyltran 99.1 5.7E-10 1.2E-14 92.2 7.9 94 58-176 94-187 (265)
168 COG0144 Sun tRNA and rRNA cyto 99.0 6.4E-09 1.4E-13 91.7 14.5 126 55-180 153-291 (355)
169 PF04816 DUF633: Family of unk 99.0 4.6E-09 1E-13 85.4 12.4 142 62-220 1-144 (205)
170 TIGR02085 meth_trns_rumB 23S r 99.0 1.3E-09 2.8E-14 97.0 10.0 101 58-177 233-334 (374)
171 TIGR00479 rumA 23S rRNA (uraci 99.0 8.2E-10 1.8E-14 100.2 8.5 101 57-176 291-395 (431)
172 PF02475 Met_10: Met-10+ like- 99.0 1.8E-09 3.8E-14 87.4 9.1 102 53-174 96-199 (200)
173 PLN02589 caffeoyl-CoA O-methyl 99.0 1.8E-09 4E-14 90.2 9.4 101 58-176 79-189 (247)
174 KOG3420 Predicted RNA methylas 99.0 5.3E-10 1.1E-14 83.9 5.0 79 58-137 48-126 (185)
175 PRK03612 spermidine synthase; 99.0 2.2E-09 4.8E-14 99.4 9.4 111 57-177 296-415 (521)
176 COG0742 N6-adenine-specific me 99.0 4E-08 8.6E-13 77.9 14.9 118 48-179 33-156 (187)
177 PRK00274 ksgA 16S ribosomal RN 99.0 2.6E-09 5.7E-14 91.1 8.7 77 56-136 40-116 (272)
178 PRK14896 ksgA 16S ribosomal RN 99.0 5.6E-09 1.2E-13 88.4 10.4 76 56-136 27-102 (258)
179 PRK10611 chemotaxis methyltran 98.9 2.8E-09 6.1E-14 90.9 8.4 105 59-176 116-261 (287)
180 PF05185 PRMT5: PRMT5 arginine 98.9 3.8E-09 8.2E-14 95.6 8.8 102 59-174 187-294 (448)
181 PRK01544 bifunctional N5-gluta 98.9 5.2E-09 1.1E-13 96.5 9.8 112 58-178 347-463 (506)
182 KOG3045 Predicted RNA methylas 98.9 3.4E-09 7.3E-14 87.0 7.4 101 44-180 167-267 (325)
183 PRK11727 23S rRNA mA1618 methy 98.9 8E-09 1.7E-13 89.4 10.1 81 58-138 114-202 (321)
184 PF12147 Methyltransf_20: Puta 98.9 1.6E-08 3.6E-13 84.7 11.5 108 58-177 135-249 (311)
185 PF02527 GidB: rRNA small subu 98.9 9.8E-09 2.1E-13 82.1 9.5 102 55-176 44-147 (184)
186 PTZ00338 dimethyladenosine tra 98.9 8.6E-09 1.9E-13 88.6 9.7 79 56-137 34-113 (294)
187 KOG1500 Protein arginine N-met 98.9 9.2E-09 2E-13 87.4 9.1 102 58-174 177-279 (517)
188 COG1352 CheR Methylase of chem 98.9 2.8E-08 6.1E-13 83.8 11.5 106 58-176 96-240 (268)
189 PLN02823 spermine synthase 98.9 1.4E-08 3.1E-13 88.6 10.1 111 57-176 102-219 (336)
190 TIGR00755 ksgA dimethyladenosi 98.9 3.6E-08 7.9E-13 83.2 12.3 76 56-136 27-105 (253)
191 PRK04338 N(2),N(2)-dimethylgua 98.8 9.3E-09 2E-13 91.4 8.3 99 59-176 58-157 (382)
192 COG2520 Predicted methyltransf 98.8 3.1E-08 6.8E-13 85.9 11.2 109 55-182 185-294 (341)
193 KOG1661 Protein-L-isoaspartate 98.8 1.7E-08 3.7E-13 80.5 8.3 109 47-176 71-192 (237)
194 TIGR02143 trmA_only tRNA (urac 98.8 1.5E-08 3.3E-13 89.4 8.5 59 59-118 198-256 (353)
195 PRK05031 tRNA (uracil-5-)-meth 98.8 1.8E-08 3.9E-13 89.3 8.5 75 59-134 207-297 (362)
196 TIGR03439 methyl_EasF probable 98.8 1.1E-07 2.3E-12 82.4 12.8 138 26-176 41-196 (319)
197 TIGR00478 tly hemolysin TlyA f 98.8 1.7E-08 3.8E-13 83.3 7.0 89 58-176 75-170 (228)
198 PRK04148 hypothetical protein; 98.8 1.4E-07 3E-12 71.0 11.1 95 58-180 16-112 (134)
199 COG2521 Predicted archaeal met 98.8 1.3E-08 2.8E-13 82.5 5.4 111 56-178 132-246 (287)
200 KOG1331 Predicted methyltransf 98.7 1.4E-08 2.9E-13 84.8 4.6 131 26-180 11-146 (293)
201 COG0116 Predicted N6-adenine-s 98.7 2E-07 4.4E-12 81.5 11.9 115 57-179 190-346 (381)
202 KOG2940 Predicted methyltransf 98.7 1.8E-08 3.9E-13 81.4 4.2 105 57-178 71-175 (325)
203 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 3.8E-08 8.2E-13 84.3 5.8 124 56-179 83-221 (283)
204 KOG1663 O-methyltransferase [S 98.7 3.2E-07 7E-12 74.5 10.7 101 58-176 73-182 (237)
205 TIGR00308 TRM1 tRNA(guanine-26 98.7 1.1E-07 2.3E-12 84.3 8.7 98 60-176 46-146 (374)
206 PF09445 Methyltransf_15: RNA 98.6 4.5E-08 9.8E-13 76.3 5.5 74 61-135 2-79 (163)
207 KOG2915 tRNA(1-methyladenosine 98.6 5.9E-07 1.3E-11 74.5 11.7 125 26-172 75-204 (314)
208 KOG0820 Ribosomal RNA adenine 98.6 1.7E-07 3.8E-12 77.6 8.4 80 54-136 54-134 (315)
209 COG2384 Predicted SAM-dependen 98.6 7.2E-07 1.6E-11 72.0 11.8 148 54-218 12-161 (226)
210 COG0357 GidB Predicted S-adeno 98.6 2.7E-07 5.9E-12 75.2 9.4 98 59-176 68-167 (215)
211 COG0030 KsgA Dimethyladenosine 98.6 7.7E-07 1.7E-11 74.4 12.2 79 56-137 28-107 (259)
212 COG0421 SpeE Spermidine syntha 98.6 1.7E-07 3.7E-12 79.8 8.3 106 60-176 78-189 (282)
213 PRK11783 rlmL 23S rRNA m(2)G24 98.6 3.1E-07 6.7E-12 88.1 10.7 113 57-180 189-350 (702)
214 PF02384 N6_Mtase: N-6 DNA Met 98.6 3.4E-07 7.4E-12 79.6 9.2 133 46-178 32-184 (311)
215 COG2265 TrmA SAM-dependent met 98.5 2.4E-07 5.2E-12 83.5 8.1 75 58-133 293-370 (432)
216 PRK00536 speE spermidine synth 98.5 1E-06 2.2E-11 74.3 10.7 96 57-176 71-170 (262)
217 PF07942 N2227: N2227-like pro 98.5 5.3E-07 1.2E-11 76.0 9.0 104 59-178 57-203 (270)
218 PF01564 Spermine_synth: Sperm 98.5 2.4E-07 5.2E-12 77.8 6.6 111 56-177 74-191 (246)
219 COG3897 Predicted methyltransf 98.5 6.9E-07 1.5E-11 70.7 8.3 108 57-183 78-185 (218)
220 PF05958 tRNA_U5-meth_tr: tRNA 98.5 5.4E-07 1.2E-11 79.6 8.7 58 60-118 198-255 (352)
221 TIGR02987 met_A_Alw26 type II 98.5 1E-06 2.2E-11 82.1 10.0 81 58-138 31-125 (524)
222 PF09243 Rsm22: Mitochondrial 98.4 1E-06 2.3E-11 75.1 8.8 109 58-181 33-143 (274)
223 PF03141 Methyltransf_29: Puta 98.4 9.9E-08 2.1E-12 85.6 2.5 99 60-178 119-220 (506)
224 KOG3178 Hydroxyindole-O-methyl 98.4 1.7E-06 3.6E-11 74.6 9.7 102 59-181 178-279 (342)
225 KOG1122 tRNA and rRNA cytosine 98.4 2.2E-06 4.9E-11 75.2 10.3 124 56-180 239-374 (460)
226 KOG1269 SAM-dependent methyltr 98.4 4.3E-07 9.3E-12 79.9 5.8 112 52-178 104-216 (364)
227 KOG2730 Methylase [General fun 98.4 3.1E-07 6.7E-12 73.9 4.0 76 58-134 94-174 (263)
228 COG4076 Predicted RNA methylas 98.4 4.2E-07 9.1E-12 71.4 4.6 99 60-174 34-132 (252)
229 PF01728 FtsJ: FtsJ-like methy 98.4 4.4E-07 9.5E-12 72.6 4.3 111 58-183 23-145 (181)
230 PRK00050 16S rRNA m(4)C1402 me 98.3 1.2E-06 2.6E-11 75.1 6.5 74 57-132 18-97 (296)
231 PF01269 Fibrillarin: Fibrilla 98.3 1.5E-05 3.3E-10 64.8 11.9 119 40-177 50-178 (229)
232 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 4.8E-06 1E-10 69.9 9.2 111 57-178 55-200 (256)
233 COG0293 FtsJ 23S rRNA methylas 98.3 8.2E-06 1.8E-10 65.8 9.9 114 54-182 41-164 (205)
234 COG0500 SmtA SAM-dependent met 98.3 1.4E-05 3E-10 60.7 10.7 103 62-181 52-159 (257)
235 PF08123 DOT1: Histone methyla 98.3 2.7E-06 5.8E-11 69.3 6.8 105 56-176 40-157 (205)
236 COG1889 NOP1 Fibrillarin-like 98.1 5.4E-05 1.2E-09 60.5 11.7 121 37-176 50-179 (231)
237 PF00398 RrnaAD: Ribosomal RNA 98.1 2.2E-05 4.7E-10 66.6 10.2 76 57-135 29-107 (262)
238 TIGR01444 fkbM_fam methyltrans 98.1 8.6E-06 1.9E-10 62.3 6.8 58 61-118 1-59 (143)
239 PF03059 NAS: Nicotianamine sy 98.1 1.4E-05 3E-10 67.7 8.3 104 59-176 121-229 (276)
240 PF11968 DUF3321: Putative met 98.1 1.8E-05 3.9E-10 64.1 8.0 93 59-180 52-152 (219)
241 KOG3987 Uncharacterized conser 98.0 6.7E-07 1.5E-11 71.4 -0.8 94 58-176 112-206 (288)
242 KOG2187 tRNA uracil-5-methyltr 98.0 5.7E-06 1.2E-10 74.5 4.6 62 56-118 381-442 (534)
243 KOG3115 Methyltransferase-like 98.0 2.1E-05 4.5E-10 62.8 7.0 111 58-177 60-183 (249)
244 PRK11760 putative 23S rRNA C24 97.9 3.5E-05 7.5E-10 66.8 7.6 88 56-170 209-296 (357)
245 PF13578 Methyltransf_24: Meth 97.9 8.7E-06 1.9E-10 59.1 3.2 98 63-177 1-105 (106)
246 KOG1709 Guanidinoacetate methy 97.9 0.00013 2.8E-09 58.9 9.9 106 55-176 98-205 (271)
247 KOG2198 tRNA cytosine-5-methyl 97.9 0.00012 2.6E-09 63.6 9.8 136 48-183 145-302 (375)
248 PF01861 DUF43: Protein of unk 97.9 0.00047 1E-08 56.9 12.8 114 51-182 37-153 (243)
249 KOG3201 Uncharacterized conser 97.9 6.3E-06 1.4E-10 63.3 1.7 117 58-189 29-152 (201)
250 PF05971 Methyltransf_10: Prot 97.9 6.9E-05 1.5E-09 64.1 8.1 79 59-138 103-190 (299)
251 PRK10742 putative methyltransf 97.9 5.3E-05 1.1E-09 63.0 7.1 81 56-137 84-176 (250)
252 PF07091 FmrO: Ribosomal RNA m 97.8 0.00038 8.2E-09 57.8 11.5 92 43-136 90-182 (251)
253 PF06962 rRNA_methylase: Putat 97.8 0.00024 5.1E-09 54.0 9.5 91 83-179 1-94 (140)
254 PF13679 Methyltransf_32: Meth 97.8 0.00021 4.5E-09 54.8 8.9 77 57-138 24-109 (141)
255 KOG2798 Putative trehalase [Ca 97.7 0.00019 4.1E-09 61.0 8.4 117 46-178 132-297 (369)
256 KOG4589 Cell division protein 97.7 0.00034 7.3E-09 55.3 9.2 111 55-180 66-187 (232)
257 KOG4058 Uncharacterized conser 97.7 0.00044 9.6E-09 52.5 9.1 106 57-182 71-177 (199)
258 COG1189 Predicted rRNA methyla 97.7 0.00029 6.2E-09 57.9 8.7 96 57-176 78-177 (245)
259 COG4262 Predicted spermidine s 97.6 0.00026 5.7E-09 61.5 7.9 111 57-177 288-407 (508)
260 PF04672 Methyltransf_19: S-ad 97.6 0.00027 5.9E-09 59.4 7.7 108 60-179 70-192 (267)
261 COG5459 Predicted rRNA methyla 97.6 0.00013 2.9E-09 62.9 5.8 110 58-181 113-229 (484)
262 TIGR00006 S-adenosyl-methyltra 97.5 0.00041 8.8E-09 59.8 8.0 75 57-132 19-99 (305)
263 KOG0024 Sorbitol dehydrogenase 97.5 0.00036 7.7E-09 59.8 7.3 109 55-188 166-284 (354)
264 COG0286 HsdM Type I restrictio 97.5 0.001 2.2E-08 61.4 10.6 135 46-180 172-329 (489)
265 PF11599 AviRa: RRNA methyltra 97.5 0.0017 3.6E-08 52.6 10.1 120 58-183 51-220 (246)
266 COG4798 Predicted methyltransf 97.4 0.00064 1.4E-08 54.1 7.3 117 54-179 44-168 (238)
267 KOG1596 Fibrillarin and relate 97.4 0.0011 2.5E-08 54.4 8.7 118 41-177 134-261 (317)
268 PHA01634 hypothetical protein 97.3 0.0014 3.1E-08 48.5 7.4 70 58-130 28-97 (156)
269 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0012 2.7E-08 58.8 7.3 101 58-177 49-154 (377)
270 KOG2671 Putative RNA methylase 97.2 0.0011 2.4E-08 57.1 6.5 122 55-177 205-354 (421)
271 PRK11524 putative methyltransf 97.1 0.0011 2.5E-08 56.8 6.1 55 47-102 197-251 (284)
272 COG1063 Tdh Threonine dehydrog 97.1 0.00087 1.9E-08 59.3 5.3 102 57-182 167-274 (350)
273 PF01555 N6_N4_Mtase: DNA meth 97.0 0.0013 2.8E-08 54.0 5.1 53 46-99 179-231 (231)
274 KOG1501 Arginine N-methyltrans 97.0 0.0012 2.7E-08 58.6 4.9 57 60-116 68-125 (636)
275 COG1064 AdhP Zn-dependent alco 97.0 0.0028 6.1E-08 55.3 7.1 97 54-179 162-261 (339)
276 PRK13699 putative methylase; P 96.9 0.0029 6.3E-08 52.5 6.4 56 48-104 153-208 (227)
277 PF04445 SAM_MT: Putative SAM- 96.9 0.0028 6.1E-08 52.4 6.2 77 60-137 77-163 (234)
278 cd00315 Cyt_C5_DNA_methylase C 96.8 0.0031 6.8E-08 53.9 6.3 68 61-134 2-71 (275)
279 PF04989 CmcI: Cephalosporin h 96.8 0.0035 7.6E-08 50.8 6.1 102 58-177 32-147 (206)
280 KOG1562 Spermidine synthase [A 96.8 0.0039 8.5E-08 52.9 6.4 120 47-177 110-236 (337)
281 PRK09880 L-idonate 5-dehydroge 96.7 0.0051 1.1E-07 54.1 7.1 98 57-179 168-268 (343)
282 COG3129 Predicted SAM-dependen 96.7 0.0062 1.3E-07 49.9 6.7 80 58-138 78-166 (292)
283 KOG1099 SAM-dependent methyltr 96.7 0.0023 4.9E-08 52.3 4.0 104 58-176 41-162 (294)
284 PF03141 Methyltransf_29: Puta 96.5 0.0025 5.4E-08 57.8 3.6 99 60-178 367-468 (506)
285 PRK09424 pntA NAD(P) transhydr 96.5 0.019 4E-07 53.2 9.1 103 57-179 163-287 (509)
286 KOG2793 Putative N2,N2-dimethy 96.4 0.022 4.8E-07 47.6 8.5 104 59-178 87-200 (248)
287 COG1867 TRM1 N2,N2-dimethylgua 96.4 0.0083 1.8E-07 52.5 6.1 99 59-176 53-153 (380)
288 KOG0822 Protein kinase inhibit 96.2 0.0086 1.9E-07 54.6 5.5 101 59-175 368-476 (649)
289 COG4627 Uncharacterized protei 96.2 0.0013 2.9E-08 50.4 0.2 58 109-179 31-88 (185)
290 PF07757 AdoMet_MTase: Predict 96.2 0.0035 7.5E-08 45.1 2.2 32 58-90 58-89 (112)
291 PF06859 Bin3: Bicoid-interact 96.2 0.0028 6E-08 45.9 1.7 43 125-176 1-43 (110)
292 PF01795 Methyltransf_5: MraW 96.0 0.014 3.1E-07 50.4 5.6 76 56-132 18-100 (310)
293 PF11312 DUF3115: Protein of u 96.0 0.01 2.2E-07 51.0 4.6 109 60-178 88-243 (315)
294 PF03492 Methyltransf_7: SAM d 96.0 0.06 1.3E-06 47.4 9.5 127 56-182 14-188 (334)
295 PLN02668 indole-3-acetate carb 95.9 0.12 2.6E-06 46.1 11.2 124 59-182 64-242 (386)
296 PF03269 DUF268: Caenorhabditi 95.9 0.0062 1.4E-07 47.1 2.6 108 59-178 2-112 (177)
297 COG0275 Predicted S-adenosylme 95.9 0.049 1.1E-06 46.6 8.2 74 57-131 22-102 (314)
298 COG1568 Predicted methyltransf 95.8 0.068 1.5E-06 45.1 8.6 102 58-177 152-260 (354)
299 cd08230 glucose_DH Glucose deh 95.8 0.027 5.9E-07 49.7 6.9 96 57-179 171-271 (355)
300 COG4301 Uncharacterized conser 95.6 0.3 6.5E-06 40.7 11.4 105 58-176 78-192 (321)
301 PF00145 DNA_methylase: C-5 cy 95.6 0.021 4.6E-07 49.6 5.2 66 61-134 2-70 (335)
302 cd08237 ribitol-5-phosphate_DH 95.5 0.047 1E-06 48.0 7.2 95 56-179 161-258 (341)
303 KOG1227 Putative methyltransfe 95.5 0.0077 1.7E-07 51.2 1.9 73 58-131 194-268 (351)
304 KOG2920 Predicted methyltransf 95.5 0.013 2.8E-07 49.5 3.2 39 57-95 115-153 (282)
305 KOG2078 tRNA modification enzy 95.3 0.025 5.5E-07 50.3 4.4 66 52-118 243-310 (495)
306 KOG1253 tRNA methyltransferase 95.3 0.012 2.5E-07 53.4 2.3 101 58-177 109-216 (525)
307 TIGR01202 bchC 2-desacetyl-2-h 95.1 0.058 1.3E-06 46.7 6.1 89 57-179 143-233 (308)
308 PTZ00357 methyltransferase; Pr 95.0 0.085 1.8E-06 50.0 7.1 98 60-172 702-830 (1072)
309 TIGR00497 hsdM type I restrict 94.9 0.26 5.5E-06 45.9 10.3 121 58-178 217-356 (501)
310 TIGR00561 pntA NAD(P) transhyd 94.7 0.091 2E-06 48.7 6.5 100 58-180 163-287 (511)
311 cd08281 liver_ADH_like1 Zinc-d 94.7 0.054 1.2E-06 48.1 5.0 99 55-178 188-291 (371)
312 PRK11524 putative methyltransf 94.5 0.073 1.6E-06 45.7 5.2 69 108-177 8-80 (284)
313 PF02636 Methyltransf_28: Puta 94.3 0.089 1.9E-06 44.3 5.3 45 59-103 19-72 (252)
314 cd08283 FDH_like_1 Glutathione 94.3 0.22 4.7E-06 44.6 8.1 117 55-178 181-307 (386)
315 TIGR03451 mycoS_dep_FDH mycoth 94.3 0.049 1.1E-06 48.1 3.8 99 55-178 173-277 (358)
316 TIGR02822 adh_fam_2 zinc-bindi 94.2 0.53 1.1E-05 41.1 10.2 92 55-178 162-255 (329)
317 cd08254 hydroxyacyl_CoA_DH 6-h 94.1 0.54 1.2E-05 40.7 10.0 98 56-179 163-265 (338)
318 TIGR00675 dcm DNA-methyltransf 94.1 0.087 1.9E-06 45.9 4.9 67 62-134 1-68 (315)
319 PF05711 TylF: Macrocin-O-meth 93.9 0.33 7.2E-06 40.7 7.7 108 58-182 74-217 (248)
320 KOG2352 Predicted spermine/spe 93.7 0.19 4.1E-06 45.8 6.4 115 58-178 295-417 (482)
321 PF00107 ADH_zinc_N: Zinc-bind 93.7 0.12 2.7E-06 38.2 4.5 85 69-180 2-92 (130)
322 PF10237 N6-adenineMlase: Prob 93.6 0.89 1.9E-05 35.6 9.2 106 46-179 13-125 (162)
323 PRK13699 putative methylase; P 93.5 0.15 3.3E-06 42.3 5.1 66 110-176 3-71 (227)
324 TIGR03366 HpnZ_proposed putati 93.5 0.11 2.4E-06 44.2 4.5 96 57-178 119-219 (280)
325 COG1062 AdhC Zn-dependent alco 93.5 0.43 9.3E-06 41.7 7.9 102 55-183 182-291 (366)
326 COG0270 Dcm Site-specific DNA 93.5 0.2 4.4E-06 43.9 6.2 71 59-134 3-76 (328)
327 PRK10309 galactitol-1-phosphat 93.4 0.13 2.9E-06 45.1 4.9 100 55-179 157-262 (347)
328 COG3510 CmcI Cephalosporin hyd 93.3 0.42 9.1E-06 38.3 6.9 101 58-178 69-181 (237)
329 cd00401 AdoHcyase S-adenosyl-L 93.2 0.21 4.5E-06 45.2 5.8 89 57-179 200-291 (413)
330 cd08239 THR_DH_like L-threonin 93.1 0.2 4.4E-06 43.7 5.5 98 56-178 161-263 (339)
331 PLN02827 Alcohol dehydrogenase 92.9 0.2 4.4E-06 44.7 5.4 99 55-178 190-296 (378)
332 PF02737 3HCDH_N: 3-hydroxyacy 92.9 0.82 1.8E-05 36.4 8.3 98 61-180 1-117 (180)
333 COG0686 Ald Alanine dehydrogen 92.8 0.45 9.7E-06 41.1 6.9 107 58-183 167-274 (371)
334 COG1565 Uncharacterized conser 92.7 0.35 7.6E-06 42.5 6.2 47 58-104 77-132 (370)
335 PF10354 DUF2431: Domain of un 92.4 0.76 1.6E-05 36.1 7.4 114 65-180 3-128 (166)
336 cd05188 MDR Medium chain reduc 92.3 0.51 1.1E-05 39.1 6.8 95 57-178 133-233 (271)
337 PRK10458 DNA cytosine methylas 92.2 0.45 9.9E-06 43.7 6.8 59 59-119 88-146 (467)
338 PLN02740 Alcohol dehydrogenase 92.1 0.56 1.2E-05 41.9 7.2 99 55-178 195-301 (381)
339 COG1255 Uncharacterized protei 92.1 3.6 7.8E-05 30.2 11.2 85 60-176 15-101 (129)
340 PLN03154 putative allyl alcoho 92.0 0.76 1.6E-05 40.5 7.8 98 55-178 155-259 (348)
341 KOG0022 Alcohol dehydrogenase, 91.8 0.81 1.8E-05 39.6 7.3 99 55-180 189-297 (375)
342 TIGR00027 mthyl_TIGR00027 meth 91.8 3.1 6.7E-05 35.2 11.0 106 59-179 82-199 (260)
343 cd08238 sorbose_phosphate_red 91.7 0.68 1.5E-05 41.8 7.3 45 56-100 173-222 (410)
344 PLN02586 probable cinnamyl alc 91.5 0.42 9.1E-06 42.3 5.6 96 56-178 181-279 (360)
345 TIGR03201 dearomat_had 6-hydro 91.4 0.5 1.1E-05 41.6 6.0 44 55-99 163-208 (349)
346 PF11899 DUF3419: Protein of u 91.3 0.47 1E-05 42.5 5.6 64 106-182 274-339 (380)
347 cd08285 NADP_ADH NADP(H)-depen 91.2 1 2.2E-05 39.4 7.8 99 55-178 163-267 (351)
348 PF02254 TrkA_N: TrkA-N domain 91.2 3 6.5E-05 30.1 9.1 89 67-180 4-99 (116)
349 COG0287 TyrA Prephenate dehydr 91.0 1 2.2E-05 38.6 7.3 90 60-176 4-97 (279)
350 PRK05708 2-dehydropantoate 2-r 91.0 2.3 4.9E-05 36.9 9.6 100 60-179 3-106 (305)
351 TIGR02818 adh_III_F_hyde S-(hy 90.9 0.83 1.8E-05 40.5 7.0 99 55-178 182-288 (368)
352 cd08232 idonate-5-DH L-idonate 90.8 1.3 2.8E-05 38.5 7.9 94 58-178 165-263 (339)
353 COG0863 DNA modification methy 90.7 0.74 1.6E-05 39.4 6.3 57 47-104 211-267 (302)
354 TIGR02819 fdhA_non_GSH formald 90.6 1.2 2.7E-05 40.0 7.8 112 55-179 182-301 (393)
355 PRK09260 3-hydroxybutyryl-CoA 90.6 1.2 2.6E-05 38.1 7.5 95 61-176 3-116 (288)
356 PRK07819 3-hydroxybutyryl-CoA 90.5 1.7 3.8E-05 37.3 8.3 98 60-179 6-123 (286)
357 TIGR02825 B4_12hDH leukotriene 90.3 1.7 3.7E-05 37.6 8.3 97 55-178 135-238 (325)
358 cd08277 liver_alcohol_DH_like 90.0 1.1 2.3E-05 39.8 6.8 99 55-178 181-287 (365)
359 cd08300 alcohol_DH_class_III c 89.8 0.79 1.7E-05 40.6 5.9 100 55-179 183-290 (368)
360 KOG2539 Mitochondrial/chloropl 89.8 2.2 4.7E-05 38.9 8.4 112 58-181 200-319 (491)
361 PRK08293 3-hydroxybutyryl-CoA 89.7 2.5 5.4E-05 36.2 8.7 95 60-175 4-118 (287)
362 cd08255 2-desacetyl-2-hydroxye 89.6 1.5 3.2E-05 36.9 7.1 96 55-178 94-191 (277)
363 PRK07066 3-hydroxybutyryl-CoA 89.6 1.8 3.9E-05 37.8 7.7 96 60-176 8-118 (321)
364 PRK10083 putative oxidoreducta 89.6 0.99 2.1E-05 39.2 6.2 100 55-179 157-261 (339)
365 KOG2912 Predicted DNA methylas 89.4 0.85 1.8E-05 39.5 5.3 74 63-136 107-189 (419)
366 PRK07530 3-hydroxybutyryl-CoA 89.3 4.2 9.1E-05 34.8 9.8 96 60-177 5-119 (292)
367 PLN02514 cinnamyl-alcohol dehy 89.1 1.2 2.7E-05 39.2 6.5 96 57-178 179-276 (357)
368 PRK07417 arogenate dehydrogena 88.9 2.1 4.6E-05 36.5 7.6 85 61-174 2-88 (279)
369 PRK05808 3-hydroxybutyryl-CoA 88.9 3.6 7.8E-05 35.1 9.0 96 61-178 5-119 (282)
370 PRK15001 SAM-dependent 23S rib 88.8 7 0.00015 35.1 11.0 114 40-177 27-142 (378)
371 cd08234 threonine_DH_like L-th 88.8 2.1 4.5E-05 37.0 7.7 98 55-179 156-259 (334)
372 COG2933 Predicted SAM-dependen 88.8 1.6 3.4E-05 36.9 6.4 72 55-134 208-279 (358)
373 cd08294 leukotriene_B4_DH_like 88.8 1.8 3.9E-05 37.3 7.3 96 55-177 140-241 (329)
374 PRK06035 3-hydroxyacyl-CoA deh 88.7 2.8 6.1E-05 35.9 8.3 94 60-175 4-119 (291)
375 KOG3924 Putative protein methy 88.5 0.99 2.2E-05 40.1 5.3 105 56-176 190-307 (419)
376 KOG2651 rRNA adenine N-6-methy 88.4 0.74 1.6E-05 40.8 4.4 42 58-99 153-194 (476)
377 PRK05786 fabG 3-ketoacyl-(acyl 88.3 6.8 0.00015 31.9 10.2 112 58-178 4-136 (238)
378 cd08242 MDR_like Medium chain 87.9 2.2 4.8E-05 36.7 7.2 91 55-176 152-244 (319)
379 COG0604 Qor NADPH:quinone redu 87.9 2.1 4.4E-05 37.6 7.0 99 55-180 139-244 (326)
380 PF02153 PDH: Prephenate dehyd 87.8 2 4.4E-05 36.2 6.7 77 73-177 2-79 (258)
381 PRK07502 cyclohexadienyl dehyd 87.6 2.9 6.4E-05 36.1 7.8 90 60-176 7-99 (307)
382 PF02558 ApbA: Ketopantoate re 87.2 2.8 6.1E-05 31.8 6.7 91 62-179 1-103 (151)
383 TIGR00518 alaDH alanine dehydr 86.9 1.1 2.5E-05 39.9 4.9 106 58-183 166-273 (370)
384 TIGR02441 fa_ox_alpha_mit fatt 86.8 3.4 7.3E-05 40.5 8.4 98 60-179 336-452 (737)
385 PLN02178 cinnamyl-alcohol dehy 86.7 1.5 3.3E-05 39.1 5.7 94 57-178 177-274 (375)
386 cd08293 PTGR2 Prostaglandin re 86.7 7.2 0.00016 33.9 9.9 97 56-177 150-254 (345)
387 PRK01747 mnmC bifunctional tRN 86.7 2.3 5.1E-05 41.0 7.3 107 58-177 57-206 (662)
388 cd08231 MDR_TM0436_like Hypoth 86.6 3.5 7.5E-05 36.3 7.9 97 57-178 176-281 (361)
389 PF07279 DUF1442: Protein of u 86.6 6.2 0.00013 32.3 8.4 72 59-131 42-121 (218)
390 cd08295 double_bond_reductase_ 86.5 3.6 7.8E-05 35.8 7.9 98 55-178 148-252 (338)
391 cd08296 CAD_like Cinnamyl alco 86.5 3 6.6E-05 36.2 7.4 98 55-178 160-260 (333)
392 cd08245 CAD Cinnamyl alcohol d 86.5 3.3 7.1E-05 35.7 7.5 95 55-177 159-256 (330)
393 cd08298 CAD2 Cinnamyl alcohol 86.4 6.4 0.00014 33.9 9.3 92 55-178 164-257 (329)
394 cd05278 FDH_like Formaldehyde 86.4 1.2 2.5E-05 38.9 4.6 98 55-177 164-267 (347)
395 PRK03562 glutathione-regulated 86.3 5.1 0.00011 38.4 9.2 65 59-131 400-470 (621)
396 TIGR02437 FadB fatty oxidation 86.1 4.8 0.0001 39.3 9.0 98 60-179 314-430 (714)
397 KOG0023 Alcohol dehydrogenase, 85.9 3.4 7.4E-05 36.0 6.9 100 54-180 177-282 (360)
398 PRK07533 enoyl-(acyl carrier p 85.9 17 0.00036 30.3 11.3 75 58-135 9-98 (258)
399 PF02086 MethyltransfD12: D12 85.8 0.96 2.1E-05 37.9 3.7 56 46-102 6-63 (260)
400 COG3315 O-Methyltransferase in 85.8 7.6 0.00017 33.6 9.2 113 50-178 83-210 (297)
401 cd08301 alcohol_DH_plants Plan 85.8 2.7 5.9E-05 37.1 6.8 100 55-179 184-291 (369)
402 PRK07109 short chain dehydroge 85.7 12 0.00027 32.7 10.7 74 59-134 8-94 (334)
403 PRK05476 S-adenosyl-L-homocyst 85.6 2.4 5.3E-05 38.5 6.4 91 57-181 210-303 (425)
404 cd05285 sorbitol_DH Sorbitol d 85.6 4.2 9.1E-05 35.4 7.8 99 54-178 158-266 (343)
405 PRK06522 2-dehydropantoate 2-r 85.6 7.3 0.00016 33.3 9.2 95 61-179 2-102 (304)
406 TIGR02356 adenyl_thiF thiazole 85.5 2.7 5.8E-05 34.1 6.0 33 58-90 20-54 (202)
407 KOG1201 Hydroxysteroid 17-beta 85.4 3.6 7.8E-05 35.4 6.8 75 58-135 37-124 (300)
408 PRK11730 fadB multifunctional 85.4 6 0.00013 38.6 9.3 98 60-179 314-430 (715)
409 cd08233 butanediol_DH_like (2R 85.3 1.2 2.7E-05 39.0 4.3 99 55-178 169-273 (351)
410 cd08278 benzyl_alcohol_DH Benz 85.2 3.5 7.7E-05 36.4 7.2 96 56-178 184-286 (365)
411 PRK03659 glutathione-regulated 85.0 6.1 0.00013 37.7 9.0 97 60-182 401-503 (601)
412 KOG2360 Proliferation-associat 84.9 1.6 3.5E-05 38.7 4.6 63 57-119 212-276 (413)
413 cd05279 Zn_ADH1 Liver alcohol 84.8 2.7 5.8E-05 37.2 6.2 99 55-178 180-286 (365)
414 KOG0821 Predicted ribosomal RN 84.8 1.4 2.9E-05 36.3 3.8 60 58-118 50-109 (326)
415 cd08261 Zn_ADH7 Alcohol dehydr 84.5 1.4 3.1E-05 38.3 4.3 98 55-178 156-259 (337)
416 PRK12921 2-dehydropantoate 2-r 84.5 7.2 0.00016 33.4 8.6 92 61-177 2-102 (305)
417 TIGR00936 ahcY adenosylhomocys 84.0 3.2 7E-05 37.5 6.4 90 57-180 193-285 (406)
418 PRK08324 short chain dehydroge 83.8 9.5 0.00021 37.0 9.9 74 58-134 421-507 (681)
419 PLN02545 3-hydroxybutyryl-CoA 83.6 4.4 9.4E-05 34.8 6.9 94 60-175 5-117 (295)
420 PF11899 DUF3419: Protein of u 83.6 3.3 7.1E-05 37.2 6.2 47 55-102 32-78 (380)
421 PF05206 TRM13: Methyltransfer 83.6 1.9 4.2E-05 36.4 4.5 63 56-119 16-85 (259)
422 cd08265 Zn_ADH3 Alcohol dehydr 83.6 3.9 8.5E-05 36.4 6.8 99 55-178 200-308 (384)
423 PRK11154 fadJ multifunctional 83.6 8.8 0.00019 37.4 9.6 98 60-179 310-427 (708)
424 TIGR02354 thiF_fam2 thiamine b 83.5 11 0.00024 30.5 8.8 33 58-90 20-54 (200)
425 PRK08265 short chain dehydroge 83.5 15 0.00033 30.6 10.0 72 58-134 5-89 (261)
426 PF04072 LCM: Leucine carboxyl 83.5 3.8 8.3E-05 32.5 6.0 92 58-163 77-182 (183)
427 PRK07576 short chain dehydroge 83.4 17 0.00037 30.3 10.3 74 58-133 8-94 (264)
428 PF05050 Methyltransf_21: Meth 83.1 3 6.6E-05 31.9 5.2 41 64-104 1-48 (167)
429 PRK06130 3-hydroxybutyryl-CoA 83.1 8.1 0.00018 33.4 8.4 40 60-100 5-46 (311)
430 PF03686 UPF0146: Uncharacteri 83.0 1.9 4.2E-05 32.1 3.7 100 48-180 4-105 (127)
431 PRK11064 wecC UDP-N-acetyl-D-m 82.8 4.2 9E-05 36.9 6.7 37 60-97 4-42 (415)
432 COG1179 Dinucleotide-utilizing 82.7 6.1 0.00013 33.0 6.9 73 58-131 29-127 (263)
433 PRK10669 putative cation:proto 82.7 8.7 0.00019 36.3 9.0 64 60-131 418-487 (558)
434 PRK06701 short chain dehydroge 82.6 16 0.00035 31.1 10.0 115 58-177 45-181 (290)
435 PRK09496 trkA potassium transp 82.4 19 0.00041 32.7 11.0 68 58-131 230-303 (453)
436 PLN02702 L-idonate 5-dehydroge 82.4 5.5 0.00012 35.1 7.2 99 55-178 178-286 (364)
437 PLN02494 adenosylhomocysteinas 82.4 4.6 0.0001 37.2 6.7 90 57-179 252-343 (477)
438 COG0569 TrkA K+ transport syst 82.2 4.9 0.00011 33.2 6.4 64 61-131 2-72 (225)
439 cd08236 sugar_DH NAD(P)-depend 81.7 3.2 6.9E-05 36.1 5.4 96 55-177 156-258 (343)
440 PRK08507 prephenate dehydrogen 81.2 6.4 0.00014 33.4 6.9 84 61-174 2-88 (275)
441 cd08286 FDH_like_ADH2 formalde 81.1 4.4 9.6E-05 35.2 6.1 97 56-178 164-267 (345)
442 KOG1197 Predicted quinone oxid 80.9 5 0.00011 33.9 5.8 96 56-177 144-245 (336)
443 KOG1205 Predicted dehydrogenas 80.8 30 0.00065 29.7 10.7 113 58-178 11-150 (282)
444 PF01488 Shikimate_DH: Shikima 80.8 3.1 6.8E-05 31.3 4.4 73 58-135 11-85 (135)
445 COG1748 LYS9 Saccharopine dehy 80.4 4.2 9.1E-05 36.5 5.6 71 60-134 2-77 (389)
446 PRK06249 2-dehydropantoate 2-r 80.4 7.4 0.00016 33.7 7.2 100 59-179 5-108 (313)
447 KOG1098 Putative SAM-dependent 79.9 1.5 3.3E-05 41.3 2.8 109 54-178 40-159 (780)
448 PF03446 NAD_binding_2: NAD bi 79.6 6.7 0.00014 30.4 6.0 92 61-181 3-98 (163)
449 cd08240 6_hydroxyhexanoate_dh_ 79.5 5.8 0.00013 34.6 6.3 95 57-178 174-275 (350)
450 PRK08306 dipicolinate synthase 79.4 12 0.00026 32.3 8.0 92 58-180 151-244 (296)
451 cd00755 YgdL_like Family of ac 78.9 6.7 0.00014 32.6 6.1 33 58-90 10-44 (231)
452 cd05284 arabinose_DH_like D-ar 78.7 6.2 0.00014 34.1 6.2 97 56-178 165-267 (340)
453 cd01487 E1_ThiF_like E1_ThiF_l 78.7 15 0.00032 29.0 7.8 31 61-91 1-33 (174)
454 cd08263 Zn_ADH10 Alcohol dehyd 78.6 18 0.0004 31.8 9.3 96 56-178 185-288 (367)
455 PRK15116 sulfur acceptor prote 78.1 12 0.00025 32.0 7.4 33 58-90 29-63 (268)
456 COG0677 WecC UDP-N-acetyl-D-ma 77.9 20 0.00044 32.3 8.9 106 59-182 9-133 (436)
457 TIGR02440 FadJ fatty oxidation 77.9 17 0.00036 35.5 9.3 98 60-179 305-422 (699)
458 cd08284 FDH_like_2 Glutathione 77.8 14 0.0003 32.0 8.2 95 56-178 165-267 (344)
459 PRK12475 thiamine/molybdopteri 77.7 6.2 0.00013 34.8 5.8 34 58-91 23-58 (338)
460 PRK06079 enoyl-(acyl carrier p 77.5 39 0.00085 27.9 11.5 73 58-135 6-93 (252)
461 cd01492 Aos1_SUMO Ubiquitin ac 77.4 9.3 0.0002 30.8 6.4 33 58-90 20-54 (197)
462 cd01491 Ube1_repeat1 Ubiquitin 77.3 6.9 0.00015 33.7 5.8 72 58-132 18-112 (286)
463 PRK08339 short chain dehydroge 76.9 14 0.0003 30.9 7.7 75 58-133 7-93 (263)
464 PRK00094 gpsA NAD(P)H-dependen 76.9 18 0.00038 31.3 8.5 93 61-176 3-104 (325)
465 PRK09422 ethanol-active dehydr 76.6 9 0.00019 33.1 6.6 96 55-178 159-262 (338)
466 COG1250 FadB 3-hydroxyacyl-CoA 76.5 16 0.00035 31.8 7.9 103 60-180 4-121 (307)
467 cd08243 quinone_oxidoreductase 76.0 17 0.00038 30.7 8.2 94 56-177 140-238 (320)
468 TIGR00692 tdh L-threonine 3-de 75.8 4.1 8.9E-05 35.4 4.3 98 56-178 159-262 (340)
469 PRK05867 short chain dehydroge 75.7 13 0.00029 30.6 7.2 75 58-134 8-95 (253)
470 PF03721 UDPG_MGDP_dh_N: UDP-g 75.7 4.2 9.1E-05 32.5 3.9 107 61-182 2-125 (185)
471 cd08291 ETR_like_1 2-enoyl thi 75.7 29 0.00063 29.8 9.5 92 58-178 142-243 (324)
472 PRK09496 trkA potassium transp 75.5 34 0.00074 31.1 10.4 64 61-131 2-71 (453)
473 PTZ00142 6-phosphogluconate de 75.1 15 0.00032 34.1 7.8 96 61-176 3-100 (470)
474 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.1 8.7 0.00019 35.9 6.4 95 59-175 5-118 (503)
475 PRK07806 short chain dehydroge 74.9 44 0.00096 27.2 11.6 115 58-177 5-134 (248)
476 cd08274 MDR9 Medium chain dehy 74.9 21 0.00046 30.9 8.6 93 55-177 174-273 (350)
477 cd05281 TDH Threonine dehydrog 74.8 15 0.00032 32.0 7.5 97 56-178 161-263 (341)
478 PRK14620 NAD(P)H-dependent gly 74.5 26 0.00056 30.5 8.9 97 61-179 2-108 (326)
479 PRK06128 oxidoreductase; Provi 74.5 47 0.001 28.3 10.5 114 58-177 54-191 (300)
480 PRK07102 short chain dehydroge 74.5 14 0.0003 30.2 7.0 73 60-133 2-84 (243)
481 PRK08594 enoyl-(acyl carrier p 74.4 49 0.0011 27.5 11.1 73 58-134 6-96 (257)
482 PRK06129 3-hydroxyacyl-CoA deh 74.3 32 0.0007 29.7 9.4 39 61-100 4-44 (308)
483 cd08279 Zn_ADH_class_III Class 74.2 5.7 0.00012 35.0 4.8 97 55-178 179-283 (363)
484 COG1893 ApbA Ketopantoate redu 74.1 18 0.00039 31.4 7.7 96 60-182 1-106 (307)
485 PRK08415 enoyl-(acyl carrier p 74.0 53 0.0011 27.7 11.8 75 58-135 4-93 (274)
486 PRK05396 tdh L-threonine 3-deh 73.9 11 0.00023 32.8 6.4 98 57-179 162-265 (341)
487 PRK06505 enoyl-(acyl carrier p 73.6 53 0.0012 27.6 10.6 75 58-135 6-95 (271)
488 PRK07985 oxidoreductase; Provi 73.5 50 0.0011 28.1 10.4 115 58-177 48-185 (294)
489 PRK12937 short chain dehydroge 73.4 46 0.001 27.0 9.9 115 58-178 4-140 (245)
490 PRK08223 hypothetical protein; 73.4 11 0.00025 32.3 6.1 31 58-88 26-58 (287)
491 PRK07904 short chain dehydroge 73.1 16 0.00034 30.4 7.0 77 56-132 5-94 (253)
492 cd05213 NAD_bind_Glutamyl_tRNA 73.1 10 0.00022 32.9 6.0 41 58-98 177-219 (311)
493 PRK08268 3-hydroxy-acyl-CoA de 72.9 9.5 0.00021 35.6 6.1 95 60-176 8-121 (507)
494 cd08260 Zn_ADH6 Alcohol dehydr 72.9 8.6 0.00019 33.4 5.6 96 56-177 163-264 (345)
495 PRK06124 gluconate 5-dehydroge 72.9 20 0.00043 29.5 7.6 75 58-134 10-97 (256)
496 PRK09291 short chain dehydroge 72.5 20 0.00044 29.4 7.5 73 60-134 3-82 (257)
497 PRK05854 short chain dehydroge 72.5 24 0.00052 30.4 8.2 77 58-135 13-103 (313)
498 PRK12744 short chain dehydroge 72.5 53 0.0012 27.0 10.7 113 58-176 7-144 (257)
499 PRK07890 short chain dehydroge 72.4 21 0.00046 29.3 7.7 75 58-134 4-91 (258)
500 PRK06940 short chain dehydroge 72.3 21 0.00046 30.0 7.7 110 60-177 3-125 (275)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=6.6e-25 Score=180.60 Aligned_cols=167 Identities=27% Similarity=0.461 Sum_probs=135.9
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
+|.+|||+|||||..+..+++.... +|+++|+|+.|++.+++++...+..+++++++|+..+|+++++||+|.+...++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 7899999999999999999998545 999999999999999999998777679999999999999999999999988886
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEE-EEEe
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY-ILRK 215 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 215 (259)
.+ .+...+|+++.|+|||||++++.+++++..- .+... +. .|++. +++.
T Consensus 131 nv---------------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~--~~~~~-~~------------~~~~~~v~P~ 180 (238)
T COG2226 131 NV---------------TDIDKALKEMYRVLKPGGRLLVLEFSKPDNP--VLRKA-YI------------LYYFKYVLPL 180 (238)
T ss_pred cC---------------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCch--hhHHH-HH------------HHHHHhHhhh
Confidence 65 6889999999999999999999999886431 11111 11 11222 4444
Q ss_pred -CCCCCchhhhhhccCCCCCCcccccccccccccccccccCCCC
Q 025039 216 -GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM 258 (259)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (259)
+....++.+ .|. |+.++++.|.+..+...+++++||.++
T Consensus 181 ~g~~~~~~~~-~y~---yL~eSi~~~p~~~~l~~~~~~~gf~~i 220 (238)
T COG2226 181 IGKLVAKDAE-AYE---YLAESIRRFPDQEELKQMIEKAGFEEV 220 (238)
T ss_pred hceeeecChH-HHH---HHHHHHHhCCCHHHHHHHHHhcCceEE
Confidence 333333444 443 499999999999999999999999865
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=6.2e-24 Score=176.27 Aligned_cols=169 Identities=25% Similarity=0.463 Sum_probs=88.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
..++.+|||+|||||.++..+++. ++. +|+++|+|+.|++.|++++...+..+++++++|+.++|+++++||+|++..
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 457889999999999999999886 444 999999999999999999998877789999999999999999999999988
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEEEE
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYIL 213 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (259)
.++.+ .+..+.++++.|+|||||++++++++.+.. +++.. .+. .|...++
T Consensus 125 glrn~---------------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~~~-~~~------------~y~~~il 174 (233)
T PF01209_consen 125 GLRNF---------------PDRERALREMYRVLKPGGRLVILEFSKPRN--PLLRA-LYK------------FYFKYIL 174 (233)
T ss_dssp -GGG----------------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHHHH-HHH------------H------
T ss_pred hHHhh---------------CCHHHHHHHHHHHcCCCeEEEEeeccCCCC--chhhc-eee------------eeecccc
Confidence 87655 567889999999999999999999887653 12221 111 2344456
Q ss_pred EeCC-CCCchhhhhhccCCCCCCcccccccccccccccccccCCCC
Q 025039 214 RKGK-RSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM 258 (259)
Q Consensus 214 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (259)
+... ....+.. .| .|+.+++..|...-+..++++++||..+
T Consensus 175 P~~g~l~~~~~~-~Y---~yL~~Si~~f~~~~~~~~~l~~~Gf~~v 216 (233)
T PF01209_consen 175 PLIGRLLSGDRE-AY---RYLPESIRRFPSPEELKELLEEAGFKNV 216 (233)
T ss_dssp ----------------------------------------------
T ss_pred cccccccccccc-cc---cccccccccccccccccccccccccccc
Confidence 5433 3333333 34 5599999999999999999999999865
No 3
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.83 E-value=1e-20 Score=153.57 Aligned_cols=165 Identities=25% Similarity=0.352 Sum_probs=132.4
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCC-------CeEEEeeCCHHHHHHHHHHHhhcCCC---CeEEEEcccCCCcCCCCcee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGI-------TAITCIDLSAVAVEKMQERLLLKGYK---EVKVLEADMLDLPFSNDCFD 127 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~~fD 127 (259)
.+.++||+|||||.++..+.+... .+|+++|+|++|+.+++++..+.++. .+.|+++|+.++|+++.+||
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 568999999999999998887622 38999999999999999998766653 27899999999999999999
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc-cccccCCCCCCcEEEEEEeCCeE
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF-RRPFFNAPQFTWSVEWITFGDGF 206 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 206 (259)
.+.+...+. +..++++.+++++|+|||||++++.+|+.... ....+..
T Consensus 180 ~yTiafGIR---------------N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~---------------- 228 (296)
T KOG1540|consen 180 AYTIAFGIR---------------NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD---------------- 228 (296)
T ss_pred eEEEeccee---------------cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH----------------
Confidence 999877764 44788999999999999999999999886431 1111111
Q ss_pred EEEEEEEEe-CCCCCchhhhhhccCCCCCCcccccccccccccccccccCCC
Q 025039 207 HYFFYILRK-GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDE 257 (259)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (259)
.|++.+++. +..+.++.. +|+| ++++|++|..+-+++.+|..+||.-
T Consensus 229 ~ysf~VlpvlG~~iagd~~-sYqY---LveSI~rfp~qe~f~~miedaGF~~ 276 (296)
T KOG1540|consen 229 QYSFDVLPVLGEIIAGDRK-SYQY---LVESIRRFPPQEEFASMIEDAGFSS 276 (296)
T ss_pred hhhhhhhchhhHhhhhhHh-hhhh---HHhhhhcCCCHHHHHHHHHHcCCcc
Confidence 345556654 555566665 5544 9999999999999999999999874
No 4
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.80 E-value=8e-19 Score=143.88 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=106.7
Q ss_pred cchhhhcCCCCccccc--ccchHHHHhhccc-CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh
Q 025039 27 HYWDERFSDEEHYEWL--KDYSHFRHLVQPH-IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL 103 (259)
Q Consensus 27 ~~w~~~~~~~~~~~w~--~~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 103 (259)
+||+++|++... .|. ...+.+..++... ++++.+|||+|||.|..+.+|+++|. +|+|+|+|+.+++.+.+....
T Consensus 1 ~~Wd~ry~~~~~-~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~ 78 (213)
T TIGR03840 1 EFWHERWQEGQI-GFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGL 78 (213)
T ss_pred ChHHHHHhcCCC-CCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCC
Confidence 489999988654 443 3344555655542 25678999999999999999999999 899999999999986443211
Q ss_pred c------------CCCCeEEEEcccCCCcCC-CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039 104 K------------GYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 170 (259)
Q Consensus 104 ~------------~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 170 (259)
. .-.++++.++|+.+++.. .+.||.|+...+++++ +.+....+++.+.++|+||
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-------------~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 79 TPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-------------PEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred CcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-------------CHHHHHHHHHHHHHHcCCC
Confidence 0 112588899999887632 3579999998888777 5577888999999999999
Q ss_pred cEEEEEecCC
Q 025039 171 GLFISVSFGQ 180 (259)
Q Consensus 171 G~l~~~~~~~ 180 (259)
|.++++++..
T Consensus 146 G~~ll~~~~~ 155 (213)
T TIGR03840 146 ARQLLITLDY 155 (213)
T ss_pred CeEEEEEEEc
Confidence 9988876643
No 5
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.78 E-value=3.4e-18 Score=138.92 Aligned_cols=130 Identities=20% Similarity=0.416 Sum_probs=103.5
Q ss_pred CccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039 25 DPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK 104 (259)
Q Consensus 25 ~~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 104 (259)
+..||.+.|... +..+.+...+. ..++.+|||+|||+|..+..+++.|. +|+++|+|+.+++.++++....
T Consensus 5 ~~~~~~~~~~~~------~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~ 75 (197)
T PRK11207 5 DENYFTDKYGLT------RTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAE 75 (197)
T ss_pred hHHHHHHhcCCC------CChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHc
Confidence 355676666432 12334444443 23568999999999999999999987 9999999999999999998888
Q ss_pred CCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 105 GYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 105 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
++.++++.+.|+.+.+++ ++||+|+++.+++++ +..+...+++++.++|+|||++++++
T Consensus 76 ~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~-------------~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 76 NLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL-------------EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCCcceEEecChhhCCcC-CCcCEEEEecchhhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 877788889998876654 579999999888766 44678899999999999999976643
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=5.4e-18 Score=125.06 Aligned_cols=106 Identities=32% Similarity=0.563 Sum_probs=87.2
Q ss_pred CCCcEEEEcCCCCcchHHHHh--cCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEccc-CCCcCCCCceeEEEecc
Q 025039 58 PNSSVLELGCGNSRLSEGLYN--DGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADM-LDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~~fD~V~~~~ 133 (259)
|+.+|||+|||+|..+..+++ .+. +++++|+|+.+++.+++++...+. +++++.++|+ ..... .+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 578999999999999999999 444 999999999999999999954443 4699999999 33332 35799999988
Q ss_pred -eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 134 -TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 134 -~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
++++++ +.++..++++.+.+.|+|||++++.+
T Consensus 79 ~~~~~~~------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLL------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCC------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccccccc------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 555331 33678899999999999999999875
No 7
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.77 E-value=7.3e-18 Score=138.66 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=105.9
Q ss_pred CccchhhhcCCCCccccccc-chHHHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039 25 DPHYWDERFSDEEHYEWLKD-YSHFRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL 102 (259)
Q Consensus 25 ~~~~w~~~~~~~~~~~w~~~-~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 102 (259)
++++|+++|+.....+|... .+.+...+.. .++++.+|||+|||.|..+.+|+++|. +|+|+|+|+.+++.+.+...
T Consensus 2 ~~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~ 80 (218)
T PRK13255 2 DPDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENG 80 (218)
T ss_pred CHhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcC
Confidence 47899999988654333333 3445555432 335678999999999999999999999 89999999999998753211
Q ss_pred hc------------CCCCeEEEEcccCCCcCC-CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC
Q 025039 103 LK------------GYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 169 (259)
Q Consensus 103 ~~------------~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 169 (259)
.. ...++++.++|+.++... ...||+|+...+++++ +.+...++++.+.++|+|
T Consensus 81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-------------~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-------------PEEMRERYVQQLAALLPA 147 (218)
T ss_pred CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-------------CHHHHHHHHHHHHHHcCC
Confidence 10 113588899999887532 2579999998888877 567889999999999999
Q ss_pred CcEEEEEec
Q 025039 170 DGLFISVSF 178 (259)
Q Consensus 170 gG~l~~~~~ 178 (259)
||.++++++
T Consensus 148 gG~~~l~~~ 156 (218)
T PRK13255 148 GCRGLLVTL 156 (218)
T ss_pred CCeEEEEEE
Confidence 997666443
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=3.6e-18 Score=133.13 Aligned_cols=107 Identities=28% Similarity=0.506 Sum_probs=93.6
Q ss_pred CCCCcEEEEcCCCCcchHHHH-hcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEec
Q 025039 57 KPNSSVLELGCGNSRLSEGLY-NDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEK 132 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~-~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~ 132 (259)
+++.+|||+|||+|..+..++ +.++. +++|+|+|+.+++.|+++++..+++++++.++|+.+++ ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 357899999999999999999 44544 99999999999999999999999888999999999976 44 789999999
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.+++++ .+...+++++.++|++||.+++..+.
T Consensus 81 ~~l~~~---------------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF---------------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT---------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc---------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888655 56779999999999999999988765
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=5.4e-18 Score=143.54 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=122.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhh---cCCCCeEEEEcccCCCcCCCCceeEEE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLL---KGYKEVKVLEADMLDLPFSNDCFDVVI 130 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~V~ 130 (259)
+.++.+|||+|||+|..+..+++. ++. +|+|+|+|++|++.|+++... ...++++++++|+.++++++++||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 457889999999999999988876 443 899999999999999887532 223468999999999998888999999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEE
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFF 210 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (259)
++.+++++ .++..+++++.++|||||.+++.++..+... ... ....|....
T Consensus 151 ~~~~l~~~---------------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~--~~~-~~~~~~~~~----------- 201 (261)
T PLN02233 151 MGYGLRNV---------------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQP--FTT-SMQEWMIDN----------- 201 (261)
T ss_pred EecccccC---------------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcH--HHH-HHHHHHHhh-----------
Confidence 98888766 4678899999999999999999988764321 100 101111000
Q ss_pred EEEEeCCCCCchhhhhhccCCCCCCcccccccccccccccccccCCCC
Q 025039 211 YILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM 258 (259)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (259)
.+.+.+... .... .| .++..++..|....+..+.++++||+.+
T Consensus 202 ~~~~~~~~~-~~~~-~y---~~l~~s~~~f~s~~el~~ll~~aGF~~~ 244 (261)
T PLN02233 202 VVVPVATGY-GLAK-EY---EYLKSSINEYLTGEELEKLALEAGFSSA 244 (261)
T ss_pred hhhHHHHHh-CChH-HH---HHHHHHHHhcCCHHHHHHHHHHCCCCEE
Confidence 011111111 1111 22 2266778889999999999999999764
No 10
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.76 E-value=2.8e-18 Score=132.69 Aligned_cols=156 Identities=26% Similarity=0.463 Sum_probs=121.3
Q ss_pred CCCCCCCCccchhhhcCCC---------Ccccccccch--HHHHhhcccC-----CCCC-cEEEEcCCCCcchHHHHhcC
Q 025039 18 PTTSAYLDPHYWDERFSDE---------EHYEWLKDYS--HFRHLVQPHI-----KPNS-SVLELGCGNSRLSEGLYNDG 80 (259)
Q Consensus 18 ~~~~~~~~~~~w~~~~~~~---------~~~~w~~~~~--~~~~~l~~~~-----~~~~-~vLDiGcG~G~~~~~l~~~~ 80 (259)
-..+..+.++||++.|..+ ..--|+.... ++..++...+ .+.+ +|||+|||+|.++..|++.|
T Consensus 10 l~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg 89 (227)
T KOG1271|consen 10 LGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG 89 (227)
T ss_pred ccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc
Confidence 3445667799999999642 1223776532 3444444332 3344 99999999999999999999
Q ss_pred CC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHH
Q 025039 81 IT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMA 158 (259)
Q Consensus 81 ~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 158 (259)
+. .++|+|+|+++++.|+..++..++++ |++.+.|+.+..+..++||+|+..+.++++...+.. ....+..
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~-------~~~r~~~ 162 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDG-------PVGRLVV 162 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCC-------cccceee
Confidence 88 69999999999999999999999988 999999999877777899999999999988544221 1123367
Q ss_pred HHHHHHhcccCCcEEEEEecCC
Q 025039 159 MLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 159 ~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
++..+.++|+|||++++..++-
T Consensus 163 Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 163 YLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ehhhHhhccCCCcEEEEEecCc
Confidence 8999999999999999987653
No 11
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.76 E-value=2.7e-18 Score=122.36 Aligned_cols=95 Identities=35% Similarity=0.598 Sum_probs=81.8
Q ss_pred EEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCC
Q 025039 63 LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS 142 (259)
Q Consensus 63 LDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~ 142 (259)
||+|||+|..+..+++.+..+++++|+++.+++.++++.... .+.+..+|+.++++++++||+|++..+++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec----
Confidence 899999999999999993339999999999999999987653 3569999999999999999999999998876
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
++...+++++.|+|||||++++
T Consensus 74 -----------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -----------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----------cCHHHHHHHHHHHcCcCeEEeC
Confidence 6889999999999999999985
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.76 E-value=1.2e-17 Score=146.45 Aligned_cols=109 Identities=25% Similarity=0.362 Sum_probs=95.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|..+..+++....+|+|+|+|+.+++.+++++...+.. ++++.++|+.++++++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 467899999999999999999874239999999999999999988877764 5999999999988888999999998888
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+|+ .+...+++++.++|||||.++++++..
T Consensus 197 ~h~---------------~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHM---------------PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hcc---------------CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 776 456789999999999999999987654
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=1.3e-18 Score=141.23 Aligned_cols=106 Identities=28% Similarity=0.437 Sum_probs=94.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
++.+|||+|||.|.++..+++.|. +|+|+|+++++++.|+....+.++ .+.+.+..+.++....++||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 789999999999999999999997 999999999999999999888776 466777777776655589999999999987
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+ +++..++..+.+++||||.+++.+..+
T Consensus 137 v---------------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 V---------------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred c---------------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 7 677789999999999999999988764
No 14
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.74 E-value=2.5e-17 Score=131.61 Aligned_cols=129 Identities=26% Similarity=0.465 Sum_probs=99.3
Q ss_pred ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039 26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG 105 (259)
Q Consensus 26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 105 (259)
.+||.+.|..... .+.+...+ ..+ +++++||+|||.|+.+.+|++.|. .|+++|.|+.+++.+++.+...+
T Consensus 6 ~~y~~kky~~~~~------hs~v~~a~-~~~-~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~ 76 (192)
T PF03848_consen 6 EDYFHKKYGLTPT------HSEVLEAV-PLL-KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG 76 (192)
T ss_dssp TTHHHHHHTB----------HHHHHHC-TTS--SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCCCC------cHHHHHHH-hhc-CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC
Confidence 5677777755432 23344433 233 567999999999999999999999 89999999999999999888888
Q ss_pred CCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 106 YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 106 ~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+ .++..+.|+.+..++ +.||+|++..+++++ ..+...++++.+.+.++|||+++++++
T Consensus 77 l-~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL-------------~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 77 L-DIRTRVADLNDFDFP-EEYDFIVSTVVFMFL-------------QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp --TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS--------------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred c-eeEEEEecchhcccc-CCcCEEEEEEEeccC-------------CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 7 489999999887765 689999998888887 556778999999999999999998665
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.73 E-value=1.9e-17 Score=139.86 Aligned_cols=117 Identities=19% Similarity=0.289 Sum_probs=97.1
Q ss_pred HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCc-CCCCc
Q 025039 48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP-FSNDC 125 (259)
Q Consensus 48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~ 125 (259)
+..++.....++.+|||+|||+|..+..+++.+. +|+++|+|+.|++.|++++...++. +++++++|+.++. ..+++
T Consensus 34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence 3344443334678999999999999999999987 9999999999999999998887763 5889999987753 45678
Q ss_pred eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
||+|++..+++++ .++..+++++.++|||||++++..++.
T Consensus 113 fD~V~~~~vl~~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 113 VDLILFHAVLEWV---------------ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCEEEehhHHHhh---------------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 9999999998776 455689999999999999999876654
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.73 E-value=4.9e-17 Score=131.93 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=89.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
++.+|||+|||+|..+..+++.|. +|+++|+|+.+++.+++++...++ .+.+...|+...+++ ++||+|+++.++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcccc-CCCCEEEEeccccc
Confidence 467999999999999999999887 999999999999999998877776 377777787665544 57999999998877
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+ +..+...+++++.++|+|||+++++++
T Consensus 107 ~-------------~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 107 L-------------QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred C-------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 6 446788999999999999999776643
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.72 E-value=1.3e-16 Score=128.03 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=90.6
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
..++++.+|||+|||+|..+..++...+. +|+++|+++.+++.++++++..+.+++++.++|+.+++. .++||+|+++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 44566899999999999999999876544 999999999999999999999988779999999988765 6789999986
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.. .....+++.+.++|+|||++++....
T Consensus 120 ~~-------------------~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 120 AV-------------------ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred cc-------------------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 41 24567999999999999999998654
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.72 E-value=2.1e-17 Score=143.09 Aligned_cols=107 Identities=18% Similarity=0.267 Sum_probs=93.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
++.+|||+|||+|.++..+++.|. +|+|+|+++++++.|+++....+. .++.++++|+.++++.+++||+|++..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 467999999999999999998877 899999999999999988655443 358899999988877778999999999998
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
|+ .+...+++++.++|||||.+++.+...
T Consensus 210 Hv---------------~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HV---------------ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hc---------------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 87 466789999999999999999987654
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.72 E-value=1.1e-16 Score=133.22 Aligned_cols=112 Identities=23% Similarity=0.450 Sum_probs=95.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
+.++.+|||+|||+|..+..+++. ++. +++|+|+++.+++.+++++...+.+++.++++|+.++++++++||+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 456789999999999999999876 444 899999999999999999887777779999999988877778999999987
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
+++++ .+..++++++.++|+|||.+++.+...+.
T Consensus 123 ~l~~~---------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 123 GLRNV---------------PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred ccccC---------------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 77655 35568999999999999999988766543
No 20
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=6.3e-17 Score=135.76 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=101.2
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
..+++|.+|||||||-|.+++.+++....+|+|+++|+++.+.++++++..|+. ++++...|..++. +.||-|++.
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSv 144 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSV 144 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeeh
Confidence 356799999999999999999999985239999999999999999999999997 5999999988865 459999999
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
++++|+ +.+....+++.+.++|+|||.+++.+...+..
T Consensus 145 gmfEhv-------------g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 145 GMFEHV-------------GKENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred hhHHHh-------------CcccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 999998 55778999999999999999999988776553
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=1.4e-16 Score=133.97 Aligned_cols=113 Identities=21% Similarity=0.348 Sum_probs=94.0
Q ss_pred hhcccCCCCCcEEEEcCCCCcchHHHHhc--CCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCce
Q 025039 51 LVQPHIKPNSSVLELGCGNSRLSEGLYND--GIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCF 126 (259)
Q Consensus 51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 126 (259)
++...+.++.+|||+|||+|..+..+++. .+. +++++|+|+.|++.|++++...+.. +++++++|+.+++++ .+
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~ 126 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NA 126 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CC
Confidence 33444567889999999999999888773 333 9999999999999999999876654 589999999887653 58
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+|+++.+++++ ...+...+++++.++|+|||.+++.+.
T Consensus 127 D~vv~~~~l~~l-------------~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 127 SMVVLNFTLQFL-------------EPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CEEehhhHHHhC-------------CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999888877 345678999999999999999999863
No 22
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=1.6e-16 Score=136.46 Aligned_cols=104 Identities=20% Similarity=0.358 Sum_probs=90.9
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.+++++...++ ++.+...|+....+ +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 456999999999999999999987 999999999999999999888776 78888888876554 578999999998887
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+ +.++...+++++.++|+|||+++++.
T Consensus 197 l-------------~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 L-------------NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred C-------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6 45678899999999999999977754
No 23
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.70 E-value=3.6e-16 Score=128.37 Aligned_cols=141 Identities=17% Similarity=0.235 Sum_probs=109.6
Q ss_pred CCccchhhhcCCCCccccccc--chHHHHhhccc-CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHH
Q 025039 24 LDPHYWDERFSDEEHYEWLKD--YSHFRHLVQPH-IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQER 100 (259)
Q Consensus 24 ~~~~~w~~~~~~~~~~~w~~~--~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~ 100 (259)
.+.+||+++|+... ..|... .+.+...+... ..++.+||++|||.|..+.+|++.|. +|+|+|+|+.+++.+.+.
T Consensus 7 ~~~~fW~~rw~~~~-~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 7 NNNQYWLDRWQNDD-VGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CCHHHHHHHHhcCC-CCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHH
Confidence 45889999998864 345332 23343444432 34568999999999999999999999 899999999999998663
Q ss_pred Hh------------hcCCCCeEEEEcccCCCcCC---CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHh
Q 025039 101 LL------------LKGYKEVKVLEADMLDLPFS---NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR 165 (259)
Q Consensus 101 ~~------------~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (259)
.. .....++++.++|+++++.. .+.||+|+....|.++ +.+...++++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-------------pp~~R~~Y~~~l~~ 151 (226)
T PRK13256 85 NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-------------PNDLRTNYAKMMLE 151 (226)
T ss_pred cCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-------------CHHHHHHHHHHHHH
Confidence 21 01113689999999998631 3579999999989888 66788999999999
Q ss_pred cccCCcEEEEEecC
Q 025039 166 VLKPDGLFISVSFG 179 (259)
Q Consensus 166 ~LkpgG~l~~~~~~ 179 (259)
+|+|||.++++++.
T Consensus 152 lL~pgg~llll~~~ 165 (226)
T PRK13256 152 VCSNNTQILLLVME 165 (226)
T ss_pred HhCCCcEEEEEEEe
Confidence 99999999998764
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.69 E-value=5.9e-17 Score=117.53 Aligned_cols=96 Identities=31% Similarity=0.580 Sum_probs=81.6
Q ss_pred EEEEcCCCCcchHHHHhcC---C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec-ceee
Q 025039 62 VLELGCGNSRLSEGLYNDG---I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK-ATME 136 (259)
Q Consensus 62 vLDiGcG~G~~~~~l~~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~ 136 (259)
|||+|||+|..+..+++.. + .+++++|+|+.|++.++++....+. ++++.++|+.+++..+++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999874 3 3999999999999999999887665 7899999999988777899999995 4488
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCc
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 171 (259)
++ ..++...+++++.++|+|||
T Consensus 80 ~~-------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-------------SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-------------CHHHHHHHHHHHHHHhCCCC
Confidence 76 66889999999999999998
No 25
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.69 E-value=3.6e-16 Score=132.55 Aligned_cols=118 Identities=18% Similarity=0.308 Sum_probs=95.8
Q ss_pred HHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCce
Q 025039 48 FRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF 126 (259)
Q Consensus 48 ~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 126 (259)
...++.. .+.++.+|||+|||+|..+..+++....+|+++|+|+.+++.+++++... +++.+.++|+.+.++++++|
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCe
Confidence 4444432 35678999999999999999887753239999999999999999987542 36899999998888878899
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
|+|++..++.|+ ...+...+++++.++|||||.+++.++..
T Consensus 119 D~V~s~~~l~h~-------------~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 119 DMIYSRDAILHL-------------SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEEEhhhHHhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999998776655 33578899999999999999999987643
No 26
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.68 E-value=2.7e-16 Score=124.51 Aligned_cols=136 Identities=19% Similarity=0.364 Sum_probs=99.6
Q ss_pred ccchhhhcCCCCccc----ccccchHHHHhhcccCC--CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039 26 PHYWDERFSDEEHYE----WLKDYSHFRHLVQPHIK--PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE 99 (259)
Q Consensus 26 ~~~w~~~~~~~~~~~----w~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~ 99 (259)
.++|++.+.+++.+. ||... +....+...++ .-.++||+|||.|.++..|+.+.- +++++|+|+.+++.|++
T Consensus 6 ~~~l~~~la~~DPW~~~~~~YE~~-K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~ 83 (201)
T PF05401_consen 6 YQLLNRELANDDPWGFETSWYERR-KYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARE 83 (201)
T ss_dssp HHHHHHHHTSSSGGGTTT-HHHHH-HHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHH-HHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHH
Confidence 567777777766543 33321 22223321122 337899999999999999999976 99999999999999999
Q ss_pred HHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 100 RLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 100 ~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
++... ++|++.+.|+.+. .+.++||+|+++.+++++ .+.+++..++..+...|+|||.+++..+
T Consensus 84 Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL------------~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 84 RLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL------------DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HTTT---SSEEEEES-TTT----SS-EEEEEEES-GGGS------------SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHcC------------CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 98853 6899999999774 367899999999999888 3457889999999999999999999765
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.67 E-value=4.2e-16 Score=131.37 Aligned_cols=103 Identities=22% Similarity=0.375 Sum_probs=88.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
++.+|||+|||+|.++..+++.+. +++++|+|+.|++.++++.. ...++++|+..+++++++||+|+++.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 467899999999999999988876 99999999999999998743 356788999888887889999999888765
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
. .+...++.++.++|+|||.+++.++...
T Consensus 116 ~---------------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 116 C---------------GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred c---------------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 4 4667899999999999999999887653
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.67 E-value=1.1e-15 Score=121.36 Aligned_cols=112 Identities=23% Similarity=0.415 Sum_probs=91.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
++.+|||+|||+|.++..+++.++. +|+++|+++.+++.+++++..+++.++++...|+.+.. +.++||+|+++++++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccceeEEEEccchh
Confidence 6789999999999999999999887 79999999999999999999999877999999987733 467999999998864
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.-. ..+.....++++.+.++|+|||.++++....
T Consensus 110 ~~~----------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 110 AGG----------DDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp TTS----------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ccc----------ccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 321 1134567899999999999999998765443
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.67 E-value=5.9e-16 Score=132.00 Aligned_cols=110 Identities=24% Similarity=0.381 Sum_probs=94.1
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.+.++.+|||+|||+|..+..+++. +.. +|+++|+++.+++.|+++....+++++++..+|+.++++++++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 3567899999999999988777665 554 79999999999999999988888878999999998888777899999998
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.++++. .+...+++++.++|||||++++.++.
T Consensus 154 ~v~~~~---------------~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 154 CVINLS---------------PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CcccCC---------------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 887654 35568999999999999999997653
No 30
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=8.4e-16 Score=125.37 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=87.1
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
.+.++.+|||+|||+|..+..+++..+ .+++|+|+|+.+++.|+++. +++.+.++|+.+ ++++++||+|++++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 456778999999999999999988732 39999999999999999864 356778888887 77788999999999
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+++|+ +.+...++++++.+++ ++.+++.++..
T Consensus 114 vL~hl-------------~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 114 VLIHI-------------NPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhhhC-------------CHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 99887 4467889999999998 56777776543
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.66 E-value=1.6e-15 Score=126.99 Aligned_cols=109 Identities=22% Similarity=0.314 Sum_probs=91.5
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcC--CC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEE
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDG--IT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVI 130 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~ 130 (259)
.+.++.+|||+|||+|..+..+++.. +. +++|+|+|+.|++.|++++...+. .+++++++|+.+++++ .+|+|+
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEe
Confidence 34577899999999999999998863 33 899999999999999999876543 2589999999887754 589999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+..+++++ ...+...+++++.++|+|||.+++.+.
T Consensus 128 ~~~~l~~~-------------~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFL-------------PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhC-------------CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99888876 445678999999999999999999864
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.65 E-value=9.1e-16 Score=130.21 Aligned_cols=108 Identities=30% Similarity=0.449 Sum_probs=87.5
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.+++|.+|||||||.|.++..+++. |. +|+|+.+|++..+.+++++...|+.+ +++...|..+++ .+||.|++.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi 134 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSI 134 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEE
Confidence 4679999999999999999999999 66 99999999999999999999999875 899999988765 389999999
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
++++|+ +..+...+++++.++|+|||++++..+.
T Consensus 135 ~~~Ehv-------------g~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 135 EMFEHV-------------GRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp SEGGGT-------------CGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred echhhc-------------ChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999887 4567889999999999999999986543
No 33
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.65 E-value=5.2e-16 Score=131.11 Aligned_cols=99 Identities=23% Similarity=0.269 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|.++..+++..+. +|+|+|+|+.|++.++++ ++++.++|+.++. +.++||+|+++.++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l 99 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-CCCCceEEEEehhh
Confidence 46789999999999999999988544 899999999999999763 4788889987764 45789999999999
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+++ .+...+++++.++|||||.+++..+
T Consensus 100 ~~~---------------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 100 QWV---------------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhC---------------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 876 3567899999999999999998754
No 34
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.65 E-value=6.3e-16 Score=126.98 Aligned_cols=139 Identities=23% Similarity=0.431 Sum_probs=103.6
Q ss_pred CccchhhhcCCCCccccccc--chHHHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH
Q 025039 25 DPHYWDERFSDEEHYEWLKD--YSHFRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL 101 (259)
Q Consensus 25 ~~~~w~~~~~~~~~~~w~~~--~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~ 101 (259)
+.++|+++|+.... .|... .+.+..++.. ...++.+||+.|||.|..+.+|++.|. +|+|+|+|+.+++.+.+..
T Consensus 2 ~~~~W~~~w~~~~~-~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~ 79 (218)
T PF05724_consen 2 DPEFWEERWQEGQT-PWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEEN 79 (218)
T ss_dssp HHHHHHHHHHTT---TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHC
T ss_pred CHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHh
Confidence 46899999988643 34443 4556666554 345677999999999999999999999 9999999999999985432
Q ss_pred hh------------cCCCCeEEEEcccCCCcCCC-CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhccc
Q 025039 102 LL------------KGYKEVKVLEADMLDLPFSN-DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK 168 (259)
Q Consensus 102 ~~------------~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 168 (259)
.. ....+|++.++|+++++... ++||+|+....|.++ +.+...++.+.+.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-------------pp~~R~~Ya~~l~~ll~ 146 (218)
T PF05724_consen 80 NLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-------------PPEMRERYAQQLASLLK 146 (218)
T ss_dssp TTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS--------------GGGHHHHHHHHHHCEE
T ss_pred ccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-------------CHHHHHHHHHHHHHHhC
Confidence 21 01234789999999976433 479999999888877 55788899999999999
Q ss_pred CCcEEEEEec
Q 025039 169 PDGLFISVSF 178 (259)
Q Consensus 169 pgG~l~~~~~ 178 (259)
|||.++++++
T Consensus 147 p~g~~lLi~l 156 (218)
T PF05724_consen 147 PGGRGLLITL 156 (218)
T ss_dssp EEEEEEEEEE
T ss_pred CCCcEEEEEE
Confidence 9999555443
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=1.7e-15 Score=121.29 Aligned_cols=100 Identities=20% Similarity=0.301 Sum_probs=85.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
++.+|||+|||+|..+..++..++. +|+++|+|+.+++.++++++..++++++++++|+.++. ..++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 4789999999999999999877655 89999999999999999998888877999999998864 356899999865 32
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
....+++.+.++|+|||.+++..
T Consensus 120 ------------------~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ------------------SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ------------------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 33467888899999999999874
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.64 E-value=1.1e-15 Score=119.69 Aligned_cols=102 Identities=30% Similarity=0.575 Sum_probs=83.3
Q ss_pred cccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 53 QPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 53 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.....++.+|||+|||+|.++..+++.+. +++|+|+++.+++. ..+.....+......++++||+|+|.
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 17 LPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICN 85 (161)
T ss_dssp HTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEE
T ss_pred hcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhH
Confidence 33356789999999999999999999988 99999999999988 12333333333334456899999999
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.+++++ .+...+|+++.++|||||++++.++..
T Consensus 86 ~~l~~~---------------~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 86 DVLEHL---------------PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSGGGS---------------SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHhhc---------------ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999887 478899999999999999999988765
No 37
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.64 E-value=2.3e-15 Score=133.21 Aligned_cols=201 Identities=34% Similarity=0.535 Sum_probs=166.6
Q ss_pred CCCCCCCCCCccchhhhcCCC--CcccccccchHHHHhhcccCCCCC-cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHH
Q 025039 16 GPPTTSAYLDPHYWDERFSDE--EHYEWLKDYSHFRHLVQPHIKPNS-SVLELGCGNSRLSEGLYNDGITAITCIDLSAV 92 (259)
Q Consensus 16 ~~~~~~~~~~~~~w~~~~~~~--~~~~w~~~~~~~~~~l~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~ 92 (259)
.|.+.-.|.+.+||+.+|... ..++|+..+..+...+..++.+.. ++|.+|||+..+...+.+.|+..++.+|+|+.
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V 82 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSV 82 (482)
T ss_pred CcccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHH
Confidence 467778899999999999875 678899998888888888887777 99999999999999999999989999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039 93 AVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172 (259)
Q Consensus 93 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 172 (259)
.++.+..+.. ...+-+.+..+|+..+.+++++||+|+..+.+|+++.+....|.+ ......+.+++++|+|||+
T Consensus 83 ~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~-----~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 83 VVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNT-----AHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred HHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhh-----HHhhHHHhhHHHHhccCCE
Confidence 9999987754 333458899999999999999999999999999999888777743 5567889999999999999
Q ss_pred EEEEecC--CccccccccCCCCCCcEEEEEEeCCeEEEEEEEEEeCCCCCch
Q 025039 173 FISVSFG--QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSAD 222 (259)
Q Consensus 173 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
++.+++. .++.+...+...-..|........+..++.+.++.++..-...
T Consensus 157 ~~svtl~~~vp~~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~ 208 (482)
T KOG2352|consen 157 YISVTLVQVVPQGRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTP 208 (482)
T ss_pred EEEEEeeeeccCCCCeeeeecCccchhhhhhhccCcceEEEEeccCccccch
Confidence 9999885 4555554444444456666667777888999999888766654
No 38
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.64 E-value=3.4e-16 Score=128.11 Aligned_cols=103 Identities=26% Similarity=0.392 Sum_probs=84.4
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC------CeEEEEcccCCCcCCCCceeEEEec
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK------EVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
+.+|||+|||+|.++..|++.|. .|+|+|+++++++.|++........ .+.+.+.++.... +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 47899999999999999999998 9999999999999999984333221 1334445554433 469999999
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.+++|+ .+++++++.+.++|||||.+++.+..+
T Consensus 166 evleHV---------------~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHV---------------KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHH---------------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 998765 899999999999999999999987654
No 39
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=1.6e-15 Score=131.97 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=87.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
++.+|||+|||+|..+..++..|+..|+|+|+|+.++..++......+ -.++.+..+|+.+++. .++||+|+|.++++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 578999999999999999999987689999999999876554322221 1368999999988887 67899999999987
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|. .++..+++++++.|+|||.+++.+.
T Consensus 201 H~---------------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 201 HR---------------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cc---------------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 76 4667899999999999999998653
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.63 E-value=8.7e-17 Score=116.13 Aligned_cols=96 Identities=32% Similarity=0.552 Sum_probs=64.7
Q ss_pred EEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecceeeeee
Q 025039 63 LELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLF 139 (259)
Q Consensus 63 LDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~ 139 (259)
||+|||+|.++..+++..+. +++++|+|+.|++.+++++......+......+..+.. ...++||+|++..+++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999998555 99999999999999999888766444444444333322 122589999999999887
Q ss_pred eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEE
Q 025039 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173 (259)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 173 (259)
++...+++++.++|+|||+|
T Consensus 80 --------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------------S-HHHHHHHHTTT-TSS-EE
T ss_pred --------------hhHHHHHHHHHHHcCCCCCC
Confidence 57789999999999999986
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=2.8e-15 Score=137.51 Aligned_cols=109 Identities=23% Similarity=0.340 Sum_probs=92.3
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.+|||+|||+|..+..+++....+++|+|+|+.+++.|+++....+ .++.+.++|+...++++++||+|++..++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 35678999999999999998887643389999999999999998865333 35899999998887777899999999988
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+|+ .+...+++++.++|+|||.+++.++..
T Consensus 343 ~h~---------------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 343 LHI---------------QDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccc---------------CCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 776 466799999999999999999987643
No 42
>PRK05785 hypothetical protein; Provisional
Probab=99.63 E-value=2.4e-15 Score=124.72 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=110.5
Q ss_pred HHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeE
Q 025039 49 RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDV 128 (259)
Q Consensus 49 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 128 (259)
...+.....++.+|||+|||||..+..+++....+|+|+|+|++|++.|+++. .++++|+.++++++++||+
T Consensus 42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d~sfD~ 113 (226)
T PRK05785 42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFRDKSFDV 113 (226)
T ss_pred HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCCCCCEEE
Confidence 33444334457899999999999999999884228999999999999998641 3467899889998999999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEE
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY 208 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (259)
|++..+++++ .+..++++++.++|||. +++++++.+... ++. .-+. .|
T Consensus 114 v~~~~~l~~~---------------~d~~~~l~e~~RvLkp~--~~ile~~~p~~~--~~~-~~~~------------~y 161 (226)
T PRK05785 114 VMSSFALHAS---------------DNIEKVIAEFTRVSRKQ--VGFIAMGKPDNV--IKR-KYLS------------FY 161 (226)
T ss_pred EEecChhhcc---------------CCHHHHHHHHHHHhcCc--eEEEEeCCCCcH--HHH-HHHH------------HH
Confidence 9999888765 57789999999999994 333445443211 111 0000 11
Q ss_pred EEEEEEe-CCCCCchhhhhhccCCCCCCcccccccccccccccccc
Q 025039 209 FFYILRK-GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRT 253 (259)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (259)
...+++. +.....+.. .| .|+.+++..|...-+..+++++.
T Consensus 162 ~~~~~P~~~~~~~~~~~-~Y---~yl~~si~~f~~~~~~~~~~~~~ 203 (226)
T PRK05785 162 LRYIMPYIACLAGAKCR-DY---KYIYYIYERLPTNSFHREIFEKY 203 (226)
T ss_pred HHHHHHHHHHHhcCChH-HH---HHHHHHHHHCCCHHHHHHHHHHH
Confidence 1123332 222223232 34 44888999999988888888764
No 43
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.62 E-value=6.1e-15 Score=130.35 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=116.7
Q ss_pred CccchhhhcCCCC-cccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHh
Q 025039 25 DPHYWDERFSDEE-HYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLL 102 (259)
Q Consensus 25 ~~~~w~~~~~~~~-~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~ 102 (259)
..+||...|.... ..........+...+...+.++.+|||+|||+|.+++.++...+. +++++|+|+.+++.|++++.
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA 296 (423)
T ss_pred eeeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 3667776665422 222122223344444444556679999999999999999876544 89999999999999999998
Q ss_pred hcCCCCeEEEEcccCCCcC-CCCceeEEEecceeeeee----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCc
Q 025039 103 LKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEVLF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171 (259)
Q Consensus 103 ~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 171 (259)
..+. ++.++++|+.+... ..++||+|+|++++-..- .++...+....++.....++++.+.++|+|||
T Consensus 297 ~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG 375 (423)
T PRK14966 297 DLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGG 375 (423)
T ss_pred HcCC-cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCc
Confidence 7774 78999999866432 235799999998752110 00111122334556667899999999999999
Q ss_pred EEEEE-ecCCccccccccCCCCCCcEEEEEEe
Q 025039 172 LFISV-SFGQPHFRRPFFNAPQFTWSVEWITF 202 (259)
Q Consensus 172 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (259)
.+++. .+.+......++...++.......++
T Consensus 376 ~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl 407 (423)
T PRK14966 376 FLLLEHGFDQGAAVRGVLAENGFSGVETLPDL 407 (423)
T ss_pred EEEEEECccHHHHHHHHHHHCCCcEEEEEEcC
Confidence 98763 34455555555555554433333444
No 44
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=2.9e-15 Score=129.25 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|.++..++..|...|+|+|+|+.|+..++......+ ...+.+...++.+++.. .+||+|+|.+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 4578999999999999999998887689999999999876543222111 13577888888777643 489999999999
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|. .++..+|++++++|+|||.|++.+.
T Consensus 199 ~H~---------------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 199 YHR---------------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hcc---------------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 776 4667899999999999999998754
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.62 E-value=4.8e-15 Score=123.50 Aligned_cols=106 Identities=26% Similarity=0.487 Sum_probs=91.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
.+.+|||+|||+|..+..+++.++. +++++|+++.+++.++++.. +++.++.+|+.+.++++++||+|++..+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 4578999999999999999998875 78999999999999998764 367889999988877778999999998887
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
++ .+...++.++.++|+|||.+++.++....
T Consensus 110 ~~---------------~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 110 WC---------------DDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hc---------------cCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 65 46678999999999999999998775543
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=1.3e-14 Score=108.63 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=85.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~ 133 (259)
+.++.+|||+|||+|..+..+++..+. +++++|+++.+++.++++++..+.+++.+..+|+.. .+....+||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 345679999999999999999988554 899999999999999999888877778888888764 222235899999865
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.. ....++++.+.+.|+|||.+++..
T Consensus 97 ~~------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 97 SG------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cc------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 43 234689999999999999999864
No 47
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=4.1e-15 Score=125.80 Aligned_cols=101 Identities=23% Similarity=0.382 Sum_probs=85.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|.++..+++..+. +++|+|+|+.+++.++++. +++.+..+|+..+. +..+||+|+++.++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ-PPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC-CCCCccEEEEccCh
Confidence 46789999999999999999987544 9999999999999999874 36788889987654 34689999999998
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+++ .+...+++++.++|+|||.+++...
T Consensus 104 ~~~---------------~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 104 QWL---------------PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred hhC---------------CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 766 3567899999999999999998643
No 48
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.60 E-value=5e-15 Score=117.05 Aligned_cols=107 Identities=25% Similarity=0.362 Sum_probs=91.5
Q ss_pred CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeE-EEEcccCCCc-CCCCceeEEEecceeee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLP-FSNDCFDVVIEKATMEV 137 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~V~~~~~l~~ 137 (259)
..|||+|||||..-.+.-..-..+|+++|++++|-+.+.+.++++....+. ++.++..+++ ++++++|+|++..++-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC- 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC- 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe-
Confidence 457999999999988776544449999999999999999999888655666 8899998887 7889999999987773
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
..+++.+.|+++.++|+|||++++.++...
T Consensus 157 --------------Sve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 157 --------------SVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred --------------ccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 347889999999999999999999987653
No 49
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.60 E-value=3.3e-15 Score=111.02 Aligned_cols=113 Identities=25% Similarity=0.421 Sum_probs=88.8
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc--CCCCceeEEEeccee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP--FSNDCFDVVIEKATM 135 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l 135 (259)
|.+|||+|||+|.++..+++.+..+++++|+++.+++.++.++...+. .++++.++|+.+.. ++.++||+|+++.++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999999833999999999999999999998876 35999999998764 667899999999887
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
...... ..........+++.+.++|+|||.++++.+
T Consensus 81 ~~~~~~-------~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGD-------KAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT-----------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccc-------chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 432100 001223567899999999999999998754
No 50
>PRK06922 hypothetical protein; Provisional
Probab=99.60 E-value=6.2e-15 Score=135.92 Aligned_cols=118 Identities=18% Similarity=0.335 Sum_probs=92.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecce
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT 134 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 134 (259)
++.+|||+|||+|..+..+++..+. +++|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 5789999999999999888887655 99999999999999998876544 35788889988776 67789999999988
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|+++.-. ++.....+..+...+++++.++|||||.+++.+.
T Consensus 497 LH~L~syI--p~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYI--EYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhc--ccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 87652100 0000001346788999999999999999999864
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.60 E-value=4.6e-15 Score=121.01 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=90.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CCCc--CCCCceeEEEecc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDLP--FSNDCFDVVIEKA 133 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~V~~~~ 133 (259)
++.+|||+|||+|..+..+++..+. +++++|+|+.+++.+++++...+.+++.++++|+ ..++ +++++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999999887654 8999999999999999999888777799999998 5554 5567899999754
Q ss_pred eeeeeeeCCCCCCCCCchh--HHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 134 TMEVLFVNSGDPWNPQPET--VTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
+. +|...++. ......+++++.++|+|||.+++.+....
T Consensus 120 ~~---------p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 120 PD---------PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred CC---------CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 32 22211111 11246899999999999999999865443
No 52
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.60 E-value=5.9e-15 Score=122.21 Aligned_cols=104 Identities=22% Similarity=0.363 Sum_probs=88.7
Q ss_pred CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
++|||+|||+|..+..+++..+. +++|+|+|+.+++.+++++...++.. +++...|+...+.+ ++||+|++..++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999887644 89999999999999999988777644 88999998665544 58999999888876
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+ .+...+++++.++|+|||.+++.++.
T Consensus 80 ~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 I---------------KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred C---------------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 6 45679999999999999999998753
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=1.7e-14 Score=127.20 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=91.5
Q ss_pred hhcccCCC--CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC---CCeEEEEcccCCCcCCCC
Q 025039 51 LVQPHIKP--NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLPFSND 124 (259)
Q Consensus 51 ~l~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~ 124 (259)
++...++. +.+|||+|||+|.+++.+++.++. +|+++|+|+.+++.++++++.++. .++++...|..+. .+..
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~ 297 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPF 297 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCC
Confidence 34444432 468999999999999999998776 999999999999999999877653 2578888887652 2345
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+||+|+|+++||.... -......+++..+.++|+|||.++++..
T Consensus 298 ~fDlIlsNPPfh~~~~----------~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 298 RFNAVLCNPPFHQQHA----------LTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CEEEEEECcCcccCcc----------CCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 8999999999875311 0223457899999999999999999853
No 54
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.59 E-value=5.1e-15 Score=126.20 Aligned_cols=140 Identities=23% Similarity=0.366 Sum_probs=96.6
Q ss_pred CCCCCCCCCCccchhhhcCCCCcccc---cccc-hHHHHhhcccCC-CCCcEEEEcCCCCcchHHHHhcCC----CeEEE
Q 025039 16 GPPTTSAYLDPHYWDERFSDEEHYEW---LKDY-SHFRHLVQPHIK-PNSSVLELGCGNSRLSEGLYNDGI----TAITC 86 (259)
Q Consensus 16 ~~~~~~~~~~~~~w~~~~~~~~~~~w---~~~~-~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~----~~v~~ 86 (259)
.+..........++.+.+.....+.. +... ..+...+...+. ++.+|||+|||+|..+..+++..+ ..++|
T Consensus 38 l~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g 117 (272)
T PRK11088 38 LPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFG 117 (272)
T ss_pred ccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEE
Confidence 34333444445566666654222211 1111 223233443333 457899999999999998887633 16899
Q ss_pred eeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhc
Q 025039 87 IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRV 166 (259)
Q Consensus 87 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (259)
+|+|+.+++.|+++. +++.+.++|+.++++++++||+|++... ...++++.++
T Consensus 118 iD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~~----------------------~~~~~e~~rv 170 (272)
T PRK11088 118 LDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIYA----------------------PCKAEELARV 170 (272)
T ss_pred ECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEecC----------------------CCCHHHHHhh
Confidence 999999999998763 4688999999998888889999997421 1245788999
Q ss_pred ccCCcEEEEEecCCcc
Q 025039 167 LKPDGLFISVSFGQPH 182 (259)
Q Consensus 167 LkpgG~l~~~~~~~~~ 182 (259)
|||||+++++.++..+
T Consensus 171 LkpgG~li~~~p~~~~ 186 (272)
T PRK11088 171 VKPGGIVITVTPGPRH 186 (272)
T ss_pred ccCCCEEEEEeCCCcc
Confidence 9999999999877654
No 55
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.59 E-value=5.7e-15 Score=125.13 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCCcEEEEcCCCCc----chHHHHhcCC-----C-eEEEeeCCHHHHHHHHHHHhh----cCC-----------------
Q 025039 58 PNSSVLELGCGNSR----LSEGLYNDGI-----T-AITCIDLSAVAVEKMQERLLL----KGY----------------- 106 (259)
Q Consensus 58 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~-~v~~vD~s~~~~~~a~~~~~~----~~~----------------- 106 (259)
++.+|||+|||+|. +++.+++.++ . +|+|+|+|+.|++.|++..-. .++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 4555655432 3 899999999999999985310 011
Q ss_pred ------CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 107 ------KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 107 ------~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
..+.+.++|+.+.+.+.++||+|+|.++++++ +.+...++++++.++|+|||++++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-------------~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-------------DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-------------CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 25889999998877667899999999999887 5567889999999999999999975
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.58 E-value=3.4e-14 Score=113.74 Aligned_cols=120 Identities=20% Similarity=0.291 Sum_probs=91.6
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+. ++.+..+|+.+.. .++||+|+++.+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 467899999999999999999988 999999999999999999887765 6888889987643 358999999988754
Q ss_pred eeeCCC-CCC-----CCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 138 LFVNSG-DPW-----NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 138 ~~~~~~-~~~-----~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
.-.... ..| .....+......+++++.++|+|||.++++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 411100 001 00111233467899999999999999999876543
No 57
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.58 E-value=1.2e-14 Score=126.32 Aligned_cols=104 Identities=26% Similarity=0.334 Sum_probs=87.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|..+..+++... .+++++|+|+.|++.++++... .+++++.+|+.++++++++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 4578999999999999988887643 3899999999999999987642 35788999998888878899999999888
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+++ .+...+++++.++|+|||.+++...
T Consensus 189 ~~~---------------~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 189 EYW---------------PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhC---------------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 765 3456799999999999999988754
No 58
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.57 E-value=2e-14 Score=116.29 Aligned_cols=167 Identities=20% Similarity=0.369 Sum_probs=114.7
Q ss_pred CCccchhhhcCCCCc-c----cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC---eEEEeeCCHHHHH
Q 025039 24 LDPHYWDERFSDEEH-Y----EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVE 95 (259)
Q Consensus 24 ~~~~~w~~~~~~~~~-~----~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~~vD~s~~~~~ 95 (259)
..+.|||..|..... + .|.. ..+..++...-++..+|||+|||.|.....+.+..++ .++++|+|+.+++
T Consensus 34 ~~~k~wD~fy~~~~~rFfkdR~wL~--~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~ 111 (264)
T KOG2361|consen 34 EASKYWDTFYKIHENRFFKDRNWLL--REFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE 111 (264)
T ss_pred chhhhhhhhhhhccccccchhHHHH--HhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH
Confidence 347899999976322 1 2222 1222333222223348999999999999988887554 8999999999999
Q ss_pred HHHHHHhhcCCCCeEEEEcccCC----CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCc
Q 025039 96 KMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171 (259)
Q Consensus 96 ~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 171 (259)
..+++..... ..+...+.|+.. -+...+++|+|++..+|.++ +++....+++++.++|||||
T Consensus 112 ~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-------------~pek~~~a~~nl~~llKPGG 177 (264)
T KOG2361|consen 112 LVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-------------HPEKMQSVIKNLRTLLKPGG 177 (264)
T ss_pred HHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEecc-------------ChHHHHHHHHHHHHHhCCCc
Confidence 9998754332 234444555543 23556899999999999888 66888999999999999999
Q ss_pred EEEEEecCCccccccccCCCCCCcEEEEEEeCCeEE
Q 025039 172 LFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFH 207 (259)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (259)
.+++.+++.......-+... ..........+++..
T Consensus 178 ~llfrDYg~~DlaqlRF~~~-~~i~~nfYVRgDGT~ 212 (264)
T KOG2361|consen 178 SLLFRDYGRYDLAQLRFKKG-QCISENFYVRGDGTR 212 (264)
T ss_pred EEEEeecccchHHHHhccCC-ceeecceEEccCCce
Confidence 99999999876654444422 233333333445443
No 59
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.57 E-value=2.8e-14 Score=120.01 Aligned_cols=135 Identities=20% Similarity=0.282 Sum_probs=96.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
.+.+|||+|||+|..+..+++..+. +++++|+++.+++.+++++...+++++.+.++|+.+ .++.++||+|+++.++.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4568999999999999999987555 999999999999999999988887779999999876 34567899999988764
Q ss_pred eeee-----C------CCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec-CCccccccccCCCCC
Q 025039 137 VLFV-----N------SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF-GQPHFRRPFFNAPQF 193 (259)
Q Consensus 137 ~~~~-----~------~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~ 193 (259)
..-. . +...+.....+......+++.+.++|+|||.+++... .+......++...++
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf 234 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGF 234 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCC
Confidence 2100 0 0000001112234456889999999999999998532 222333344444444
No 60
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.56 E-value=2e-14 Score=123.03 Aligned_cols=137 Identities=13% Similarity=0.209 Sum_probs=98.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
++.+|||+|||+|.++..++...+. +++++|+|+.+++.|++++..+++. ++.++++|+.+. ++.++||+|++++++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCC
Confidence 4578999999999999999988655 9999999999999999999988875 489999998652 344579999999775
Q ss_pred eeeee----------CCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCc
Q 025039 136 EVLFV----------NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTW 195 (259)
Q Consensus 136 ~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 195 (259)
...-. .+...+.....+......++..+.++|+|||++++...........++...++.|
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCce
Confidence 31100 0000011122345567889999999999999998754332223334455555555
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=6.6e-14 Score=112.82 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=84.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
+.++.+|||+|||+|..+..+++.++. +++++|+++.+++.+++++...++.++++..+|... .+ .++||+|++.+.
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECCC
Confidence 457789999999999999999988765 999999999999999999888777678998888743 33 357999998654
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.+ ....+++.+.+.|+|||++++...
T Consensus 107 ~~------------------~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 107 GG------------------NLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred cc------------------CHHHHHHHHHHhcCCCeEEEEEEe
Confidence 32 235688999999999999988653
No 62
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.56 E-value=5.4e-14 Score=120.76 Aligned_cols=111 Identities=19% Similarity=0.287 Sum_probs=87.6
Q ss_pred HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeE
Q 025039 50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDV 128 (259)
Q Consensus 50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~ 128 (259)
..+.....++.+|||+|||+|.+++.+++.|..+++++|+++.+++.|++++..+++.. +.+...+... ...++||+
T Consensus 151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDl 228 (288)
T TIGR00406 151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADV 228 (288)
T ss_pred HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceE
Confidence 34444456789999999999999999988876699999999999999999998887654 5555555322 23468999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
|+++... .....++.++.++|+|||.+++..+..
T Consensus 229 Vvan~~~------------------~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 229 IVANILA------------------EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred EEEecCH------------------HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 9986532 345678999999999999999987643
No 63
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.5e-14 Score=119.42 Aligned_cols=140 Identities=19% Similarity=0.290 Sum_probs=102.5
Q ss_pred cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeee
Q 025039 61 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 139 (259)
Q Consensus 61 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 139 (259)
+|||+|||+|.+++.++..++. +|+++|+|+.+++.|++|+..+++.++.++.+|+++-. . ++||+|++|+++=---
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-R-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-C-CceeEEEeCCCCCCCc
Confidence 7999999999999999999887 99999999999999999999998756666777876632 2 3899999998761110
Q ss_pred -eCC------CCC---CCCCchhHHHHHHHHHHHHhcccCCcEEEEE-ecCCccccccccCCCC-CCcEEEEEEe
Q 025039 140 -VNS------GDP---WNPQPETVTKVMAMLEGVHRVLKPDGLFISV-SFGQPHFRRPFFNAPQ-FTWSVEWITF 202 (259)
Q Consensus 140 -~~~------~~~---~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 202 (259)
... ..| ......+.....+++..+.+.|+|||.+++. .+.+......++...+ +.+......+
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~ 265 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDL 265 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecC
Confidence 000 001 1223466778899999999999999988874 3456555556666666 3333334333
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=2.3e-14 Score=116.13 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=89.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA 133 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~ 133 (259)
...+|||+|||+|..+..+++..+. .++|+|+++.+++.|++++...++.++.++++|+.++. ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4568999999999999999998766 89999999999999999998888888999999997643 3456789888653
Q ss_pred eeeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 134 TMEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+ +||.+..+... ....+++++.++|||||.+++.+...
T Consensus 96 p---------dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 P---------DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred C---------CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 2 34432211111 12579999999999999999876544
No 65
>PRK08317 hypothetical protein; Provisional
Probab=99.56 E-value=4.2e-14 Score=117.75 Aligned_cols=108 Identities=25% Similarity=0.384 Sum_probs=90.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
+.++.+|||+|||+|..+..+++.. +. +++++|+++.+++.++++... ...++.+...|+...+++.++||+|++..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCCceEEEEec
Confidence 4577899999999999999998875 33 899999999999999987332 22468899999888777778999999998
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+++++ .+...+++++.++|+|||.+++.++.
T Consensus 96 ~~~~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 96 VLQHL---------------EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhhcc---------------CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 88766 45678999999999999999987653
No 66
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.55 E-value=6.2e-14 Score=115.78 Aligned_cols=133 Identities=18% Similarity=0.272 Sum_probs=97.6
Q ss_pred ccchhhhcCCCCccccccc-----c----hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHH
Q 025039 26 PHYWDERFSDEEHYEWLKD-----Y----SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEK 96 (259)
Q Consensus 26 ~~~w~~~~~~~~~~~w~~~-----~----~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~ 96 (259)
...|+.+|...+...+... . ..+...+.....++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 14 FQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM 92 (219)
T ss_pred HHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 4568888876433333221 0 112223222134678999999999999999998876 99999999999999
Q ss_pred HHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 97 MQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 97 a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
|++++...+. .++.+.++|+...+ ++||+|++..++.++ ...+...++.++.+++++++++.+
T Consensus 93 a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~-------------~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 93 ARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHY-------------PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhC-------------CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999877665 35889999987754 689999998877655 335677899999999987666554
No 67
>PRK14967 putative methyltransferase; Provisional
Probab=99.55 E-value=8.2e-14 Score=115.41 Aligned_cols=122 Identities=23% Similarity=0.353 Sum_probs=92.0
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.+|||+|||+|.++..++..+..+++++|+++.+++.+++++...+. ++.++++|+.+. +++++||+|+++.++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA-VEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh-ccCCCeeEEEECCCC
Confidence 456789999999999999999887655899999999999999999887765 578888888763 345789999998765
Q ss_pred eeeeeC------CCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 136 EVLFVN------SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 136 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
...... ....|....+.......+++++.++|+|||+++++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 322100 00112222234445678999999999999999986443
No 68
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.55 E-value=5.3e-14 Score=117.28 Aligned_cols=108 Identities=27% Similarity=0.442 Sum_probs=91.6
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
++.+|||+|||+|..+..++..++ .+++++|+++.+++.+++++...+.. ++.+..+|+.+.+.+.+.||+|++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 578999999999999999999875 39999999999999999988765433 488899999887766678999998877
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+++. .+...+++++.++|+|||.++++++..
T Consensus 131 l~~~---------------~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNV---------------PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccC---------------CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 7655 456789999999999999999887654
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.55 E-value=4.5e-14 Score=125.58 Aligned_cols=107 Identities=31% Similarity=0.449 Sum_probs=88.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.+|||+|||+|.++..+++....+|+|+|+|+++++.+++++. +. .+++...|..++ +++||.|++..++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l---~~~fD~Ivs~~~~ 238 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL---NGQFDRIVSVGMF 238 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc---CCCCCEEEEeCch
Confidence 46788999999999999999987632399999999999999999875 32 477788887664 3689999999888
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
+++ +..+...+++++.++|||||.+++.++..+
T Consensus 239 ehv-------------g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 239 EHV-------------GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hhC-------------ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 776 445678899999999999999999876543
No 70
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=1.3e-13 Score=120.58 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=97.6
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
.++++.+|||+|||+|.+++.++..+. +++|+|+++.|++.++++++..+++++.+.++|+.+++..+++||+|+++++
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 356788999999999999998887776 8999999999999999999988887788999999998877789999999887
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
+.......+ .........+++++.++|+|||.+++.......
T Consensus 258 yg~~~~~~~------~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 258 YGRSTTAAG------DGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred CcCcccccC------CchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 643211000 012234688999999999999999988766543
No 71
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.8e-14 Score=117.90 Aligned_cols=111 Identities=24% Similarity=0.378 Sum_probs=90.7
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
+.+|||+|||.|.+++.+++..+. +++.+|++..+++.+++++..+++.+..+...|..+ +..+ +||+|+||++||.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHA 236 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccC
Confidence 459999999999999999999887 999999999999999999999988666666777766 3333 8999999999974
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
=.. -...-..+++..+.+.|++||.|.++..+..
T Consensus 237 G~~----------v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l 270 (300)
T COG2813 237 GKA----------VVHSLAQEIIAAAARHLKPGGELWIVANRHL 270 (300)
T ss_pred Ccc----------hhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence 310 0112345899999999999999999977543
No 72
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=115.85 Aligned_cols=101 Identities=25% Similarity=0.313 Sum_probs=89.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.+..+|.|+|||+|..+..|+++.+. .++|+|.|++|++.|++++ ++++|..+|+.+.. +...+|+++++.+|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~-p~~~~dllfaNAvl 102 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK-PEQPTDLLFANAVL 102 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC-CCCccchhhhhhhh
Confidence 35689999999999999999999877 9999999999999998875 58999999998876 45689999999999
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.+ .+-.+++.++...|.|||++-+-.+
T Consensus 103 qWl---------------pdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 103 QWL---------------PDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhc---------------cccHHHHHHHHHhhCCCceEEEECC
Confidence 877 5667899999999999999998654
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.54 E-value=9.5e-14 Score=116.96 Aligned_cols=105 Identities=23% Similarity=0.398 Sum_probs=81.4
Q ss_pred HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeE
Q 025039 50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDV 128 (259)
Q Consensus 50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~ 128 (259)
..+.....++.+|||+|||+|.+++.+++.|..+++++|+++.+++.|++++..+++. .+.+..+ +.+||+
T Consensus 111 ~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~ 182 (250)
T PRK00517 111 EALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADV 182 (250)
T ss_pred HHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCE
Confidence 3344445678999999999999999888888757999999999999999999877752 2333222 127999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
|+++... .....++.++.++|+|||.+++..+..
T Consensus 183 Vvani~~------------------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 183 IVANILA------------------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred EEEcCcH------------------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 9986432 345678999999999999999986643
No 74
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.3e-14 Score=119.13 Aligned_cols=114 Identities=25% Similarity=0.422 Sum_probs=91.3
Q ss_pred hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCC
Q 025039 46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSND 124 (259)
Q Consensus 46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 124 (259)
......+.....++.+|||+|||+|.+++..++.|..+++|+|++|.+++.+++|+..++++. +.....+....+ ..+
T Consensus 150 ~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~ 228 (300)
T COG2264 150 SLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENG 228 (300)
T ss_pred HHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccC
Confidence 345566777778999999999999999999999999889999999999999999999998754 223333333322 336
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.||+|++|=.. +-+..+...+.++++|||++++...
T Consensus 229 ~~DvIVANILA------------------~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 229 PFDVIVANILA------------------EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred cccEEEehhhH------------------HHHHHHHHHHHHHcCCCceEEEEee
Confidence 89999987422 3456899999999999999999865
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.54 E-value=9e-14 Score=121.70 Aligned_cols=108 Identities=24% Similarity=0.361 Sum_probs=89.2
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
..+|||+|||+|.++..+++.++. +++++|+++.+++.++++++.+++ ...+...|+... ..+.||+|+++++||.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc--cCCCccEEEECCCccC
Confidence 468999999999999999998765 899999999999999999988876 356777777552 2468999999999875
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
... .......+++..+.++|+|||.++++...
T Consensus 274 g~~----------~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 274 GIQ----------TSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred Ccc----------ccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 311 13456789999999999999999998654
No 76
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.54 E-value=1.3e-13 Score=108.46 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=91.5
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
..+.++.+++|+|||||..++.++..++. +++++|-++++++..++|++..+++++.++.+++-+.-....++|.|+..
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG 109 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEEC
Confidence 34568899999999999999999988887 99999999999999999999999999999999986632122279999986
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+. .....+++.+...|+|||++++-...
T Consensus 110 Gg-------------------~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 110 GG-------------------GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CC-------------------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 64 35678999999999999999986543
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.54 E-value=1e-13 Score=114.23 Aligned_cols=101 Identities=23% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
+.++.+|||+|||+|..+..+++.... +|+++|+++.+++.|++++...++++++++++|+.+......+||+|++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 457899999999999999999887542 699999999999999999999988789999999876543346899999765
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
... .+.+.+.+.|+|||++++..
T Consensus 155 ~~~---------------------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AGP---------------------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred Ccc---------------------cccHHHHHhcCcCcEEEEEE
Confidence 432 23455788999999999853
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.54 E-value=1.5e-13 Score=117.80 Aligned_cols=129 Identities=14% Similarity=0.222 Sum_probs=95.8
Q ss_pred CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
.+|||+|||+|.+++.++...+. +++++|+|+.+++.|++++..+++.+ +.+.++|+.+ +++..+||+|++++++-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 68999999999999999988764 99999999999999999998888754 9999999876 333447999999876521
Q ss_pred ee----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe-cCCccccccccC
Q 025039 138 LF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS-FGQPHFRRPFFN 189 (259)
Q Consensus 138 ~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~ 189 (259)
.- ..+...+...+++......++..+.++|+|||++++.. ..+......++.
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR 257 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence 10 00001112234556678899999999999999998743 334443334443
No 79
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.53 E-value=8.5e-14 Score=120.72 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=91.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
+.++.+|||+|||+|..++.+++..+. +++++|. +.+++.+++++...++. +++++.+|+.+.+++ .+|+|++..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~ 223 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCR 223 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEh
Confidence 346689999999999999999999876 8999997 78999999999888775 489999999875544 369999888
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
++|++ +.+....+++++.++|+|||++++.++.
T Consensus 224 ~lh~~-------------~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 224 ILYSA-------------NEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhhcC-------------ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 77765 4456788999999999999999998753
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=8.8e-14 Score=114.27 Aligned_cols=100 Identities=21% Similarity=0.195 Sum_probs=82.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
+.++.+|||+|||+|..+..+++.. .. +|+++|+++++++.++++++..++.+++++++|......+.+.||+|++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 4578999999999999999888773 32 899999999999999999998888789999999877544567899999865
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.... +...+.+.|+|||++++.
T Consensus 154 ~~~~---------------------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGPD---------------------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Cccc---------------------chHHHHHhhCCCcEEEEE
Confidence 5432 234567789999999885
No 81
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=1.6e-13 Score=112.16 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=81.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
+.++.+|||+|||+|..+..+++... .+|+++|+++.+++.+++++...++.+ +++..+|+.+......+||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 35678999999999999998887632 289999999999999999998887754 899999987744345689999987
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.++.++ .+++.+.|+|||++++..
T Consensus 150 ~~~~~~---------------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTI---------------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchh---------------------hHHHHHhcCcCcEEEEEE
Confidence 765433 246788999999998753
No 82
>PRK06202 hypothetical protein; Provisional
Probab=99.53 E-value=1.2e-13 Score=114.98 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=83.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHh----cCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039 57 KPNSSVLELGCGNSRLSEGLYN----DGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE 131 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~----~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 131 (259)
.++.+|||+|||+|.++..+++ .|+. +++|+|+|+.|++.|+++.... ++.+...+...++.++++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence 4568999999999999888875 3554 8999999999999999876433 356666666555556679999999
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
+.+++|+ ..++..++++++.++++ |.+++.++..+
T Consensus 136 ~~~lhh~-------------~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHL-------------DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecC-------------ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 9999987 33456789999999998 66666665543
No 83
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.53 E-value=1.3e-13 Score=113.75 Aligned_cols=106 Identities=25% Similarity=0.433 Sum_probs=90.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
++.+|||+|||+|..+..+++.++. +++++|+++.+++.++++.. ...++.+..+|+.+.+++.++||+|++...+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 6789999999999999999988764 89999999999999999875 2235889999998877666789999998777
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
++. .+...+++++.++|+|||.+++.++..
T Consensus 117 ~~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 117 RNV---------------TDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CCc---------------ccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 654 466789999999999999999987654
No 84
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.52 E-value=6.9e-14 Score=119.40 Aligned_cols=112 Identities=25% Similarity=0.420 Sum_probs=87.1
Q ss_pred HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCce
Q 025039 47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF 126 (259)
Q Consensus 47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 126 (259)
....++.....++.+|||+|||+|.+++..++.|..+|+++|+++.+++.|++|+..+++.. .+......+. ..++|
T Consensus 150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~--~~~~~ 226 (295)
T PF06325_consen 150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL--VEGKF 226 (295)
T ss_dssp HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT--CCS-E
T ss_pred HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc--ccccC
Confidence 34456666677889999999999999999999998899999999999999999999999866 3322222222 24789
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
|+|++|-.. ..+..++..+.++|+|||.+++...-
T Consensus 227 dlvvANI~~------------------~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 227 DLVVANILA------------------DVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EEEEEES-H------------------HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred CEEEECCCH------------------HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 999987433 45578889999999999999997653
No 85
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.52 E-value=9.7e-14 Score=116.86 Aligned_cols=122 Identities=21% Similarity=0.318 Sum_probs=91.0
Q ss_pred cccccc--hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc
Q 025039 40 EWLKDY--SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM 116 (259)
Q Consensus 40 ~w~~~~--~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~ 116 (259)
+|...+ .++...+... .|++|||||||+|..+..++.+|+..|+|+|+++...-..+-.....+.+. +..+...+
T Consensus 97 EWrSd~KW~rl~p~l~~L--~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv 174 (315)
T PF08003_consen 97 EWRSDWKWDRLLPHLPDL--KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV 174 (315)
T ss_pred cccccchHHHHHhhhCCc--CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch
Confidence 465543 3344444322 688999999999999999999999899999999887766443323333222 33443456
Q ss_pred CCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 117 LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 117 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.+++. .+.||+|+|.+++.|. .++...|.+++..|+|||.+++-+.-
T Consensus 175 E~Lp~-~~~FDtVF~MGVLYHr---------------r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 175 EDLPN-LGAFDTVFSMGVLYHR---------------RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred hhccc-cCCcCEEEEeeehhcc---------------CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 66775 6789999999999876 67789999999999999999986653
No 86
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.51 E-value=7.7e-14 Score=115.23 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=92.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc--CCCCceeEEEecc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP--FSNDCFDVVIEKA 133 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~V~~~~ 133 (259)
...+|||+|||+|.+++.++++.. .++++||+++.+.+.|+++++.+++.. ++++++|+..+. ....+||+|+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 478999999999999999999955 499999999999999999999988765 999999998754 3345799999999
Q ss_pred eeeeeeeC-CCCCCCC--CchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 134 TMEVLFVN-SGDPWNP--QPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 134 ~l~~~~~~-~~~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
++...-.. ..++... ..+..-+..++++.+.++|||||.+.++-
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 98544221 0001100 01112246789999999999999999874
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.51 E-value=2.3e-13 Score=117.65 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=97.0
Q ss_pred ccchhhhcCCCCcccccccchHHH---HhhcccCCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHH
Q 025039 26 PHYWDERFSDEEHYEWLKDYSHFR---HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQER 100 (259)
Q Consensus 26 ~~~w~~~~~~~~~~~w~~~~~~~~---~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~ 100 (259)
.+-|++.+..+..+.+..+...+. ..+...++++.+|||+|||+|..+..+++... .+++++|+|++|++.++++
T Consensus 28 ~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~ 107 (301)
T TIGR03438 28 SELFEQICELPEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA 107 (301)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHH
Confidence 567888877655544333322222 23333455778999999999999999998853 3899999999999999998
Q ss_pred HhhcCCC--CeEEEEcccCC-CcCCCC----ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEE
Q 025039 101 LLLKGYK--EVKVLEADMLD-LPFSND----CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173 (259)
Q Consensus 101 ~~~~~~~--~v~~~~~d~~~-~~~~~~----~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 173 (259)
+.... + ++.++++|+.+ ++.... ...++++..+++++ ...+..++|++++++|+|||.+
T Consensus 108 l~~~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~-------------~~~e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 108 LAADY-PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF-------------TPEEAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred HHhhC-CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCC-------------CHHHHHHHHHHHHHhcCCCCEE
Confidence 76532 2 36678899876 333222 22344444555554 4577889999999999999999
Q ss_pred EEEe
Q 025039 174 ISVS 177 (259)
Q Consensus 174 ~~~~ 177 (259)
++..
T Consensus 174 lig~ 177 (301)
T TIGR03438 174 LIGV 177 (301)
T ss_pred EEec
Confidence 9743
No 88
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.51 E-value=1.9e-13 Score=125.70 Aligned_cols=144 Identities=15% Similarity=0.229 Sum_probs=101.1
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
+.+|||+|||+|.+++.++...+. +++++|+|+.+++.|++++...++. ++.+..+|+.+. .+.++||+|++++++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence 468999999999999998876544 9999999999999999999888764 488999998652 2346899999998753
Q ss_pred eeee-----------CCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE-ecCCccccccccCCCCCCcEEEEEEeC
Q 025039 137 VLFV-----------NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV-SFGQPHFRRPFFNAPQFTWSVEWITFG 203 (259)
Q Consensus 137 ~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (259)
..-. .+...+.....+......+++.+.++|+|||.+++. .+++......++...++.....+.++.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~ 296 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQ 296 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCC
Confidence 2110 011112234456667788999999999999999874 233444444455544444333344443
No 89
>PLN03075 nicotianamine synthase; Provisional
Probab=99.51 E-value=1.3e-13 Score=117.06 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=84.7
Q ss_pred CCCcEEEEcCCCCcch-HHHH-hcCCC-eEEEeeCCHHHHHHHHHHHhh-cCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039 58 PNSSVLELGCGNSRLS-EGLY-NDGIT-AITCIDLSAVAVEKMQERLLL-KGYKE-VKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~-~~l~-~~~~~-~v~~vD~s~~~~~~a~~~~~~-~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
++.+|+|+|||.|.++ +.++ ...++ +++++|+++++++.|++.+.. .++.+ ++|..+|+.+.....+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999987443 3333 34555 899999999999999999854 56654 999999998754334689999998
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+++++ ...+..++++.+.+.|+|||.+++-.
T Consensus 203 -ALi~~-------------dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGM-------------DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -ccccc-------------ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 66554 34678899999999999999999875
No 90
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.51 E-value=1.6e-13 Score=118.69 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=89.9
Q ss_pred CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
.+|||+|||+|.++..++...+. +++++|+|+.+++.|++++..+++. ++.++++|+.+. ++.++||+|++++++-.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 68999999999999999988655 9999999999999999999988875 499999998652 23458999999976521
Q ss_pred ee----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 138 LF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 138 ~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.- ..+...+.....+......+++.+.++|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 10 00111111223445667889999999999999999853
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.50 E-value=2.1e-13 Score=119.89 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=92.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEecce
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKAT 134 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 134 (259)
.+..+||||||+|..+..++...+. .++|+|+++.+++.+.+++...+++++.++++|+..+ .++++++|.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF- 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF- 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-
Confidence 3568999999999999999999776 9999999999999999999998988999999998653 35678899998642
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
..||...++..-....+++.+.++|+|||.+.+.+-
T Consensus 201 --------PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 201 --------PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred --------CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 356754333222346899999999999999999764
No 92
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=1.9e-13 Score=125.37 Aligned_cols=105 Identities=25% Similarity=0.309 Sum_probs=87.9
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~l 135 (259)
++.+|||+|||+|..+..+++.+. +++|+|+++.+++.+++... ..+++.++++|+.. +++++++||+|++..++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 467999999999999999998866 89999999999998765432 23468899999863 45667899999999999
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+++ ......++++++.++|+|||++++.+.
T Consensus 114 ~~l-------------~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 114 MYL-------------SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred HhC-------------CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 887 345678999999999999999998754
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.49 E-value=9.8e-13 Score=108.11 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=82.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...++.++.+..+|..+.....++||+|++...+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 45778999999999999998888765 89999999999999999999888878999999986532234689999986544
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.. +.+.+.+.|+|||.+++...
T Consensus 155 ~~---------------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PE---------------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hh---------------------hhHHHHHhcCCCcEEEEEEc
Confidence 22 23557889999999998654
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.49 E-value=5.5e-13 Score=108.46 Aligned_cols=106 Identities=14% Similarity=0.281 Sum_probs=84.9
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCC-cCCCCceeEEE
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-PFSNDCFDVVI 130 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fD~V~ 130 (259)
.+.++.+|||+|||+|.++..++.. +.. +|+++|+++.+++.++++++..++ .++.++.+|+.+. +...+.||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 4567899999999999999988765 333 899999999999999999988874 5688888888663 22235799999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.+.. .....+++.+.++|+|||++++...
T Consensus 117 ~~~~~------------------~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 117 IGGGS------------------EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ECCCc------------------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 75421 3456889999999999999997543
No 95
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=6.4e-13 Score=113.38 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=89.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|..+..++...+. +++++|+++.+++.+++++......++.+..+|+.+. ...++||+|++++++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 46789999999999999999988754 9999999999999999998722334689999998653 235689999998775
Q ss_pred eeee-----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 136 EVLF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 136 ~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
...- ..+...+....++......+++++.++|+|||.+++.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 3210 0000111122345566788999999999999999985
No 96
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.48 E-value=4.8e-13 Score=113.49 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=93.5
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
...++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++++..++.++.+.+.|...++...+.||.|++.
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 346788999999999999999888632 289999999999999999999999878899999987655444579999976
Q ss_pred ceee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 133 ATME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 133 ~~l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.+-. .+..++...|.-.++.. ....++|+.+.++|||||++++.+++.
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4321 11122222232222222 123569999999999999999988764
No 97
>PRK14968 putative methyltransferase; Provisional
Probab=99.48 E-value=1e-12 Score=105.63 Aligned_cols=121 Identities=22% Similarity=0.316 Sum_probs=89.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
.++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+..+ +.+..+|+.+. +....||+|+++.+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence 4678999999999999999998865 99999999999999999988777654 78888888763 34458999998876
Q ss_pred eeeeeeCC------CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 135 MEVLFVNS------GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 135 l~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+....... ...+.....+......+++++.++|+|||.++++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 53210000 0000001112345678999999999999999887543
No 98
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=1.4e-12 Score=107.82 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=78.5
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEE
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVV 129 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V 129 (259)
.+.++.+|||+|||+|..+..+++.... +|+++|+++.|++.+.++++.. +++.++.+|+... ++. ++||+|
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 3458899999999999999999987433 8999999999999888776543 4788888888652 122 469999
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++... .......+++++.++|||||.+++.
T Consensus 146 ~~d~~-----------------~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 146 YQDVA-----------------QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EECCC-----------------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 85321 1123345789999999999999993
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.47 E-value=8.1e-13 Score=107.30 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~ 134 (259)
.++.+|||+|||+|.++..+++..+. +++++|+++.+++.++++++..+..+++++.+|+.+ +......+|.++...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 46789999999999999999876543 999999999999999999988887779999988754 221112356655321
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
......+++++.++|+|||.+++.....
T Consensus 118 ------------------~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 118 ------------------GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred ------------------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 0234688999999999999999987654
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=1.3e-12 Score=118.26 Aligned_cols=123 Identities=19% Similarity=0.323 Sum_probs=93.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEec
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEK 132 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~ 132 (259)
..++.+|||+|||+|..+..+++.+.. +|+++|+++.+++.++++++..++ +++++++|+.+++ +..++||.|+++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEEC
Confidence 457899999999999999999988653 899999999999999999998886 4788899987653 235689999976
Q ss_pred ceee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 133 ATME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 133 ~~l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.+.. .+...+...|...+... ....+++..+.++|+|||.+++.+++
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5432 12222333344332222 23467899999999999999998864
No 101
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.47 E-value=3.5e-13 Score=111.55 Aligned_cols=107 Identities=25% Similarity=0.337 Sum_probs=89.4
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~ 136 (259)
.+.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+..++.+...|+.+.+.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 478999999999999999988877 7999999999999999988776654578888888765533 36899999988886
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+. .+...+++.+.++|+|||.+++.+...
T Consensus 124 ~~---------------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 124 HV---------------PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hC---------------CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 65 456789999999999999999876543
No 102
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.46 E-value=1.2e-14 Score=114.25 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=99.8
Q ss_pred EEeeCCHHHHHHHHHHHhhcC---CCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHH
Q 025039 85 TCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLE 161 (259)
Q Consensus 85 ~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (259)
+|+|+|+.|++.|+++..... ..+++++++|+.++++++++||+|++..+++++ .+..++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---------------~d~~~~l~ 65 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---------------VDRLRAMK 65 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---------------CCHHHHHH
Confidence 489999999999987764322 235899999999999888899999998888765 56789999
Q ss_pred HHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEEEEEeCCCCCchhhhhhccCCCCCCcccccc
Q 025039 162 GVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFH 241 (259)
Q Consensus 162 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (259)
++.++|||||.+++.+++.+... +......|.... ..+.-+.. ..... .| .++..++..|.
T Consensus 66 ei~rvLkpGG~l~i~d~~~~~~~---~~~~~~~~~~~~-----------~~~~~~~~-~~~~~-~y---~yl~~si~~f~ 126 (160)
T PLN02232 66 EMYRVLKPGSRVSILDFNKSNQS---VTTFMQGWMIDN-----------VVVPVATV-YDLAK-EY---EYLKYSINGYL 126 (160)
T ss_pred HHHHHcCcCeEEEEEECCCCChH---HHHHHHHHHccc-----------hHhhhhHH-hCChH-HH---HhHHHHHHHCc
Confidence 99999999999999988765421 111111111100 11111111 11121 23 33888899999
Q ss_pred cccccccccccccCCCC
Q 025039 242 EELEGEDYIFRTNIDEM 258 (259)
Q Consensus 242 ~~~~~~~~~~~~~~~~~ 258 (259)
...+..+.|+++||.++
T Consensus 127 ~~~el~~ll~~aGF~~~ 143 (160)
T PLN02232 127 TGEELETLALEAGFSSA 143 (160)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999999999875
No 103
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1e-12 Score=119.41 Aligned_cols=124 Identities=21% Similarity=0.278 Sum_probs=93.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.++++++..|+.++.+.++|+.++. +.++||+|++..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 45778999999999999988887531 289999999999999999999999877999999998765 456899999643
Q ss_pred e---eeeeeeCCCCCCCCCchhHH----HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 134 T---MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 134 ~---l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+ ...+...+...|...++... ....+|..+.++|+|||++++.+++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 11222223333443322222 34578999999999999999998765
No 104
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1e-12 Score=105.53 Aligned_cols=111 Identities=23% Similarity=0.227 Sum_probs=89.9
Q ss_pred chHHHHhhc-ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC
Q 025039 45 YSHFRHLVQ-PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN 123 (259)
Q Consensus 45 ~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 123 (259)
......++. ..+.++.+|||||||+|+.+..|++... +|+.+|..+...+.|+++++..++.++.+.++|...--.+.
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 333444444 2346889999999999999999999977 99999999999999999999999989999999998743355
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
..||.|+.......+ =+.+.+.|++||++++..
T Consensus 137 aPyD~I~Vtaaa~~v---------------------P~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 137 APYDRIIVTAAAPEV---------------------PEALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCcCEEEEeeccCCC---------------------CHHHHHhcccCCEEEEEE
Confidence 789999987655432 244667899999999864
No 105
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.45 E-value=1.8e-13 Score=108.23 Aligned_cols=104 Identities=27% Similarity=0.403 Sum_probs=82.9
Q ss_pred hhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C-cCCCCceeE
Q 025039 51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDV 128 (259)
Q Consensus 51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~ 128 (259)
.+...++++.+|||+|||.|.++.+|.+....+..|+|++++.+..+.++ .+.++++|+.+ + .+++++||.
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccE
Confidence 44556788999999999999999999885333899999999999888775 57889999976 3 378999999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
|+++.+++++ ..+..+|+++.|+ |...++..++
T Consensus 79 VIlsqtLQ~~---------------~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAV---------------RRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred EehHhHHHhH---------------hHHHHHHHHHHHh---cCeEEEEecC
Confidence 9999999766 6677888888655 5566655443
No 106
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=1.1e-12 Score=118.58 Aligned_cols=125 Identities=13% Similarity=0.165 Sum_probs=93.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcC-C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEec
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEK 132 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 132 (259)
..++.+|||+|||+|..+.++++.. . .+|+++|+++.+++.++++++..+++++.+.++|+..++ ...++||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4578899999999999999998863 2 289999999999999999999999877899999987765 335689999975
Q ss_pred ceee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 133 ATME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 133 ~~l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.+-. .+-.++...|...++.. ....++|..+.+.|||||.+++.+++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 4331 11111111222222222 234678999999999999999998864
No 107
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=1.4e-12 Score=118.11 Aligned_cols=125 Identities=23% Similarity=0.317 Sum_probs=94.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVV 129 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V 129 (259)
..++.+|||+|||+|..+.++++.. .. +|+++|+++.+++.+++++...|+.++.++++|+.+++ ...++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 4578899999999999999998863 22 89999999999999999999999888999999988764 335689999
Q ss_pred Eeccee---eeeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 130 IEKATM---EVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 130 ~~~~~l---~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
++..+- ..+...+...|.-.+... ....++|.++.++|||||++++.+++-
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 975331 222222333343222221 124688999999999999999987754
No 108
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.44 E-value=5.9e-13 Score=115.77 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=86.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C--CC-CeEEEEcccCCCc----CCC
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G--YK-EVKVLEADMLDLP----FSN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~--~~-~v~~~~~d~~~~~----~~~ 123 (259)
++.+|||+|||.|..+.-+...+...++|+|++...++.|+++.... . .. ...++.+|..... +..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 78999999999999998888888889999999999999999998221 1 10 2456777776421 232
Q ss_pred --CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 124 --DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 124 --~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
..||+|-|-..+|+.|. +.+....+|.++...|+|||+++..++.....
T Consensus 142 ~~~~FDvVScQFalHY~Fe-----------se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFE-----------SEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TTS-EEEEEEES-GGGGGS-----------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cCCCcceeehHHHHHHhcC-----------CHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 58999999999999873 55788899999999999999999988765433
No 109
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.44 E-value=1.1e-12 Score=108.91 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|..+..+++.+. .++++|+|+.+++.|++++...+. .++.+..+|+. ..+++||+|++..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchh
Confidence 4678999999999999999999887 799999999999999999877665 35888888843 235789999998888
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEE
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 173 (259)
+++ .......+++.+.+.+++++++
T Consensus 138 ~~~-------------~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 138 IHY-------------PQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hcC-------------CHHHHHHHHHHHHhhcCCeEEE
Confidence 665 3456778889888877544443
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.43 E-value=1.7e-12 Score=109.32 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=85.7
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC--CCCceeEEEeccee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF--SNDCFDVVIEKATM 135 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~V~~~~~l 135 (259)
+.+|||+|||+|.++..++...+. +++++|+|+.+++.+++++..++ ++++++|+.+... ..++||+|++++++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999999876544 89999999999999999987665 4778888865321 12579999999876
Q ss_pred eeee-----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.-.- ..+...|....++.+....++..+.++|+|||.+++...
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3110 000011122234455677899999999999999998643
No 111
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=2.7e-12 Score=116.69 Aligned_cols=123 Identities=17% Similarity=0.248 Sum_probs=93.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEe
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIE 131 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~ 131 (259)
..++.+|||+|||+|..+..+++.. .. +++++|+++.+++.++++++..++.++.++++|+.++. ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 3567899999999999999998863 23 89999999999999999999999877999999997753 33 68999998
Q ss_pred cceee---eeeeCCCCCCCCCchhHHH----HHHHHHHHHhcccCCcEEEEEecC
Q 025039 132 KATME---VLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 132 ~~~l~---~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
..+.. .+...+...|...+..... ..++|..+.++|||||.+++.+++
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 75421 2222233334433333222 357899999999999999987765
No 112
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.43 E-value=8e-13 Score=108.28 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCCCc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDC 125 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 125 (259)
++++.+|||+|||+|..+..+++.. .. .|+++|+++. ...+++.++++|+.+.+ +..++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 5678899999999999999998874 32 8999999981 12346899999998742 45678
Q ss_pred eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
||+|+++...+.. +.+....+........+++.+.++|+|||.+++..+....
T Consensus 118 ~D~V~S~~~~~~~----g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 118 VQVVMSDMAPNMS----GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CCEEecCCCCccC----CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 9999997654332 1100000001112357899999999999999997776543
No 113
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.43 E-value=9.8e-13 Score=109.59 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=87.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+. .+.+...++.+.+ ...+.||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4678999999999999999998876 899999999999999998776554 5677777776653 234689999998877
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
++. .+...+++.+.++|+|||.+++..+.
T Consensus 125 ~~~---------------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 125 EHV---------------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred hcc---------------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 655 45568899999999999999987654
No 114
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.42 E-value=3.8e-12 Score=110.11 Aligned_cols=99 Identities=22% Similarity=0.249 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....+ ..++.+...|+..+ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 568999999999999999999887 89999999999999999976542 23467888887553 4689999999
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
.+++|+ ..+....+++.+.+ +.+||.++
T Consensus 220 ~vL~H~-------------p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHY-------------PQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEec-------------CHHHHHHHHHHHHh-hcCCEEEE
Confidence 888775 23445567777775 45665544
No 115
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.42 E-value=2.7e-12 Score=102.63 Aligned_cols=112 Identities=22% Similarity=0.332 Sum_probs=89.1
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecceeee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~~ 137 (259)
+.-|||||||+|..+..+.+.|. .++|+|+|+.|++.|.++-- .-.++.+|+-+ +|+..++||-+++...+..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 57899999999999999999997 89999999999999997421 12566777754 7899999999999888877
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
++....... ++...+..++..+..+|++|+..++--+-.
T Consensus 125 LcnA~~s~~----~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 125 LCNADKSLH----VPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ecccCcccc----ChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 654433222 244567889999999999999999865543
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.41 E-value=4.5e-12 Score=114.65 Aligned_cols=124 Identities=15% Similarity=0.251 Sum_probs=90.0
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEE--EEcccCCCcC--CCCceeEEE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKV--LEADMLDLPF--SNDCFDVVI 130 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~--~~~d~~~~~~--~~~~fD~V~ 130 (259)
..++.+|||+|||+|..+.++++.... +++++|+++.+++.++++++..++. +.+ ..+|....+. ..++||.|+
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEE
Confidence 457889999999999999999886433 9999999999999999999988875 444 5666654432 456899999
Q ss_pred eccee---eeeeeCCCCCCCCCchhHH----HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 131 EKATM---EVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 131 ~~~~l---~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+..+- ..+...+...|...++... ...++|.++.++|||||.+++.+++-
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 65321 1122223333443332222 24689999999999999999988764
No 117
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.41 E-value=1.2e-11 Score=100.31 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-cCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 135 (259)
.++.+|||+|||+|.+++.++..+..+|+++|.++.+++.++++++.+++.++.++++|+.+. +....+||+|++++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 356899999999999999766666569999999999999999999988877799999998663 2223469999998885
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHh--cccCCcEEEEEecC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSFG 179 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 179 (259)
.. .....+++.+.. +|+|+|++++....
T Consensus 132 ~~----------------g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK----------------GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC----------------ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 32 123345555544 58999988876443
No 118
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.40 E-value=5.8e-12 Score=90.02 Aligned_cols=102 Identities=32% Similarity=0.527 Sum_probs=82.6
Q ss_pred cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecceeeeee
Q 025039 61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEVLF 139 (259)
Q Consensus 61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~~~~ 139 (259)
+|+|+|||+|..+..+++....+++++|+++.+++.+++.........+.+...|+.+... ...++|+|+++.+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 5899999999999999884333999999999999999854444444568888888887553 45689999999887652
Q ss_pred eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
......+++.+.+.|+|||.+++.
T Consensus 80 -------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 267789999999999999999875
No 119
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.39 E-value=1.8e-12 Score=115.61 Aligned_cols=135 Identities=15% Similarity=0.166 Sum_probs=96.9
Q ss_pred ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCC
Q 025039 41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLD 118 (259)
Q Consensus 41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~ 118 (259)
|+-..+.....+.. +.++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++++..++++ +++++++|+.+
T Consensus 204 ~flDqr~~R~~~~~-~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~ 282 (396)
T PRK15128 204 YYLDQRDSRLATRR-YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK 282 (396)
T ss_pred cChhhHHHHHHHHH-hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHH
Confidence 44333333444443 3467899999999999998877666559999999999999999999999875 58999999877
Q ss_pred Cc----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 119 LP----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 119 ~~----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
.. ...++||+|+++++...- ... ...........++..+.++|+|||.+++++++...
T Consensus 283 ~l~~~~~~~~~fDlVilDPP~f~~---~k~---~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 283 LLRTYRDRGEKFDVIVMDPPKFVE---NKS---QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred HHHHHHhcCCCCCEEEECCCCCCC---ChH---HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 42 124589999998775211 000 00011234567777889999999999998876543
No 120
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.39 E-value=1.1e-12 Score=110.33 Aligned_cols=125 Identities=26% Similarity=0.357 Sum_probs=99.9
Q ss_pred hhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC--C----CeEEEEcccCC------
Q 025039 51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--K----EVKVLEADMLD------ 118 (259)
Q Consensus 51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~----~v~~~~~d~~~------ 118 (259)
++..+.+++..++++|||.|..++-+.++|...++|+||....++.|+++.....- . .+.++.+|-..
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 44456678899999999999999999999998999999999999999998754421 1 25677877654
Q ss_pred CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcccccc
Q 025039 119 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRP 186 (259)
Q Consensus 119 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 186 (259)
+++++.+||+|-|-.++|+.|. +.+....+|.++.+.|+|||+++-..+.....+..
T Consensus 190 ~e~~dp~fDivScQF~~HYaFe-----------tee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~r 246 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFE-----------TEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKR 246 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeec-----------cHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHH
Confidence 2334555999999999999873 55788899999999999999999887766544433
No 121
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.36 E-value=2.6e-12 Score=104.14 Aligned_cols=93 Identities=29% Similarity=0.429 Sum_probs=73.4
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C-cCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~V~~~ 132 (259)
.++++.+|||+|||+|.++..+++.....++|+|+++.+++.++++ ++.++++|+.+ + ++++++||+|+++
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 4567789999999999999988776443789999999999988652 46777888765 3 3556789999999
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 169 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 169 (259)
.+++++ .+...+++++.+.+++
T Consensus 83 ~~l~~~---------------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 83 QTLQAT---------------RNPEEILDEMLRVGRH 104 (194)
T ss_pred hHhHcC---------------cCHHHHHHHHHHhCCe
Confidence 999876 4566788888776553
No 122
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.36 E-value=4.3e-12 Score=121.16 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=99.1
Q ss_pred ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCC
Q 025039 41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLD 118 (259)
Q Consensus 41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~ 118 (259)
++-..+....++.... ++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.+++++..+++. +++++++|+.+
T Consensus 522 ~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~ 600 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA 600 (702)
T ss_pred ECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH
Confidence 3433444445555433 57899999999999999999987668999999999999999999999885 58999999876
Q ss_pred Cc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 119 LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 119 ~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.. ...++||+|+++++....... .........+...++..+.++|+|||.+++.+...
T Consensus 601 ~l~~~~~~fDlIilDPP~f~~~~~----~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 601 WLKEAREQFDLIFIDPPTFSNSKR----MEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred HHHHcCCCcCEEEECCCCCCCCCc----cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 32 114689999998764221000 00001234567789999999999999998876544
No 123
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.36 E-value=3.7e-12 Score=103.93 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
++++.+|||+|||+|..+..++.. +.. +|+++|.++..++.|++++...+..++.+.++|..........||.|++..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 678999999999999999999887 433 799999999999999999999998889999999876433456899999876
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
....+ -..+.+.|++||++++.
T Consensus 150 a~~~i---------------------p~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 150 AVPEI---------------------PEALLEQLKPGGRLVAP 171 (209)
T ss_dssp BBSS-----------------------HHHHHTEEEEEEEEEE
T ss_pred ccchH---------------------HHHHHHhcCCCcEEEEE
Confidence 65322 24467789999999985
No 124
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.34 E-value=6.5e-12 Score=101.30 Aligned_cols=110 Identities=26% Similarity=0.414 Sum_probs=77.2
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCCC
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSND 124 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~ 124 (259)
.+.++.+|||+|||+|.++..+++... . +++++|+++.+ ..+++.++++|+.+.. .+.+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 356789999999999999998887642 2 79999999854 1235788888876532 3456
Q ss_pred ceeEEEecceeeeeeeCCCCCCC-CCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+||+|+++++.+.. + .|. ..+........++..+.++|+|||++++..+..
T Consensus 98 ~~D~V~~~~~~~~~----g-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 98 KVDVVMSDAAPNIS----G-YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CccEEEcCCCCCCC----C-CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 79999986542210 0 011 111223445789999999999999999865543
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=1e-11 Score=107.63 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
++++.+|||+|||+|..+..+++.... .|+++|+++.+++.|+++++..+.+++.++++|..+......+||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 457789999999999999999886532 699999999999999999998888779999999876544446799999764
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.+. .....+.+.|+|||.+++..
T Consensus 158 g~~---------------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVD---------------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chH---------------------HhHHHHHHhcCCCCEEEEEe
Confidence 332 12334677899999998753
No 126
>PHA03411 putative methyltransferase; Provisional
Probab=99.34 E-value=2.1e-11 Score=102.34 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=85.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
...+|||+|||+|.++..++.... .+++++|+++.+++.+++++ +++.++++|+.+... ..+||+|++++++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 457999999999999988877642 39999999999999998864 368899999987653 46899999999987
Q ss_pred eeeeCCCCCCCC---CchhHHH--HHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 137 VLFVNSGDPWNP---QPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
+.-......|.. ....... ..+++..+..+|+|+|.++++-.+.+.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence 652221111110 0001111 357888889999999988877444443
No 127
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.5e-11 Score=96.59 Aligned_cols=77 Identities=25% Similarity=0.308 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
.+.+|+|+|||||.+++.++-.|+.+|+++|+++++++.+++++.+.+ .++.++++|+.++. ..+|+++.|++|..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC---CccceEEECCCCcc
Confidence 677899999999999999999998899999999999999999998843 47999999998865 56899999998865
Q ss_pred e
Q 025039 138 L 138 (259)
Q Consensus 138 ~ 138 (259)
.
T Consensus 121 ~ 121 (198)
T COG2263 121 Q 121 (198)
T ss_pred c
Confidence 4
No 128
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.30 E-value=1.8e-11 Score=102.01 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCcee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFD 127 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD 127 (259)
.++.+|||+|||+|..++.++... .. +++++|+++++++.|+++++..++.+ ++++.+|+.+. + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 467899999999999998888753 23 99999999999999999999998864 89999998763 1 1136899
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+|++.. .......++..+.++|+|||++++-
T Consensus 147 ~VfiDa------------------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDA------------------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECC------------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999632 2256678899999999999998874
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.30 E-value=3.1e-11 Score=95.68 Aligned_cols=78 Identities=21% Similarity=0.387 Sum_probs=67.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .++++++++|+.++++++..||.|+++.++
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~-~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py 87 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAA-RVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPY 87 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCC-eEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCc
Confidence 34678999999999999999999865 999999999999999998764 347899999999887666679999998777
Q ss_pred e
Q 025039 136 E 136 (259)
Q Consensus 136 ~ 136 (259)
+
T Consensus 88 ~ 88 (169)
T smart00650 88 N 88 (169)
T ss_pred c
Confidence 4
No 130
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.29 E-value=8.2e-11 Score=101.15 Aligned_cols=126 Identities=19% Similarity=0.231 Sum_probs=101.6
Q ss_pred hHHHHhhc--ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCCcCC
Q 025039 46 SHFRHLVQ--PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFS 122 (259)
Q Consensus 46 ~~~~~~l~--~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~ 122 (259)
+.+...+. ..+.+|..|||.-||||..++.+.-.|. +++|.|++..|++-++.|++..++....+... |+..++++
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence 34444444 3456889999999999999999999998 99999999999999999999998877766666 99999988
Q ss_pred CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.++|.|++.+++.-.....+. .-.+...++++.+.++|++||++++..+
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~------~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGE------GLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccc------cHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 7789999998877543211111 1135578899999999999999998766
No 131
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.29 E-value=6.3e-12 Score=101.99 Aligned_cols=104 Identities=15% Similarity=0.286 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
...++|+|||+|..++.+++.. .+|+|+|+|+.|++.+++.....-.. ..+....++.++.-.++++|+|+|..++|.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 3489999999998888888774 49999999999999998764322211 122333333343334789999999999987
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCc-EEEEEecC
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFG 179 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~ 179 (259)
+ ++.++.+++.++||+.| .+.+=.+.
T Consensus 113 F----------------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 F----------------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h----------------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 6 77899999999998877 54443333
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.29 E-value=1.8e-11 Score=99.03 Aligned_cols=110 Identities=25% Similarity=0.366 Sum_probs=83.9
Q ss_pred cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-Cc--CCCCceeEEEecceee
Q 025039 61 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LP--FSNDCFDVVIEKATME 136 (259)
Q Consensus 61 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~fD~V~~~~~l~ 136 (259)
.+||||||.|..+..+|...+. .++|+|+....+..+.+++...+++|+.++++|+.. +. ++++++|.|+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~---- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN---- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE----
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe----
Confidence 8999999999999999999887 999999999999999999999999999999999877 22 445677777643
Q ss_pred eeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEecC
Q 025039 137 VLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+.+||.+..+... -...+++.+.++|+|||.+.+.+-.
T Consensus 96 -----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 96 -----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp -----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred -----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 3467765433322 2468999999999999999997643
No 133
>PLN02672 methionine S-methyltransferase
Probab=99.28 E-value=2.4e-11 Score=118.83 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=101.6
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC----------------CCeEEEEcccCCCcC
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY----------------KEVKVLEADMLDLPF 121 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~ 121 (259)
+.+|||+|||+|.+++.+++..+. +++++|+|+.+++.|++|+..+++ ++++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999988764 999999999999999999987542 258999999976431
Q ss_pred C-CCceeEEEecceee------eeeeC--------------CCCCCCC---CchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 122 S-NDCFDVVIEKATME------VLFVN--------------SGDPWNP---QPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 122 ~-~~~fD~V~~~~~l~------~~~~~--------------~~~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
. ...||+|+++.++- .+-.. +...+.. .+.+..-.++++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999998752 11000 0011111 25667778999999999999999988743
Q ss_pred -cCCccccc-cccCCCCCCcEEEEEE
Q 025039 178 -FGQPHFRR-PFFNAPQFTWSVEWIT 201 (259)
Q Consensus 178 -~~~~~~~~-~~~~~~~~~~~~~~~~ 201 (259)
..+..... .++...++.....|..
T Consensus 279 G~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 279 GGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred CccHHHHHHHHHHHHCCCCeeEEeee
Confidence 33444444 4666666655555543
No 134
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=4.8e-11 Score=101.20 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=85.1
Q ss_pred cccccchHHHHhhc-----ccCCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEE
Q 025039 40 EWLKDYSHFRHLVQ-----PHIKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVL 112 (259)
Q Consensus 40 ~w~~~~~~~~~~l~-----~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~ 112 (259)
.|-...+.+...+. ..+.++.+|||+|||+|..+.++++.. .. .|+++|+++.+.+.+.+.+... +++.++
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I 186 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPI 186 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEE
Confidence 36666666665443 235688999999999999999999884 33 8999999998765555544332 478888
Q ss_pred EcccCCC---cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 113 EADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 113 ~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
..|+... ....++||+|++... ...+...++.++.++|||||.|++.
T Consensus 187 ~~Da~~p~~y~~~~~~vDvV~~Dva-----------------~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 187 IEDARYPQKYRMLVPMVDVIFADVA-----------------QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ECCccChhhhhcccCCCCEEEEeCC-----------------CcchHHHHHHHHHHhccCCCEEEEE
Confidence 8898642 122357999987542 1134556677899999999999994
No 135
>PHA03412 putative methyltransferase; Provisional
Probab=99.28 E-value=5.2e-11 Score=97.79 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhcC----CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDG----ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
.+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|+++. .++.+..+|+....+ +++||+|++|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECC
Confidence 46799999999999999888752 128999999999999999875 357889999976554 46899999999
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 172 (259)
++...-... +.....+......++..+.+++++|+.
T Consensus 123 PY~~~~~~d---~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSD---FKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccc---cCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 986531110 001112334466789999997777775
No 136
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.3e-11 Score=99.98 Aligned_cols=111 Identities=24% Similarity=0.260 Sum_probs=92.4
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEE
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVI 130 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~ 130 (259)
..+.++.+|||.|.|+|.++..|+.. |+. +|+.+|+.++.++.|++|++..++.+ +++..+|+.+...+. .||.|+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence 45779999999999999999999974 554 99999999999999999999998877 889999998865544 788888
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccc
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRR 185 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 185 (259)
. |.. ++-++++.+.++|+|||.+++..+.-.+...
T Consensus 169 L---------Dmp-----------~PW~~le~~~~~Lkpgg~~~~y~P~veQv~k 203 (256)
T COG2519 169 L---------DLP-----------DPWNVLEHVSDALKPGGVVVVYSPTVEQVEK 203 (256)
T ss_pred E---------cCC-----------ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence 4 223 4447999999999999999998776554443
No 137
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.26 E-value=4.1e-11 Score=100.39 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=84.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.+..+|+|+|+|.|..+..++++.++ +++.+|. |.+++.+++ .++++++.+|+++ +++. +|+|+...++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc--ccceeeehhh
Confidence 45578999999999999999999888 9999998 889999888 2579999999984 5554 9999999999
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC--cEEEEEecC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD--GLFISVSFG 179 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~ 179 (259)
|.+ +.++...+|+++++.|+|| |+|++.+.-
T Consensus 169 h~~-------------~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 169 HDW-------------SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGS--------------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhc-------------chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 887 6788999999999999999 999998753
No 138
>PRK00811 spermidine synthase; Provisional
Probab=99.25 E-value=5.2e-11 Score=101.98 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccCCC-cCCCCceeEE
Q 025039 57 KPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDL-PFSNDCFDVV 129 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~fD~V 129 (259)
+.+.+||++|||+|..+..+++. +..+|+++|+++.+++.|++.+...+ -++++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45689999999999999999887 44489999999999999999875421 24689999998763 2235689999
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++...- ++.+ ...--..++++.+++.|+|||++++.
T Consensus 155 i~D~~d---------p~~~--~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTD---------PVGP--AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCC---------CCCc--hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 975321 1111 01112368899999999999999874
No 139
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.25 E-value=2.1e-11 Score=100.38 Aligned_cols=110 Identities=21% Similarity=0.345 Sum_probs=91.4
Q ss_pred CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEeccee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKATM 135 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l 135 (259)
..+||||||.|..+..+|+..+. .++|+|+....+..|.+++...+++|+.+++.|+..+- .++++.|-|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~----- 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY----- 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE-----
Confidence 48999999999999999999998 99999999999999999999999889999999987632 2334666555
Q ss_pred eeeeeCCCCCCCCCchhHHH--HHHHHHHHHhcccCCcEEEEEec
Q 025039 136 EVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
..+.+||.+..++... ...+++.+.+.|+|||.+.+.|-
T Consensus 125 ----i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 125 ----INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred ----EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 4456889876554333 46899999999999999999763
No 140
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.25 E-value=5.8e-11 Score=104.81 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=105.6
Q ss_pred ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC
Q 025039 41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD 118 (259)
Q Consensus 41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~ 118 (259)
++-..+.....+...+. |++||++.|=||..+++++..|..+|+.||.|..+++.|++|++.++++. +.++++|+++
T Consensus 201 fFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 201 FFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred eeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence 33444556666666666 99999999999999999999998899999999999999999999999854 7899999987
Q ss_pred Cc----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 119 LP----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 119 ~~----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
.- -...+||+|+..++-..= .....| ....+...++..+.++|+|||.+++++++...
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r--~k~~~~----~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFAR--SKKQEF----SAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred HHHHHHhcCCcccEEEECCccccc--Ccccch----hHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 32 234589999987653111 111111 34567889999999999999999999877643
No 141
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.25 E-value=4.1e-11 Score=96.21 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=96.7
Q ss_pred hHHHHhhcccCCCCCc-EEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCCCc--
Q 025039 46 SHFRHLVQPHIKPNSS-VLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP-- 120 (259)
Q Consensus 46 ~~~~~~l~~~~~~~~~-vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~-- 120 (259)
.-+...+...+++... |||||||||..+.++++..+. ...-.|+++..+...+......+.+++ .-+..|+.+.+
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 3466777777776666 999999999999999999887 888999999998888887777776663 34556666532
Q ss_pred C------CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 121 F------SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 121 ~------~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
. ..++||.|+|.+++|.. .......+++.+.++|++||.|+++.+
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~-------------p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHIS-------------PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred cccccccCCCCcceeeehhHHHhc-------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 2 24589999999999877 557889999999999999999998754
No 142
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.8e-10 Score=88.54 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=105.2
Q ss_pred CCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 59 NSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
...+||||||+|..+.+|++. +++ .+.++|+++.+++..++.++.++. ++..++.|+...- ..++.|+++.++++-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l-~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGL-RNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhh-ccCCccEEEECCCcC
Confidence 678999999999999999886 444 788999999999999999888775 5788888887632 348999999887652
Q ss_pred eeeeCCC--------CCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC--ccccccccCCCCCCcEEEEEEe-CCe
Q 025039 137 VLFVNSG--------DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ--PHFRRPFFNAPQFTWSVEWITF-GDG 205 (259)
Q Consensus 137 ~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (259)
- .++. ..|.-+.++.+...+++..+-.+|.|.|+++++.... ++-.-.++...++.....+... +.+
T Consensus 122 p--t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 122 P--TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRKAGGE 199 (209)
T ss_pred c--CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEEecCCc
Confidence 1 1111 1255556677778889999999999999999987643 2222224455555555444433 333
Q ss_pred EEEEE
Q 025039 206 FHYFF 210 (259)
Q Consensus 206 ~~~~~ 210 (259)
+.+.+
T Consensus 200 ~l~il 204 (209)
T KOG3191|consen 200 TLSIL 204 (209)
T ss_pred eEEEE
Confidence 33333
No 143
>PRK04457 spermidine synthase; Provisional
Probab=99.24 E-value=6.3e-11 Score=100.35 Aligned_cols=113 Identities=16% Similarity=0.287 Sum_probs=84.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCC-cCCCCceeEEEecc
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-PFSNDCFDVVIEKA 133 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 133 (259)
+++.+|||+|||+|.++..+++..+. +++++|+++++++.|++++...+. ++++++.+|+.+. ....++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45689999999999999999887665 899999999999999998865543 4689999998653 22235799999742
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
++.. ..+ ..-...++++.+.++|+|||++++..+..
T Consensus 145 -~~~~----~~~------~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 -FDGE----GII------DALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred -CCCC----CCc------cccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 1110 000 00123689999999999999999865543
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.21 E-value=8.7e-11 Score=106.86 Aligned_cols=101 Identities=19% Similarity=0.335 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEEEec
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEK 132 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~ 132 (259)
.++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|++++..+++.++++.++|+.+. ++.+++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4678999999999999999998875 9999999999999999999988887899999998652 2334679999987
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
++.. .....++.+.+ ++|++++++..
T Consensus 375 PPr~------------------g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPRA------------------GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCc------------------ChHHHHHHHHh-cCCCeEEEEEe
Confidence 6542 12345555555 68888777653
No 145
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.21 E-value=7.5e-11 Score=96.13 Aligned_cols=104 Identities=21% Similarity=0.298 Sum_probs=87.3
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE-cccCCC-c-CCCCceeEE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLE-ADMLDL-P-FSNDCFDVV 129 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~-~d~~~~-~-~~~~~fD~V 129 (259)
..++++|||+|++.|..+++++...+ + +++.+|+++++.+.|++++++.|+.+ +..+. +|..+. . ...++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 34788999999999999999999866 4 89999999999999999999999977 77777 476552 2 345899999
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+. ++ ...+.+.+++.+.++|+|||++++-.
T Consensus 137 FI----Da--------------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 137 FI----DA--------------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EE----eC--------------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 94 43 34677899999999999999999853
No 146
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.18 E-value=6.1e-11 Score=101.48 Aligned_cols=106 Identities=19% Similarity=0.333 Sum_probs=85.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
+-+++.|||+|||+|.++++.+++|..+|+++|.|.-+ +.|++.+..+++.+ ++++.+.+.++.+|.+++|+|++-.+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 44789999999999999999999998899999987654 99999999999987 89999988887666789999998755
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
=..++. ...+..+|-.=-+.|+|||.++
T Consensus 137 Gy~Ll~------------EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLY------------ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHH------------hhhhhhhhhhhhhccCCCceEc
Confidence 443321 1344455555568999999987
No 147
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.18 E-value=9.4e-11 Score=95.40 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=82.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCceeE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFDV 128 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD~ 128 (259)
++.+|||+||++|..++++++.-+. +++.+|++++..+.|+++++..|+.+ ++++.+|+.+. + .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 6789999999999999999987442 99999999999999999999988864 99999998762 1 11357999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
|+... ...+...+++.+.++|+|||++++-.
T Consensus 125 VFiDa------------------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA------------------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES------------------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc------------------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99532 33567789999999999999999853
No 148
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.16 E-value=1.2e-10 Score=101.42 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecce
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKAT 134 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~ 134 (259)
++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++.+++++++++++|+.++.. ..+.||+|+++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 468999999999999999999875 999999999999999999999888779999999976432 2357999998755
No 149
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.16 E-value=4.4e-10 Score=90.00 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=85.3
Q ss_pred HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-Cc---CC
Q 025039 48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LP---FS 122 (259)
Q Consensus 48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~---~~ 122 (259)
+...+....-++.+|||+.||+|.+++..+++|..+|+.+|.++.++...+++++..+..+ +.++..|... +. ..
T Consensus 32 lFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~ 111 (183)
T PF03602_consen 32 LFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKK 111 (183)
T ss_dssp HHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHC
T ss_pred HHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhccc
Confidence 4455554313689999999999999999999998899999999999999999999988776 8888888654 21 24
Q ss_pred CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEecCC
Q 025039 123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSFGQ 180 (259)
Q Consensus 123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 180 (259)
...||+|++.+++..- .....++..+. .+|+++|.+++-....
T Consensus 112 ~~~fDiIflDPPY~~~---------------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 112 GEKFDIIFLDPPYAKG---------------LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp TS-EEEEEE--STTSC---------------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCceEEEECCCcccc---------------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 5789999988776432 11466777776 7999999888765443
No 150
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=2.7e-10 Score=92.49 Aligned_cols=110 Identities=16% Similarity=0.324 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcC-----CC----------------------
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG-----YK---------------------- 107 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~---------------------- 107 (259)
...+..+|||||.+|.+++.+++. |...++|+||++..++.|++.++... +.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 346789999999999999999987 44489999999999999999764321 00
Q ss_pred --------CeEEEEc-------ccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039 108 --------EVKVLEA-------DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172 (259)
Q Consensus 108 --------~v~~~~~-------d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 172 (259)
++.+... |+. .+....||+|+|-.+--.+..+ .+++.+.+++.++.++|.|||+
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLN---------wgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLN---------WGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred cccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecc---------cccHHHHHHHHHHHHhhCcCcE
Confidence 1111111 111 1234579999996654444333 2568899999999999999999
Q ss_pred EEEE
Q 025039 173 FISV 176 (259)
Q Consensus 173 l~~~ 176 (259)
|++.
T Consensus 205 LvvE 208 (288)
T KOG2899|consen 205 LVVE 208 (288)
T ss_pred EEEc
Confidence 9984
No 151
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.14 E-value=2e-10 Score=95.70 Aligned_cols=134 Identities=25% Similarity=0.424 Sum_probs=90.9
Q ss_pred ccchhhhcCCCCcccccccchHHHHhh-cccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHh
Q 025039 26 PHYWDERFSDEEHYEWLKDYSHFRHLV-QPHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLL 102 (259)
Q Consensus 26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l-~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~ 102 (259)
.+-|.........+-+-. ++.-++ ...+.||.+|||.|.|+|.++..|++. ++. +|+.+|+.++.++.|+++++
T Consensus 10 ~e~~~~~l~rrtQIiYpk---D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~ 86 (247)
T PF08704_consen 10 PELWTLSLPRRTQIIYPK---DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE 86 (247)
T ss_dssp HHHHHHTS-SSS----HH---HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcceeeCc---hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH
Confidence 455666665544432222 222222 245779999999999999999999976 555 99999999999999999999
Q ss_pred hcCCC-CeEEEEcccCCCcCC---CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc-cCCcEEEEEe
Q 025039 103 LKGYK-EVKVLEADMLDLPFS---NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVS 177 (259)
Q Consensus 103 ~~~~~-~v~~~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 177 (259)
..+++ ++++.+.|+.+-.+. ...+|.|+. |...|| .++..+.++| +|||++.+..
T Consensus 87 ~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL---------Dlp~Pw-----------~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 87 RHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL---------DLPDPW-----------EAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp HTTCCTTEEEEES-GGCG--STT-TTSEEEEEE---------ESSSGG-----------GGHHHHHHHE-EEEEEEEEEE
T ss_pred HcCCCCCceeEecceecccccccccCcccEEEE---------eCCCHH-----------HHHHHHHHHHhcCCceEEEEC
Confidence 99986 489999999653332 246788773 233445 5788899999 8999999987
Q ss_pred cCCcc
Q 025039 178 FGQPH 182 (259)
Q Consensus 178 ~~~~~ 182 (259)
++...
T Consensus 147 P~ieQ 151 (247)
T PF08704_consen 147 PCIEQ 151 (247)
T ss_dssp SSHHH
T ss_pred CCHHH
Confidence 76543
No 152
>PLN02476 O-methyltransferase
Probab=99.14 E-value=2.9e-10 Score=96.21 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=84.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-C----CCCcee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F----SNDCFD 127 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~----~~~~fD 127 (259)
.++++|||+|+++|..+++++...+ . +++++|.+++..+.|+++++..|+. +++++.+|+.+. + + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3578999999999999999988532 2 8999999999999999999999986 499999998662 2 1 135899
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+|+..+ ...+...+++.+.++|+|||.+++-
T Consensus 197 ~VFIDa------------------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA------------------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC------------------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999532 3367789999999999999999874
No 153
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.14 E-value=2.3e-10 Score=92.39 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 138 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 138 (259)
..+.||.|||-|+.+..++...+.+|-.+|++++.++.|++.+....-.-.++.+..+.++..+..+||+|++-.++.|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 47899999999999998877667799999999999999998776532122577788887776455799999999999998
Q ss_pred eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+..+..++|++....|+|+|++++-+
T Consensus 136 -------------TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 136 -------------TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp --------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 78999999999999999999999854
No 154
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.14 E-value=2e-10 Score=91.83 Aligned_cols=108 Identities=21% Similarity=0.335 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-e---------EEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCC
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-A---------ITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSND 124 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~---------v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 124 (259)
..++..|||..||+|.+.++.+..+.. . ++|+|+++++++.+++|+...++.. +.+...|+.++++..+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 457789999999999999988777554 4 8899999999999999999988865 8899999999887678
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 170 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 170 (259)
++|+|+++.++..-... ..+...-...+++++.+++++.
T Consensus 106 ~~d~IvtnPPyG~r~~~-------~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGS-------KKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp BSCEEEEE--STTSHCH-------HHHHHHHHHHHHHHHHCHSTTC
T ss_pred CCCEEEECcchhhhccC-------HHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999887533110 0011233467788899999983
No 155
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=2.5e-09 Score=86.23 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-C-C-CCceeEEEec
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-S-NDCFDVVIEK 132 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~-~-~~~fD~V~~~ 132 (259)
++.+|||++||+|.+++.++.+|..+|+++|.++.+++.++++++..++. +++++++|+.+. . . . ...||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999999999999879999999999999999999988875 488999998552 1 1 1 2248998887
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHH--HhcccCCcEEEEEec
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGV--HRVLKPDGLFISVSF 178 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~ 178 (259)
+++..- ....++..+ ..+|+++|++++...
T Consensus 129 PPy~~~----------------~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFNG----------------ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCCC----------------cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 776321 223334433 347888887776533
No 156
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.14 E-value=4.1e-10 Score=95.80 Aligned_cols=135 Identities=20% Similarity=0.258 Sum_probs=96.7
Q ss_pred ccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEccc
Q 025039 39 YEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADM 116 (259)
Q Consensus 39 ~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~ 116 (259)
..++-..+.....+.... .+++|||+.|=||..+++.+..|..+|+.||.|..+++.+++++..++++ .++++.+|+
T Consensus 105 tGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv 183 (286)
T PF10672_consen 105 TGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV 183 (286)
T ss_dssp TSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H
T ss_pred ceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH
Confidence 345666666677766554 58899999999999999998888779999999999999999999999875 489999998
Q ss_pred CCC-c--CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 117 LDL-P--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 117 ~~~-~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
.+. . ...++||+|++.++-.. .. .+ .-..+..+++..+.++|+|||.+++++++....
T Consensus 184 f~~l~~~~~~~~fD~IIlDPPsF~---k~--~~----~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~ 244 (286)
T PF10672_consen 184 FKFLKRLKKGGRFDLIILDPPSFA---KS--KF----DLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS 244 (286)
T ss_dssp HHHHHHHHHTT-EEEEEE--SSEE---SS--TC----EHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred HHHHHHHhcCCCCCEEEECCCCCC---CC--HH----HHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence 762 1 13468999998765321 10 11 123577889999999999999999888766433
No 157
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.12 E-value=2.3e-11 Score=97.95 Aligned_cols=99 Identities=25% Similarity=0.454 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l 135 (259)
+-.++||+|||||..+..+..+.. +++|+|+|+.|+++|.++-. + -+..+.++..+. ...+.||+|++..++
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~---Y--D~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGL---Y--DTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccc---h--HHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 357999999999999999988866 89999999999999988621 1 122333333221 345789999998888
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
-++ ..+..++-.+..+|+|||.|.++.
T Consensus 199 ~Yl---------------G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYL---------------GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hhh---------------cchhhHHHHHHHhcCCCceEEEEe
Confidence 766 677889999999999999999864
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.12 E-value=4.6e-10 Score=95.59 Aligned_cols=110 Identities=21% Similarity=0.287 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCC-cCCCCceeEEE
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVI 130 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~V~ 130 (259)
+.+.+||++|||+|..+..+++... .+++++|+++.+++.+++.+...+ .+++++..+|..+. ....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999998888763 389999999999999999875432 23577888777552 22246899999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+...... .+ ...--..++++.+.++|+|||++++..
T Consensus 151 ~D~~~~~---------~~--~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPV---------GP--AETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCC---------Cc--ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 7543110 00 000113688999999999999999863
No 159
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.11 E-value=8e-10 Score=100.39 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=91.4
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEe
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIE 131 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~ 131 (259)
...++.+|||+|||+|.-+.++++...+ .++++|+++..++.++++++..|+.++.+...|...+. ...+.||.|++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 3468899999999999999999887422 89999999999999999999999988888888887653 22357999994
Q ss_pred cce---eeeeeeCCCCCCCCCchh----HHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 132 KAT---MEVLFVNSGDPWNPQPET----VTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 132 ~~~---l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
..+ ...+..++...|.-.++. .....++|..+.+.|||||.|+.++++
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 321 111111222222211122 223467999999999999999998875
No 160
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.11 E-value=2.3e-10 Score=91.64 Aligned_cols=154 Identities=16% Similarity=0.278 Sum_probs=85.2
Q ss_pred hhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC
Q 025039 29 WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE 108 (259)
Q Consensus 29 w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 108 (259)
|++=|+.+...|...+...+...+.. .+++..|.|+|||.+.++..+. .+. +|..+|+.+. +
T Consensus 44 YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~---------------n 105 (219)
T PF05148_consen 44 YHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP---------------N 105 (219)
T ss_dssp HHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------S
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccCC---------------C
Confidence 34445443333333444556666663 3556899999999999996553 333 7999999752 3
Q ss_pred eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcccccccc
Q 025039 109 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF 188 (259)
Q Consensus 109 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 188 (259)
-.++..|+...|++++++|++++.-++- | .+...++.++.|+|||||.|.+.+....-.....|
T Consensus 106 ~~Vtacdia~vPL~~~svDv~VfcLSLM------G----------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F 169 (219)
T PF05148_consen 106 PRVTACDIANVPLEDESVDVAVFCLSLM------G----------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQF 169 (219)
T ss_dssp TTEEES-TTS-S--TT-EEEEEEES---------S----------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHH
T ss_pred CCEEEecCccCcCCCCceeEEEEEhhhh------C----------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHH
Confidence 3467789999999999999988644331 1 47789999999999999999998764321111111
Q ss_pred -C-CCCCCcEEEEEEeCCeEEEEEEEEEeC
Q 025039 189 -N-APQFTWSVEWITFGDGFHYFFYILRKG 216 (259)
Q Consensus 189 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (259)
. -..+++.....+..+..++.+...+..
T Consensus 170 ~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 170 IKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp HHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred HHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 1 122455666666666655555555444
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.10 E-value=2.4e-09 Score=82.35 Aligned_cols=116 Identities=22% Similarity=0.403 Sum_probs=93.4
Q ss_pred HHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--
Q 025039 47 HFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-- 120 (259)
Q Consensus 47 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 120 (259)
.+.+.+...+ ..+.-|||+|.|||.++..+.++|.. .++++|+|++.+....+.. +.+.++++|+.++.
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~ 109 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHH
Confidence 3444444444 35678999999999999999999865 8999999999999998875 46778999988754
Q ss_pred ---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 121 ---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 121 ---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.++..||.|+|.-++-.+ ......++|+.+...|.+||.++..++++
T Consensus 110 l~e~~gq~~D~viS~lPll~~-------------P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNF-------------PMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HhhcCCCeeeeEEeccccccC-------------cHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 456789999997665433 44667899999999999999999988883
No 162
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.10 E-value=4.3e-10 Score=90.84 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCc----chHHHHhc-----CCC-eEEEeeCCHHHHHHHHHHH-------------------hhcC---
Q 025039 58 PNSSVLELGCGNSR----LSEGLYND-----GIT-AITCIDLSAVAVEKMQERL-------------------LLKG--- 105 (259)
Q Consensus 58 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~-~v~~vD~s~~~~~~a~~~~-------------------~~~~--- 105 (259)
+.-+|+..||++|. +++.+.+. +.. +++|+|+|+.+++.|++-. ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999996 45555551 223 8999999999999998731 0000
Q ss_pred -----C-CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 106 -----Y-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 106 -----~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+ ..|+|...|+.+.....+.||+|+|.+++-++ +.+...++++.+.+.|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-------------~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-------------DPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--------------HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-------------CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1 34888889988833345789999999999877 6678899999999999999999974
No 163
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=1.2e-09 Score=90.30 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=89.4
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc----CC-CcCCCCceeEEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM----LD-LPFSNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~-~~~~~~~fD~V~ 130 (259)
.+..|||+|||+|..+..++..-++ +++++|.|+.++..|.+|+...++.+ +.+++.++ .. .+...+..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4568999999999999999887666 99999999999999999999888765 66664433 22 234568899999
Q ss_pred ecceeeeeeeCC-------------CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 131 EKATMEVLFVNS-------------GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 131 ~~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|+++- ..+. ...+..+.++...+..++.-+.+.|+|||.+.+...
T Consensus 228 sNPPYI--~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 228 SNPPYI--RKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCCCcc--cccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 998762 1111 111112345667788889999999999999998654
No 164
>PLN02366 spermidine synthase
Probab=99.10 E-value=1.1e-09 Score=94.53 Aligned_cols=110 Identities=16% Similarity=0.257 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCCc--CCCCceeE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDLP--FSNDCFDV 128 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~--~~~~~fD~ 128 (259)
.+.+.+||++|||.|..+..+++... .+++.+|+++.+++.+++.+... .-++++++.+|+...- .+.+.||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35678999999999999999988743 38999999999999999987542 1246999999976531 22468999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
|++...- ++.+ ...--..++++.++++|+|||+++..
T Consensus 169 Ii~D~~d---------p~~~--~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSD---------PVGP--AQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCC---------CCCc--hhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9974321 1111 01112367899999999999999863
No 165
>PRK01581 speE spermidine synthase; Validated
Probab=99.10 E-value=3.9e-10 Score=98.20 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHH--Hh---h--cCCCCeEEEEcccCCC-cCCCCce
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LL---L--KGYKEVKVLEADMLDL-PFSNDCF 126 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~---~--~~~~~v~~~~~d~~~~-~~~~~~f 126 (259)
...+.+||++|||+|..+..+++... .+++++|+++++++.|++. +. . ..-++++++.+|+.+. ....+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34567999999999999988888653 3999999999999999962 11 1 1225689999998773 3335689
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
|+|++..+- - ..+ +...---.++++.+++.|+|||++++..
T Consensus 228 DVIIvDl~D-P--------~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPD-P--------ATE-LLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCC-c--------ccc-chhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999976321 0 000 0011123678999999999999998764
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.07 E-value=5.4e-10 Score=88.87 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcC---CCCeEEEEcccCCCc----CCCCcee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLP----FSNDCFD 127 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~----~~~~~fD 127 (259)
..++.+|||+|||+|..++.++.. +..+|+..|.++ .++.++.+++.++ -.++.+...|+.+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 346789999999999999999998 445999999999 9999999998875 234788887775511 2346899
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|++..++.. ......+++.+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y~---------------~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYD---------------EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S----------------GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccch---------------HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999777642 25667889999999999999666543
No 167
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.05 E-value=5.7e-10 Score=92.23 Aligned_cols=94 Identities=23% Similarity=0.383 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
...++||+|+|.|..+..++.... +|++.|.|+.|....+++ |+ +++.. .+....+.+||+|.|.++++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~k----g~---~vl~~--~~w~~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKK----GF---TVLDI--DDWQQTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhC----CC---eEEeh--hhhhccCCceEEEeehhhhhc
Confidence 356899999999999999987755 899999999987766654 44 33322 223223468999999999976
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
. ..+..+|+.+++.|+|+|++++.
T Consensus 164 c---------------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 164 C---------------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred c---------------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 5 67789999999999999999974
No 168
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=6.4e-09 Score=91.75 Aligned_cols=126 Identities=21% Similarity=0.338 Sum_probs=96.8
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCC---eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeE
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 128 (259)
...++.+|||+++++|.-+.++++...+ .|+++|.++..++.++++++..|+.++.+.+.|...++ ...+.||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 3468899999999999999999998653 46999999999999999999999988888888876543 22235999
Q ss_pred EEecce---eeeeeeCCCCCCCCCchhHH----HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 129 VIEKAT---MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 129 V~~~~~---l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
|++..+ ...+..++...|...+.... -..++|..+.++|||||.|++.+++.
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 995422 22334445555765544333 34679999999999999999998864
No 169
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=99.04 E-value=4.6e-09 Score=85.41 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=107.7
Q ss_pred EEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeee
Q 025039 62 VLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLF 139 (259)
Q Consensus 62 vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 139 (259)
|.|+||.-|.+.++|++.|.. +++++|+++..++.|++++...++.+ +++..+|..+.-.+.+..|+|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC-----
Confidence 689999999999999999987 89999999999999999999998765 99999997663223334899887665
Q ss_pred eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEEEEEeCCCC
Q 025039 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRS 219 (259)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (259)
+-....++|+.....++....|++.........+.++...+|....+.....++..|....+.++...
T Consensus 76 ------------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~ 143 (205)
T PF04816_consen 76 ------------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEK 143 (205)
T ss_dssp -------------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS-
T ss_pred ------------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCC
Confidence 33567788888888888777888887777777778888898988888888888888888888776555
Q ss_pred C
Q 025039 220 S 220 (259)
Q Consensus 220 ~ 220 (259)
.
T Consensus 144 ~ 144 (205)
T PF04816_consen 144 P 144 (205)
T ss_dssp -
T ss_pred C
Confidence 4
No 170
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.04 E-value=1.3e-09 Score=96.97 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~ 136 (259)
++.+|||+|||+|.+++.++..+. +|+++|+++.+++.|+++++.++++++++.++|+.+... ...+||+|+++++..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 467999999999999999998775 899999999999999999999888789999999866321 124699999876642
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
- ....+++.+. .++|++++++..
T Consensus 312 G-----------------~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 G-----------------IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C-----------------CcHHHHHHHH-hcCCCeEEEEEe
Confidence 1 1234445444 378988777653
No 171
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.03 E-value=8.2e-10 Score=100.24 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEEEec
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEK 132 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~ 132 (259)
.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++++..+++.+++++.+|+.+. .....+||+|++.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4568999999999999999998765 8999999999999999999998888899999998652 1234579999976
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++-. .....+++.+.+ ++|++.+++.
T Consensus 370 PPr~-----------------G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 370 PPRK-----------------GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred cCCC-----------------CCCHHHHHHHHh-cCCCEEEEEc
Confidence 5421 112355555544 7888866654
No 172
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.01 E-value=1.8e-09 Score=87.43 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=74.9
Q ss_pred cccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEE
Q 025039 53 QPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVI 130 (259)
Q Consensus 53 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~ 130 (259)
...+.++..|+|+.||-|.+++.+++.+.. .|+++|++|.+++.++++++.+++.+ +..+++|..++.. ...+|.|+
T Consensus 96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 96 ANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp HTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEE
T ss_pred HhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEE
Confidence 344678999999999999999999984433 89999999999999999999999876 8899999988764 67899999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
++.+-.. .++|..+.+++++||++-
T Consensus 175 m~lp~~~-------------------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPESS-------------------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp E--TSSG-------------------GGGHHHHHHHEEEEEEEE
T ss_pred ECChHHH-------------------HHHHHHHHHHhcCCcEEE
Confidence 8654322 368888999999998863
No 173
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=1.8e-09 Score=90.21 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=82.9
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-C-----CCCcee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-F-----SNDCFD 127 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-~-----~~~~fD 127 (259)
+..+|||+|+++|..+++++...+ . +++.+|.+++..+.|+++++..|+.+ |+++.+++.+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 567999999999999999987632 3 89999999999999999999998754 99999988662 2 1 125899
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+|+. ++ .......+++.+.++|+|||++++-
T Consensus 159 ~iFi----Da--------------dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFV----DA--------------DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEe----cC--------------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9994 32 3456778999999999999998873
No 174
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5.3e-10 Score=83.87 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
+|++++|+|||+|.+.....-.+...|+|+|+++++++.+.+|+....+ ++.+.+.|+.++.+..+.||.++.+++|..
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 6899999999999999777666666899999999999999999988776 578999999998777889999999988753
No 175
>PRK03612 spermidine synthase; Provisional
Probab=98.98 E-value=2.2e-09 Score=99.37 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHH--Hhhc-----CCCCeEEEEcccCCC-cCCCCcee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LLLK-----GYKEVKVLEADMLDL-PFSNDCFD 127 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~~~-----~~~~v~~~~~d~~~~-~~~~~~fD 127 (259)
+++.+|||+|||+|..+..+++... .+++++|+++++++.++++ +... .-++++++.+|..+. ....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4678999999999999999988754 4999999999999999984 2211 124688999998763 22346899
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+|+++.... +.+.+ ..--..++++.++++|+|||++++..
T Consensus 376 vIi~D~~~~---------~~~~~-~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDP---------SNPAL-GKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCC---------CCcch-hccchHHHHHHHHHhcCCCeEEEEec
Confidence 999864321 11100 00112578999999999999999854
No 176
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=4e-08 Score=77.95 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=87.0
Q ss_pred HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-C-CC
Q 025039 48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-SN 123 (259)
Q Consensus 48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~-~~ 123 (259)
+..++...--.+.++||+.+|+|.+++..+++|..+++.+|.+.+++...++|++..+.. +..++..|.... . . ..
T Consensus 33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~ 112 (187)
T COG0742 33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR 112 (187)
T ss_pred HHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC
Confidence 444555421268999999999999999999999989999999999999999999888854 478888887742 1 1 12
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHH--HHhcccCCcEEEEEecC
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEG--VHRVLKPDGLFISVSFG 179 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~ 179 (259)
+.||+|+..++++. +.-+....+.. -..+|+|+|.+++-...
T Consensus 113 ~~FDlVflDPPy~~--------------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 113 EPFDLVFLDPPYAK--------------GLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CcccEEEeCCCCcc--------------chhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 35999999888752 11222333333 45789999999986443
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.96 E-value=2.6e-09 Score=91.05 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. +++.++++|+.++++++-.+|.|+++.++
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 35678999999999999999999987 999999999999999987743 47899999998876543225888888776
Q ss_pred e
Q 025039 136 E 136 (259)
Q Consensus 136 ~ 136 (259)
.
T Consensus 116 ~ 116 (272)
T PRK00274 116 N 116 (272)
T ss_pred c
Confidence 4
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.96 E-value=5.6e-09 Score=88.39 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .+++.++++|+.+++++ .||.|+++.++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch--hceEEEEcCCc
Confidence 45678999999999999999999965 899999999999999998764 34799999999887654 48999998876
Q ss_pred e
Q 025039 136 E 136 (259)
Q Consensus 136 ~ 136 (259)
+
T Consensus 102 ~ 102 (258)
T PRK14896 102 Q 102 (258)
T ss_pred c
Confidence 4
No 179
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.95 E-value=2.8e-09 Score=90.87 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=79.5
Q ss_pred CCcEEEEcCCCCc----chHHHHhcC----CC-eEEEeeCCHHHHHHHHHHH------------------hh-----cC-
Q 025039 59 NSSVLELGCGNSR----LSEGLYNDG----IT-AITCIDLSAVAVEKMQERL------------------LL-----KG- 105 (259)
Q Consensus 59 ~~~vLDiGcG~G~----~~~~l~~~~----~~-~v~~vD~s~~~~~~a~~~~------------------~~-----~~- 105 (259)
.-+|+..||+||. +++.+.+.+ .. +|+|+|+|+.+++.|++.. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999996 445555531 12 7999999999999998742 00 00
Q ss_pred ------C-CCeEEEEcccCCCcCC-CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 106 ------Y-KEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 106 ------~-~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+ ..|+|...|+.+.+++ .+.||+|+|.+++.++ +.+...+++..+.+.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-------------~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-------------DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-------------CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1 2367888888774432 5789999999998777 5678899999999999999988753
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.93 E-value=3.8e-09 Score=95.63 Aligned_cols=102 Identities=25% Similarity=0.462 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCcchHHHHhcC-----CCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039 59 NSSVLELGCGNSRLSEGLYNDG-----ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
+..|||+|||+|.++...++++ ..+|+++|-++.++..++++++.+++. .|+++.+|+.++..+ .++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999998887775 239999999999998888877777774 499999999998755 589999974
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
.. ..+ + .-+...+.|....+.|||||+++
T Consensus 266 lL-Gsf----g--------~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LL-GSF----G--------DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTT----B--------TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cc-CCc----c--------ccccCHHHHHHHHhhcCCCCEEe
Confidence 21 111 1 11345578888999999999987
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=5.2e-09 Score=96.50 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=89.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecce
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT 134 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 134 (259)
.+..+||||||.|..+..+|...+. .++|+|+....+..+.++....++.|+.+++.|+..+. ++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i--- 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI--- 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE---
Confidence 3568999999999999999999887 99999999999999999888888888888887764322 45566666664
Q ss_pred eeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEec
Q 025039 135 MEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.+.+||-+..+... ....+++.+.++|+|||.+.+.+-
T Consensus 424 ------~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 424 ------LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred ------ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 34678865433333 346899999999999999998764
No 182
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.92 E-value=3.4e-09 Score=86.98 Aligned_cols=101 Identities=20% Similarity=0.415 Sum_probs=76.0
Q ss_pred cchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC
Q 025039 44 DYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN 123 (259)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 123 (259)
+...+.+.+.. .+....|.|+|||.+.++. .-...|..+|+.+ .+-+++..|+.+.|+++
T Consensus 167 Pld~ii~~ik~-r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 167 PLDVIIRKIKR-RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------VNERVIACDMRNVPLED 226 (325)
T ss_pred hHHHHHHHHHh-CcCceEEEecccchhhhhh----ccccceeeeeeec---------------CCCceeeccccCCcCcc
Confidence 34455555553 3456789999999998875 2223899999864 24577888999999999
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
++.|++++--++ .-.++..++.++.|+|+|||.+++.+...
T Consensus 227 ~svDvaV~CLSL----------------Mgtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 227 ESVDVAVFCLSL----------------MGTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred CcccEEEeeHhh----------------hcccHHHHHHHHHHHhccCceEEEEehhh
Confidence 999998753322 22578899999999999999999987643
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.92 E-value=8e-09 Score=89.40 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc-CCCC-eEEEE-cccCCC----cCCCCceeEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-GYKE-VKVLE-ADMLDL----PFSNDCFDVV 129 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~-~d~~~~----~~~~~~fD~V 129 (259)
++.++||||||+|.+...++...+. +++|+|+++.+++.|+++++.+ ++.+ +.+.. .+...+ ..+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4578999999999888777766444 9999999999999999999988 6754 76653 232221 1235689999
Q ss_pred Eecceeeee
Q 025039 130 IEKATMEVL 138 (259)
Q Consensus 130 ~~~~~l~~~ 138 (259)
+|+++|+.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999998643
No 184
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.92 E-value=1.6e-08 Score=84.73 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCC---CeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCCCc---CCCCceeEEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGI---TAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP---FSNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~---~~~~~fD~V~ 130 (259)
.+-+||||+||.|+.........+ .++...|+|+..++..++.++.+|+.++ +|.++|+++.. .-.-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 567999999999999887777644 3899999999999999999999999885 99999998732 1233579999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.++.++.+ .+-....+.+..+..++.|||+++...
T Consensus 215 VsGL~ElF------------~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELF------------PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhC------------CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 99988766 233456778999999999999999864
No 185
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.91 E-value=9.8e-09 Score=82.09 Aligned_cols=102 Identities=23% Similarity=0.302 Sum_probs=83.1
Q ss_pred cCCCCC-cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNS-SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~-~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.++... +++|+|+|.|--++.++-..+. +++.+|.+.+-+...+......++++++++++.+.+ ......||+|++.
T Consensus 44 ~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR 122 (184)
T PF02527_consen 44 FLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR 122 (184)
T ss_dssp CS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE
T ss_pred hhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee
Confidence 344333 8999999999999999888877 899999999999999999999999999999998877 3345789999987
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.+- ....++.-+...+++||.+++.
T Consensus 123 Av~-------------------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 123 AVA-------------------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SSS-------------------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhc-------------------CHHHHHHHHHHhcCCCCEEEEE
Confidence 653 4457888999999999999976
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=8.6e-09 Score=88.57 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=67.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
+.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ .++++++++|+.+..+ ..||+|+++.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP 110 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP 110 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC
Confidence 45778999999999999999999876 89999999999999999987655 3569999999987654 36899999877
Q ss_pred eee
Q 025039 135 MEV 137 (259)
Q Consensus 135 l~~ 137 (259)
++.
T Consensus 111 Y~I 113 (294)
T PTZ00338 111 YQI 113 (294)
T ss_pred ccc
Confidence 753
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.89 E-value=9.2e-09 Score=87.39 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
.++.|||+|||+|.++.+.+.+|..+|+++|-| +|.+.|++.++.+++.+ |.++.+.+.++.++ ++.|+|++-++-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 578899999999999999999999899999965 68999999888887755 99999999887765 6899999865432
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
.++ +.+.++.++ .+++.|+|+|.++
T Consensus 255 mL~------------NERMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLV------------NERMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhh------------hHHHHHHHH-HHHhhcCCCCccc
Confidence 221 223444444 3569999999987
No 188
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.87 E-value=2.8e-08 Score=83.79 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCc----chHHHHhcC-----CC-eEEEeeCCHHHHHHHHHHHhh-----cC-----------------
Q 025039 58 PNSSVLELGCGNSR----LSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLL-----KG----------------- 105 (259)
Q Consensus 58 ~~~~vLDiGcG~G~----~~~~l~~~~-----~~-~v~~vD~s~~~~~~a~~~~~~-----~~----------------- 105 (259)
..-+|+-.||++|. +++.+.+.+ .. +|+|+|+|..+++.|++-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36789999999996 555555554 23 899999999999999762200 00
Q ss_pred ------C-CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 106 ------Y-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 106 ------~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+ ..|.|...|+.+-++..+.||+|+|.+++-++ +.+...+++..++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-------------d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-------------DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-------------CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1 23666677776644234679999999999887 6688899999999999999999973
No 189
>PLN02823 spermine synthase
Probab=98.87 E-value=1.4e-08 Score=88.57 Aligned_cols=111 Identities=18% Similarity=0.296 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCC-cCCCCceeEEE
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVI 130 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~V~ 130 (259)
+.+.+||.+|+|.|..+..+++.. ..+++.+|+++++++.+++.+.... -++++++.+|.... ....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 356799999999999999888864 3489999999999999999875431 25689999998763 33356899999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHH-HHHhcccCCcEEEEE
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISV 176 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~ 176 (259)
+... + ++...+...---.++++ .+.+.|+|||++++-
T Consensus 182 ~D~~-d--------p~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-D--------PVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-C--------ccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 6521 1 11000000001246787 889999999998864
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.87 E-value=3.6e-08 Score=83.19 Aligned_cols=76 Identities=26% Similarity=0.432 Sum_probs=63.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCcee---EEEec
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD---VVIEK 132 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD---~V~~~ 132 (259)
..++.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++.. .++++++++|+.+.+++ .+| +|+++
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 34678999999999999999999987 799999999999999988753 34789999999887654 466 77877
Q ss_pred ceee
Q 025039 133 ATME 136 (259)
Q Consensus 133 ~~l~ 136 (259)
.+++
T Consensus 102 lPy~ 105 (253)
T TIGR00755 102 LPYN 105 (253)
T ss_pred CChh
Confidence 6653
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.85 E-value=9.3e-09 Score=91.45 Aligned_cols=99 Identities=25% Similarity=0.279 Sum_probs=79.7
Q ss_pred CCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 59 NSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
+.+|||++||+|..++.++.. +..+|+++|+++.+++.++++++.++++++.+.++|+..+......||+|++.+.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999765 4348999999999999999999999887788889998663211357999997542
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.....+++.+.+.+++||++++.
T Consensus 135 ----------------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----------------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----------------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12246788878889999999986
No 192
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=3.1e-08 Score=85.90 Aligned_cols=109 Identities=20% Similarity=0.231 Sum_probs=93.6
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
...+|.+|||+-||-|.+++.++..|..+|+++|++|.+++.++++++.+++.+ +..+++|........+.+|-|+++.
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 345699999999999999999999988679999999999999999999999987 8899999998764447899999865
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
+- ...+++..+.+.+++||.+-+.++.+..
T Consensus 265 p~-------------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 265 PK-------------------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CC-------------------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 43 3347888999999999999998876544
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.7e-08 Score=80.53 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=84.6
Q ss_pred HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhc-CCC--eEEEeeCCHHHHHHHHHHHhhcC----------CCCeEEEE
Q 025039 47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYND-GIT--AITCIDLSAVAVEKMQERLLLKG----------YKEVKVLE 113 (259)
Q Consensus 47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~--~v~~vD~s~~~~~~a~~~~~~~~----------~~~v~~~~ 113 (259)
.....|..++.|+.++||+|+|+|.++..++.. +.. ...|+|.-++.++.+++++...- .....+..
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 345566677889999999999999999988865 332 45999999999999999875442 23467788
Q ss_pred cccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 114 ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 114 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+|......+..+||.|.+.... .++.+++...|+|||.+++-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa---------------------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA---------------------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccCc---------------------cccHHHHHHhhccCCeEEEe
Confidence 9988876667899999986432 24567777889999999984
No 194
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.81 E-value=1.5e-08 Score=89.40 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 118 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 118 (259)
+.+|||++||+|.+++.+++... +|+++|+++.+++.+++++..+++.+++++.+|+.+
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 35799999999999998887765 999999999999999999999998889999999866
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.80 E-value=1.8e-08 Score=89.27 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-c-CC--------------
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P-FS-------------- 122 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~-~~-------------- 122 (259)
+.+|||++||+|.+++.+++... +|+++|+++.+++.+++++..+++++++++++|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~-~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFR-RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 35799999999999998887755 9999999999999999999999988899999998662 1 10
Q ss_pred CCceeEEEecce
Q 025039 123 NDCFDVVIEKAT 134 (259)
Q Consensus 123 ~~~fD~V~~~~~ 134 (259)
...||+|+..++
T Consensus 286 ~~~~D~v~lDPP 297 (362)
T PRK05031 286 SYNFSTIFVDPP 297 (362)
T ss_pred CCCCCEEEECCC
Confidence 125899997655
No 196
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.79 E-value=1.1e-07 Score=82.44 Aligned_cols=138 Identities=18% Similarity=0.196 Sum_probs=93.2
Q ss_pred ccchhhhcCCCCcccccccchH---HHHhhcccCCCCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHH
Q 025039 26 PHYWDERFSDEEHYEWLKDYSH---FRHLVQPHIKPNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKM 97 (259)
Q Consensus 26 ~~~w~~~~~~~~~~~w~~~~~~---~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a 97 (259)
.+.|+++...+..+-...+..- ....+...+.++..++|+|||+|.-+..|.+. +.. .++++|+|..+++.+
T Consensus 41 s~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a 120 (319)
T TIGR03439 41 LKLFEEITYSPEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRT 120 (319)
T ss_pred HHHHHHHHcCCccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 5567777665444332222221 22344455677889999999999977665553 222 799999999999999
Q ss_pred HHHHhhcCCCCeEE--EEcccCCC----cC--CCCceeEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHh-cc
Q 025039 98 QERLLLKGYKEVKV--LEADMLDL----PF--SNDCFDVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR-VL 167 (259)
Q Consensus 98 ~~~~~~~~~~~v~~--~~~d~~~~----~~--~~~~fD~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~L 167 (259)
.+++....++.+.+ +++|..+. +. ......+++.. .++..+ .......+|+++++ .|
T Consensus 121 ~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf-------------~~~ea~~fL~~~~~~~l 187 (319)
T TIGR03439 121 LAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF-------------SRPEAAAFLAGFLATAL 187 (319)
T ss_pred HHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCC-------------CHHHHHHHHHHHHHhhC
Confidence 99988555666554 78887652 21 12235666654 355444 55788899999999 99
Q ss_pred cCCcEEEEE
Q 025039 168 KPDGLFISV 176 (259)
Q Consensus 168 kpgG~l~~~ 176 (259)
+|||.|++-
T Consensus 188 ~~~d~lLiG 196 (319)
T TIGR03439 188 SPSDSFLIG 196 (319)
T ss_pred CCCCEEEEe
Confidence 999999883
No 197
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.77 E-value=1.7e-08 Score=83.34 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=59.9
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHH-HHHHHhhcCCCCe-EEEEcccCCCc-----CCCCceeEEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEK-MQERLLLKGYKEV-KVLEADMLDLP-----FSNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~~~~v-~~~~~d~~~~~-----~~~~~fD~V~ 130 (259)
++.+|||+|||+|.++..+++.|..+|+++|+++.++.. .+++ +++ .+...|+..+. ..-..+|+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 677999999999999999999987699999999987765 3332 122 22333443222 1112456555
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++. ..++..+.++|+| |.+++.
T Consensus 149 iS~-----------------------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 149 ISL-----------------------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred eeh-----------------------HhHHHHHHHHhCc-CeEEEE
Confidence 321 2368889999999 776654
No 198
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=1.4e-07 Score=71.04 Aligned_cols=95 Identities=16% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCceeEEEeccee
Q 025039 58 PNSSVLELGCGNSR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 135 (259)
++.+|||+|||+|. .+..|++.|. +|+++|+++.+++.++++ .+.+...|+++.... -..+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysir-- 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIR-- 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence 45789999999996 8889998888 999999999999988775 368889999885432 24699999743
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
...+++..+-++++.+ |.-+++..++.
T Consensus 86 ----------------pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 86 ----------------PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred ----------------CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 2355555655666544 45566655544
No 199
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.76 E-value=1.3e-08 Score=82.50 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=84.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCC--cCCCCceeEEEe
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL--PFSNDCFDVVIE 131 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~--~~~~~~fD~V~~ 131 (259)
.+++.+|||.|.|-|..++..+++|...|+.+|.++..++.|.-|--..++- .+.++.+|..+. .+++++||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3568999999999999999999999889999999999999987664333322 368889998774 378899999996
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.++=-.+ .+.-=..++..+++++|+|||.++-..-
T Consensus 212 DPPRfS~------------AgeLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 212 DPPRFSL------------AGELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred CCCccch------------hhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 5431111 1111235789999999999999997643
No 200
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.4e-08 Score=84.83 Aligned_cols=131 Identities=23% Similarity=0.329 Sum_probs=99.9
Q ss_pred ccchhhhcCCCC---cccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHH
Q 025039 26 PHYWDERFSDEE---HYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERL 101 (259)
Q Consensus 26 ~~~w~~~~~~~~---~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~ 101 (259)
++|...+|..-. ....+..|+....++.. .+.+..++|+|||.|..+.. .+. .++|.|++...+..+++.
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~-~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~- 84 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDS-QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS- 84 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHHHHhc-cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC-
Confidence 456666664421 11234557777787774 44588999999999976642 133 689999999988888764
Q ss_pred hhcCCCCe-EEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 102 LLKGYKEV-KVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 102 ~~~~~~~v-~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+. .....|+..+|+...+||.+++..++||+ .......+++++..+.++|||..++..++.
T Consensus 85 ------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhl------------sT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 85 ------GGDNVCRADALKLPFREESFDAALSIAVIHHL------------STRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ------CCceeehhhhhcCCCCCCccccchhhhhhhhh------------hhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 33 56778999999999999999999999998 356778899999999999999999876653
No 201
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.71 E-value=2e-07 Score=81.49 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=89.7
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC----------------------------------------eEEEeeCCHHHHHH
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT----------------------------------------AITCIDLSAVAVEK 96 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------------------------~v~~vD~s~~~~~~ 96 (259)
.++..++|.-||+|.+++..+..+.+ .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 45678999999999999999887641 27799999999999
Q ss_pred HHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHH-HHHHHHHHHHhcccCCcEEE
Q 025039 97 MQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVT-KVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 97 a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~ 174 (259)
|+.|+...|+.+ |.|.++|+..+..+-+.+|+|+||+++..-+.+ +.... ....+.+.+++.++--+.++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~--------~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGS--------EALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCC--------hhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 999999999876 999999999887443789999999988533211 01223 34566677778888888888
Q ss_pred EEecC
Q 025039 175 SVSFG 179 (259)
Q Consensus 175 ~~~~~ 179 (259)
+++..
T Consensus 342 ~tt~e 346 (381)
T COG0116 342 FTTSE 346 (381)
T ss_pred EEccH
Confidence 87643
No 202
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=1.8e-08 Score=81.44 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
+....++|+|||-|....++...+..+++-+|.|-.|++.++.. ...++ .+....+|-..+++.++++|+|+++..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence 34568999999999999999999887999999999999998764 22222 24455677777889999999999988887
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.. .+++..+.+++..|||+|.++...+
T Consensus 149 W~---------------NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 149 WT---------------NDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hh---------------ccCchHHHHHHHhcCCCccchhHHh
Confidence 55 5667788899999999999997544
No 203
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.66 E-value=3.8e-08 Score=84.30 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=89.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEe
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIE 131 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~ 131 (259)
..++..|||+++++|.-+.++++... ..+++.|+++..+...++++...|+.++.+...|..... .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45788999999999999999988754 299999999999999999999999988888888876642 22346999995
Q ss_pred cce---eeeeeeCCCCCCCCCchhH----HHHHHHHHHHHhcc----cCCcEEEEEecC
Q 025039 132 KAT---MEVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVL----KPDGLFISVSFG 179 (259)
Q Consensus 132 ~~~---l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L----kpgG~l~~~~~~ 179 (259)
..+ ...+-.++...|...++.. ....++|+.+.+.+ ||||++++.+++
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 322 1111112222232222222 23457899999999 999999999875
No 204
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=3.2e-07 Score=74.47 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=84.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCceeE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFDV 128 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD~ 128 (259)
.++++||+|.=||..++.++..-+. +|+++|+++...+.+.+..+..++.. |+++++...+. . .+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5789999999999999999888655 99999999999999999988888866 99999887651 1 24578999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++ +++. ..+.....+++.+++|+||++++-
T Consensus 153 aF----vDad--------------K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AF----VDAD--------------KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EE----Eccc--------------hHHHHHHHHHHHhhcccccEEEEe
Confidence 99 4443 355668999999999999999984
No 205
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.65 E-value=1.1e-07 Score=84.31 Aligned_cols=98 Identities=12% Similarity=0.226 Sum_probs=81.0
Q ss_pred CcEEEEcCCCCcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEecceee
Q 025039 60 SSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATME 136 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 136 (259)
.+|||+.||+|..++.++.. |..+|+++|+++.+++.+++|++.++..++.+.++|+..+- .....||+|...+ +.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999987 45599999999999999999999988777889999887642 1235799998644 31
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
....+++.+.+.+++||.+++.
T Consensus 125 ------------------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ------------------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ------------------CcHHHHHHHHHhcccCCEEEEE
Confidence 2236899999999999999986
No 206
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.65 E-value=4.5e-08 Score=76.34 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=55.4
Q ss_pred cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCc--CCCCc-eeEEEeccee
Q 025039 61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP--FSNDC-FDVVIEKATM 135 (259)
Q Consensus 61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~~~~-fD~V~~~~~l 135 (259)
.|+|+.||.|..++.+++.+. +|+++|+++..++.|+.++...|+. ++.++++|+.++. ..... +|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 699999999999999999976 8999999999999999999999975 5999999998743 22222 8999987665
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=5.9e-07 Score=74.50 Aligned_cols=125 Identities=23% Similarity=0.385 Sum_probs=90.6
Q ss_pred ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhh
Q 025039 26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLL 103 (259)
Q Consensus 26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~ 103 (259)
.|-|.........+-|-.....+...+. +.||.+|||-|.|+|.++.++++. ++. +++.+|+.+...+.|++-++.
T Consensus 75 pELWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~ 152 (314)
T KOG2915|consen 75 PELWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE 152 (314)
T ss_pred hHHhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence 5556665555444444444445555544 679999999999999999999987 444 899999999999999999999
Q ss_pred cCCCC-eEEEEcccCCCcC--CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039 104 KGYKE-VKVLEADMLDLPF--SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172 (259)
Q Consensus 104 ~~~~~-v~~~~~d~~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 172 (259)
.++++ +++.+.|+....+ +...+|.|+. |...|| .++--+.++||.+|.
T Consensus 153 hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL---------DlPaPw-----------~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 153 HGIGDNVTVTHRDVCGSGFLIKSLKADAVFL---------DLPAPW-----------EAIPHAAKILKDEGG 204 (314)
T ss_pred hCCCcceEEEEeecccCCccccccccceEEE---------cCCChh-----------hhhhhhHHHhhhcCc
Confidence 99865 8999999877443 2355676663 334555 345556667887774
No 208
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.62 E-value=1.7e-07 Score=77.63 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=68.7
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
..++++..|||+|.|||.++..+.+.|. +|+++|+++.|+....++.......+ .+++.+|+.+.+++ .||.++++
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 4567899999999999999999999998 99999999999999999987554434 88999999887654 69999987
Q ss_pred ceee
Q 025039 133 ATME 136 (259)
Q Consensus 133 ~~l~ 136 (259)
-++.
T Consensus 131 lPyq 134 (315)
T KOG0820|consen 131 LPYQ 134 (315)
T ss_pred CCcc
Confidence 6654
No 209
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.62 E-value=7.2e-07 Score=72.05 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=115.9
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEe
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIE 131 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~ 131 (259)
.+++.+.++.|+||--|++..++.+.+.. .+++.|+++..++.|.+++...+... +++..+|....-..+..+|+|+.
T Consensus 12 ~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 12 NLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred HHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence 34556677999999999999999999887 99999999999999999999888754 88888888653234457999987
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEE
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY 211 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (259)
.++ +-....++|++-...|+.--.+++..-.++...+.++....|....+....++++.|...
T Consensus 92 AGM-----------------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIl 154 (226)
T COG2384 92 AGM-----------------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILEEDGKIYEIL 154 (226)
T ss_pred eCC-----------------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeecccCeEEEEE
Confidence 664 224667888888888875556776555555556667777778777788888888999988
Q ss_pred EEEeCCC
Q 025039 212 ILRKGKR 218 (259)
Q Consensus 212 ~~~~~~~ 218 (259)
++.++..
T Consensus 155 v~e~~~~ 161 (226)
T COG2384 155 VVEKSSK 161 (226)
T ss_pred EEecCCc
Confidence 8887753
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=2.7e-07 Score=75.16 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=82.4
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCc-eeEEEecceee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC-FDVVIEKATME 136 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~V~~~~~l~ 136 (259)
+.+++|+|+|.|.=++.++-..+. +++.+|...+.+...+.-....+++|++++++.+.++... .. ||+|++.++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehc--
Confidence 689999999999999988866565 8999999999999999999999998999999988886522 23 999998654
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
..+..+++-...++++||.+++.
T Consensus 145 -----------------a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 145 -----------------ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred -----------------cchHHHHHHHHHhcccCCcchhh
Confidence 35567888899999999988653
No 211
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=7.7e-07 Score=74.45 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCC-ceeEEEecce
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND-CFDVVIEKAT 134 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~V~~~~~ 134 (259)
+.++..|||||+|.|.++..|++.+. +|+++|+++.+++..++++.. ..+++++.+|+.+..++.- .++.|+++-+
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLAQPYKVVANLP 104 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhcCCCEEEEcCC
Confidence 45678999999999999999999998 899999999999999998762 3479999999998876532 6889999877
Q ss_pred eee
Q 025039 135 MEV 137 (259)
Q Consensus 135 l~~ 137 (259)
++.
T Consensus 105 Y~I 107 (259)
T COG0030 105 YNI 107 (259)
T ss_pred Ccc
Confidence 653
No 212
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.61 E-value=1.7e-07 Score=79.75 Aligned_cols=106 Identities=23% Similarity=0.338 Sum_probs=80.8
Q ss_pred CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCCc-CCCCceeEEEecc
Q 025039 60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLP-FSNDCFDVVIEKA 133 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 133 (259)
++||-+|.|.|..+..+.+...- +++.+|+++..++.+++.+.... -+++.++..|..+.- ....+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999998744 99999999999999999876654 356888888887742 1223799999643
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.=. . .|...---.++++.+.++|+++|+++.-
T Consensus 158 tdp-~----------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V----------GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C----------CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 210 0 0000011268999999999999999987
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.59 E-value=3.1e-07 Score=88.14 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=82.7
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcC-------------------------------------------CCeEEEeeCCHHH
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDG-------------------------------------------ITAITCIDLSAVA 93 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~-------------------------------------------~~~v~~vD~s~~~ 93 (259)
.++..++|.+||+|.+++..+..+ ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 457899999999999999886531 0158999999999
Q ss_pred HHHHHHHHhhcCCCC-eEEEEcccCCCcCC--CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH---hcc
Q 025039 94 VEKMQERLLLKGYKE-VKVLEADMLDLPFS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH---RVL 167 (259)
Q Consensus 94 ~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~L 167 (259)
++.|++|+...|+.+ +.+.++|+.+++.+ .++||+|++++++..-.. ...+..++...+. +..
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~-----------~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLG-----------EEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccC-----------chHHHHHHHHHHHHHHHHh
Confidence 999999999999865 88999999887533 357999999988753311 1233334433333 333
Q ss_pred cCCcEEEEEecCC
Q 025039 168 KPDGLFISVSFGQ 180 (259)
Q Consensus 168 kpgG~l~~~~~~~ 180 (259)
.+|+.+++++...
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4899988876543
No 214
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.56 E-value=3.4e-07 Score=79.56 Aligned_cols=133 Identities=22% Similarity=0.314 Sum_probs=82.7
Q ss_pred hHHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhc--------CCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEE
Q 025039 46 SHFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYND--------GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLE 113 (259)
Q Consensus 46 ~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~ 113 (259)
..+..++...+ .++.+|+|.+||+|.++..+.+. ...+++|+|+++.++..|+-++...+... ..+..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 44555544333 35568999999999999888763 22289999999999999998876665433 45788
Q ss_pred cccCCCcCC--CCceeEEEecceeeee-eeC----CCCCCCCC-chhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 114 ADMLDLPFS--NDCFDVVIEKATMEVL-FVN----SGDPWNPQ-PETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 114 ~d~~~~~~~--~~~fD~V~~~~~l~~~-~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|....+.. ...||+|++++++... +.. ....|... +.....-..++..+.+.|++||++.++.+
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 887654422 4689999999988654 111 11112210 11112223488999999999999887654
No 215
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.4e-07 Score=83.49 Aligned_cols=75 Identities=24% Similarity=0.289 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC---CCceeEEEecc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKA 133 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~ 133 (259)
++.++||+=||.|.+++.+++... +|+|+|+++.+++.|+++++.+++.|+++..++..++... ...+|+|+..+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 567999999999999999997766 9999999999999999999999999999999998875422 34789999654
No 216
>PRK00536 speE spermidine synthase; Provisional
Probab=98.53 E-value=1e-06 Score=74.27 Aligned_cols=96 Identities=21% Similarity=0.295 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
+.+++||-+|.|.|..+..+++... +|+.+|+++++++.+++.+... .-++++++.. +.+ ...++||+|++.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 4678999999999999999998854 9999999999999999954332 2234665541 111 123689999975
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
..+ ..++.+.+++.|+|||+++.-
T Consensus 147 s~~--------------------~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 147 QEP--------------------DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCC--------------------ChHHHHHHHHhcCCCcEEEEC
Confidence 322 146788999999999999984
No 217
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.52 E-value=5.3e-07 Score=75.98 Aligned_cols=104 Identities=22% Similarity=0.301 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh----c------------------------CCC---
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL----K------------------------GYK--- 107 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~------------------------~~~--- 107 (259)
+.+||..|||.|+++..++..|+ .+.|.|+|--|+-...-.+.. . .+|
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 57899999999999999999999 899999999886554332211 0 011
Q ss_pred ---------CeEEEEcccCCCcCCC---CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 108 ---------EVKVLEADMLDLPFSN---DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 108 ---------~v~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
++....+|+.+...+. ++||+|+...-+| ...++.++++.+.++|||||+.+=
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID---------------TA~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID---------------TAENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee---------------chHHHHHHHHHHHHHhccCCEEEe
Confidence 2444556665543233 6899988754443 458899999999999999997775
Q ss_pred Eec
Q 025039 176 VSF 178 (259)
Q Consensus 176 ~~~ 178 (259)
..+
T Consensus 201 ~GP 203 (270)
T PF07942_consen 201 FGP 203 (270)
T ss_pred cCC
Confidence 443
No 218
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.51 E-value=2.4e-07 Score=77.76 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCCc-CCCC-ceeE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLP-FSND-CFDV 128 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~-~~~~-~fD~ 128 (259)
.+.+.+||-+|.|.|..+..+.+... .+++.+|+++.+++.|++.+.... -++++++.+|....- -..+ +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 34688999999999999999988753 399999999999999999765432 246899999987632 2234 8999
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
|+....- +..+.+ .--..++++.+++.|+|||++++-.
T Consensus 154 Ii~D~~d---------p~~~~~--~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTD---------PDGPAP--NLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSS---------TTSCGG--GGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCC---------CCCCcc--cccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9963221 010100 0112689999999999999999864
No 219
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=6.9e-07 Score=70.73 Aligned_cols=108 Identities=15% Similarity=0.236 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
-.+++|||+|+|+|..++..+..|...|+..|+.+..+...+-|.+.+++ .+.+...|... .+..||+|+...++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC---CCcceeEEEeeceec
Confidence 36899999999999999999999988999999999999999999988885 67887777655 356799999876553
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
+.....+++....++...|-.+++-+++++..
T Consensus 154 ---------------~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 154 ---------------NHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred ---------------CchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 22455667774445555555555555555443
No 220
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.49 E-value=5.4e-07 Score=79.59 Aligned_cols=58 Identities=28% Similarity=0.414 Sum_probs=47.9
Q ss_pred CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039 60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 118 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 118 (259)
..|||+-||.|.+++.+++... +|+|+|+++.+++.|+++++.+++.++++..++..+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 4799999999999999998877 999999999999999999999999999999876543
No 221
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.46 E-value=1e-06 Score=82.09 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=58.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcC--------C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCC
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDG--------I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~--------~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 123 (259)
.+.+|||.|||+|.++..+++.. . ..++|+|+++.++..++.++...+...+.+.+.|.... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34689999999999998887643 1 27899999999999999988766522345555554321 1112
Q ss_pred CceeEEEecceeeee
Q 025039 124 DCFDVVIEKATMEVL 138 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~ 138 (259)
+.||+|++++++...
T Consensus 111 ~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 111 DLFDIVITNPPYGRL 125 (524)
T ss_pred CcccEEEeCCCcccc
Confidence 579999999988643
No 222
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.44 E-value=1e-06 Score=75.13 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.+.+|||+|||+|..+..+.+... .+++++|.|+.|++.++..+....-........+...-..+....|+|+++.+|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 457999999999987665555422 289999999999999988765432111110111111101112234999999888
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
..+ .+ ....++++.+.+.+.+ .|++++++.+
T Consensus 113 ~EL------------~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 113 NEL------------PS-AARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hcC------------Cc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 766 23 6677888888888776 8888887654
No 223
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.43 E-value=9.9e-08 Score=85.59 Aligned_cols=99 Identities=27% Similarity=0.444 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCcchHHHHhcCCCeEEEe---eCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGITAITCI---DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
..+||+|||+|.++.+|.+++.. +..+ |..+..++.|.++ |++.+-. ...-..+|++++.||+|-|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleR----Gvpa~~~-~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALER----GVPAMIG-VLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhc----Ccchhhh-hhccccccCCccchhhhhcccccc
Confidence 56999999999999999999763 3222 4445556666554 5443211 112346899999999999988764
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
. |.+ .-.-+|-++-|+|+|||++++...
T Consensus 193 ~--------W~~------~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 193 P--------WHP------NDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred c--------chh------cccceeehhhhhhccCceEEecCC
Confidence 3 321 113588999999999999998654
No 224
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.43 E-value=1.7e-06 Score=74.62 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=84.6
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 138 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 138 (259)
-...+|+|.|.|+.+..+....+ ++-+++++...+..+...+. . .|..+.+|+++- .| .-|+|++..++|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TP--KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CC--CcCeEEEEeecccC
Confidence 47899999999999999999555 89999999888777777654 2 467778888764 33 34799999999998
Q ss_pred eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
++++..++|+++++.|+|||.+++++.-.+
T Consensus 250 -------------tDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 250 -------------TDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred -------------ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 789999999999999999999999886433
No 225
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.41 E-value=2.2e-06 Score=75.17 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=88.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVI 130 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~ 130 (259)
.+++.+|||+++.+|.-+.+++..-.+ .|++.|.+...+...+.++...|+.+..+...|..+++ ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 357899999999999988888775222 79999999999999999999999988777888887654 443 899998
Q ss_pred ecceeee---eeeCCCCCCCCCc----hhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 131 EKATMEV---LFVNSGDPWNPQP----ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 131 ~~~~l~~---~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
...+=.- ...+....|.... +...-.+++|..+.+++++||+|+..+++-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 4322111 1111111122111 112234678999999999999999988864
No 226
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.41 E-value=4.3e-07 Score=79.94 Aligned_cols=112 Identities=23% Similarity=0.274 Sum_probs=92.8
Q ss_pred hcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEE
Q 025039 52 VQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVI 130 (259)
Q Consensus 52 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~ 130 (259)
+...+.++..++|+|||-|.....++......++|++.++..+.++........+++ ..++..|+.+.++++..||.+.
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 344556777999999999999999988876699999999998888888776666655 4557788888899999999999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+..+..|. ++...+++++.++++|||+++..++
T Consensus 184 ~ld~~~~~---------------~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 184 FLEVVCHA---------------PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEeecccC---------------CcHHHHHHHHhcccCCCceEEeHHH
Confidence 86655444 6778999999999999999998665
No 227
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.39 E-value=3.1e-07 Score=73.89 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=63.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc----CCCCceeEEEec
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP----FSNDCFDVVIEK 132 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~----~~~~~fD~V~~~ 132 (259)
....|+|..||.|..++..+..++ .|+++|+++.-+..|+++++..|+++ |+|+++|+.++. +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999999999999998 89999999999999999999999987 999999998742 333346677755
Q ss_pred ce
Q 025039 133 AT 134 (259)
Q Consensus 133 ~~ 134 (259)
++
T Consensus 173 pp 174 (263)
T KOG2730|consen 173 PP 174 (263)
T ss_pred CC
Confidence 43
No 228
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.38 E-value=4.2e-07 Score=71.42 Aligned_cols=99 Identities=22% Similarity=0.296 Sum_probs=79.7
Q ss_pred CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 139 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 139 (259)
..+.|+|+|+|.++...+.... +|++++.+|.....|.+++...|..++.++.+|+.+..+ +..|+|+|-. ++...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~-rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE-RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc-eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhHHh
Confidence 6899999999999998887744 999999999999999999988888889999999998877 4689999854 33221
Q ss_pred eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
. .+....++..+...|+-.+.++
T Consensus 110 i------------~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 I------------EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred h------------cccccHHHHHHHHHhhcCCccc
Confidence 1 1334456777777888888877
No 229
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.36 E-value=4.4e-07 Score=72.60 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhcC--CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC------c--CC--CCc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL------P--FS--NDC 125 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~------~--~~--~~~ 125 (259)
++.+|||+||++|..+..+.+.+ ..+|+|+|+.+. ...+++..+.+|+.+. . +. ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 34899999999999999999998 239999999875 1123455556665431 1 11 258
Q ss_pred eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
+|+|+|.+..... +.+-..+....+.....+.-+.+.|+|||.+++-.+.....
T Consensus 92 ~dlv~~D~~~~~~----g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 92 FDLVLSDMAPNVS----GDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp ESEEEE-----------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred cceeccccccCCC----CchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 9999998744322 10000001223344456666678899999999877765443
No 230
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.33 E-value=1.2e-06 Score=75.12 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=61.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCC--CceeEEE
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSN--DCFDVVI 130 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~--~~fD~V~ 130 (259)
.++..++|.+||.|..+..+++... . +|+|+|.++.+++.+++++.. ..++.++++|+.++. .+. .++|.|+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 4678999999999999999999864 3 999999999999999998865 357999999988753 222 2799998
Q ss_pred ec
Q 025039 131 EK 132 (259)
Q Consensus 131 ~~ 132 (259)
+.
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 65
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.30 E-value=1.5e-05 Score=64.80 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=81.6
Q ss_pred cccccchHHHHhhcc-----cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEE
Q 025039 40 EWLKDYSHFRHLVQP-----HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVL 112 (259)
Q Consensus 40 ~w~~~~~~~~~~l~~-----~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~ 112 (259)
.|-...+.+...+.. .+.++.+||-+|+.+|....+++.. +.. .|+++|+|+...+..-.-++.+ +|+-.+
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPI 127 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPI 127 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEE
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--Cceeee
Confidence 466666677766643 3468999999999999999999887 434 8999999997766655544443 478878
Q ss_pred EcccCCCc---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 113 EADMLDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 113 ~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.+|+.... .--+.+|+|++.-. ...+.+-++.++...||+||.+++.-
T Consensus 128 l~DAr~P~~Y~~lv~~VDvI~~DVa-----------------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 128 LEDARHPEKYRMLVEMVDVIFQDVA-----------------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp ES-TTSGGGGTTTS--EEEEEEE-S-----------------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccCCChHHhhcccccccEEEecCC-----------------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 88987632 12357999986321 22566778888999999999999863
No 232
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.29 E-value=4.8e-06 Score=69.86 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC---------------------------C-CC
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---------------------------Y-KE 108 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------------------------~-~~ 108 (259)
.++.++||+|||+-.....-+.....+++..|+.+..++..++-++..+ . ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 3567899999999655444444445589999999998887766443221 0 11
Q ss_pred e-EEEEcccCCCc-CCC-----CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 109 V-KVLEADMLDLP-FSN-----DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 109 v-~~~~~d~~~~~-~~~-----~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
| .++..|+.+.+ +.. .+||+|++..+++... .+.+....+++++.++|||||.|++...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~-----------~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC-----------KDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH------------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc-----------CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3 35667887643 221 2599999998887763 2557889999999999999999998753
No 233
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=8.2e-06 Score=65.81 Aligned_cols=114 Identities=23% Similarity=0.263 Sum_probs=77.8
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCC
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSN 123 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~ 123 (259)
..+.++..|+|+||.+|..+..+++.... .|+++|+.|- + ..+++.++++|+..-. +..
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~--~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K--PIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c--cCCCceEEeeeccCccHHHHHHHHcCC
Confidence 34568899999999999999999887543 5999999873 1 2356899999997632 344
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
..+|+|++.+.-.. .+..-..+.....-...+++-+..+|+|||.+++-.+....
T Consensus 110 ~~~DvV~sD~ap~~----~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 110 APVDVVLSDMAPNT----SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCcceEEecCCCCc----CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 45799997543210 01111111233344456777788899999999997775443
No 234
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.26 E-value=1.4e-05 Score=60.75 Aligned_cols=103 Identities=31% Similarity=0.419 Sum_probs=70.6
Q ss_pred EEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCC-CceeEEEecceee
Q 025039 62 VLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSN-DCFDVVIEKATME 136 (259)
Q Consensus 62 vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~V~~~~~l~ 136 (259)
++|+|||+|... .+..... ..++++|+++.++..++..........+.+...+... .++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 3333332 2788999999999986555432111115777777765 56555 479999 443332
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
+. . . ....+.++.+.++|+|.+++......
T Consensus 130 ~~-------------~-~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HL-------------L-P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hc-------------C-C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 22 0 1 67899999999999999998776543
No 235
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.26 E-value=2.7e-06 Score=69.30 Aligned_cols=105 Identities=23% Similarity=0.245 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHH-------hhcCC--CCeEEEEcccCCCcCC---
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERL-------LLKGY--KEVKVLEADMLDLPFS--- 122 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~-------~~~~~--~~v~~~~~d~~~~~~~--- 122 (259)
+.++..++|+|||.|......+-. +..+++|+|+.+...+.|+... +..+. ..+.+..+|+.+.++.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 567899999999999988766644 5547999999999888776532 22232 3477788888763311
Q ss_pred CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
-...|+|++++... + ++....|.+....||+|.+++..
T Consensus 120 ~s~AdvVf~Nn~~F---------------~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTCF---------------D-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TTT-----------------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEecccc---------------C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 13579999876531 1 45566668888889999887753
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=5.4e-05 Score=60.47 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=89.1
Q ss_pred CcccccccchHHHHhhccc-----CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeE
Q 025039 37 EHYEWLKDYSHFRHLVQPH-----IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVK 110 (259)
Q Consensus 37 ~~~~w~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~ 110 (259)
....|-...+.+...+... ++++.+||-+|+.+|....+++..... .++++|+|+.+....-..+..+ +|+-
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~ 127 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNII 127 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCce
Confidence 3445777766666655533 458999999999999999999987544 8999999999888777766654 4777
Q ss_pred EEEcccCCCc---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 111 VLEADMLDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 111 ~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
-+.+|+.... .--+.+|+|+..- ..+.+..-+..++...|++||.++++
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~DV-----------------AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQDV-----------------AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEEec-----------------CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 7888887632 1124688888521 12345666788899999999988774
No 237
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.14 E-value=2.2e-05 Score=66.63 Aligned_cols=76 Identities=20% Similarity=0.359 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC---CceeEEEecc
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN---DCFDVVIEKA 133 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V~~~~ 133 (259)
.++..|||+|+|+|.++..|++.+. +++++|+++.+++..++++.. .++++++.+|+.++.... .....|+++-
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~~-~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRGK-RVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHSS-EEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred CCCCEEEEeCCCCccchhhHhcccC-cceeecCcHhHHHHHHHHhhh--cccceeeecchhccccHHhhcCCceEEEEEe
Confidence 3789999999999999999999995 999999999999999998762 257999999999876443 3456777765
Q ss_pred ee
Q 025039 134 TM 135 (259)
Q Consensus 134 ~l 135 (259)
++
T Consensus 106 Py 107 (262)
T PF00398_consen 106 PY 107 (262)
T ss_dssp TG
T ss_pred cc
Confidence 54
No 238
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.12 E-value=8.6e-06 Score=62.31 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=51.1
Q ss_pred cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039 61 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 118 (259)
Q Consensus 61 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 118 (259)
.+||+|||.|..+..++..++. +++++|+++.+.+.++++++.++++++.+.+..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999999998876 899999999999999999988887778887766654
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.11 E-value=1.4e-05 Score=67.68 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=64.4
Q ss_pred CCcEEEEcCCC-CcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHh-hcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039 59 NSSVLELGCGN-SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLL-LKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 59 ~~~vLDiGcG~-G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~-~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
+.+|+=||||+ -..++.+++. +.. .++++|+++.+++.+++-++ ..++. .+.+.++|..+....-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999998 4555555554 443 79999999999999998776 33333 48999999877654446799998655
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.... ..+...+++..+.+.++||..+++-
T Consensus 201 lVg~--------------~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGM--------------DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S------------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hccc--------------ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 4321 2346789999999999999999986
No 240
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.08 E-value=1.8e-05 Score=64.11 Aligned_cols=93 Identities=24% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC---CCCceeEEEeccee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKATM 135 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V~~~~~l 135 (259)
..++||+||=+......-. ... .|+.||+++. .-.+.+.|+.+.|. +.+.||+|.++-++
T Consensus 52 ~lrlLEVGals~~N~~s~~-~~f-dvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-GWF-DVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCccccc-Cce-eeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 3689999998665554321 123 7999999862 34557788888664 36789999999999
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE-----EEEEecCC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL-----FISVSFGQ 180 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~ 180 (259)
.++ .+....-+.+..+.+.|+|+|. |+++.+..
T Consensus 115 NfV------------P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 115 NFV------------PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred eeC------------CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 988 3567888999999999999999 88876643
No 241
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.04 E-value=6.7e-07 Score=71.36 Aligned_cols=94 Identities=18% Similarity=0.349 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
.+.++||+|+|.|..+..++.... +|++.+.|..|..+.+.+ ++.-+.. .++.+ .+-++|+|.|...++-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~kk----~ynVl~~--~ew~~---t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLKKK----NYNVLTE--IEWLQ---TDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHhhc----CCceeee--hhhhh---cCceeehHHHHHHHHh
Confidence 357899999999999998887655 899999999998887764 3311111 12222 2347999999888865
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccC-CcEEEEE
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP-DGLFISV 176 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 176 (259)
. .++-.+|+.++.+|+| +|.+++.
T Consensus 182 c---------------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 C---------------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred h---------------cChHHHHHHHHHHhccCCCcEEEE
Confidence 4 4567899999999999 8888863
No 242
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=5.7e-06 Score=74.47 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=55.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 118 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 118 (259)
++.+..+||++||||..++.+++... +|+|+++++.+++.|+.++..+|+.|.+|+++.+.+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 45678899999999999999987755 999999999999999999999999999999996655
No 243
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.01 E-value=2.1e-05 Score=62.77 Aligned_cols=111 Identities=19% Similarity=0.350 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC-------CCCeEEEEcccCCC-c--CCCCce
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-------YKEVKVLEADMLDL-P--FSNDCF 126 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~-~--~~~~~f 126 (259)
..-.+.|||||-|.+++.|+...+. -+.|+||--+.-++.++++.... ++++.++..+.... | +..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3457999999999999999999888 89999999999999998877665 56677777766552 2 122221
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchh--HHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPET--VTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.-.+ +++ .+|++....+ .---..++.+..-+|++||.++.++
T Consensus 140 skmf------f~f---pdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMF------FLF---PDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccce------eec---CChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 1111 011 1111110000 0112368889999999999999865
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.93 E-value=3.5e-05 Score=66.82 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
+.++.++||+||++|..+..+.+.|. +|++||..+ +- ..+.. -++|....+|......+.+.+|.++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~--~~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD--TGQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC--CCCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 35789999999999999999999998 999999654 22 22221 24688888887765423568999998544
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 170 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 170 (259)
..+.++++-+.++|..|
T Consensus 280 ------------------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------------------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------------------cCHHHHHHHHHHHHhcC
Confidence 34456666666777554
No 245
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.91 E-value=8.7e-06 Score=59.10 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=42.8
Q ss_pred EEEcCCCCcchHHHHhcCC----CeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC--cCCCCceeEEEeccee
Q 025039 63 LELGCGNSRLSEGLYNDGI----TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL--PFSNDCFDVVIEKATM 135 (259)
Q Consensus 63 LDiGcG~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~--~~~~~~fD~V~~~~~l 135 (259)
||+|+..|..+..+++... .+++++|..+. .+.+++.++..++. +++++.++..+. .++.+++|+++..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 6899999998888877522 26999999984 22233333323333 489999887652 133468999985432
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+..+.....+..+.+.|+|||++++-+
T Consensus 79 ---------------H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 ---------------HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----------------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ---------------CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 133567788999999999999998754
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.91 E-value=0.00013 Score=58.89 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=81.7
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~ 132 (259)
...++.+||.+|=|-|...-.+.++-+.+=+.++..+..++.++...-... .+|.+..+-+.+. .++++.||-|+
T Consensus 98 i~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~-- 174 (271)
T KOG1709|consen 98 ISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIY-- 174 (271)
T ss_pred HhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeE--
Confidence 346789999999999999999988877778889999999999987643222 3577777766552 25677899988
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++.. + +..++...+.+.+.++|||+|++-+.
T Consensus 175 --yDTy----~-------e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 175 --YDTY----S-------ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred --eech----h-------hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 3332 0 24578889999999999999999874
No 247
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00012 Score=63.65 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=87.5
Q ss_pred HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCC---C--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--
Q 025039 48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI---T--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-- 120 (259)
Q Consensus 48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 120 (259)
+...+...++|+.+|||+|+.+|.-+..+.+... . .|++-|+++..+......+....-++..+...++...+
T Consensus 145 mlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~ 224 (375)
T KOG2198|consen 145 MLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNI 224 (375)
T ss_pred ccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccc
Confidence 3333444578999999999999999988887633 1 69999999999999888776554444555555544332
Q ss_pred -------CCCCceeEEEecce-ee-eeeeCCCCC----CCCCc-hh-HHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 121 -------FSNDCFDVVIEKAT-ME-VLFVNSGDP----WNPQP-ET-VTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 121 -------~~~~~fD~V~~~~~-l~-~~~~~~~~~----~~~~~-~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
.....||-|+|.-+ -+ -.+.....- |..+. .+ ..-...+|.+..++||+||.++..+++....
T Consensus 225 ~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 225 YLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred ccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 12346999886421 11 111111111 21111 11 1234578999999999999999999876543
No 248
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.87 E-value=0.00047 Score=56.90 Aligned_cols=114 Identities=20% Similarity=0.208 Sum_probs=69.8
Q ss_pred hhcccCCCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcC-CCCcee
Q 025039 51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPF-SNDCFD 127 (259)
Q Consensus 51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD 127 (259)
+....--.|++||-+|=+-- .++.++-.+ +.+|+.+|+++..++..++.+++.|++ ++....|+.+ +|. -.++||
T Consensus 37 ~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp HHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BS
T ss_pred HHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCC
Confidence 33343346889999995543 333333333 349999999999999999999999985 9999999977 331 147899
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
+++..++. +.+...-++.+....||..|...+..++..+
T Consensus 115 ~f~TDPPy----------------T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 115 VFFTDPPY----------------TPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp EEEE---S----------------SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred EEEeCCCC----------------CHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 99987654 6688889999999999987755555565543
No 249
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=6.3e-06 Score=63.33 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCC-CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC---CCCeEEEEcccCC--CcCCCCceeEEE
Q 025039 58 PNSSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLD--LPFSNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~--~~~~~~~fD~V~ 130 (259)
.+.+|||+|.|- |..++.++...+. .|...|-+++.++..++....+. ++.+.++.-+... .......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 578999999996 6666666666555 89999999999999887655442 2222222222211 112345899999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccC
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN 189 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 189 (259)
|..++.. .+-...+++.+..+|+|.|.-++..+.+......+..
T Consensus 109 aADClFf---------------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d 152 (201)
T KOG3201|consen 109 AADCLFF---------------DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD 152 (201)
T ss_pred eccchhH---------------HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence 9766532 2556788999999999999998887776655544444
No 250
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.86 E-value=6.9e-05 Score=64.13 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCcchHHHHh--cCCCeEEEeeCCHHHHHHHHHHHhhc-CCCC-eEEEEcc----cCC-CcCCCCceeEE
Q 025039 59 NSSVLELGCGNSRLSEGLYN--DGITAITCIDLSAVAVEKMQERLLLK-GYKE-VKVLEAD----MLD-LPFSNDCFDVV 129 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d----~~~-~~~~~~~fD~V 129 (259)
..++||||||....--.|.. .+. +++|+|+++..++.|++++..+ ++.. |+++... +.. +..+.+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 46899999998754333332 244 9999999999999999999998 6654 8776542 222 22234689999
Q ss_pred Eecceeeee
Q 025039 130 IEKATMEVL 138 (259)
Q Consensus 130 ~~~~~l~~~ 138 (259)
+|+++|+..
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999998654
No 251
>PRK10742 putative methyltransferase; Provisional
Probab=97.85 E-value=5.3e-05 Score=62.96 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCCCC--cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc------C--C-CCeEEEEcccCCC-cCCC
Q 025039 56 IKPNS--SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK------G--Y-KEVKVLEADMLDL-PFSN 123 (259)
Q Consensus 56 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~v~~~~~d~~~~-~~~~ 123 (259)
++++. +|||+.+|.|..+..++..|. +|+++|-++......++++... + + .+++++++|..+. ....
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 34555 899999999999999999998 6999999999999999888763 2 1 3578888887653 2122
Q ss_pred CceeEEEecceeee
Q 025039 124 DCFDVVIEKATMEV 137 (259)
Q Consensus 124 ~~fD~V~~~~~l~~ 137 (259)
.+||+|+..++|.+
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999998877744
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.82 E-value=0.00038 Score=57.79 Aligned_cols=92 Identities=22% Similarity=0.308 Sum_probs=64.1
Q ss_pred ccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC
Q 025039 43 KDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 121 (259)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 121 (259)
.....+...+...++++.+|+|+|||.=-++..+...... .++|.|+++.+++.....+...+. +..+...|...-+
T Consensus 90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~- 167 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDP- 167 (251)
T ss_dssp GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSH-
T ss_pred hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccC-
Confidence 3344555555566677899999999998887776666544 999999999999999998888774 5677777876644
Q ss_pred CCCceeEEEecceee
Q 025039 122 SNDCFDVVIEKATME 136 (259)
Q Consensus 122 ~~~~fD~V~~~~~l~ 136 (259)
+....|+.+..=+++
T Consensus 168 ~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 168 PKEPADLALLLKTLP 182 (251)
T ss_dssp TTSEESEEEEET-HH
T ss_pred CCCCcchhhHHHHHH
Confidence 346799998754443
No 253
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.81 E-value=0.00024 Score=53.97 Aligned_cols=91 Identities=23% Similarity=0.322 Sum_probs=58.8
Q ss_pred eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc--CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHH
Q 025039 83 AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAM 159 (259)
Q Consensus 83 ~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
+|+++|+.+++++.+++++...+..+ ++++..+-..+. .+.+.+|+++.| |.++.. +++-. ....+.-...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPg--gDk~i--~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPG--GDKSI--TTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CT--S-TTS--B--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCC--CCCCC--CcCcHHHHHH
Confidence 58999999999999999999988765 888876655543 233479998855 333311 11110 0123455678
Q ss_pred HHHHHhcccCCcEEEEEecC
Q 025039 160 LEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 160 l~~~~~~LkpgG~l~~~~~~ 179 (259)
++.+.++|+|||++.++.+.
T Consensus 75 l~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHhhccCCEEEEEEeC
Confidence 99999999999999998875
No 254
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.78 E-value=0.00021 Score=54.80 Aligned_cols=77 Identities=27% Similarity=0.376 Sum_probs=56.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHh-----cCCC-eEEEeeCCHHHHHHHHHHHhhcC--C-CCeEEEEcccCCCcCCCCcee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYN-----DGIT-AITCIDLSAVAVEKMQERLLLKG--Y-KEVKVLEADMLDLPFSNDCFD 127 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~fD 127 (259)
.+..+|+|+|||.|.++..++. . +. +|+++|.++..++.+.++.+..+ + .++.+..++..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4578999999999999999998 4 44 99999999999999999887766 3 23555555444322 134567
Q ss_pred EEEecceeeee
Q 025039 128 VVIEKATMEVL 138 (259)
Q Consensus 128 ~V~~~~~l~~~ 138 (259)
+++. +|..
T Consensus 102 ~~vg---LHaC 109 (141)
T PF13679_consen 102 ILVG---LHAC 109 (141)
T ss_pred EEEE---eecc
Confidence 7776 5544
No 255
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00019 Score=61.05 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=73.2
Q ss_pred hHHHHhhcccCCC------CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH---hhc------------
Q 025039 46 SHFRHLVQPHIKP------NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL---LLK------------ 104 (259)
Q Consensus 46 ~~~~~~l~~~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~~------------ 104 (259)
..+...+..+.++ ..+||..|||.|+++..++..|+ .+-|-|+|--|+=...=.+ +..
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence 3344444444443 56899999999999999999999 7888888876654322111 000
Q ss_pred -------------CCCCeEE------------EEcccCCC---cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHH
Q 025039 105 -------------GYKEVKV------------LEADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKV 156 (259)
Q Consensus 105 -------------~~~~v~~------------~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (259)
.+|++.. -.||+.+. +...+.||+|+...-++ ...+.
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID---------------Ta~Ni 275 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID---------------TAHNI 275 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee---------------chHHH
Confidence 0111111 11333221 11224688887653333 44788
Q ss_pred HHHHHHHHhcccCCcEEEEEec
Q 025039 157 MAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 157 ~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
-++|+.+.++|+|||+.+=+.+
T Consensus 276 leYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 276 LEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred HHHHHHHHHhccCCcEEEeccc
Confidence 8999999999999999986543
No 256
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00034 Score=55.29 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=70.3
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCC--------cCCC
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDL--------PFSN 123 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~--------~~~~ 123 (259)
.+.|+.+|||+||.+|..+.-..++. ++ .|.|+|+-.- .....+.++.+ |+.+. .+++
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 45789999999999999999887764 55 8999998531 12234566665 66552 1466
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
..+|+|++.+.-... |..-..+....+.-.+++--....++|+|.+++-.+..
T Consensus 135 r~VdvVlSDMapnaT----Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNAT----GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCc----CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 789999975432111 11000011122233345555667889999999977754
No 257
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00044 Score=52.53 Aligned_cols=106 Identities=13% Similarity=0.238 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEeccee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
++..+.+|+|+|.|+.....++.|....+|+|+++-.+..++-..-..++.. ..|..-|+.+..+.+-.+-+|+.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg---- 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG---- 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee----
Confidence 3557999999999999999999985589999999999999988777777654 78888888887765544444442
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
..+....+-.++..-|..|..++.+-|-.|.
T Consensus 147 ----------------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 147 ----------------AESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ----------------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 1234556667777788899999987665544
No 258
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00029 Score=57.90 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeE-EEEcccCCCc---CCCCceeEEEec
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLP---FSNDCFDVVIEK 132 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~---~~~~~fD~V~~~ 132 (259)
.++..+||+|+.||.++..+.+.|...|+++|..-..+..--+. -+++. ....|+..+. +. +..|+++|.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 47899999999999999999999998999999986554432221 13443 3445665543 22 367899876
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
-+| -.+..+|..+..+++|+|.++..
T Consensus 152 vSF------------------ISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 152 VSF------------------ISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred eeh------------------hhHHHHHHHHHHhcCCCceEEEE
Confidence 554 34568899999999999988874
No 259
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.61 E-value=0.00026 Score=61.46 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHH--hhc---CC--CCeEEEEcccCCC-cCCCCcee
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL--LLK---GY--KEVKVLEADMLDL-PFSNDCFD 127 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~--~~~---~~--~~v~~~~~d~~~~-~~~~~~fD 127 (259)
+...+||-+|.|.|.-+..+.+.- ..+++-+|++|+|++.++++. ... .+ ++++++..|+.++ ....+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 455789999999999999998874 449999999999999998432 211 22 4578888887763 23345899
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+|+..- .++..+-. ..-=-.++..-+++.|+++|.+++-.
T Consensus 368 ~vIVDl------~DP~tps~----~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDL------PDPSTPSI----GRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeC------CCCCCcch----hhhhhHHHHHHHHHhcCcCceEEEec
Confidence 998531 11111100 00112467788899999999999854
No 260
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.60 E-value=0.00027 Score=59.40 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=68.9
Q ss_pred CcEEEEcCCC--CcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CC----CCcee--
Q 025039 60 SSVLELGCGN--SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FS----NDCFD-- 127 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~----~~~fD-- 127 (259)
..+||+|||- -.....+++. .+. +|+-+|.++-.+..++..+....-....++.+|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 6799999995 3455556554 444 99999999999999999887654212788999998732 11 12233
Q ss_pred ---EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 128 ---VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 128 ---~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.++..+++|++ .+.++...++..+...|.||.+|++.-..
T Consensus 150 rPVavll~~vLh~v------------~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 150 RPVAVLLVAVLHFV------------PDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp S--EEEECT-GGGS-------------CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCeeeeeeeeeccC------------CCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 45667888877 24467889999999999999999997554
No 261
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00013 Score=62.86 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc----CCCcCCCCceeEEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM----LDLPFSNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~~~~~~~~fD~V~ 130 (259)
.+.+|||+|.|+|..+.++....+. .++.++.|+..-++.... ..+-.+. ..+...|+ ..++. ...+++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCCc-cceeehhh
Confidence 3567999999999988777776665 788899888765555443 2221111 12222232 22332 23455555
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
. ++.+..+. ....+...++.+..++.|||.+++++.+.+
T Consensus 191 ~---~~eLl~d~---------~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 191 V---LDELLPDG---------NEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred h---hhhhcccc---------CcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 4 44442221 122345589999999999999999998765
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.53 E-value=0.00041 Score=59.76 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeEEE
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVI 130 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~ 130 (259)
.++..++|.-+|.|..+..+++..+ .+|+|+|.++.+++.+++++...+ .++.++++++.++. ....++|.|+
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 4678999999999999999988743 399999999999999999887543 36889998887643 2335688887
Q ss_pred ec
Q 025039 131 EK 132 (259)
Q Consensus 131 ~~ 132 (259)
..
T Consensus 98 ~D 99 (305)
T TIGR00006 98 VD 99 (305)
T ss_pred Ee
Confidence 54
No 263
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.51 E-value=0.00036 Score=59.79 Aligned_cols=109 Identities=19% Similarity=0.278 Sum_probs=74.2
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-c-cCCC------cCCCC
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-D-MLDL------PFSND 124 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d-~~~~------~~~~~ 124 (259)
.++.+.+||-+|+|+ |..+...++. |..+|+.+|+++..++.|++ + |.+.+..... + ..++ .....
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence 456889999999999 8888888776 55599999999999999998 3 3322222111 1 1110 12223
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcccccccc
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF 188 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 188 (259)
.+|+.+.-. .....++.+...+++||.++++.++.+...-++.
T Consensus 242 ~~d~~~dCs---------------------G~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~ 284 (354)
T KOG0024|consen 242 QPDVTFDCS---------------------GAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPII 284 (354)
T ss_pred CCCeEEEcc---------------------CchHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence 488877432 2345677778899999999999888765443333
No 264
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.48 E-value=0.001 Score=61.41 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=87.3
Q ss_pred hHHHHhhcccCC--CCCcEEEEcCCCCcchHHHHhcCC-----CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccC
Q 025039 46 SHFRHLVQPHIK--PNSSVLELGCGNSRLSEGLYNDGI-----TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADML 117 (259)
Q Consensus 46 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 117 (259)
+.+..++...+. +..+|+|.+||+|.+.....+... ..++|.|+++.....|+-++-.+++.. +....+|-.
T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 344444443333 567999999999987776655421 269999999999999999998888752 455555544
Q ss_pred CCc-C----CCCceeEEEecceee-eeeeCCC--C-------CCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 118 DLP-F----SNDCFDVVIEKATME-VLFVNSG--D-------PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 118 ~~~-~----~~~~fD~V~~~~~l~-~~~~~~~--~-------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.-+ . ..+.||.|++++++. .-..... . .+...+.........++.+...|+|||+.-++.+..
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 323 1 235799999999884 1111100 0 011111122233788999999999998777665544
No 265
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.46 E-value=0.0017 Score=52.60 Aligned_cols=120 Identities=19% Similarity=0.210 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcC---CCeEEEeeCCHHHHHHHHHHHhhc------------------------------
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDG---ITAITCIDLSAVAVEKMQERLLLK------------------------------ 104 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~------------------------------ 104 (259)
.+.++.|.+||.|.++-.+.-.. ...|++.|+++++++.|++|+...
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 45789999999999776554432 228999999999999998876322
Q ss_pred ------------CCCCeEEEEcccCCCc-----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc
Q 025039 105 ------------GYKEVKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL 167 (259)
Q Consensus 105 ------------~~~~v~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 167 (259)
+.....+.+.|+++.. ......|+|+..-++..+ ..|..+ ........+|..+..+|
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~-----t~W~g~-~~~~p~~~ml~~l~~vL 204 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEM-----TSWQGE-GSGGPVAQMLNSLAPVL 204 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCS-----SSTTS----HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccc-----ccccCC-CCCCcHHHHHHHHHhhC
Confidence 1223567778887721 122347999976665443 346542 23346778999999999
Q ss_pred cCCcEEEEEecCCccc
Q 025039 168 KPDGLFISVSFGQPHF 183 (259)
Q Consensus 168 kpgG~l~~~~~~~~~~ 183 (259)
.+++++.+++-+++..
T Consensus 205 p~~sVV~v~~k~~Ki~ 220 (246)
T PF11599_consen 205 PERSVVAVSDKGRKIP 220 (246)
T ss_dssp -TT-EEEEEESSSS--
T ss_pred CCCcEEEEecCCcccc
Confidence 6666666654444443
No 266
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00064 Score=54.07 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHH------HHHHHHHhhcCCCCeEEEEcccCCCcCCCCc
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAV------EKMQERLLLKGYKEVKVLEADMLDLPFSNDC 125 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~------~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 125 (259)
..++++.+|+|+=.|.|..+..++.. |+. .|+++-..+... ...+....+..+.|+..+-.+...+. +.+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 45789999999999999999998876 443 676665443211 11111111222334555444444444 3456
Q ss_pred eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.|+++.....|.+... .. +......+...+.+.|||||++++.++.
T Consensus 123 ~d~~~~~~~yhdmh~k----~i----~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 123 LDLVPTAQNYHDMHNK----NI----HPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ccccccchhhhhhhcc----cc----CcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 7887765554433111 00 2345667888899999999999998764
No 267
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.41 E-value=0.0011 Score=54.40 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=77.2
Q ss_pred ccccchHHHHhhc-----ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE
Q 025039 41 WLKDYSHFRHLVQ-----PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE 113 (259)
Q Consensus 41 w~~~~~~~~~~l~-----~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~ 113 (259)
|-.-.+.+..-+. .+++++.+||-+|+++|....++... |+. -|+++|+|+..-...-.-++++ +||--+.
T Consensus 134 WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIi 211 (317)
T KOG1596|consen 134 WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPII 211 (317)
T ss_pred eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeee
Confidence 4444444444333 35679999999999999999999886 555 8999999976544433332222 4766677
Q ss_pred cccCCCc---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 114 ADMLDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 114 ~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.|+.... ..-..+|+|++. .. .+.+..-+.-++...||+||.+++..
T Consensus 212 EDArhP~KYRmlVgmVDvIFaD---------va--------qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 212 EDARHPAKYRMLVGMVDVIFAD---------VA--------QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ccCCCchheeeeeeeEEEEecc---------CC--------CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 7876522 122356666642 11 22445556667889999999999863
No 268
>PHA01634 hypothetical protein
Probab=97.31 E-value=0.0014 Score=48.50 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 130 (259)
.+.+|+|+|++.|..+++++-+|...|+++++++...+..+++++.+.+-+-.+....+.. .=+.||+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---EYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---cCCCcceEE
Confidence 5789999999999999999999998999999999999999998876543221222222222 224678766
No 269
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.19 E-value=0.0012 Score=58.76 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCc-CCCCceeEEEec
Q 025039 58 PNSSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLP-FSNDCFDVVIEK 132 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~-~~~~~fD~V~~~ 132 (259)
.+.+|||.=+|+|.-++..+.. +..+|+.-|+|+++++.+++|++.+++.. +.+.+.|+..+- .....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4568999999999888877766 33499999999999999999999999876 778888876532 245789998532
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+| ..+..+|+.+.+.++.||.|.+..
T Consensus 129 -Pf------------------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 -PF------------------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --S------------------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CC------------------CCccHhHHHHHHHhhcCCEEEEec
Confidence 11 344679999999999999999863
No 270
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.17 E-value=0.0011 Score=57.15 Aligned_cols=122 Identities=22% Similarity=0.215 Sum_probs=84.6
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHH-------HHHHHhhcCCCC--eEEEEcccCCCcC-CCC
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEK-------MQERLLLKGYKE--VKVLEADMLDLPF-SND 124 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-------a~~~~~~~~~~~--v~~~~~d~~~~~~-~~~ 124 (259)
.+.+|+.|+|.-.|||.++...+..|. -|+|.||+-.++.. .+.+++..|... +.++.+|....++ ...
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 456899999999999999999999988 89999999888772 455677666432 6777888877553 356
Q ss_pred ceeEEEecceeeee---------------eeCCCCCCCCCch---hHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 125 CFDVVIEKATMEVL---------------FVNSGDPWNPQPE---TVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 125 ~fD~V~~~~~l~~~---------------~~~~~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.||.|+|.+++..- -.+...-+-|..+ -......+|.-..+.|..||++++-.
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 89999998876311 0000000111111 12234567777889999999999753
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=97.11 E-value=0.0011 Score=56.85 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039 47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL 102 (259)
Q Consensus 47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 102 (259)
.+..++.....+|+.|||..||+|..+..+.+.|- +.+|+|++++.++.|++++.
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 34556666667999999999999999999988887 99999999999999999975
No 272
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.08 E-value=0.00087 Score=59.32 Aligned_cols=102 Identities=24% Similarity=0.259 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCC--CcCC-CCceeEEE
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLD--LPFS-NDCFDVVI 130 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~--~~~~-~~~fD~V~ 130 (259)
.++.+|+-+|||+ |.++..+++. |..+|+++|.++..++.|++..... .+..... +... .... ...+|+++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 3445899999999 9998877776 5459999999999999999854211 0111111 1100 0111 23699988
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
-... ....+..+.++++|||.++++......
T Consensus 244 e~~G---------------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 EAVG---------------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ECCC---------------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 4321 235889999999999999998765433
No 273
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.98 E-value=0.0013 Score=54.01 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=42.4
Q ss_pred hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039 46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE 99 (259)
Q Consensus 46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~ 99 (259)
.-+..++.....++..|||.-||+|..+.++.+.|- +.+|+|++++.++.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 345566666678899999999999999999999988 89999999999998864
No 274
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.95 E-value=0.0012 Score=58.64 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=50.2
Q ss_pred CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc
Q 025039 60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM 116 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~ 116 (259)
..|||+|+|||.++...++.|...|++++.-..|.+.|++....+|+.+ |.++..--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 4689999999999999999997799999999999999999999998865 77775433
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.95 E-value=0.0028 Score=55.29 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred ccCCCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc-cCCCcCCCCceeEEE
Q 025039 54 PHIKPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLDLPFSNDCFDVVI 130 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD~V~ 130 (259)
..+.|+.+|+-+|+|. |.+++.+++ .|. +|+++|.+++-.+.|++.-. ..++... -.....-.+.||+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEE
Confidence 3467899999999984 677888887 564 99999999999988887622 2233322 111111112499998
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
..-+ ...+....+.|++||.++++..-
T Consensus 235 ~tv~----------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 235 DTVG----------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ECCC----------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 6332 45688889999999999998655
No 276
>PRK13699 putative methylase; Provisional
Probab=96.88 E-value=0.0029 Score=52.49 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=48.0
Q ss_pred HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039 48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK 104 (259)
Q Consensus 48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 104 (259)
+..++.....++..|||.-||+|..+....+.|. +++|+|++++..+.+.+++...
T Consensus 153 ~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 153 LQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 4455555667899999999999999999988887 8999999999999999987643
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.87 E-value=0.0028 Score=52.40 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=47.3
Q ss_pred CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh---hcC-C-----CCeEEEEcccCC-CcCCCCceeEE
Q 025039 60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL---LKG-Y-----KEVKVLEADMLD-LPFSNDCFDVV 129 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~-~-----~~v~~~~~d~~~-~~~~~~~fD~V 129 (259)
.+|||.-+|-|..+..++..|. +|+++|-|+-+....+.-+. ... . .+++++++|..+ +..++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999999998887 89999999887666554322 111 1 258899999877 44456899999
Q ss_pred Eecceeee
Q 025039 130 IEKATMEV 137 (259)
Q Consensus 130 ~~~~~l~~ 137 (259)
+..++|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 98777643
No 278
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.82 E-value=0.0031 Score=53.88 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=53.6
Q ss_pred cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC--CCceeEEEecce
Q 025039 61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS--NDCFDVVIEKAT 134 (259)
Q Consensus 61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~~~ 134 (259)
+++|+.||.|.+...+.+.|...+.++|+++.+++..+.++.. . +.++|+.++... ...+|+++...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhcCCCCCEEEeCCC
Confidence 6899999999999999999986788999999999998887642 1 456677665422 346999997654
No 279
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.81 E-value=0.0035 Score=50.80 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc----C----CC
Q 025039 58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP----F----SN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~----~----~~ 123 (259)
++..|+|+|.-.|..++++++. +.. +|+|+|++-...... ..+.... ++|+++++|..+.. . ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 5789999999999988888763 333 999999964332221 1222122 46999999987632 1 11
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
....+|+..+. +........|+....++++|+++++.+
T Consensus 110 ~~~vlVilDs~----------------H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 110 PHPVLVILDSS----------------HTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp -SSEEEEESS--------------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCceEEEECCC----------------ccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 23345553221 122345677788999999999999853
No 280
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0039 Score=52.85 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=82.7
Q ss_pred HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhc--CC--CCeEEEEcccCCCc-
Q 025039 47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLK--GY--KEVKVLEADMLDLP- 120 (259)
Q Consensus 47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~- 120 (259)
.+.++....+..++++|-+|.|-|......++.. ..++..+|+++..++..++.+... ++ +++.+.-+|...+-
T Consensus 110 mi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~ 189 (337)
T KOG1562|consen 110 MIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE 189 (337)
T ss_pred eeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH
Confidence 3344444445667899999999999988877762 228999999999999998876544 23 35788888876532
Q ss_pred -CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 121 -FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 121 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.+.+.||+|+.... +|-. |...-=.+.+.+.+.+.||++|+++...
T Consensus 190 ~~~~~~~dVii~dss---------dpvg--pa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 190 DLKENPFDVIITDSS---------DPVG--PACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred HhccCCceEEEEecC---------Cccc--hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 34678999985311 1100 1111224578888999999999999864
No 281
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.71 E-value=0.0051 Score=54.10 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA 133 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~ 133 (259)
.++.+||-.|||. |..+..+++. |..+++++|.+++.++.+++. |.+. +.....++.+.....+.+|+|+...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 4678999999876 7777777766 444799999999988887653 3221 1111112222111123588887531
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
. ....+..+.++|++||.++++...
T Consensus 244 G---------------------~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 244 G---------------------HPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred C---------------------CHHHHHHHHHHhhcCCEEEEEccC
Confidence 1 124567788899999999987653
No 282
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0062 Score=49.91 Aligned_cols=80 Identities=13% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCCCcchH--HHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-CCCC-eEEEEcccCC-----CcCCCCceeE
Q 025039 58 PNSSVLELGCGNSRLSE--GLYNDGITAITCIDLSAVAVEKMQERLLLK-GYKE-VKVLEADMLD-----LPFSNDCFDV 128 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~--~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d~~~-----~~~~~~~fD~ 128 (259)
++.++||||.|.--.-- -..+.|. +.+|.|+++.+++.|+..+..+ ++.+ +++....-.+ +.-..+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 55789999988643222 2233456 8999999999999999998877 4433 5554321111 1123578999
Q ss_pred EEecceeeee
Q 025039 129 VIEKATMEVL 138 (259)
Q Consensus 129 V~~~~~l~~~ 138 (259)
++|+++||..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999999754
No 283
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.0023 Score=52.30 Aligned_cols=104 Identities=23% Similarity=0.278 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCcchHHHHhcC--------CC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-------
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDG--------IT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------- 120 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~--------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------- 120 (259)
.-.+++|+++.+|..+..|.++. .. .+++||+.+.+ .++.|.-+++|+....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHH
Confidence 34789999999999999887752 11 39999997631 3456777889987632
Q ss_pred -CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 121 -FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 121 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
|..+..|+|+|.+.-+..-...-+.+ -..+-+...|.-...+|+|||.|+.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy----~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEY----VQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHH----HHHHHHHHHHHHHhheecCCCeeehh
Confidence 56678999999875432200000000 01123345666677899999999964
No 284
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.50 E-value=0.0025 Score=57.84 Aligned_cols=99 Identities=14% Similarity=0.283 Sum_probs=63.8
Q ss_pred CcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecceee
Q 025039 60 SSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATME 136 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~ 136 (259)
..|+|+.+|.|.++.+|.+...- +|+-+ ..+..+...-++ |+ --+..|+.+ ++.-..+||+|-+.+.|.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---chhccchhhccCCCCcchhheehhhhhh
Confidence 56999999999999999876432 23322 122222222222 22 112335443 333347899999988876
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.. .+.-+...++-++-|+|+|+|.+++-+.
T Consensus 439 ~~------------~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 439 LY------------KDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hh------------cccccHHHHHHHhHhhcCCCceEEEecc
Confidence 54 1334578899999999999999998643
No 285
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.45 E-value=0.019 Score=53.23 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEE--Ecc------cCCCc------
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVL--EAD------MLDLP------ 120 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~--~~d------~~~~~------ 120 (259)
.++.+|+-+|||. |..++..++. |. +|+++|.+++.++.+++. |...+.+- ..+ +..+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCeEEEeccccccccccchhhhcchhHHHH
Confidence 3689999999999 8888777665 65 899999999999988763 32111110 000 00000
Q ss_pred ----CC--CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 121 ----FS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 121 ----~~--~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+. ...+|+|+...... ....+.-+.++..+.+||||+++.+...
T Consensus 238 ~~~~~~~~~~gaDVVIetag~p---------------g~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIP---------------GKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCC---------------cccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 01 13589998643221 0011223358999999999999987653
No 286
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.42 E-value=0.022 Score=47.58 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-----CCC-CeEEEEcccCCC---cCCCCc-eeE
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-----GYK-EVKVLEADMLDL---PFSNDC-FDV 128 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~-~v~~~~~d~~~~---~~~~~~-fD~ 128 (259)
...|||+|+|+|..++.++..+..+++..|.-. .++..+.+...+ ++. .+.+...++... .+.... +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 457999999999888887776555888888643 444443332222 111 344433333321 122223 899
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+++.++... .....++..++..|..+|.+++...
T Consensus 166 ilasDvvy~~---------------~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 166 ILASDVVYEE---------------ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEeeeeecC---------------CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9987766322 3445677778888888886655543
No 287
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0083 Score=52.49 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEecceee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATME 136 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 136 (259)
+.+|||.-+|+|.=++..+..... +++.-|+||++++.+++|++.+...+..++..|+..+- .....||+|=. .+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI-DPF- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-CCC-
Confidence 679999999999988888777555 89999999999999999999884445666667765532 12367888642 222
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
..+..+++.+.+.++.||++.+.
T Consensus 131 -----------------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 131 -----------------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred -----------------CCCchHHHHHHHHhhcCCEEEEE
Confidence 22346899999999999999985
No 288
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.0086 Score=54.61 Aligned_cols=101 Identities=20% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCcchHHHHhc---CC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039 59 NSSVLELGCGNSRLSEGLYND---GI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~---~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
...|+-+|+|-|-+.....+. .. . +++++|-+|.++-..+.+ .....+ .|+++..|+.+++.+.++.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 346889999999877655443 11 2 899999999998877653 222333 4999999999988556899998853
Q ss_pred --ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 133 --ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 133 --~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
+.| | +-+--.+.|..+.+.|||+|+.+=
T Consensus 447 LLGSF-------G--------DNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSF-------G--------DNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccc-------c--------CccCCHHHHHHHHhhcCCCceEcc
Confidence 222 2 123446899999999999998874
No 289
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.0013 Score=50.37 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=46.5
Q ss_pred eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 109 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 109 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+.+++-......|.+++.|+|++..+++|+ ..+....++++.++.|||||++-+..+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHl-------------t~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHL-------------TYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 444444444567888999999999999998 4467788999999999999999987654
No 290
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.19 E-value=0.0035 Score=45.11 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCC
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLS 90 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s 90 (259)
+....+|+|||+|.+...|.+.|+ .-.|+|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456899999999999999999999 88999975
No 291
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.17 E-value=0.0028 Score=45.86 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=32.9
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.||+|+|..+--.+..+ .+++.+..+++.+.+.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn---------~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLN---------WGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEec---------CcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999997765433222 36678999999999999999999985
No 292
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.01 E-value=0.014 Score=50.38 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-CCCceeE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-SNDCFDV 128 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~fD~ 128 (259)
..++..++|.--|.|..+..+++..+. +++|+|-++.+++.+++++.... +++.++++++.++. . ....+|-
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~~~~~~dg 96 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELNGINKVDG 96 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHccCCCccCE
Confidence 346789999999999999999988555 99999999999999999887553 46999999887743 2 3357888
Q ss_pred EEec
Q 025039 129 VIEK 132 (259)
Q Consensus 129 V~~~ 132 (259)
|+..
T Consensus 97 iL~D 100 (310)
T PF01795_consen 97 ILFD 100 (310)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8753
No 293
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.00 E-value=0.01 Score=50.96 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCcchHHHHhcC--------------------CC-eEEEeeCCH--HHHHHHHHHHhhc------------
Q 025039 60 SSVLELGCGNSRLSEGLYNDG--------------------IT-AITCIDLSA--VAVEKMQERLLLK------------ 104 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~~--------------------~~-~v~~vD~s~--~~~~~a~~~~~~~------------ 104 (259)
.+||.||.|.|.-...++... .. .++.+|+.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987666665432 11 789999874 4455555444332
Q ss_pred -CC----CCeEEEEcccCCCcCCC-------CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039 105 -GY----KEVKVLEADMLDLPFSN-------DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172 (259)
Q Consensus 105 -~~----~~v~~~~~d~~~~~~~~-------~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 172 (259)
.. =++.|.+.|+..+..++ ...++|....+++.+|.. ....-.++|.++-..++||..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~----------s~~kTt~FLl~Lt~~~~~Gsl 237 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST----------SISKTTKFLLRLTDICPPGSL 237 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHhhcCCCcE
Confidence 00 13677888887754211 246777766666666543 456778999999999999999
Q ss_pred EEEEec
Q 025039 173 FISVSF 178 (259)
Q Consensus 173 l~~~~~ 178 (259)
|++++.
T Consensus 238 LLVvDS 243 (315)
T PF11312_consen 238 LLVVDS 243 (315)
T ss_pred EEEEcC
Confidence 999863
No 294
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.98 E-value=0.06 Score=47.36 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhc------------C----CC-eEEEeeCCHHHHHHHHHHHhhc-----CCCC--eEE
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYND------------G----IT-AITCIDLSAVAVEKMQERLLLK-----GYKE--VKV 111 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~------------~----~~-~v~~vD~s~~~~~~a~~~~~~~-----~~~~--v~~ 111 (259)
.+..-+|+|+||..|..++.+... + +. +|+.-|.=..=....-+.+... ..++ +..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 345578999999999988776552 1 11 6777774332222211111111 0123 344
Q ss_pred EEcccCCCcCCCCceeEEEecceeeeeeeCCC-------CCCCCC--------chh---------HHHHHHHHHHHHhcc
Q 025039 112 LEADMLDLPFSNDCFDVVIEKATMEVLFVNSG-------DPWNPQ--------PET---------VTKVMAMLEGVHRVL 167 (259)
Q Consensus 112 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~-------~~~~~~--------~~~---------~~~~~~~l~~~~~~L 167 (259)
+.+.+..--+|.++.|++++..++|.+-.-+. ..|++. +.. ..|...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 56777765578899999999999988743221 123321 111 234455666667789
Q ss_pred cCCcEEEEEecCCcc
Q 025039 168 KPDGLFISVSFGQPH 182 (259)
Q Consensus 168 kpgG~l~~~~~~~~~ 182 (259)
+|||++++..++.+.
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 999999998876654
No 295
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.94 E-value=0.12 Score=46.14 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCcchHHHHhc------------C---CC-eEEEeeCCHHHHHHHHHHHhh--------------cCCCC
Q 025039 59 NSSVLELGCGNSRLSEGLYND------------G---IT-AITCIDLSAVAVEKMQERLLL--------------KGYKE 108 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~------------~---~~-~v~~vD~s~~~~~~a~~~~~~--------------~~~~~ 108 (259)
..+|+|+|||+|.+++.+... + +. +|..-|.-..-....-+.+.. .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999887655331 1 12 566666432222211111110 11011
Q ss_pred --eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCC-------CCCCC--------ch--------hHHHHHHHHHHH
Q 025039 109 --VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGD-------PWNPQ--------PE--------TVTKVMAMLEGV 163 (259)
Q Consensus 109 --v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~~--------~~--------~~~~~~~~l~~~ 163 (259)
+..+.+.+..--+|.++.+++++...+|.+-.-+.. .|++. +. -..|...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222335555544778899999999888876322111 12210 00 012344566666
Q ss_pred HhcccCCcEEEEEecCCcc
Q 025039 164 HRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 164 ~~~LkpgG~l~~~~~~~~~ 182 (259)
++-|.|||++++...+.+.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHhccCcEEEEEEecCCC
Confidence 7789999999999877653
No 296
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.91 E-value=0.0062 Score=47.10 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-CcCCCCceeEEEecceee
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LPFSNDCFDVVIEKATME 136 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~fD~V~~~~~l~ 136 (259)
+++.+-+|+..=..-....+.|..++..+|.++--++.- +. ++ .++...|+.+ .....++||++.|..+++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~---~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE---FR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSIE 74 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc---cc----cccccccHHHHHHHHHHhhccchhhheechhc
Confidence 567888988876666666677877899999875221111 00 11 1222223321 112246899999988887
Q ss_pred eeee-CCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 137 VLFV-NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 137 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|.-. ..|+|..| ....+.+.++..+|||||.|++..+
T Consensus 75 h~GLGRYGDPidp-----~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 75 HFGLGRYGDPIDP-----IGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred cccccccCCCCCc-----cccHHHHHHHHHhhccCCeEEEEee
Confidence 7621 12333322 3335677889999999999999655
No 297
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.89 E-value=0.049 Score=46.57 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeEE
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVV 129 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V 129 (259)
.++...+|.--|.|..+..+++.++. +++++|-++.+++.|++++...+ +++.+++.++.++. ...+.+|-|
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi 100 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI 100 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence 46789999999999999999998764 79999999999999999988765 47999998876643 223467766
Q ss_pred Ee
Q 025039 130 IE 131 (259)
Q Consensus 130 ~~ 131 (259)
+.
T Consensus 101 L~ 102 (314)
T COG0275 101 LL 102 (314)
T ss_pred EE
Confidence 53
No 298
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.85 E-value=0.068 Score=45.13 Aligned_cols=102 Identities=21% Similarity=0.332 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC---CCceeEEEecc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKA 133 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~ 133 (259)
.|+.|+-+| -.-..+++++-.+.. ++..+|+++..++...+.+...|+.++..+..|+.+ |++ ...||+.+..+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCc
Confidence 467899999 444455555555544 999999999999999999999999889999999877 322 25799988644
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC---cEEEEEe
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD---GLFISVS 177 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~ 177 (259)
+ +.....+.++.+-...||.- |++.+..
T Consensus 230 p----------------eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 230 P----------------ETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred h----------------hhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 3 46677888888888888876 7777653
No 299
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.83 E-value=0.027 Score=49.66 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=59.2
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeC---CHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDL---SAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE 131 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 131 (259)
.++.+||-+|+|. |.++..+++. |. ++++++. ++...+.+++. |...+.....+..+.. ....+|+|+.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~----Ga~~v~~~~~~~~~~~-~~~~~d~vid 244 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL----GATYVNSSKTPVAEVK-LVGEFDLIIE 244 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc----CCEEecCCccchhhhh-hcCCCCEEEE
Confidence 4678999999987 7777777665 55 8999986 67766666542 3211111111111101 1246888875
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
... ....+....+.|++||.++++...
T Consensus 245 ~~g---------------------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 245 ATG---------------------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CcC---------------------CHHHHHHHHHHccCCcEEEEEecC
Confidence 321 123678888999999999887653
No 300
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.3 Score=40.71 Aligned_cols=105 Identities=25% Similarity=0.300 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC-Cc-CCCCceeE
Q 025039 58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD-LP-FSNDCFDV 128 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~-~~-~~~~~fD~ 128 (259)
.++..+|+|+|+..-+..|... +.. +++.+|+|...++...+.+.. .++. +.-+++|... +. .+..+--+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~-~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR-EYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH-hCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 5789999999998877766554 444 899999999887765544322 2233 4556677643 11 22222222
Q ss_pred -EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 129 -VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 129 -V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++...++..+ ++.....++..+...|+||-++++-
T Consensus 157 ~~flGStlGN~-------------tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNL-------------TPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCC-------------ChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3333444444 5577889999999999999999973
No 301
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.61 E-value=0.021 Score=49.56 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=52.2
Q ss_pred cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecce
Q 025039 61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT 134 (259)
Q Consensus 61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~ 134 (259)
+++|+.||.|.+...+.+.|...+.++|+++.+.+.-+.++. ....+|+.++. ++. .+|+++...+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEeccC
Confidence 689999999999999999998788999999999999888863 66788888764 333 5999886543
No 302
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.53 E-value=0.047 Score=47.98 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
+.++.+||-+|||. |.++..++++ |..+++++|.+++.++.+++ + + ..... + ++. ....+|+|+..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~--~~~~~--~--~~~-~~~g~d~viD~ 229 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D--ETYLI--D--DIP-EDLAVDHAFEC 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C--ceeeh--h--hhh-hccCCcEEEEC
Confidence 45789999999987 7776666653 33489999999988887764 1 2 11111 1 111 11248888842
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
..- ......+....++|++||.++++...
T Consensus 230 ~G~------------------~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 230 VGG------------------RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred CCC------------------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 110 00235678888999999999987653
No 303
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.51 E-value=0.0077 Score=51.19 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCCCcchH-HHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEe
Q 025039 58 PNSSVLELGCGNSRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIE 131 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~ 131 (259)
.+..|+|+=+|-|+++. .+..+|...|+++|.+|..++..+++++.+++.. ..++.+|-.. +.++...|-|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheee
Confidence 45789999999999999 8888888899999999999999999998886543 3445555444 334567777763
No 304
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.48 E-value=0.013 Score=49.55 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHH
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE 95 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~ 95 (259)
-.+++|||+|||+|...+.+...|...+...|++.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 368899999999999999998888558999999988773
No 305
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.27 E-value=0.025 Score=50.34 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=55.7
Q ss_pred hcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC
Q 025039 52 VQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD 118 (259)
Q Consensus 52 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~ 118 (259)
+....++|..|.|+.||-|-.++-++..+. +|++.|.++++++..+.+++.+.++. +.+..+|+.+
T Consensus 243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 243 LSGLFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred HhhccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 344667899999999999999999999986 99999999999999999998887643 6666666644
No 306
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=0.012 Score=53.38 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC----cCCCCceeEEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL----PFSNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~----~~~~~~fD~V~ 130 (259)
++.+|||.=|++|.-++..+...++ ++++.|.++.+++..+++++.++..+ +...+.|+..+ +-....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 5678999999999999988877444 89999999999999999999887655 55666666542 12235799976
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
..+ + ...-.+|+.+.+.++.||.|++..
T Consensus 189 LDP-y------------------Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LDP-Y------------------GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cCC-C------------------CCccHHHHHHHHHhhcCCEEEEEe
Confidence 321 1 223478999999999999999853
No 307
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.05 E-value=0.058 Score=46.67 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
.++.+||-+|||. |.++..+++. |...++++|.++..++.+... . ++ |..+. ....+|+|+....
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~--~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD--PRRDYRAIYDASG 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc--cCCCCCEEEECCC
Confidence 3567899999987 8887777765 554577889888777665432 1 01 11110 1246898885321
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
....++.+.+.|+++|+++++...
T Consensus 210 ---------------------~~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 210 ---------------------DPSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred ---------------------CHHHHHHHHHhhhcCcEEEEEeec
Confidence 124567788899999999987653
No 308
>PTZ00357 methyltransferase; Provisional
Probab=94.96 E-value=0.085 Score=49.98 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=62.3
Q ss_pred CcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHH-hhcCC--------CCeEEEEcccCCCcCC---
Q 025039 60 SSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERL-LLKGY--------KEVKVLEADMLDLPFS--- 122 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~-~~~~~--------~~v~~~~~d~~~~~~~--- 122 (259)
..|+.+|+|-|-+.....+. +.. ++++||-++..+.....+. ....+ ..|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999876655443 445 8999999966544444332 11122 1389999999886422
Q ss_pred --------CCceeEEEec--ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC----CcE
Q 025039 123 --------NDCFDVVIEK--ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP----DGL 172 (259)
Q Consensus 123 --------~~~fD~V~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 172 (259)
-+.+|+|++- ++| | +-+.-.+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSF-------G--------DNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSL-------G--------DNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhccc-------c--------cccCCHHHHHHHHHhhhhhcccccc
Confidence 1369999862 333 2 112335677777777765 665
No 309
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.94 E-value=0.26 Score=45.91 Aligned_cols=121 Identities=15% Similarity=0.278 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhc---CC--CeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCC-cC-CCCceeE
Q 025039 58 PNSSVLELGCGNSRLSEGLYND---GI--TAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL-PF-SNDCFDV 128 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~-~~-~~~~fD~ 128 (259)
+++.|.|+.||+|.+....... +. ..++|.+....+...++.++..++.. ......+|-..- .. ....||+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5578999999999988754331 21 26999999999999999886555432 223333443221 11 2356999
Q ss_pred EEecceeeeeee-C------CCCCCC-CC--chhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFV-N------SGDPWN-PQ--PETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~-~------~~~~~~-~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|++++++..... . ....++ -+ +.....-..++.....+|++||...++-.
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 999988754211 0 000010 00 11123345677888889999998766543
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.68 E-value=0.091 Score=48.68 Aligned_cols=100 Identities=21% Similarity=0.311 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-----------------
Q 025039 58 PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----------------- 118 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----------------- 118 (259)
++.+|+-+|||. |..+..++.. |. .|+++|.++..++.+++. +. .++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~l----Ga---~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSM----GA---EFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---eEEeccccccccccccceeecCHHHH
Confidence 568999999998 7777766655 65 799999999987777652 32 221212100
Q ss_pred ------CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 119 ------LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 119 ------~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
++..-..+|+|+....+. +.+.+.-+.++..+.+|||++++=+...+
T Consensus 235 ~~~~~~~~e~~~~~DIVI~Talip---------------G~~aP~Lit~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIP---------------GKPAPKLITEEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccC---------------CCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence 110124589998644221 11122336777889999999988655444
No 311
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.65 E-value=0.054 Score=48.12 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=61.2
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C-cCCCCceeEE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-PFSNDCFDVV 129 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~-~~~~~~fD~V 129 (259)
.+.++.+||-.|+|. |..+..+++. |..+|+++|.++..++.+++. +.+. +.....+..+ + ....+.+|+|
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 356788999999876 6677767665 543699999999988877653 3211 1111111111 1 0112368988
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.... ....+....+.|+++|.++++..
T Consensus 264 id~~G---------------------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMAG---------------------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECCC---------------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 84211 12456777889999999998654
No 312
>PRK11524 putative methyltransferase; Provisional
Probab=94.48 E-value=0.073 Score=45.68 Aligned_cols=69 Identities=16% Similarity=0.345 Sum_probs=44.4
Q ss_pred CeEEEEcccCCC--cCCCCceeEEEecceeeee--eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 108 EVKVLEADMLDL--PFSNDCFDVVIEKATMEVL--FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 108 ~v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+..++++|..+. .+++++||+|++++++..- +.+....|. ..+...-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 357788888773 3567899999999887431 111111121 01112234678999999999999999863
No 313
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.34 E-value=0.089 Score=44.30 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=34.9
Q ss_pred CCcEEEEcCCCCcchHHHHhcC----C----C-eEEEeeCCHHHHHHHHHHHhh
Q 025039 59 NSSVLELGCGNSRLSEGLYNDG----I----T-AITCIDLSAVAVEKMQERLLL 103 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~----~----~-~v~~vD~s~~~~~~a~~~~~~ 103 (259)
+.+|+|+|+|+|.++..+++.. + . +++.+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4799999999999998887741 1 1 799999999999888888765
No 314
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.32 E-value=0.22 Score=44.57 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=67.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc-cCC-C-cC-CCCceeE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLD-L-PF-SNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~-~-~~-~~~~fD~ 128 (259)
.+.++.+||..|||. |..+..+++.... ++++++.+++..+.+++.. +...+.....+ +.+ + .+ ....+|+
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 345788999999988 8888888777443 6999999999988887752 11111111111 111 1 11 2236898
Q ss_pred EEecceeeeeeeCCCCCCCCC----chhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQ----PETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+..-.-+.. ...|... +....+....+..+.+.|+|+|.++.+..
T Consensus 258 vld~vg~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAH----GSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCccc----ccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 8863211000 0000000 00012234578888999999999998753
No 315
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.28 E-value=0.049 Score=48.14 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=61.0
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C-c-CCCCceeE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-P-FSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~-~-~~~~~fD~ 128 (259)
.+.++.+||-.|||. |..+..+++. |..+++++|.++...+.+++. +.+. +.....+..+ + . .....+|+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 356789999999876 7777777765 443599999999888887542 3211 1111111111 0 0 12235898
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+.... . ...+....+.+++||.++++..
T Consensus 249 vid~~g-----------------~----~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVG-----------------R----PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCC-----------------C----HHHHHHHHHHhccCCEEEEECC
Confidence 874211 0 1356667789999999998754
No 316
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.25 E-value=0.53 Score=41.13 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=59.5
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.++++.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++. |.+. ++. ..+. ..+.+|+++..
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~----Ga~~--vi~--~~~~--~~~~~d~~i~~ 230 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL----GAAS--AGG--AYDT--PPEPLDAAILF 230 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh----CCce--ecc--cccc--CcccceEEEEC
Confidence 456789999999865 5566666655 55 799999998887777653 4322 111 1111 12357876532
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.. ....+....+.|++||.++++..
T Consensus 231 ~~---------------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 AP---------------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CC---------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 11 02467888899999999998765
No 317
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.10 E-value=0.54 Score=40.68 Aligned_cols=98 Identities=24% Similarity=0.366 Sum_probs=61.5
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCC-C-cCCCCceeEEE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLD-L-PFSNDCFDVVI 130 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~V~ 130 (259)
+.++.+||..|+|. |..+..+++. |. ++++++.++...+.+++. +.+.+-.... +... + ......+|+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKEL----GADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----CCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 56778999988764 7777777765 55 799999999888877542 3211111010 0000 0 12345689887
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.... ....+..+.+.|+++|.++.....
T Consensus 238 d~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 238 DFVG---------------------TQPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred ECCC---------------------CHHHHHHHHHHhhcCCEEEEECCC
Confidence 5311 124677888999999999987543
No 318
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.08 E-value=0.087 Score=45.93 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=50.3
Q ss_pred EEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecce
Q 025039 62 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKAT 134 (259)
Q Consensus 62 vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~ 134 (259)
|+|+.||.|.+...+.+.|..-+.++|+++.+++.-+.++. + .+..+|+.++.. .-..+|+++...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCC
Confidence 68999999999999999998567789999999998888763 2 334567766541 1235899887643
No 319
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.87 E-value=0.33 Score=40.73 Aligned_cols=108 Identities=21% Similarity=0.278 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCCcchHHHHh----cC-CC-eEEEeeC--------------------------CHHHHHHHHHHHhhcC
Q 025039 58 PNSSVLELGCGNSRLSEGLYN----DG-IT-AITCIDL--------------------------SAVAVEKMQERLLLKG 105 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~----~~-~~-~v~~vD~--------------------------s~~~~~~a~~~~~~~~ 105 (259)
-+..|+|+||-.|..++.++. .+ .. +++++|. ....++..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357899999999987765433 22 22 7888881 1124666777777666
Q ss_pred C--CCeEEEEcccCC-Cc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039 106 Y--KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 106 ~--~~v~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 181 (259)
+ +++.++.+.+.+ ++ .+.+.+-++. ++. +--+.....|+.+...|.|||++++-+++.+
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~----lD~-------------DlYesT~~aLe~lyprl~~GGiIi~DDY~~~ 216 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLH----LDC-------------DLYESTKDALEFLYPRLSPGGIIIFDDYGHP 216 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEE----E----------------SHHHHHHHHHHHGGGEEEEEEEEESSTTTH
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEE----Eec-------------cchHHHHHHHHHHHhhcCCCeEEEEeCCCCh
Confidence 4 358999988754 33 2223333332 211 1225567899999999999999999888764
Q ss_pred c
Q 025039 182 H 182 (259)
Q Consensus 182 ~ 182 (259)
.
T Consensus 217 g 217 (248)
T PF05711_consen 217 G 217 (248)
T ss_dssp H
T ss_pred H
Confidence 3
No 320
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.75 E-value=0.19 Score=45.76 Aligned_cols=115 Identities=23% Similarity=0.213 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----Cc---CCCCceeEE
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LP---FSNDCFDVV 129 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~---~~~~~fD~V 129 (259)
.+..+|-+|-|.|.+...+...-+. .+++++++|.+++.+.+.+....-....+...|..+ .. -.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 4678999999999999888776554 999999999999999987644321122333333322 11 245679998
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.. .--.+.+... -|...-..+.++..++..|.|.|.+++-..
T Consensus 375 ~~d----vds~d~~g~~--~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 375 MVD----VDSKDSHGMQ--CPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EEE----CCCCCcccCc--CCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 732 1101100001 112334557889999999999999998543
No 321
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.66 E-value=0.12 Score=38.23 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----C-c-CCCCceeEEEecceeeeeeeCC
Q 025039 69 NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----L-P-FSNDCFDVVIEKATMEVLFVNS 142 (259)
Q Consensus 69 ~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~-~-~~~~~fD~V~~~~~l~~~~~~~ 142 (259)
.|..+..+++....+++++|.++..++.+++. |. -.++..+-.+ + . .....+|+|+....
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------- 67 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------- 67 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS--------
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc--cccccccccccccccccccccccceEEEEecC--------
Confidence 46677777766335999999999988888764 31 1222221111 1 1 23357999985321
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
....++...++|+|+|.++++....
T Consensus 68 -------------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 -------------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1367888999999999999987654
No 322
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.57 E-value=0.89 Score=35.59 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=66.8
Q ss_pred hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHh-cCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC---Cc
Q 025039 46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYN-DGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LP 120 (259)
Q Consensus 46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~ 120 (259)
..+...+.....+..+|+-+||=+-.. .+.+ .... +++.+|++.. +...+ ++ .+..-|... ++
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~R--------F~~~~-~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRR--------FEQFG-GD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecch--------HHhcC-Cc-ceEECCCCChhhhh
Confidence 345555555555678999999876333 3333 2233 8999999964 33322 12 344445443 22
Q ss_pred --CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 121 --FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 121 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+ .++||+|++.+++ + ..+-...+...+..++++++.+++++..
T Consensus 81 ~~l-~~~~d~vv~DPPF--l-------------~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 81 EEL-KGKFDVVVIDPPF--L-------------SEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred hhc-CCCceEEEECCCC--C-------------CHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 2 4689999998887 2 3345556677777788999999987643
No 323
>PRK13699 putative methylase; Provisional
Probab=93.52 E-value=0.15 Score=42.26 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=41.5
Q ss_pred EEEEcccCCC--cCCCCceeEEEecceeeeeeeCC-CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 110 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNS-GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 110 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
++.++|..++ .++++++|+|+..+++..-+... +..+. .....+-....+.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~-~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIA-GDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccc-cccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5667777663 46789999999988874211110 00000 0011123467889999999999998864
No 324
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.51 E-value=0.11 Score=44.24 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=59.6
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C-c-CCCCceeEEEe
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-P-FSNDCFDVVIE 131 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~-~~~~~fD~V~~ 131 (259)
.++.+||-+|+|+ |..+..+++. |..+++++|.+++.++.+++. +.+.+ +...+..+ . . .....+|+|+.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATAL-AEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEe-cCchhhHHHHHHHhCCCCCCEEEE
Confidence 3678999999876 7777766665 553599999998888777653 32111 10011100 0 0 12235888874
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
... ....+..+.+.|+|+|.++++..
T Consensus 194 ~~G---------------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 194 FSG---------------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCC---------------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 211 12467778889999999998764
No 325
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.50 E-value=0.43 Score=41.68 Aligned_cols=102 Identities=13% Similarity=0.235 Sum_probs=66.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc----ccCC--CcCCCCce
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA----DMLD--LPFSNDCF 126 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~--~~~~~~~f 126 (259)
.++++.+|.-+|||. |..++.-+.. |..+++++|+++..++.|++. |. ..++.. |+.+ ....++..
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GA--T~~vn~~~~~~vv~~i~~~T~gG~ 255 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GA--THFVNPKEVDDVVEAIVELTDGGA 255 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CC--ceeecchhhhhHHHHHHHhcCCCC
Confidence 456889999999997 7777666655 555999999999999999875 22 233322 1211 01223356
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
|.++- .. ...+.++.....+.++|..+++....+..
T Consensus 256 d~~~e-----~~----------------G~~~~~~~al~~~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 256 DYAFE-----CV----------------GNVEVMRQALEATHRGGTSVIIGVAGAGQ 291 (366)
T ss_pred CEEEE-----cc----------------CCHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 66542 11 11246777777788899999987765543
No 326
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.50 E-value=0.2 Score=43.92 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecce
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT 134 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~ 134 (259)
..+++|+.||.|.+...+...|+.-+.++|+++.+++.-+.++.. ..++..|+.... +....+|+++...+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence 357999999999999999999987788999999999988887642 345566665533 11117899997654
No 327
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.38 E-value=0.13 Score=45.08 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=59.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC--cCCCCcee-E
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL--PFSNDCFD-V 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~~~~~fD-~ 128 (259)
.+.++.+||-.|||. |..+..+++. |...+++++.+++..+.+++. +... +.....+...+ ......+| +
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 345788999999876 6666666665 543478999999887776542 3211 11111110000 01223577 5
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
|+.. . .....+....+.|++||.++++...
T Consensus 233 v~d~-----~----------------G~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 233 ILET-----A----------------GVPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred EEEC-----C----------------CCHHHHHHHHHHhhcCCEEEEEccC
Confidence 5531 1 1124677888999999999987643
No 328
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.30 E-value=0.42 Score=38.32 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-------CCCCc
Q 025039 58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDC 125 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 125 (259)
++..|+|+|.--|..+++.+.. |.. +|+++|++-..++.+... .+++.+++++-.+.. .+.+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 5678999999999888877664 633 999999997665544332 368999999877632 12222
Q ss_pred eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
--+.+| ++.- ++.+..-.-++-..++|..|.++++.+-
T Consensus 144 ~kIfvi---lDsd------------Hs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 144 PKIFVI---LDSD------------HSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred CcEEEE---ecCC------------chHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 223233 2111 2345666777888889999999988653
No 329
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.17 E-value=0.21 Score=45.19 Aligned_cols=89 Identities=11% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
.++.+|+-+|||. |.....+++. |. +|+.+|.++...+.|+.. |+ ... +..+. . ..+|+|+....
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G~---~~~--~~~e~-v--~~aDVVI~atG 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----GY---EVM--TMEEA-V--KEGDIFVTTTG 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----CC---EEc--cHHHH-H--cCCCEEEECCC
Confidence 4689999999998 7766655554 66 899999999877776542 32 221 11111 1 24798885311
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHH-HHhcccCCcEEEEEecC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEG-VHRVLKPDGLFISVSFG 179 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~ 179 (259)
...++.. ..+.+++||+++.+...
T Consensus 267 ---------------------~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 ---------------------NKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---------------------CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1234444 48899999999887644
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.06 E-value=0.2 Score=43.68 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=59.3
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-CCCCceeEEE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-FSNDCFDVVI 130 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-~~~~~fD~V~ 130 (259)
+.++.+||-.|+|. |..+..+++. |..++++++.+++..+.+++. +.+. +.....+...+ . .....+|+|+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEE
Confidence 45788999998875 6666666655 552499999999888777543 3211 11111110011 0 1223689988
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.... ....+....+.|+++|.++++..
T Consensus 237 d~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 237 ECSG---------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ECCC---------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 4211 12355677788999999998754
No 331
>PLN02827 Alcohol dehydrogenase-like
Probab=92.94 E-value=0.2 Score=44.70 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE--cccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLE--ADMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|+|. |..+..+++. |...++++|.++...+.+++. |.+. +.... .++.+ + ....+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 356789999999876 7777666665 553688999998877777542 3321 11111 01111 0 01123688
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 178 (259)
+|+.... ....+....+.+++| |.++++..
T Consensus 266 ~vid~~G---------------------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 266 YSFECVG---------------------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred EEEECCC---------------------ChHHHHHHHHhhccCCCEEEEECC
Confidence 8874211 113566778889998 99987654
No 332
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.91 E-value=0.82 Score=36.41 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=63.1
Q ss_pred cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C----------CCCeEEEEcccCCCcC
Q 025039 61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLPF 121 (259)
Q Consensus 61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~~~ 121 (259)
+|.-+|+|+ | .++..++..|. +|+.+|.+++.++.+++++... + ..++++ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467889988 5 45666677787 9999999999999988766541 1 112332 2333322
Q ss_pred CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
...|+|+-.- ++..+..++++.++.+++.|+.+|...+.+.
T Consensus 77 --~~adlViEai----------------~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 --VDADLVIEAI----------------PEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --CTESEEEE-S-----------------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --hhhheehhhc----------------cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 2578877422 2566788899999999999999988766543
No 333
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.81 E-value=0.45 Score=41.09 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 58 PNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
++.+|.-+|.|. |..+..++--...+|+.+|+|...+.....-+. .++.....+...+...-...|+++..-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~----~rv~~~~st~~~iee~v~~aDlvIgaVLI- 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG----GRVHTLYSTPSNIEEAVKKADLVIGAVLI- 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----ceeEEEEcCHHHHHHHhhhccEEEEEEEe-
Confidence 356888999997 887777766544499999999988888776653 24555555444433222468988753222
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
.....+.-..++..+.||||++++=+...+...
T Consensus 242 --------------pgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc 274 (371)
T COG0686 242 --------------PGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGC 274 (371)
T ss_pred --------------cCCCCceehhHHHHHhcCCCcEEEEEEEcCCCc
Confidence 122344567788899999999999766655443
No 334
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=0.35 Score=42.54 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcC---------CCeEEEeeCCHHHHHHHHHHHhhc
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDG---------ITAITCIDLSAVAVEKMQERLLLK 104 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~ 104 (259)
.+..++|+|+|.|.++..+++.. ..++..+|+|++..+.=+++++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 35689999999999988877642 228999999999988887777644
No 335
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.44 E-value=0.76 Score=36.14 Aligned_cols=114 Identities=19% Similarity=0.130 Sum_probs=60.3
Q ss_pred EcCCCCcchHHHHhcCC-C-eEEEeeCC--HHHHHHHH---HHHhhcCCCCeEEE-EcccCCCc----CCCCceeEEEec
Q 025039 65 LGCGNSRLSEGLYNDGI-T-AITCIDLS--AVAVEKMQ---ERLLLKGYKEVKVL-EADMLDLP----FSNDCFDVVIEK 132 (259)
Q Consensus 65 iGcG~G~~~~~l~~~~~-~-~v~~vD~s--~~~~~~a~---~~~~~~~~~~v~~~-~~d~~~~~----~~~~~fD~V~~~ 132 (259)
+|=|.-.++..|++... . .+++.-+. ++..+.-. .++....-.++.+. ..|+.++. .....||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 55556566777777632 3 56555443 43333322 33333322234443 34666654 245789999966
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.+---.....+. ..-..+..-+..++..+.++|+++|.+.+.-...
T Consensus 83 FPH~G~~~~~~~--~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 83 FPHVGGGSEDGK--RNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCCCCCCccchh--HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 442110000000 0001133456778999999999999999875543
No 336
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.26 E-value=0.51 Score=39.14 Aligned_cols=95 Identities=28% Similarity=0.331 Sum_probs=58.5
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCCCceeEEE
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVI 130 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~ 130 (259)
.++.+||..|+|. |..+..+++....++++++.++...+.+++. +... ++...-... ......+|+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~--~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GADH--VIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCce--eccCCcCCHHHHHHHhcCCCCCEEE
Confidence 5788999999986 6666666654334899999998877776543 2111 111100000 11235689988
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
....- ...+..+.+.|+++|.++....
T Consensus 207 ~~~~~---------------------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVGG---------------------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCCC---------------------HHHHHHHHHhcccCCEEEEEcc
Confidence 53210 1356777888999999997654
No 337
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.23 E-value=0.45 Score=43.73 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 119 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 119 (259)
..+++|+.||.|.+...+...|...+.++|+++.+.+.-+.++... +....+.+|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhC
Confidence 4589999999999999999888867789999999888877775211 1233445555554
No 338
>PLN02740 Alcohol dehydrogenase-like
Probab=92.14 E-value=0.56 Score=41.85 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=60.9
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE--cccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLE--ADMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-+|||. |..+..+++. |..+|+++|.+++.++.+++. |.+. +.... .++.+ + ....+.+|
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GITDFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCcEEEecccccchHHHHHHHHhCCCCC
Confidence 456789999999876 7777777765 443699999999888888652 3321 11111 01111 0 11122689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 178 (259)
+|+.... ....+......+++| |.++++..
T Consensus 271 vvid~~G---------------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECAG---------------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECCC---------------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 8885321 124566777788886 99887654
No 339
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.13 E-value=3.6 Score=30.16 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=57.3
Q ss_pred CcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCceeEEEecceeee
Q 025039 60 SSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEV 137 (259)
Q Consensus 60 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~ 137 (259)
++|.|+|-|- =..+..|++.|. .++++|+++. +.. ..+.+..-|+++.... =...|+|++..
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~iY~~A~lIYSiR---- 78 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP----EGLRFVVDDITNPNISIYEGADLIYSIR---- 78 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc----ccceEEEccCCCccHHHhhCccceeecC----
Confidence 4999999997 457778888898 8999999986 111 2478888888874321 13578888732
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+..+++..+-.+.+.++ -.+++.
T Consensus 79 --------------pppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 79 --------------PPPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred --------------CCHHHHHHHHHHHHhhC--CCEEEE
Confidence 33566666666666654 344444
No 340
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.02 E-value=0.76 Score=40.51 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=61.0
Q ss_pred cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc-ccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA-DMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~-d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++.+ |.+. +..... +..+ + ....+.+|
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCcE
Confidence 3567899999998 4 37777777776 55 8999999988777765332 3222 111111 1111 0 01123689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|+... . ...+....+.|+++|.++++..
T Consensus 231 ~v~d~v--------------------G--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 231 IYFDNV--------------------G--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EEEECC--------------------C--HHHHHHHHHHhccCCEEEEECc
Confidence 887421 1 1366788899999999998754
No 341
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.84 E-value=0.81 Score=39.62 Aligned_cols=99 Identities=16% Similarity=0.268 Sum_probs=61.7
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCC-C-----cCCCCc
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLD-L-----PFSNDC 125 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~-~-----~~~~~~ 125 (259)
.+.++.+|.-+|+|. |.....-++. |..+++|+|++++-.+.|++. |. .+++. .|..+ + ...++.
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----Ga--Te~iNp~d~~~~i~evi~EmTdgG 262 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GA--TEFINPKDLKKPIQEVIIEMTDGG 262 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Cc--ceecChhhccccHHHHHHHHhcCC
Confidence 356788999999988 5544444444 666999999999999998875 32 22221 13322 0 123456
Q ss_pred eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecCC
Q 025039 126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFGQ 180 (259)
Q Consensus 126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~ 180 (259)
+|.-+- .. ...+++.++....+.| |.-+++...+
T Consensus 263 vDysfE-----c~----------------G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 263 VDYSFE-----CI----------------GNVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred ceEEEE-----ec----------------CCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 676551 11 1135666677777788 8888876544
No 342
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.83 E-value=3.1 Score=35.22 Aligned_cols=106 Identities=14% Similarity=0.074 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCC-HHHHHHHHHHHhhcCC---CCeEEEEcccCC-C-------cCCCCce
Q 025039 59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGY---KEVKVLEADMLD-L-------PFSNDCF 126 (259)
Q Consensus 59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~---~~v~~~~~d~~~-~-------~~~~~~f 126 (259)
...|+.+|||-=.-...+.. .. .+..+|++ |++++.-++.+...+. .+.+++..|+.+ + .+.....
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 35799999997555544422 22 34444444 5566666666664332 346777778752 1 0112234
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
-++++-+++.++ +.+...++++.+.+...||+.+++-..+
T Consensus 160 tl~i~EGvl~YL-------------~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 160 TAWLWEGLLMYL-------------TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeeecchhhcC-------------CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 467778888777 5678889999999998899988875443
No 343
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=91.73 E-value=0.68 Score=41.78 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCCCCcEEEEc-CCC-CcchHHHHhc---CCCeEEEeeCCHHHHHHHHHH
Q 025039 56 IKPNSSVLELG-CGN-SRLSEGLYND---GITAITCIDLSAVAVEKMQER 100 (259)
Q Consensus 56 ~~~~~~vLDiG-cG~-G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~ 100 (259)
+.++.+||-+| +|. |..+..+++. |..+++++|.++..++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45678999997 465 8888877776 333799999999999988875
No 344
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.46 E-value=0.42 Score=42.34 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCCCcCCCCceeEEEec
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~ 132 (259)
+.++.+||-.|+|. |..+..+++. |. ++++++.++.....+.+ ..|.+ .++. .+...+....+.+|+|+..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~---~~Ga~--~vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN---RLGAD--SFLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH---hCCCc--EEEcCCCHHHHHhhcCCCCEEEEC
Confidence 35688999999987 7777777765 54 78888877654332222 22321 1111 1100111001247888742
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.. ....+....+.|++||.++.+..
T Consensus 255 ~g---------------------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 255 VS---------------------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CC---------------------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 11 12356778889999999998754
No 345
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.39 E-value=0.5 Score=41.55 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=34.7
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHH
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE 99 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~ 99 (259)
.+.++.+||-.|||. |..+..+++. |. +++++|.+++.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 356789999999976 7777767665 55 89999999988887754
No 346
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.28 E-value=0.47 Score=42.47 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCCeEEEEcccCCCc--CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 106 YKEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 106 ~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
.+++++.++++.+.- .+++++|.++.....+.+ +.+...+.++++.+.++|||++++-+...+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-------------~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-------------DPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-------------CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 357899988887632 457899999987777766 5588899999999999999999997766544
No 347
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.17 E-value=1 Score=39.45 Aligned_cols=99 Identities=22% Similarity=0.296 Sum_probs=60.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-C-c-CCCCceeE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-P-FSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~-~~~~~fD~ 128 (259)
.++++.+||-.|+|. |..+..+++. |...++++|.+++..+.+++. +.+.+ .....+..+ + . .....+|+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 356788999998875 6666666665 443699999998877777642 32111 111111100 0 1 12346898
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+.... ....+..+.++|+++|.++.+..
T Consensus 239 vld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 239 VIIAGG---------------------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred EEECCC---------------------CHHHHHHHHHHhhcCCEEEEecc
Confidence 884211 02467788889999999987643
No 348
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.15 E-value=3 Score=30.06 Aligned_cols=89 Identities=21% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCCCcchHHHHhc---CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEecceeeeee
Q 025039 67 CGNSRLSEGLYND---GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKATMEVLF 139 (259)
Q Consensus 67 cG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~~ 139 (259)
||.|..+..+++. +..+++.+|.+++.++.+++. .+.++.+|..+.. ..-...+.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC-----
Confidence 4445555555443 222899999999998888764 3678899988732 23356887775321
Q ss_pred eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.......+....+.+.|...++......
T Consensus 72 -------------~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 -------------DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp -------------SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred -------------CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 1233344455556777888887765443
No 349
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.02 E-value=1 Score=38.56 Aligned_cols=90 Identities=23% Similarity=0.193 Sum_probs=60.0
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCCCcCCCCceeEEEeccee
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.+|+-+|.|- |.++..+.+.|.. .+++.|.+...++.+.+. + +.... .+... ......|+|+..-++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----g---v~d~~~~~~~~--~~~~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----G---VIDELTVAGLA--EAAAEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----C---cccccccchhh--hhcccCCEEEEeccH
Confidence 4688888886 6777788888886 689999998877776643 2 21111 11111 123457998864433
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
....++++++...|++|..+.=+
T Consensus 75 ------------------~~~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 75 ------------------EATEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred ------------------HHHHHHHHHhcccCCCCCEEEec
Confidence 56678899999899888877633
No 350
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.99 E-value=2.3 Score=36.87 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=60.1
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHH--HhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER--LLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.+|+-+|||. |.++..|++.|. .|+.++-+++.++..++. +................. +...+.+|+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~v-- 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLAC-- 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEEEEC--
Confidence 4799999997 567777887777 899999887666666542 111000010010100001 11224689887421
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
...+..++++.+...+.++..++..-.+
T Consensus 79 ----------------K~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 79 ----------------KAYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred ----------------CHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 2235668889999999999988876444
No 351
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.92 E-value=0.83 Score=40.53 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=60.8
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE--cccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLE--ADMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|||. |..+..+++. |..+|+++|.+++.++.+++. +.+. +.... .++.+ + ....+.+|
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCCCCC
Confidence 456789999999876 7777777766 443799999999988888653 3211 11110 01101 0 01123588
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 178 (259)
+|+.... ....+....+.++++ |.++++..
T Consensus 258 ~vid~~G---------------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 258 YSFECIG---------------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEECCC---------------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 8874211 124567777888886 99988764
No 352
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.76 E-value=1.3 Score=38.53 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=57.6
Q ss_pred CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCCCcCCCCceeEEEec
Q 025039 58 PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~~~~fD~V~~~ 132 (259)
++.+||..|||. |..+..+++. |..++++++.++...+.+++. +.+. ++.. +..........+|+++..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~~--vi~~~~~~~~~~~~~~~~vd~vld~ 238 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GADE--TVNLARDPLAAYAADKGDFDVVFEA 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCCE--EEcCCchhhhhhhccCCCccEEEEC
Confidence 678899988875 6666666665 543789999988877755442 2211 1111 111111122358998853
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
... ...++.+.+.|+++|.++.+..
T Consensus 239 ~g~---------------------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 239 SGA---------------------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred CCC---------------------HHHHHHHHHHHhcCCEEEEEec
Confidence 210 1356778899999999997653
No 353
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.72 E-value=0.74 Score=39.42 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=48.4
Q ss_pred HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039 47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK 104 (259)
Q Consensus 47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 104 (259)
.+.+.+.....++..|||.-+|+|..+......+- .++|+|+++.-++.+.+++...
T Consensus 211 l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 211 LIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 34455555667899999999999999999888887 8999999999999999988643
No 354
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.63 E-value=1.2 Score=39.98 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=63.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCC-Cc--CCCCce
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLD-LP--FSNDCF 126 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~~--~~~~~f 126 (259)
.+.++.+||-.|+|. |..+..+++. |...++.+|.++..++.+++. |.. .+... +..+ +. .....+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~--~v~~~~~~~~~~~v~~~~~~~g~ 255 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE--TVDLSKDATLPEQIEQILGEPEV 255 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe--EEecCCcccHHHHHHHHcCCCCC
Confidence 356788888888876 7777666665 553566778888888887763 331 12111 1111 10 122358
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
|+++........ +.++. ....+....++...+++++||.++++...
T Consensus 256 Dvvid~~G~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 256 DCAVDCVGFEAR----GHGHD---GKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred cEEEECCCCccc----ccccc---ccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 988853211000 00000 00112235788888999999999997654
No 355
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.59 E-value=1.2 Score=38.15 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=58.1
Q ss_pred cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc---C-----C---------CCeEEEEcccCCCcC
Q 025039 61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK---G-----Y---------KEVKVLEADMLDLPF 121 (259)
Q Consensus 61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~-----~---------~~v~~~~~d~~~~~~ 121 (259)
+|.-+|+|. +.++..+++.|. +|+.+|.+++.++.+.++.... + + .++++ ..+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH---
Confidence 588899986 346666777787 8999999999999887643211 0 0 01111 112211
Q ss_pred CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.-...|+|+..-+ +.......++.++.+.++|+.++...
T Consensus 78 ~~~~aD~Vi~avp----------------e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 78 AVADADLVIEAVP----------------EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred hhcCCCEEEEecc----------------CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 1134688874321 23344567788888889888766543
No 356
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.49 E-value=1.7 Score=37.26 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=63.0
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------CC----------CCeEEEEcccCCCc
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GY----------KEVKVLEADMLDLP 120 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~~ 120 (259)
.+|--+|+|+ +.++..++..|. +|+..|.+++.++.+++++... +. .++++ ..|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH--
Confidence 4788999997 456667777888 8999999999999877654321 11 01111 122211
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc-cCCcEEEEEecC
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVSFG 179 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~ 179 (259)
-...|+|+-.- +++.+....++..+.+.+ +|+.++...+.+
T Consensus 82 --~~~~d~ViEav----------------~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 --FADRQLVIEAV----------------VEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred --hCCCCEEEEec----------------ccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 13468877431 145566778888888888 778777655444
No 357
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.30 E-value=1.7 Score=37.60 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=59.7
Q ss_pred cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc-ccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++ .|.+.+ ..... +..+ . ....+.+|
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeE
Confidence 3567889999985 3 37777777776 55 89999999887777754 243221 11111 1111 0 11224689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|+... . ...+..+.+.|+++|.++.+..
T Consensus 210 vv~d~~--------------------G--~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 210 CYFDNV--------------------G--GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred EEEECC--------------------C--HHHHHHHHHHhCcCcEEEEecc
Confidence 888421 1 1245778899999999997643
No 358
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.97 E-value=1.1 Score=39.75 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=59.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc--ccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA--DMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~--d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|+|. |..+..+++. |..+|++++.++...+.+++. +.+.+ ..... ++.+ + ......+|
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhCCCCC
Confidence 356789999998865 6666666665 443799999998888877542 32221 11110 0000 0 01124689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 178 (259)
+|+.... ....+..+.+.|+++ |.++.+..
T Consensus 257 ~vid~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 257 YSFECTG---------------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEEECCC---------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 8884211 024667788889885 99988754
No 359
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.85 E-value=0.79 Score=40.63 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=60.8
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc--ccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~-~~~~~~fD 127 (259)
.++++.+||-.|+|. |..+..+++. |..+++++|.+++.++.+++. +.+. +..... ++.+ + ....+.+|
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GATDCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCEEEcccccchHHHHHHHHHhCCCCc
Confidence 356789999999876 6676666665 443699999999888877542 3221 111111 1111 0 01123689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecC
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG 179 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 179 (259)
+|+.... ....+..+.+.++++ |.++.+...
T Consensus 259 ~vid~~g---------------------~~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 259 YTFECIG---------------------NVKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred EEEECCC---------------------ChHHHHHHHHhhccCCCeEEEEccC
Confidence 8885211 024667778889887 999887543
No 360
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.78 E-value=2.2 Score=38.89 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCcch--HHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc-CCCCeEEEEcccCC--CcC-CCCceeEEE
Q 025039 58 PNSSVLELGCGNSRLS--EGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLD--LPF-SNDCFDVVI 130 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~--~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~--~~~-~~~~fD~V~ 130 (259)
.+..++|+|.|.|.-. ...+..+-. .++.||.+..|.......+..- ....+.+....+.. ++. ....||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4567889998876543 333333423 7999999999999888776540 00011111101111 232 234699999
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHH-HhcccCCcEEEEEecCCc
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV-HRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~LkpgG~l~~~~~~~~ 181 (259)
+...++.+. .........++. .+..++|+.+++++.+.+
T Consensus 280 ~ah~l~~~~------------s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELG------------SKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccC------------CchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 988887662 222334444444 456788999999876654
No 361
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.74 E-value=2.5 Score=36.22 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=58.4
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc--------CC----------CCeEEEEcccCCC
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK--------GY----------KEVKVLEADMLDL 119 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~v~~~~~d~~~~ 119 (259)
.+|.-+|+|. +.++..++..|. +|+.+|.+++.++.+++++... .+ .++++ ..|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 4688899997 345556666777 8999999999988887653211 00 11221 1222211
Q ss_pred cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
-...|+|+..-+ +..+....+++++...++++.++..
T Consensus 82 ---~~~aDlVieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ---VKDADLVIEAVP----------------EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ---hcCCCEEEEecc----------------CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 134688875321 2334567888889888887776544
No 362
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.59 E-value=1.5 Score=36.90 Aligned_cols=96 Identities=23% Similarity=0.245 Sum_probs=58.2
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.+.++.+||-.|||. |..+..+++. |..++++++.+++..+.+++. +..+ .+... .........+|+|+..
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~-~~~~~--~~~~~~~~~~d~vl~~ 166 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPAD-PVAAD--TADEIGGRGADVVIEA 166 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCc-ccccc--chhhhcCCCCCEEEEc
Confidence 456788999998876 6666666665 542399999998887766653 2001 11110 0001123468988852
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
... ...+....+.|+++|.++.+..
T Consensus 167 ~~~---------------------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 167 SGS---------------------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred cCC---------------------hHHHHHHHHHhcCCcEEEEEec
Confidence 110 1356778889999999987643
No 363
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.57 E-value=1.8 Score=37.84 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=60.8
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cCCC------CeEEEEcccCCCcCCCC
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KGYK------EVKVLEADMLDLPFSND 124 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~------~v~~~~~d~~~~~~~~~ 124 (259)
.+|--+|+|+ ..++..++..|. +|+..|.+++.++.++..+.. .+.. ++++. .++.+ .-.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CVA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hhc
Confidence 5799999996 456666777888 999999999988876654321 1110 11111 11111 113
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
..|+|+-.- |+..+-...++.++.+.++|+.++...
T Consensus 83 ~aDlViEav----------------pE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 83 DADFIQESA----------------PEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred CCCEEEECC----------------cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 468877532 145567788999999999998854443
No 364
>PRK10083 putative oxidoreductase; Provisional
Probab=89.57 E-value=0.99 Score=39.24 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=59.1
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHh-c-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-CcCCCCceeEE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYN-D-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-LPFSNDCFDVV 129 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~fD~V 129 (259)
.+.++.+||-.|+|. |..+..+++ . |...+++++.+++..+.+++. |.+.+ .....++.+ +.-....+|+|
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~v 232 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIKPTLI 232 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCCCCEE
Confidence 355788999999775 666666776 3 764688899988887777653 32111 111111111 11011234566
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+.... ....+....+.|+++|.++.+...
T Consensus 233 id~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 233 IDAAC---------------------HPSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred EECCC---------------------CHHHHHHHHHHhhcCCEEEEEccC
Confidence 64210 023577788899999999987543
No 365
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=89.37 E-value=0.85 Score=39.47 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=48.6
Q ss_pred EEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC------C-cCCCCceeEEEecc
Q 025039 63 LELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD------L-PFSNDCFDVVIEKA 133 (259)
Q Consensus 63 LDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~------~-~~~~~~fD~V~~~~ 133 (259)
+|||.|..-+--.+...-.+ ...++|++...++.|.+++..++... +.+++....+ . ..++..||++.|++
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence 68877764333333222222 78999999999999999999888754 5555443222 0 12245699999998
Q ss_pred eee
Q 025039 134 TME 136 (259)
Q Consensus 134 ~l~ 136 (259)
+|.
T Consensus 187 PFf 189 (419)
T KOG2912|consen 187 PFF 189 (419)
T ss_pred chh
Confidence 874
No 366
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.32 E-value=4.2 Score=34.84 Aligned_cols=96 Identities=24% Similarity=0.263 Sum_probs=59.9
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------CC----------CCeEEEEcccCCCc
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GY----------KEVKVLEADMLDLP 120 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~~ 120 (259)
.+|.-+|+|. +.++..++..|. +|+..|.+++.++.+.+.+... +. .++++ ..+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 4688899997 356667777787 8999999999988765433211 10 11222 122211
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
-...|+|+..-+ +.......+++.+...++|+.+++..+
T Consensus 81 --~~~aD~Vieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 81 --LADCDLVIEAAT----------------EDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred --hcCCCEEEEcCc----------------CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 135788875321 233445678888999999988776433
No 367
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=89.06 E-value=1.2 Score=39.23 Aligned_cols=96 Identities=23% Similarity=0.295 Sum_probs=55.4
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
.++.+||-.|+|. |..+..+++. |. ++++++.+++..+.+.+. .|.+. .+...+...+......+|+|+....
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~---~Ga~~-~i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEH---LGADD-YLVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh---cCCcE-EecCCChHHHHHhcCCCcEEEECCC
Confidence 4678899888876 7777767665 54 788888887655554433 23311 1111111111101124788774211
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
....+..+.+.|+++|.++.+..
T Consensus 254 ---------------------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ---------------------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---------------------chHHHHHHHHHhccCCEEEEECC
Confidence 01356677789999999998754
No 368
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.92 E-value=2.1 Score=36.51 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=53.7
Q ss_pred cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039 61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 138 (259)
Q Consensus 61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 138 (259)
+|.-+|+|. |.++..+.+.|. +|+++|.+++.++.+.+. +. +.....+. + . -...|+|+..-+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~-~-~--~~~aDlVilavp---- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL--VDEASTDL-S-L--LKDCDLVILALP---- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC--cccccCCH-h-H--hcCCCEEEEcCC----
Confidence 477789887 557777777777 899999999888777653 21 11111111 1 1 135788885432
Q ss_pred eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
.....++++++...++++.++.
T Consensus 67 --------------~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 67 --------------IGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred --------------HHHHHHHHHHHHHhCCCCcEEE
Confidence 2345567888888888775443
No 369
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.86 E-value=3.6 Score=35.08 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=60.4
Q ss_pred cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH-------hhcCC-C---------CeEEEEcccCCCcC
Q 025039 61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERL-------LLKGY-K---------EVKVLEADMLDLPF 121 (259)
Q Consensus 61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~-~---------~v~~~~~d~~~~~~ 121 (259)
+|.-+|+|. +.++..++..|. +|+++|.+++.++.+++++ ...+. . ++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 588899996 567777777887 8999999999987665322 22220 0 1121 122211
Q ss_pred CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
-...|+|+..-. +......+++.++.+.++|+..+...+.
T Consensus 80 -~~~aDlVi~av~----------------e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 -LKDADLVIEAAT----------------ENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred -hccCCeeeeccc----------------ccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 235788874221 2334556899999999999887754333
No 370
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=88.83 E-value=7 Score=35.05 Aligned_cols=114 Identities=24% Similarity=0.237 Sum_probs=72.2
Q ss_pred cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccC
Q 025039 40 EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADML 117 (259)
Q Consensus 40 ~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~ 117 (259)
.|-...+.+.+.+...... ..||-++=.-|.++..++..++ . ...| |--.-...++++..++++. +++. +..
T Consensus 27 awdaade~ll~~~~~~~~~-~~~~i~nd~fGal~~~l~~~~~-~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~~ 100 (378)
T PRK15001 27 AWEAADEYLLQQLDDTEIR-GPVLILNDAFGALSCALAEHKP-Y-SIGD-SYISELATRENLRLNGIDESSVKFL--DST 100 (378)
T ss_pred ccccHHHHHHHHHhhcccC-CCEEEEcCchhHHHHHHHhCCC-C-eeeh-HHHHHHHHHHHHHHcCCCcccceee--ccc
Confidence 3555555555555442222 3899999999999999996655 2 2234 2333445567788777653 3333 222
Q ss_pred CCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 118 DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 118 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+ +++ +.+|+|+..- |.........+..+.++|.||+.+++..
T Consensus 101 ~-~~~-~~~d~vl~~~----------------PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 101 A-DYP-QQPGVVLIKV----------------PKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred c-ccc-CCCCEEEEEe----------------CCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 2 223 4589988532 1355677889999999999999987654
No 371
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.81 E-value=2.1 Score=37.03 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=59.5
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~ 128 (259)
.+.++.+||..|+|. |..+..+++. |...+++++.+++..+.+++. +.+ .++..+-... ......+|+
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd~ 229 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFDV 229 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCcE
Confidence 345788999998764 6666666665 442488999998887777442 221 2222111110 112356899
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
++.... ....+..+.+.|+++|.++.+...
T Consensus 230 v~~~~~---------------------~~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 230 VIEATG---------------------VPKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred EEECCC---------------------ChHHHHHHHHHHhcCCEEEEEecC
Confidence 885311 024677778889999999876543
No 372
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.81 E-value=1.6 Score=36.89 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=52.0
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
.+.++....|+|+-+|..+-.|.+++- .|+++|--+ |.+.. -.. ..|+....|.++........|-.+|..+
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma~sL----~dt--g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MAQSL----MDT--GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccch-hhhhh----hcc--cceeeeeccCcccccCCCCCceEEeehh
Confidence 356789999999999999999999988 999999544 32222 211 2477777788776544567888777543
No 373
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.76 E-value=1.8 Score=37.26 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=59.1
Q ss_pred cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-C-cCCCCceeE
Q 025039 55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~~fD~ 128 (259)
.+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++. |...+ .....++.+ + ......+|+
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~----Ga~~vi~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKEL----GFDAVFNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCCEEEeCCCccHHHHHHHHCCCCcEE
Confidence 3567889999885 3 37777777765 55 899999888877777652 33221 111111111 0 111246898
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
|+... . ...+....+.|+++|.++.+.
T Consensus 215 vld~~--------------------g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 215 YFDNV--------------------G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEECC--------------------C--HHHHHHHHHhhccCCEEEEEc
Confidence 87421 1 145678889999999998764
No 374
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.65 E-value=2.8 Score=35.91 Aligned_cols=94 Identities=15% Similarity=0.265 Sum_probs=58.4
Q ss_pred CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc----------CC----------CCeEEEEcccC
Q 025039 60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----------GY----------KEVKVLEADML 117 (259)
Q Consensus 60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~v~~~~~d~~ 117 (259)
.+|.-+|+|. | .++..++..|. +|+.+|.+++.++.+++++... +. .++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH-
Confidence 4688999997 4 46667777787 8999999999998776543321 10 00111 1111
Q ss_pred CCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 118 DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 118 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
+ . -...|+|+..-+ +.......+++++.+.++|+.+++-
T Consensus 81 ~-~--~~~aDlVieav~----------------e~~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 81 E-S--LSDADFIVEAVP----------------EKLDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred H-H--hCCCCEEEEcCc----------------CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 1 1 134688775321 2334567888889888888876653
No 375
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.51 E-value=0.99 Score=40.14 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHH-------hhcCC--CCeEEEEcccCCCc---CC
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERL-------LLKGY--KEVKVLEADMLDLP---FS 122 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~--~~v~~~~~d~~~~~---~~ 122 (259)
+.+++...|+|+|-|.+...++..+.. .-+|+++.+..-+.+..+. +..|- ..+..+++++.... .-
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 567899999999999999988877554 7888888766555554322 11222 23677777776522 11
Q ss_pred CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
....++|+++.+.. + +++.-=+.++..-+++|.+++-.
T Consensus 270 ~~eatvi~vNN~~F---------------d-p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF---------------D-PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred hhcceEEEEecccC---------------C-HHHHHhhHHHHhhCCCcceEecc
Confidence 24578888876541 2 23333344888999999999854
No 376
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.38 E-value=0.74 Score=40.78 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE 99 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~ 99 (259)
+-..|+|+|+|.|.++..+.-...-.|.+||-|+...+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 447899999999999998864422299999999887777764
No 377
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.34 E-value=6.8 Score=31.90 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 124 (259)
++++||-.|++.|. ++..+++.|. +|++++-++...+.+.+.+...+ ++.++..|+.+.. + ..+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35689999986532 3334455677 89999998877766544443322 4677788877522 0 013
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCch--------hHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPE--------TVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.+|.++........ .++.. .+ +......+++.+.+.++.+|.++++..
T Consensus 81 ~id~ii~~ag~~~~-----~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVE-----DTVEE-FSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCC-----CchHH-HHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46777654321100 00000 00 001122346666677778888887654
No 378
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=87.89 E-value=2.2 Score=36.69 Aligned_cols=91 Identities=23% Similarity=0.256 Sum_probs=56.8
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.+.++.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++ + +.+.+.. .... .....+|+++..
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~---g~~~~~~----~~~~-~~~~~~d~vid~ 221 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-L---GVETVLP----DEAE-SEGGGFDVVVEA 221 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-c---CCcEEeC----cccc-ccCCCCCEEEEC
Confidence 345788999998754 5555555544 65 79999999888887765 2 3321111 1111 233568988852
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.. ....+..+.+.|+++|.++..
T Consensus 222 ~g---------------------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 222 TG---------------------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CC---------------------ChHHHHHHHHHhhcCCEEEEE
Confidence 10 023567778889999999974
No 379
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.86 E-value=2.1 Score=37.57 Aligned_cols=99 Identities=20% Similarity=0.315 Sum_probs=63.4
Q ss_pred cCCCCCcEEEEcCCC--CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC--cC-CCCcee
Q 025039 55 HIKPNSSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL--PF-SNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~-~~~~fD 127 (259)
.++++.+||-.|+.. |..++.|++. |. .++++--+++-.+.+++. +.+. +.+...|+.+- .. ....+|
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 356789999999544 7788888877 44 677777677655555443 4322 33334443321 11 224699
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
+|+..-. ...+....+.|+++|.++.+....
T Consensus 214 vv~D~vG----------------------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 214 VVLDTVG----------------------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EEEECCC----------------------HHHHHHHHHHhccCCEEEEEecCC
Confidence 9996321 256777889999999999876544
No 380
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=87.81 E-value=2 Score=36.21 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=48.3
Q ss_pred hHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCch
Q 025039 73 SEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPE 151 (259)
Q Consensus 73 ~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~ 151 (259)
+..|.+.|+. +|+|.|.++..++.+.+. |+ +.-...+... . ..+|+|+..-+
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~--~~~~~~~~~~--~--~~~DlvvlavP----------------- 54 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GI--IDEASTDIEA--V--EDADLVVLAVP----------------- 54 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS--SSEEESHHHH--G--GCCSEEEE-S------------------
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC--eeeccCCHhH--h--cCCCEEEEcCC-----------------
Confidence 5677788865 999999999998888654 32 2112222111 1 34699886433
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 152 TVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 152 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.....++++++...+++|+.+.=++
T Consensus 55 -~~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 55 -VSAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp -HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred -HHHHHHHHHHhhhhcCCCcEEEEeC
Confidence 3567889999999999988777543
No 381
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.58 E-value=2.9 Score=36.11 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=54.6
Q ss_pred CcEEEEcCCC-C-cchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039 60 SSVLELGCGN-S-RLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136 (259)
Q Consensus 60 ~~vLDiGcG~-G-~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 136 (259)
.+|.-+|+|. | .++..+.+.|.. +|+++|.+++.++.+++. +. ......+..+. -...|+|+..-+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--~~~~~~~~~~~---~~~aDvViiavp~- 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--GDRVTTSAAEA---VKGADLVILCVPV- 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--CceecCCHHHH---hcCCCEEEECCCH-
Confidence 5789999987 3 455566666653 899999999877766532 22 11111121111 1357988854321
Q ss_pred eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.....++..+...+++|+.++.+
T Consensus 77 -----------------~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 77 -----------------GASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred -----------------HHHHHHHHHHHhhCCCCCEEEeC
Confidence 33456777777888888866543
No 382
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.17 E-value=2.8 Score=31.83 Aligned_cols=91 Identities=21% Similarity=0.375 Sum_probs=55.1
Q ss_pred EEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc----------cCCCcCCCCceeEE
Q 025039 62 VLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD----------MLDLPFSNDCFDVV 129 (259)
Q Consensus 62 vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----------~~~~~~~~~~fD~V 129 (259)
|+-+|+|. |. ++..|++.|. +|+.+.-.+ .++..++. + +.+...+ ..........+|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~----g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQ----G---LTITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHH----C---EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhhe----e---EEEEecccceecccccccCcchhccCCCcEE
Confidence 56788887 54 4445556566 899999877 56654443 1 2222111 11111134679998
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
+..- ...+..++++.+.+.+.|+..+++.-.+
T Consensus 72 iv~v------------------Ka~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 72 IVAV------------------KAYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp EE-S------------------SGGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred EEEe------------------cccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 8532 1135567899999999999888876444
No 383
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.86 E-value=1.1 Score=39.92 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
++.+|+-+|+|. |..+...+.. |. +|+.+|.++..++.+...+.. .+.....+...+.-.-..+|+|+.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 456799999986 6666655544 66 899999998776666544321 1211111111111011358998864211
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 183 (259)
.. ...+.-+-++..+.++||++++-+...+...
T Consensus 241 ~g---------------~~~p~lit~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 241 PG---------------AKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred CC---------------CCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence 00 0001112355556789999988776655443
No 384
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.81 E-value=3.4 Score=40.50 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=66.0
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C-C---------CCeEEEEcccCCCc
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP 120 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~~ 120 (259)
.+|--+|+|+ +.++..++..|. .|+.+|.+++.++.+.+++... + + .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 5699999998 445666677788 8999999999999887765322 1 0 112211 12211
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
-...|+|+- .+ +++.+..++++.++-++++|+.+|...+.+
T Consensus 412 --~~~aDlViE-----Av-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 --FKNADMVIE-----AV-----------FEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred --hccCCeehh-----hc-----------cccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 134677663 22 246678889999999999999988865544
No 385
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.75 E-value=1.5 Score=39.08 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHH-HHHHHHHHhhcCCCCeEEEE-cccCCCcCCCCceeEEEec
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~ 132 (259)
.++.+||-.|+|. |..+..+++. |. ++++++.+++. .+.+++ .|.+. ++. .+...+....+.+|+|+..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~----lGa~~--~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDR----LGADS--FLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHh----CCCcE--EEcCcCHHHHHHhhCCCcEEEEC
Confidence 4678999999876 7777777665 55 78999887543 344432 24321 111 1100110001247888742
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
. .....+....+.+++||.++.+..
T Consensus 250 ~---------------------G~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 250 V---------------------SAEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred C---------------------CcHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 112356777889999999998754
No 386
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.72 E-value=7.2 Score=33.89 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCC--CcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-C-cCCCCcee
Q 025039 56 IKPN--SSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFD 127 (259)
Q Consensus 56 ~~~~--~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~~fD 127 (259)
+.++ .+||-.|+ | .|..+..+++. |..++++++.+++..+.+++.+ |.+.+ .....++.+ + ......+|
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDAAINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCce
Confidence 4444 79999987 3 37777777776 4436999999988777766533 32221 111111111 0 01124689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+|+.... . ..+..+.+.|+++|.++.+.
T Consensus 227 ~vid~~g--------------------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 227 VYFDNVG--------------------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEECCC--------------------c--HHHHHHHHHhccCCEEEEEe
Confidence 8885211 1 23567788999999999764
No 387
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.72 E-value=2.3 Score=41.00 Aligned_cols=107 Identities=9% Similarity=0.101 Sum_probs=59.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhcC-------C-----C-eEEEeeCCH---HHHHHHHH-----------HHhh-----cC
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDG-------I-----T-AITCIDLSA---VAVEKMQE-----------RLLL-----KG 105 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~-~v~~vD~s~---~~~~~a~~-----------~~~~-----~~ 105 (259)
+.-+|+|+|=|+|.......+.. + . +++.+|..+ +-+..+.+ .... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998666554321 2 2 789999643 33322221 1111 11
Q ss_pred C-------C--CeEEEEcccCCC-cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHH-HHHHHHHHHhcccCCcEEE
Q 025039 106 Y-------K--EVKVLEADMLDL-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 106 ~-------~--~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~ 174 (259)
+ . .+++..+|+.+. +.-...+|+++..+ + ...+ +++. -.++++.+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~----F-sP~~--------np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG----F-APAK--------NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC----C-CCcc--------ChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 1 123445666542 21124588888432 2 1111 1111 2589999999999999999
Q ss_pred EEe
Q 025039 175 SVS 177 (259)
Q Consensus 175 ~~~ 177 (259)
..+
T Consensus 204 t~t 206 (662)
T PRK01747 204 TFT 206 (662)
T ss_pred Eee
Confidence 644
No 388
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.64 E-value=3.5 Score=36.26 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=57.2
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccC----CC-c-CCCCcee
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADML----DL-P-FSNDCFD 127 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~----~~-~-~~~~~fD 127 (259)
.++.+||-.|+|. |..+..+++.... ++++++.+++..+.+++ .+.+.+ .....+.. .+ . .....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3678899998765 6666666666444 79999988877666643 233221 11111110 00 0 1224689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|+.... ....+....+.|+++|.++.+..
T Consensus 252 ~vid~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 252 VVIEASG---------------------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEEECCC---------------------ChHHHHHHHHHhccCCEEEEEcC
Confidence 8884211 01356777889999999997653
No 389
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.59 E-value=6.2 Score=32.32 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCc--chHHHHh--c--CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-CcCCCCceeEEE
Q 025039 59 NSSVLELGCGNSR--LSEGLYN--D--GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LPFSNDCFDVVI 130 (259)
Q Consensus 59 ~~~vLDiGcG~G~--~~~~l~~--~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~fD~V~ 130 (259)
...+++.+|+.|. .++.|+. + |. ++++|-+++..+...++.+...+..+ ++|+.++..+ +-..-..+|+++
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4678888666442 3444433 2 44 89999999988888888887777655 6888877432 211224588887
Q ss_pred e
Q 025039 131 E 131 (259)
Q Consensus 131 ~ 131 (259)
.
T Consensus 121 V 121 (218)
T PF07279_consen 121 V 121 (218)
T ss_pred E
Confidence 4
No 390
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.54 E-value=3.6 Score=35.81 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=60.8
Q ss_pred cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc-ccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++.+ |.+.+ ..... +..+ + ......+|
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd 223 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGID 223 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcE
Confidence 4567899999997 3 37777777765 55 8999998888777776533 32221 11111 2111 0 11124688
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|+... . ...+....+.|+++|.++.+..
T Consensus 224 ~v~d~~--------------------g--~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 224 IYFDNV--------------------G--GKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred EEEECC--------------------C--HHHHHHHHHHhccCcEEEEecc
Confidence 887421 1 1457788899999999997653
No 391
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=86.49 E-value=3 Score=36.18 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=58.4
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEe
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIE 131 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~ 131 (259)
.+.++.+||-.|||. |..+..+++. |. +++.++.+++..+.+++. +.+. +.....+..........+|+++.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKL----GAHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc----CCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 345678999999765 6666666665 55 899999998877777542 3211 11111111110001134788874
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
... ....+..+.+.|+++|.++....
T Consensus 235 ~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 235 TAP---------------------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCC---------------------chHHHHHHHHHcccCCEEEEEec
Confidence 210 02467778889999999997654
No 392
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.47 E-value=3.3 Score=35.74 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=57.8
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEe
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIE 131 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~ 131 (259)
.+.++.+||-.|||. |..+..+++. |. ++++++.++...+.+++. +... ++...-.... .....+|+++.
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~~--~~~~~~~~~~~~~~~~~d~vi~ 231 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GADE--VVDSGAELDEQAAAGGADVILV 231 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCcE--EeccCCcchHHhccCCCCEEEE
Confidence 356778899999874 6666666665 55 899999998887777432 2111 1111100000 01235888874
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
... ....+..+.+.|+++|.++.+.
T Consensus 232 ~~~---------------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 232 TVV---------------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCC---------------------cHHHHHHHHHhcccCCEEEEEC
Confidence 211 0135677788999999998764
No 393
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=86.42 E-value=6.4 Score=33.91 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=56.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 132 (259)
.+.++.+||-.|||. |..+..+++. |. ++++++.+++..+.+++ .+.+ .++. .... ....+|+++..
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~----~g~~--~~~~--~~~~--~~~~vD~vi~~ 232 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARE----LGAD--WAGD--SDDL--PPEPLDAAIIF 232 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHH----hCCc--EEec--cCcc--CCCcccEEEEc
Confidence 355778888888765 5555555554 54 89999888876666643 2321 1111 1111 23458887742
Q ss_pred ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.. ....+..+.+.|+++|.++....
T Consensus 233 ~~---------------------~~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 233 AP---------------------VGALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred CC---------------------cHHHHHHHHHHhhcCCEEEEEcC
Confidence 11 02468889999999999997653
No 394
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.38 E-value=1.2 Score=38.88 Aligned_cols=98 Identities=22% Similarity=0.342 Sum_probs=57.4
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C--cCCCCceeE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~--~~~~~~fD~ 128 (259)
.+.++.+||..|+|. |..+..+++. |...+++++.++...+.+++. +... +.....++.+ + ......+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 345778899877754 6666666665 433788888887777666543 2111 1111111111 0 012356898
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
++.... ....+..+.+.|+++|.++...
T Consensus 240 vld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVG---------------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccC---------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 885211 0146778888999999998764
No 395
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.34 E-value=5.1 Score=38.45 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=46.9
Q ss_pred CCcEEEEcCCC-CcchH-HHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039 59 NSSVLELGCGN-SRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 131 (259)
Q Consensus 59 ~~~vLDiGcG~-G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 131 (259)
..+|+-+|||. |.... .+.+.+. .++.+|.+++.++.+++. +..++.+|..+.. ..-+..|++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 46899999987 66444 4455566 899999999999988652 4577889988743 22346777775
No 396
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.11 E-value=4.8 Score=39.27 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=65.8
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C----------CCCeEEEEcccCCCc
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP 120 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~~ 120 (259)
.+|--+|+|+ +.++..++..|. .|+.+|.+++.++.+++++... + ..+++.. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 4699999998 456666777888 9999999999999877654321 1 0112211 11111
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
-...|+|+-. + +++.+..++++.++-++++|+.+|...+.+
T Consensus 390 --~~~aDlViEa-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 390 --FDNVDIVVEA-----V-----------VENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred --hcCCCEEEEc-----C-----------cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1357777732 2 145677889999999999999888765544
No 397
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.92 E-value=3.4 Score=35.97 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=60.5
Q ss_pred ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEE-EcccCC-C-cCCCCcee
Q 025039 54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVL-EADMLD-L-PFSNDCFD 127 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~-~~d~~~-~-~~~~~~fD 127 (259)
..+.|+.+|--+|.|. |.++..++++ |. +|+++|-+..--+.+-+.+ |.+. +... ..|+.+ + ..-+.-.|
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSL---GADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhc---CcceeEEecCCHHHHHHHHHhhcCcce
Confidence 3456888888888776 8888888876 55 9999999875555554443 4322 2222 122211 0 01123344
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.|... ....++.+..+||++|.++++..-.
T Consensus 253 ~v~~~-----------------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 253 TVSNL-----------------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeec-----------------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 44421 1234677888999999999986544
No 398
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.88 E-value=17 Score=30.28 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=43.2
Q ss_pred CCCcEEEEcCCCC-cc----hHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039 58 PNSSVLELGCGNS-RL----SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS 122 (259)
Q Consensus 58 ~~~~vLDiGcG~G-~~----~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 122 (259)
.++.+|-.|+++| .+ +..+++.|. +|+.++.++...+.+++.....+ .+.++..|+.+.. ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHH
Confidence 4678999998752 44 445555677 78888887654333333222211 3345667776521 11
Q ss_pred CCceeEEEeccee
Q 025039 123 NDCFDVVIEKATM 135 (259)
Q Consensus 123 ~~~fD~V~~~~~l 135 (259)
.+..|+++.+..+
T Consensus 86 ~g~ld~lv~nAg~ 98 (258)
T PRK07533 86 WGRLDFLLHSIAF 98 (258)
T ss_pred cCCCCEEEEcCcc
Confidence 2568998877543
No 399
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.84 E-value=0.96 Score=37.88 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=37.7
Q ss_pred hHHHHhhcccCC--CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039 46 SHFRHLVQPHIK--PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL 102 (259)
Q Consensus 46 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 102 (259)
..+...+...++ +..+++|+-||+|..+..+...+. +++.-|+++..+...+..++
T Consensus 6 ~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 6 RKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHHHHHh
Confidence 345555555565 578999999999999988876555 89999999988877774443
No 400
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.82 E-value=7.6 Score=33.58 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=74.6
Q ss_pred HhhcccCCCC-CcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCC---CeEEEEcccCCCc---
Q 025039 50 HLVQPHIKPN-SSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYK---EVKVLEADMLDLP--- 120 (259)
Q Consensus 50 ~~l~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~--- 120 (259)
+.+...+..+ ..|+-+|||-=.-+-.+ .++. +|+-+|. |+.++.=++.+...+.. ..+.+..|+.+-.
T Consensus 83 ~~~~~~~~~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 83 DFVRAALDAGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHHhcccEEEEeccccccceeec--CCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 3444444444 78999999853322222 1222 5555553 77888777777776632 4788888887421
Q ss_pred -CC-----CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 121 -FS-----NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 121 -~~-----~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+. .+.--++++-+++-++ ..+...++++.+.....||..+++...
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL-------------~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYL-------------PEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccC-------------CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 22 2334467888888887 667889999999999999998887643
No 401
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=85.76 E-value=2.7 Score=37.12 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=59.8
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc--ccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|+|. |..+..+++. |..++++++.+++..+.+++. |... +..... ++.+ + ....+.+|
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVTEFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcccccchhHHHHHHHHhCCCCC
Confidence 456789999999875 6666666665 433799999999888877542 3211 111110 1100 0 11123588
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecC
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG 179 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 179 (259)
+++.... ....+..+.+.+++| |.++++...
T Consensus 260 ~vid~~G---------------------~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 260 YSFECTG---------------------NIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred EEEECCC---------------------ChHHHHHHHHHhhcCCCEEEEECcC
Confidence 8874210 124566677888996 999887543
No 402
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.69 E-value=12 Score=32.68 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=49.1
Q ss_pred CCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCCc
Q 025039 59 NSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC 125 (259)
Q Consensus 59 ~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~ 125 (259)
+.+||-.|++.|. ++..+++.|. +|+.++-++..++...+.+...+ .++.++..|+.+.. ..-+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG-GEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 4678888876543 3345566777 89999999888877776665544 25677788876632 01246
Q ss_pred eeEEEecce
Q 025039 126 FDVVIEKAT 134 (259)
Q Consensus 126 fD~V~~~~~ 134 (259)
+|+++.+..
T Consensus 86 iD~lInnAg 94 (334)
T PRK07109 86 IDTWVNNAM 94 (334)
T ss_pred CCEEEECCC
Confidence 898887643
No 403
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.64 E-value=2.4 Score=38.52 Aligned_cols=91 Identities=10% Similarity=0.193 Sum_probs=55.6
Q ss_pred CCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
-.+.+|+-+|+|. |......++ .|. +|+.+|.++.....+.. .|+ .+. ++.+. . ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~---~v~--~l~ea-l--~~aDVVI~aT- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF---RVM--TMEEA-A--ELGDIFVTAT- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC---Eec--CHHHH-H--hCCCEEEECC-
Confidence 3688999999997 655444443 455 89999999865433322 132 221 22221 1 2579987531
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHH-HHHhcccCCcEEEEEecCCc
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~ 181 (259)
....++. .....+|+|++++.......
T Consensus 276 --------------------G~~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 276 --------------------GNKDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred --------------------CCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 1123454 67889999999998765443
No 404
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.62 E-value=4.2 Score=35.44 Aligned_cols=99 Identities=23% Similarity=0.377 Sum_probs=59.6
Q ss_pred ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcc-------cCCCcCCC
Q 025039 54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEAD-------MLDLPFSN 123 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d-------~~~~~~~~ 123 (259)
..+.++.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. +.+.+ .....+ +... ...
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~-~~~ 232 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAEL-LGG 232 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHH-hCC
Confidence 3456788999888765 6666666665 442388998888777766542 32221 111111 1111 223
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
..+|+|+..... ...+....+.|+++|.++.+..
T Consensus 233 ~~~d~vld~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 233 KGPDVVIECTGA---------------------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCCCEEEECCCC---------------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 458998853110 1367788899999999987654
No 405
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.59 E-value=7.3 Score=33.27 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=55.5
Q ss_pred cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC---C-eEEEEcccCCCcCCCCceeEEEecce
Q 025039 61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK---E-VKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~-v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
+|+-+|+|. | .++..|++.|. +|+.++.+++.++..++. ++. . ......-..+.. ....+|+|+..-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPA-ELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChh-HcCCCCEEEEecc
Confidence 588899987 4 45556677776 899999877766665542 210 0 100000001111 1156898875321
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
......+++.+...+.++..++....+
T Consensus 76 ------------------~~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 76 ------------------AYQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred ------------------cccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 124567888888888888777765443
No 406
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.50 E-value=2.7 Score=34.11 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCC
Q 025039 58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLS 90 (259)
Q Consensus 58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s 90 (259)
...+||-+|||. | ..+..|+..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 467899999996 4 46667788888899999976
No 407
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.40 E-value=3.6 Score=35.37 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 124 (259)
.+..||--|+|.|. ++..++++|. +++..|++++..+...+.++..| .+.....|+.+.. .+-+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 46789999999874 6778888888 89999999999888888877665 5666666776521 2346
Q ss_pred ceeEEEeccee
Q 025039 125 CFDVVIEKATM 135 (259)
Q Consensus 125 ~fD~V~~~~~l 135 (259)
..|+++.+..+
T Consensus 114 ~V~ILVNNAGI 124 (300)
T KOG1201|consen 114 DVDILVNNAGI 124 (300)
T ss_pred CceEEEecccc
Confidence 79999988654
No 408
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.36 E-value=6 Score=38.64 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=65.8
Q ss_pred CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C----------CCCeEEEEcccCCCc
Q 025039 60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP 120 (259)
Q Consensus 60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~~ 120 (259)
.+|.-||+|+ | .++..++..|. .|+.+|.+++.++.+.+++... + ..++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 5799999998 4 56666777788 9999999999998877654321 1 0112211 12211
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
-...|+|+-. + +++.+..++++.++-++++|+.+|...+.+
T Consensus 390 --~~~aDlViEa-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 390 --FERVDVVVEA-----V-----------VENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred --hcCCCEEEec-----c-----------cCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1356777632 2 256678889999999999999888765544
No 409
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.32 E-value=1.2 Score=38.97 Aligned_cols=99 Identities=25% Similarity=0.318 Sum_probs=59.2
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C-c-CCCCceeE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-P-FSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~-~-~~~~~fD~ 128 (259)
.+.++.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. +.+. +.....++.+ + . .....+|+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 345788999998764 5666666665 443789999888887777542 3211 1111111111 1 0 12235899
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+.... ....+..+.+.|+++|.++.+..
T Consensus 245 vid~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 245 SFDCAG---------------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred EEECCC---------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 885321 02356778889999999998754
No 410
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=85.24 E-value=3.5 Score=36.40 Aligned_cols=96 Identities=22% Similarity=0.338 Sum_probs=58.7
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCC-C-cCCCCceeE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLD-L-PFSNDCFDV 128 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~-~~~~~~fD~ 128 (259)
+.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++. +.. .++.. +..+ + ......+|+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~--~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT--HVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc--EEecCCCcCHHHHHHHHhCCCCcE
Confidence 45678899998765 6666666665 553699999998877766542 221 12211 1100 0 011346898
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+..... ...+..+.+.|+++|.++.+..
T Consensus 258 vld~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 258 ALDTTGV---------------------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEECCCC---------------------cHHHHHHHHHhccCCEEEEeCc
Confidence 8842110 1357788889999999997643
No 411
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.99 E-value=6.1 Score=37.73 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=61.6
Q ss_pred CcEEEEcCCC-Ccch-HHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEecc
Q 025039 60 SSVLELGCGN-SRLS-EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKA 133 (259)
Q Consensus 60 ~~vLDiGcG~-G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~ 133 (259)
.+|+-+|+|. |... ..+.+.+. .++.+|.+++.++.+++. ...++.+|..+.. ..-+..|.+++.-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 5788888776 5543 33444566 899999999999988652 4577889988732 2234677777521
Q ss_pred eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
++.+....+.. ..+.+.|...++....+..+
T Consensus 473 -----------------~d~~~n~~i~~-~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 473 -----------------NEPEDTMKIVE-LCQQHFPHLHILARARGRVE 503 (601)
T ss_pred -----------------CCHHHHHHHHH-HHHHHCCCCeEEEEeCCHHH
Confidence 12233333333 45557788888876655433
No 412
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.89 E-value=1.6 Score=38.71 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=54.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 025039 57 KPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 119 (259)
Q Consensus 57 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 119 (259)
.+|.+|+|.+|-.|.-+.+++..-.+ ++.++|.++...+..++.+...|+..+...++|+...
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 35789999999999999999886442 8999999999999999999988987777778888774
No 413
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=84.79 E-value=2.7 Score=37.17 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=58.5
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc--ccCC-C-cCCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~-~~~~~~fD 127 (259)
.+.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++ + +... +..... +..+ + ....+.+|
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g~~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-L---GATECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---CCCeecccccccchHHHHHHHHhCCCCc
Confidence 456788999988765 6666656655 54358899988888777754 2 3211 111111 1101 0 01124688
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhccc-CCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK-PDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~ 178 (259)
+|+.... ....+..+.+.|+ ++|.++.+..
T Consensus 256 ~vid~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 256 YAFEVIG---------------------SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred EEEECCC---------------------CHHHHHHHHHHhccCCCEEEEEec
Confidence 8884210 0245677888899 9999997643
No 414
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=84.77 E-value=1.4 Score=36.29 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=45.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039 58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 118 (259)
Q Consensus 58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 118 (259)
.++-|.+||.|.|..+..+.+++..++..++.+...+.-.+...+... ....+.++|+..
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR 109 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLR 109 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccce
Confidence 457899999999999999999998889999998887776655433222 246666666654
No 415
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.48 E-value=1.4 Score=38.26 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=59.3
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C--cCCCCceeE
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDV 128 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~--~~~~~~fD~ 128 (259)
.+.++.+||..|+|. |..+..+++. |. +++++..+++..+.+++. +.+. +.....++.+ + ..+...+|+
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~ 230 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGADV 230 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCE
Confidence 456788999998764 6666666665 55 888888888877776442 2211 1111111111 1 112345899
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
++.... -...+..+.+.|+++|.++....
T Consensus 231 vld~~g---------------------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 231 VIDATG---------------------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred EEECCC---------------------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 885310 02456778889999999987643
No 416
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.45 E-value=7.2 Score=33.43 Aligned_cols=92 Identities=18% Similarity=0.288 Sum_probs=52.2
Q ss_pred cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc------c-CCCcCCCCceeEEEe
Q 025039 61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD------M-LDLPFSNDCFDVVIE 131 (259)
Q Consensus 61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~-~~~~~~~~~fD~V~~ 131 (259)
+|+-+|+|. |. ++..|++.|. +|+.++. ++.++..++. ++ .+....++ . .+.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRER----GL-VIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhC----Ce-EEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 588899998 43 5566677776 8999988 6666655432 21 11100000 0 111111246888774
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.-. ......+++.+...+.++..++...
T Consensus 75 avk------------------~~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 75 AVK------------------AYQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred Eec------------------ccCHHHHHHHHHhhcCCCCEEEEee
Confidence 321 1245678888888888887766553
No 417
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.04 E-value=3.2 Score=37.50 Aligned_cols=90 Identities=11% Similarity=0.159 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
..+++|+-+|+|. |......++. |. +|+++|.++.....+.. .|+ .+. ++.+. . ...|+|++...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~---~v~--~leea-l--~~aDVVItaTG 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF---RVM--TMEEA-A--KIGDIFITATG 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC---EeC--CHHHH-H--hcCCEEEECCC
Confidence 4688999999998 6666655554 55 89999998864433322 132 222 22221 1 24688875311
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHH-HHHhcccCCcEEEEEecCC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~ 180 (259)
...++. .....+|+|++++......
T Consensus 260 ---------------------~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 260 ---------------------NKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred ---------------------CHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 123444 4778999999999876554
No 418
>PRK08324 short chain dehydrogenase; Validated
Probab=83.80 E-value=9.5 Score=37.00 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCC--c-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039 58 PNSSVLELGCGNS--R-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 124 (259)
++++||-.|++.| . ++..+++.|. +|+++|.++..++.+.+.+... ..+.++..|+.+.. + ..+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4678888887543 2 3344555677 8999999988777666554332 25677777876521 1 123
Q ss_pred ceeEEEecce
Q 025039 125 CFDVVIEKAT 134 (259)
Q Consensus 125 ~fD~V~~~~~ 134 (259)
.+|+|+.+..
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 6899887643
No 419
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.61 E-value=4.4 Score=34.81 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=58.6
Q ss_pred CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh-------hcCC----------CCeEEEEcccCCCc
Q 025039 60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLL-------LKGY----------KEVKVLEADMLDLP 120 (259)
Q Consensus 60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~----------~~v~~~~~d~~~~~ 120 (259)
.+|.-+|+|. | .++..++..|. +|+++|.+++.++.+++++. ..+. ..+.+ ..+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHH--
Confidence 4688899996 4 56666777787 89999999999887665432 1110 01111 112111
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
. ...|+|+..-. ++.+....++.++...++|+.+++.
T Consensus 81 ~--~~aD~Vieav~----------------e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 81 L--RDADFIIEAIV----------------ESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred h--CCCCEEEEcCc----------------cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 34688875321 3446667888889998988876653
No 420
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.60 E-value=3.3 Score=37.15 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=35.5
Q ss_pred cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039 55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL 102 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 102 (259)
.+.++.+||-|++|..... .++..++.+|++||+|+..+...+=++.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L-~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNAL-DYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCCeEEEEccCCchHH-HHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 4668899999987755444 4566777799999999988877765543
No 421
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=83.60 E-value=1.9 Score=36.44 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=39.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhcC-----CC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCC
Q 025039 56 IKPNSSVLELGCGNSRLSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL 119 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 119 (259)
+.++..++|+|||.|.++.+++... .. .++.||-..... .+..++....- +.+.=+..|+.++
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence 4577899999999999999998864 23 899999755332 33333332221 1233344566554
No 422
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=83.60 E-value=3.9 Score=36.43 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=58.6
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc---cc----CCCcCCCC
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA---DM----LDLPFSND 124 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~---d~----~~~~~~~~ 124 (259)
.+.++.+||-.|+|. |..++.+++. |...+++++.++...+.+++. +.+.+ ..... +. ..+ ....
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~~v~~~-~~g~ 274 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----GADYVFNPTKMRDCLSGEKVMEV-TKGW 274 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEEcccccccccHHHHHHHh-cCCC
Confidence 456788898888765 5666656655 443799999888766555542 33221 11110 11 111 1234
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.+|+|+.... .....+..+.+.|+++|.++.+..
T Consensus 275 gvDvvld~~g--------------------~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 275 GADIQVEAAG--------------------APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCEEEECCC--------------------CcHHHHHHHHHHHHcCCEEEEECC
Confidence 6898885311 112456777888999999998653
No 423
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.58 E-value=8.8 Score=37.45 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=64.8
Q ss_pred CcEEEEcCCC-C-cchHHHH-hcCCCeEEEeeCCHHHHHHHHHHHhhc-------C-C---------CCeEEEEcccCCC
Q 025039 60 SSVLELGCGN-S-RLSEGLY-NDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDL 119 (259)
Q Consensus 60 ~~vLDiGcG~-G-~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~ 119 (259)
.+|.-+|+|+ | .++..++ ..|. .|+..|.+++.++.+.+++... + + .++++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence 5799999998 4 4455555 5577 8999999999998887654321 1 0 112221 12111
Q ss_pred cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
-...|+|+-. . +++.+-.++++.++-++++|+.+|.-.+.+
T Consensus 387 ---~~~aDlViEa-----v-----------~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 387 ---FKHADVVIEA-----V-----------FEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred ---hccCCEEeec-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1357777732 2 246677889999999999999888865544
No 424
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=83.53 E-value=11 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCC
Q 025039 58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLS 90 (259)
Q Consensus 58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s 90 (259)
...+|+-+|||. | ..+..|+..|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 357899999997 4 46667788888789999977
No 425
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.52 E-value=15 Score=30.57 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039 58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 124 (259)
.++++|-.|++.| .++..+++.|. +|+.++.++..++...+.. + ..+.++..|+.+.. + ..+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3567888887554 24445566687 8999999876555444332 2 24677788887632 0 113
Q ss_pred ceeEEEecce
Q 025039 125 CFDVVIEKAT 134 (259)
Q Consensus 125 ~fD~V~~~~~ 134 (259)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 5788886643
No 426
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.45 E-value=3.8 Score=32.52 Aligned_cols=92 Identities=23% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCC-cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC---CCeEEEEcccCCCc---------CCC
Q 025039 58 PNS-SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLP---------FSN 123 (259)
Q Consensus 58 ~~~-~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~---------~~~ 123 (259)
++. .|+.+|||-=.....+...... +++-+|. |++++.-++.+...+. .+.+++..|+.+.. +..
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 444 8999999987777777765432 6666665 5566666665554421 12456888887521 223
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHH
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (259)
+..-++++-+++.++ ..+...++++.+
T Consensus 156 ~~ptl~i~Egvl~Yl-------------~~~~~~~ll~~i 182 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYL-------------SPEQVDALLRAI 182 (183)
T ss_dssp TSEEEEEEESSGGGS--------------HHHHHHHHHHH
T ss_pred CCCeEEEEcchhhcC-------------CHHHHHHHHHHh
Confidence 455677888888877 556667777654
No 427
>PRK07576 short chain dehydrogenase; Provisional
Probab=83.37 E-value=17 Score=30.32 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 124 (259)
++.++|-.|++.|. ++..+++.|. +|++++.++..++...+.+...+ ..+.+...|+.+.. + ..+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46688888864432 3344555676 89999998877666555444333 24566777876521 0 123
Q ss_pred ceeEEEecc
Q 025039 125 CFDVVIEKA 133 (259)
Q Consensus 125 ~fD~V~~~~ 133 (259)
.+|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579988654
No 428
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.11 E-value=3 Score=31.85 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=26.5
Q ss_pred EEcCCCC--cchHHHH--hcCCC-eEEEeeCCHHHHHHHHHH--Hhhc
Q 025039 64 ELGCGNS--RLSEGLY--NDGIT-AITCIDLSAVAVEKMQER--LLLK 104 (259)
Q Consensus 64 DiGcG~G--~~~~~l~--~~~~~-~v~~vD~s~~~~~~a~~~--~~~~ 104 (259)
|+|++.| .....+. ..++. +++++|+++..++..+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6555553 34444 899999999999999988 4443
No 429
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.07 E-value=8.1 Score=33.35 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=31.8
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHH
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER 100 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~ 100 (259)
.+|.-+|+|. +.++..++..|. +|+++|.+++.++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 4688899997 456666777777 899999999998888764
No 430
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=82.97 E-value=1.9 Score=32.11 Aligned_cols=100 Identities=12% Similarity=0.234 Sum_probs=53.4
Q ss_pred HHHhhcccCCCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCc
Q 025039 48 FRHLVQPHIKPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDC 125 (259)
Q Consensus 48 ~~~~l~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 125 (259)
+...+.... +..+|+|+|-|. -..+..|.+.|. .|+++|+.+. ++. ..+.+..-|+++.... =..
T Consensus 4 ~a~~ia~~~-~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~----~g~~~v~DDif~P~l~iY~~ 70 (127)
T PF03686_consen 4 FAEYIARLN-NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP----EGVNFVVDDIFNPNLEIYEG 70 (127)
T ss_dssp HHHHHHHHS--SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTT
T ss_pred HHHHHHHhC-CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc----cCcceeeecccCCCHHHhcC
Confidence 344444333 345999999998 567788888898 9999999986 111 2467778888873311 136
Q ss_pred eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.|+|++..+ ..+++..+-++++.+ |.-+++..++.
T Consensus 71 a~lIYSiRP------------------P~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 71 ADLIYSIRP------------------PPELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp EEEEEEES--------------------TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred CcEEEEeCC------------------ChHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 899997432 234445555555443 46677666554
No 431
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.82 E-value=4.2 Score=36.95 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=29.3
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHH
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKM 97 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a 97 (259)
.+|.-+|.|. +.++..|++.|. +|+++|.++..++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 4688899987 345666777887 899999999988864
No 432
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=82.66 E-value=6.1 Score=33.02 Aligned_cols=73 Identities=29% Similarity=0.368 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCC-CcchH-HHHhcCCCeEEEeeCC-------------------HHHHHHHHHHHhhcCCCCeEEEEccc
Q 025039 58 PNSSVLELGCGN-SRLSE-GLYNDGITAITCIDLS-------------------AVAVEKMQERLLLKGYKEVKVLEADM 116 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~~vD~s-------------------~~~~~~a~~~~~~~~~~~v~~~~~d~ 116 (259)
+..+|+-+|+|. |..+. .|++.|..+++.+|.+ +.-++.++++++..+ |.+++...+.
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~In-P~c~V~~~~~ 107 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQIN-PECEVTAIND 107 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhC-CCceEeehHh
Confidence 356899999987 66555 6677788789999844 233455666665544 4455544332
Q ss_pred C-CC----cCCCCceeEEEe
Q 025039 117 L-DL----PFSNDCFDVVIE 131 (259)
Q Consensus 117 ~-~~----~~~~~~fD~V~~ 131 (259)
+ .. .+-...||.|+.
T Consensus 108 f~t~en~~~~~~~~~DyvID 127 (263)
T COG1179 108 FITEENLEDLLSKGFDYVID 127 (263)
T ss_pred hhCHhHHHHHhcCCCCEEEE
Confidence 1 11 122347898884
No 433
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.65 E-value=8.7 Score=36.28 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=45.1
Q ss_pred CcEEEEcCCC-CcchH-HHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039 60 SSVLELGCGN-SRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 131 (259)
Q Consensus 60 ~~vLDiGcG~-G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 131 (259)
.+|+-+|||. |.... .+.+.|. +++.+|.+++.++.+++. +...+.+|..+.. ..-+.+|.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 6788888887 55433 4444566 899999999988888642 4678899988732 22346786654
No 434
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.62 E-value=16 Score=31.10 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCH-HHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 123 (259)
+++++|-.|++.|. ++..+++.|. +|+.++.++ ...+.....+...+ .++.++..|+.+.. + ..
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35688888876643 4455666777 788887764 33333333333333 24677788876522 1 01
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCch--------hHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPE--------TVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+.+|+++.+.......... .....+ +......+++.+.+.++++|.++++.
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~---~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSL---EDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCc---ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 3578887654321110000 000000 11223345666677777788877754
No 435
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.37 E-value=19 Score=32.73 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=45.6
Q ss_pred CCCcEEEEcCCC-Ccc-hHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039 58 PNSSVLELGCGN-SRL-SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 131 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 131 (259)
+..+|+-+|+|. |.. +..|.+.|. .++.+|.+++.++.+++.. .++.++.+|..+.. ..-..+|.|++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 457899999976 433 333334466 8999999999888777653 24677888886532 22346788775
No 436
>PLN02702 L-idonate 5-dehydrogenase
Probab=82.36 E-value=5.5 Score=35.06 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=58.4
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE---cccCC----Cc-CCCC
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE---ADMLD----LP-FSND 124 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~----~~-~~~~ 124 (259)
.+.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++. +.+.+.... .+..+ +. ....
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhhcCC
Confidence 345778899998764 6666666654 544688999988777766542 322221111 11111 10 1124
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
.+|+|+.... . ...+..+.+.|+++|.++.+..
T Consensus 254 ~~d~vid~~g-----------------~----~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 254 GIDVSFDCVG-----------------F----NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred CCCEEEECCC-----------------C----HHHHHHHHHHHhcCCEEEEEcc
Confidence 5888875211 0 1357888889999999887653
No 437
>PLN02494 adenosylhomocysteinase
Probab=82.36 E-value=4.6 Score=37.18 Aligned_cols=90 Identities=12% Similarity=0.237 Sum_probs=55.0
Q ss_pred CCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
-.+++|+-+|+|. |......++ .|. +|+++|.++.....+... ++ .+. ++.+. . ...|+|++...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~----G~---~vv--~leEa-l--~~ADVVI~tTG 318 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALME----GY---QVL--TLEDV-V--SEADIFVTTTG 318 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhc----CC---eec--cHHHH-H--hhCCEEEECCC
Confidence 3589999999998 655554444 355 899999988643333221 22 221 22221 1 24798886211
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
...-+.......||+||+++.+...
T Consensus 319 --------------------t~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 319 --------------------NKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred --------------------CccchHHHHHhcCCCCCEEEEcCCC
Confidence 1112347788899999999987653
No 438
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=82.22 E-value=4.9 Score=33.20 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=44.7
Q ss_pred cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHH-HHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039 61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQE-RLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 131 (259)
Q Consensus 61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 131 (259)
+++-+|||. | .++..|.+.|. .|+.+|.+++.++.... .. ....+++|..+.. ..-..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~------~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL------DTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc------ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 578899997 4 45566677777 89999999988777333 21 4677888887632 23356888875
No 439
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.67 E-value=3.2 Score=36.08 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=57.2
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc---cCCC-c-CCCCcee
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD---MLDL-P-FSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~-~-~~~~~fD 127 (259)
.+.++.+||..|+|. |..+..+++. |...+++++-++...+.+++. +.. .++... ...+ . .....+|
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~--~~~~~~~~~~~~~~~~~~~~~~d 229 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD--DTINPKEEDVEKVRELTEGRGAD 229 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC--EEecCccccHHHHHHHhCCCCCC
Confidence 345778899998765 6666666665 442399998888777666432 321 111111 1111 1 1223589
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+++.... ....+..+.+.|+++|.++.+.
T Consensus 230 ~vld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 230 LVIEAAG---------------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEEECCC---------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 9885310 1245677889999999988765
No 440
>PRK08507 prephenate dehydrogenase; Validated
Probab=81.15 E-value=6.4 Score=33.39 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=51.7
Q ss_pred cEEEEcCCC--CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039 61 SVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137 (259)
Q Consensus 61 ~vLDiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 137 (259)
+|.-+|+|. |.++..+.+.|.. +++++|.++..++.+.+ .+. +.. ..+..+. . ..|+|+..-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~--~~~-~~~~~~~--~--~aD~Vilav---- 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGL--VDE-IVSFEEL--K--KCDVIFLAI---- 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCC--Ccc-cCCHHHH--h--cCCEEEEeC----
Confidence 467788887 4566777777754 79999999987776643 232 111 1122121 1 278887532
Q ss_pred eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 174 (259)
......+++.++.. ++++..++
T Consensus 67 --------------p~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 67 --------------PVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred --------------cHHHHHHHHHHHhc-cCCCCEEE
Confidence 22455677888888 88777554
No 441
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=81.12 E-value=4.4 Score=35.25 Aligned_cols=97 Identities=25% Similarity=0.318 Sum_probs=56.8
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc----CCCcCCCCceeE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM----LDLPFSNDCFDV 128 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~~~~~~~~fD~ 128 (259)
+.++.+||-.|+|. |..+..+++. |..++++++.++.....+++. +.+. +.....+. ... .....+|+
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~-~~~~~~d~ 238 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLEL-TDGRGVDV 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHH-hCCCCCCE
Confidence 45678888888754 5555555554 524788899888776666542 3222 12111111 111 12346898
Q ss_pred EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+.... ....+..+.+.|+++|.++.+..
T Consensus 239 vld~~g---------------------~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 239 VIEAVG---------------------IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred EEECCC---------------------CHHHHHHHHHhccCCcEEEEecc
Confidence 874210 02356777899999999987643
No 442
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=80.88 E-value=5 Score=33.93 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcC--CCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC--cC-CCCceeEE
Q 025039 56 IKPNSSVLELGC--GNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL--PF-SNDCFDVV 129 (259)
Q Consensus 56 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~-~~~~fD~V 129 (259)
+++|..||--.+ |-|.++..|++.....+++.-.+.+-.+.|+++ |... |.....|+.+- .+ ....+|++
T Consensus 144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngKGVd~v 219 (336)
T KOG1197|consen 144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGKGVDAV 219 (336)
T ss_pred CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCCCceee
Confidence 568888876544 447777788777554788887777777777765 4322 45555565431 11 13468888
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+.+-. ...+.....+|||+|+++-..
T Consensus 220 yDsvG----------------------~dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 220 YDSVG----------------------KDTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred ecccc----------------------chhhHHHHHHhccCceEEEec
Confidence 75322 245677888999999998643
No 443
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.78 E-value=30 Score=29.70 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc----------CCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP----------FSN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~----------~~~ 123 (259)
.++.||--||..|. ++..++++|. +++.+--....++...+.++..+-.+ +.++..|+.+.. ..-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 46789999998874 6667777887 77777778888888866665555445 888889988742 134
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhHHHHH-----------HHHHHHHhcccCC--cEEEEEec
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVM-----------AMLEGVHRVLKPD--GLFISVSF 178 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~Lkpg--G~l~~~~~ 178 (259)
+..|+.+.|..+... . .+.. .+..+.+ .+.+.+...|+.. |.++++..
T Consensus 90 g~vDvLVNNAG~~~~--~---~~~~--~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisS 150 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLV--G---FLED--TDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISS 150 (282)
T ss_pred CCCCEEEecCccccc--c---cccc--CcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEec
Confidence 679999988655331 1 0110 1222333 3455566666543 88888654
No 444
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.76 E-value=3.1 Score=31.28 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
++.++|-+|+|. | ..+..|+..|..+++.+.-+.+..+...+.+.. ..+.+... .++......+|+|+...+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---~~~~~~~~--~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---VNIEAIPL--EDLEEALQEADIVINATPS 85 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---CSEEEEEG--GGHCHHHHTESEEEE-SST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---cccceeeH--HHHHHHHhhCCeEEEecCC
Confidence 578999999986 3 344466667886799999988766666555521 23444433 3332112469999975443
No 445
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.36 E-value=4.2 Score=36.50 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=48.2
Q ss_pred CcEEEEcCCC-CcchHHH-HhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecce
Q 025039 60 SSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT 134 (259)
Q Consensus 60 ~~vLDiGcG~-G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~ 134 (259)
.+||-+|||. |....+. ++.+..+|+..|-+...++.+..... .+++....|+.+.+ .--..+|+|+...+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4799999987 6655554 55563499999999888877766532 25777777877642 01134598886543
No 446
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.35 E-value=7.4 Score=33.74 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=53.0
Q ss_pred CCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH-hhcCC-CCeEEEEcccCCCcCCCCceeEEEecce
Q 025039 59 NSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERL-LLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT 134 (259)
Q Consensus 59 ~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 134 (259)
..+|+-+|+|. |.++..|++.|. +|+.+.-++. +..+++- ..... .+..+....+...+-....+|+|+..--
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 35799999997 557777777777 7777776642 2222210 00000 0011100001111111246898875321
Q ss_pred eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
. .+..++++.+..++++++.++....+
T Consensus 82 ~------------------~~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 82 T------------------TANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred C------------------CChHhHHHHHhhhcCCCCEEEEecCC
Confidence 1 12356788888889999987765433
No 447
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=79.94 E-value=1.5 Score=41.25 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=64.9
Q ss_pred ccCCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----Cc----CCC
Q 025039 54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LP----FSN 123 (259)
Q Consensus 54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~----~~~ 123 (259)
.++.++..|||+||.+|..+...++..+. -|+|+|+-|- ..++++..++.|+.. .+ ...
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHh
Confidence 45678899999999999988877776433 7999999762 133455555556543 11 233
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchh-HHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPET-VTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
...|+|+..++- +.+..|.-..-. .......|+-+...|+.||.++.-.+
T Consensus 109 ~~advVLhDgap-----nVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf 159 (780)
T KOG1098|consen 109 WKADVVLHDGAP-----NVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF 159 (780)
T ss_pred CCCcEEeecCCC-----ccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc
Confidence 457888865431 223333210000 01123455666678889999775443
No 448
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.56 E-value=6.7 Score=30.44 Aligned_cols=92 Identities=26% Similarity=0.309 Sum_probs=54.4
Q ss_pred cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039 61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 138 (259)
Q Consensus 61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 138 (259)
+|-=||+|. | .++..|++.|+ +|++.|.+++..+...+. .+.. ..+..+.. ...|+|+..-
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~-------g~~~-~~s~~e~~---~~~dvvi~~v----- 65 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA-------GAEV-ADSPAEAA---EQADVVILCV----- 65 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT-------TEEE-ESSHHHHH---HHBSEEEE-S-----
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh-------hhhh-hhhhhhHh---hcccceEeec-----
Confidence 456678876 3 45666677788 899999999877776653 2222 22222221 2458887532
Q ss_pred eeCCCCCCCCCchhHHHHHHHHHH--HHhcccCCcEEEEEecCCc
Q 025039 139 FVNSGDPWNPQPETVTKVMAMLEG--VHRVLKPDGLFISVSFGQP 181 (259)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~ 181 (259)
.+.+...+++.. +...|++|..++-.+-..+
T Consensus 66 ------------~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 66 ------------PDDDAVEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp ------------SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred ------------ccchhhhhhhhhhHHhhccccceEEEecCCcch
Confidence 134567788888 8888988888886544443
No 449
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=79.49 E-value=5.8 Score=34.61 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=57.2
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----C-cCCCCceeEE
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----L-PFSNDCFDVV 129 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~-~~~~~~fD~V 129 (259)
.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++ + +.. .++...-.. + ....+.+|++
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g~~--~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A---GAD--VVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---CCc--EEecCCCccHHHHHHHHhCCCCcEE
Confidence 3678899888765 6666666665 54478899988887777744 2 321 122111001 1 0111268888
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.... ....+..+.+.|+++|.++.+..
T Consensus 248 id~~g---------------------~~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 248 IDFVN---------------------NSATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EECCC---------------------CHHHHHHHHHHhhcCCeEEEECC
Confidence 85211 02357888899999999997643
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.38 E-value=12 Score=32.34 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCC-CcchHHH-HhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039 58 PNSSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 135 (259)
.+.+|+-+|+|. |..+... ...|. +|+.+|.++...+.++. .+. .+.. ..++...-..+|+|+..-+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G~---~~~~--~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MGL---SPFH--LSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCC---eeec--HHHHHHHhCCCCEEEECCCh
Confidence 578999999987 5444433 33465 99999999876555443 232 2221 11111112368999863211
Q ss_pred eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
.-+-++..+.++||++++-+...+
T Consensus 221 ---------------------~~i~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 221 ---------------------LVLTKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred ---------------------hhhhHHHHHcCCCCcEEEEEccCC
Confidence 113355667889998887655544
No 451
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.92 E-value=6.7 Score=32.60 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=25.6
Q ss_pred CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCC
Q 025039 58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLS 90 (259)
Q Consensus 58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s 90 (259)
...+||-+|||. | ..+..|+..|..+++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356899999996 4 45667777888899999854
No 452
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=78.70 E-value=6.2 Score=34.15 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=57.1
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc----cCCCcCCCCceeEE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD----MLDLPFSNDCFDVV 129 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----~~~~~~~~~~fD~V 129 (259)
+.++.+||-.|+|. |..+..+++. |..++++++-+++..+.+++ .+.+.+-....+ +..+ .+...+|+|
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~i~~~-~~~~~~dvv 239 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGADHVLNASDDVVEEVREL-TGGRGADAV 239 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCcEEEcCCccHHHHHHHH-hCCCCCCEE
Confidence 45678899999765 5555555555 42388899888877666643 232111111111 1111 123468998
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.... -...+..+.+.|+++|.++....
T Consensus 240 ld~~g---------------------~~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 240 IDFVG---------------------SDETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred EEcCC---------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 84211 02457778888999999997653
No 453
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.67 E-value=15 Score=28.95 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=24.3
Q ss_pred cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCH
Q 025039 61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSA 91 (259)
Q Consensus 61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~ 91 (259)
+|+-+|||. | ..+..|+..|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 588999996 4 466677888887899999764
No 454
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=78.61 E-value=18 Score=31.77 Aligned_cols=96 Identities=21% Similarity=0.311 Sum_probs=56.5
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----C--cCCCCcee
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----L--PFSNDCFD 127 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~--~~~~~~fD 127 (259)
+.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++. +.. .++..+-.. + ......+|
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~--~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GAT--HTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc--eEecCCcccHHHHHHHHhCCCCCC
Confidence 35677888877654 6666666655 442499999888877766432 321 122111111 0 11235689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+|+..-. . ...+..+.+.|+++|.++.+..
T Consensus 259 ~vld~vg-----------------~----~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 259 VVVEALG-----------------K----PETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred EEEEeCC-----------------C----HHHHHHHHHHHhcCCEEEEEcc
Confidence 9885211 0 1256778889999999987643
No 455
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.14 E-value=12 Score=31.97 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=25.9
Q ss_pred CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCC
Q 025039 58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLS 90 (259)
Q Consensus 58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s 90 (259)
.+.+|+-+|||. | ..+..|++.|..+++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467899999996 4 56667778887789999955
No 456
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.87 E-value=20 Score=32.28 Aligned_cols=106 Identities=22% Similarity=0.310 Sum_probs=62.1
Q ss_pred CCcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----------C-----cC
Q 025039 59 NSSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----------L-----PF 121 (259)
Q Consensus 59 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----------~-----~~ 121 (259)
..+|--+|-|. |. ++..++++|. +|+|+|+++..++...+- ...+..-+... + +.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G-------~~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRG-------ESYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCC-------cceeecCcHHHHHHHHHhcCCceEecChh
Confidence 46788888886 53 5556677788 899999999988876542 11111111110 0 00
Q ss_pred CCCceeEEE-ecc-eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 122 SNDCFDVVI-EKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 122 ~~~~fD~V~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
.-...|+++ |-+ ++.. + ...+..-.....+.+.+.|++|-.+++-.-..|.
T Consensus 81 ~l~~~dv~iI~VPTPl~~-~---------~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 81 ELKECDVFIICVPTPLKK-Y---------REPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred hcccCCEEEEEecCCcCC-C---------CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 011345543 322 1211 0 1124456678899999999999888876544443
No 457
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=77.86 E-value=17 Score=35.51 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=63.5
Q ss_pred CcEEEEcCCC-Cc-chHHHH-hcCCCeEEEeeCCHHHHHHHHHHHhhc-------C----------CCCeEEEEcccCCC
Q 025039 60 SSVLELGCGN-SR-LSEGLY-NDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDL 119 (259)
Q Consensus 60 ~~vLDiGcG~-G~-~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~ 119 (259)
.+|.-||+|+ |. ++..++ ..|. .|+.+|.+++.++.+..++... + ..++++. .|...
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRG- 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHH-
Confidence 4799999998 54 334445 3687 8999999999988887654211 1 0112221 12211
Q ss_pred cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
-...|+|+-. . +++.+..++++.++-++++|+.+|...+.+
T Consensus 382 ---~~~adlViEa-----v-----------~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 422 (699)
T TIGR02440 382 ---FKDVDIVIEA-----V-----------FEDLALKHQMVKDIEQECAAHTIFASNTSS 422 (699)
T ss_pred ---hccCCEEEEe-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence 1356777732 2 246677889999999999999888765544
No 458
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=77.85 E-value=14 Score=32.04 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=55.2
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----C--cCCCCcee
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----L--PFSNDCFD 127 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~--~~~~~~fD 127 (259)
+.++.+||-.|+|. |..+..+++. |..++++++.+++..+.+++ .+. ..+..+-.+ + ..+...+|
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA---EPINFEDAEPVERVREATEGRGAD 237 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC---eEEecCCcCHHHHHHHHhCCCCCC
Confidence 45678888887654 5555555554 43378888888766665544 232 111111111 0 01234689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+++.... -...+....+.|+++|.++.+..
T Consensus 238 vvid~~~---------------------~~~~~~~~~~~l~~~g~~v~~g~ 267 (344)
T cd08284 238 VVLEAVG---------------------GAAALDLAFDLVRPGGVISSVGV 267 (344)
T ss_pred EEEECCC---------------------CHHHHHHHHHhcccCCEEEEECc
Confidence 8884211 02467778888999999887643
No 459
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.68 E-value=6.2 Score=34.80 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=26.9
Q ss_pred CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCH
Q 025039 58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSA 91 (259)
Q Consensus 58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~ 91 (259)
...+||-+|||. | ..+..|+..|..+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999996 4 466677888887899999764
No 460
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.50 E-value=39 Score=27.90 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCC-Cc----chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039 58 PNSSVLELGCGN-SR----LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS 122 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~----~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 122 (259)
.++.+|-.|+++ +. ++..+++.|. +|+.++.++...+.+++. . + ..+.++..|+.+.. ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~-~--~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL-V--D-EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh-c--c-CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888863 33 4445556677 888887764433333222 1 1 24667778886521 01
Q ss_pred CCceeEEEeccee
Q 025039 123 NDCFDVVIEKATM 135 (259)
Q Consensus 123 ~~~fD~V~~~~~l 135 (259)
.+.+|+++.+..+
T Consensus 81 ~g~iD~lv~nAg~ 93 (252)
T PRK06079 81 VGKIDGIVHAIAY 93 (252)
T ss_pred hCCCCEEEEcccc
Confidence 2568998876543
No 461
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.44 E-value=9.3 Score=30.83 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.1
Q ss_pred CCCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCC
Q 025039 58 PNSSVLELGCGN--SRLSEGLYNDGITAITCIDLS 90 (259)
Q Consensus 58 ~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s 90 (259)
...+||-+|||. +..+..|+..|..+++.+|.+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 356899999986 345666777788889999854
No 462
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.26 E-value=6.9 Score=33.67 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCC-------------------HHHHHHHHHHHhhcCCCCeEE--EEc
Q 025039 58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLS-------------------AVAVEKMQERLLLKGYKEVKV--LEA 114 (259)
Q Consensus 58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s-------------------~~~~~~a~~~~~~~~~~~v~~--~~~ 114 (259)
...+||-+|||. | ..+..|+..|..+++.+|.+ ....+.+.+++++.+ +.+.+ ...
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~ 96 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTG 96 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEec
Confidence 357899999986 3 45667777788889999844 233455566666555 34443 333
Q ss_pred ccCCCcCCCCceeEEEec
Q 025039 115 DMLDLPFSNDCFDVVIEK 132 (259)
Q Consensus 115 d~~~~~~~~~~fD~V~~~ 132 (259)
....-.+ ..||+|++.
T Consensus 97 ~~~~~~l--~~fdvVV~~ 112 (286)
T cd01491 97 PLTTDEL--LKFQVVVLT 112 (286)
T ss_pred cCCHHHH--hcCCEEEEe
Confidence 3211112 468988863
No 463
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.93 E-value=14 Score=30.93 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=48.7
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C----CCCc
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F----SNDC 125 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~ 125 (259)
.++++|-.|++.|. ++..+++.|. +|+.++.++..++.+.+.+....-.++.++..|+.+.. + ..+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 45678888887653 5556666787 89999999887777666554321124677788877632 0 1145
Q ss_pred eeEEEecc
Q 025039 126 FDVVIEKA 133 (259)
Q Consensus 126 fD~V~~~~ 133 (259)
.|+++.+.
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 78877654
No 464
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=76.91 E-value=18 Score=31.28 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=54.6
Q ss_pred cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-CCC------CeEEEEcccCCCcCCCCceeEEEe
Q 025039 61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-GYK------EVKVLEADMLDLPFSNDCFDVVIE 131 (259)
Q Consensus 61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~------~v~~~~~d~~~~~~~~~~fD~V~~ 131 (259)
+|.-+|+|. +.++..+++.|. +|+.+|.++..++..++..... ..+ ++.. ..+..+ .....|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCEEEE
Confidence 578889886 355666667777 8999999988877666531100 000 1111 111111 1135688775
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
.- .......+++.+...++++..++.+
T Consensus 78 ~v------------------~~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 78 AV------------------PSQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred eC------------------CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 32 1245677788888888888776654
No 465
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=76.57 E-value=9 Score=33.11 Aligned_cols=96 Identities=15% Similarity=0.243 Sum_probs=58.2
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CC----CcCCCCce
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LD----LPFSNDCF 126 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~----~~~~~~~f 126 (259)
.+.++.+||-.|+|. |..+..+++. |. ++++++-+++..+.+++ + +.+. ++.... .. +.-..+.+
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~-~---g~~~--v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKE-V---GADL--TINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHH-c---CCcE--EecccccccHHHHHHHhcCCC
Confidence 456788999999765 6777777774 55 89999999988888743 2 3221 111110 11 10001246
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+++.... -...+..+.+.|+++|.++.+..
T Consensus 232 d~vi~~~~---------------------~~~~~~~~~~~l~~~G~~v~~g~ 262 (338)
T PRK09422 232 HAAVVTAV---------------------AKAAFNQAVDAVRAGGRVVAVGL 262 (338)
T ss_pred cEEEEeCC---------------------CHHHHHHHHHhccCCCEEEEEee
Confidence 74442110 02467888889999999997653
No 466
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=76.46 E-value=16 Score=31.76 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=63.6
Q ss_pred CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eE---EEEcccC----CCcC-----CCC
Q 025039 60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VK---VLEADML----DLPF-----SND 124 (259)
Q Consensus 60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~---~~~~d~~----~~~~-----~~~ 124 (259)
.+|--+|+|+ | ..+..++..|. .|+..|+++++++.++...... +.+ +. +...+.. .+.. .-.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~-l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKN-LEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHH-HHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 4688899998 4 34445555456 8999999999999887765433 000 00 0000000 0100 112
Q ss_pred ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039 125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180 (259)
Q Consensus 125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 180 (259)
..|+|+- .. +++.+-.++++.++-.+++|+.+|--.+.+.
T Consensus 82 ~~DlVIE-----Av-----------~E~levK~~vf~~l~~~~~~~aIlASNTSsl 121 (307)
T COG1250 82 DADLVIE-----AV-----------VEDLELKKQVFAELEALAKPDAILASNTSSL 121 (307)
T ss_pred cCCEEEE-----ec-----------cccHHHHHHHHHHHHhhcCCCcEEeeccCCC
Confidence 3566653 22 2566788899999999999999988765543
No 467
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.01 E-value=17 Score=30.73 Aligned_cols=94 Identities=23% Similarity=0.309 Sum_probs=57.3
Q ss_pred CCCCCcEEEEcCC--CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C-cCCCCceeEEE
Q 025039 56 IKPNSSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDVVI 130 (259)
Q Consensus 56 ~~~~~~vLDiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~V~ 130 (259)
+.++.+||-.|+. .|..+..+++. |. +++++..+++..+.+++ .+.+.+-....+... + .. ...+|+++
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~i~~~-~~~~d~vl 213 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKE----LGADEVVIDDGAIAEQLRAA-PGGFDKVL 213 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCcEEEecCccHHHHHHHh-CCCceEEE
Confidence 4578899999873 36777777665 54 89999888877666643 233222111111110 1 12 34688887
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
... . ...+..+.+.|+++|.++.+.
T Consensus 214 ~~~--------------------~--~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 214 ELV--------------------G--TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred ECC--------------------C--hHHHHHHHHHhccCCEEEEEc
Confidence 421 1 135777889999999998764
No 468
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=75.76 E-value=4.1 Score=35.43 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=55.9
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C--cCCCCceeEE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDVV 129 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~--~~~~~~fD~V 129 (259)
..++.+||-.|+|. |..+..+++. |...+++++-++...+.+++. +... +.....++.+ + ......+|+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 45677888877653 5555556554 442388888888777666543 3211 1111111111 0 1123468998
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.... ....+..+.+.|+++|.++....
T Consensus 235 ld~~g---------------------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 235 LEMSG---------------------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred EECCC---------------------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 85311 02457778889999999987654
No 469
>PRK05867 short chain dehydrogenase; Provisional
Probab=75.75 E-value=13 Score=30.60 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 124 (259)
.++++|-.|++.|. ++..+++.|. +|+.++.+++.++...+.+...+ .++.++..|+.+.. + ..+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46789999987653 4555666787 89999999887777766665444 24667777876522 0 114
Q ss_pred ceeEEEecce
Q 025039 125 CFDVVIEKAT 134 (259)
Q Consensus 125 ~fD~V~~~~~ 134 (259)
..|+++.+..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 6898887643
No 470
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.73 E-value=4.2 Score=32.49 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=55.2
Q ss_pred cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc---C----------CCCeEEEEcccCCCcCCCCc
Q 025039 61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK---G----------YKEVKVLEADMLDLPFSNDC 125 (259)
Q Consensus 61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~----------~~~v~~~~~d~~~~~~~~~~ 125 (259)
+|--+|.|- | .++..+++.|. +|+|+|++++.++...+..... + -.+..+. .|.... -..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hhc
Confidence 567788886 4 45667777888 9999999999888776421100 0 0112221 111110 124
Q ss_pred eeEEEec-ce-eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 126 FDVVIEK-AT-MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 126 fD~V~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
.|+++.. ++ .+. . ...+..-..++++.+.+.++++-.+++-+--.+.
T Consensus 77 adv~~I~VpTP~~~----~------~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 77 ADVVFICVPTPSDE----D------GSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp -SEEEE----EBET----T------TSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred cceEEEecCCCccc----c------CCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 6666532 21 110 0 0013466788999999999996666664333333
No 471
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=75.66 E-value=29 Score=29.83 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=52.2
Q ss_pred CCCcEEEE--cCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCC-C-c-CCCCcee
Q 025039 58 PNSSVLEL--GCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLD-L-P-FSNDCFD 127 (259)
Q Consensus 58 ~~~~vLDi--GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~-~-~~~~~fD 127 (259)
++..+|-+ |+|. |..+..+++. |. ++++++.++...+.+++ .+.+ .++.. ++.+ + . .....+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK----IGAE--YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCc--EEEECCCccHHHHHHHHhCCCCCc
Confidence 34556554 5544 6666666665 55 89999999888777765 2332 22221 1111 0 0 1223589
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+++..-. ...+....+.++++|.++.+..
T Consensus 215 ~vid~~g----------------------~~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 215 IFFDAVG----------------------GGLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEEECCC----------------------cHHHHHHHHhhCCCCEEEEEEe
Confidence 8884211 0123445677899999988754
No 472
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.54 E-value=34 Score=31.08 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=40.5
Q ss_pred cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039 61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 131 (259)
Q Consensus 61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 131 (259)
+|+-+|||. |. ++..|.+.|. .++++|.+++.++.+++.. .+.++.+|..+.. ..-..+|.|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRL------DVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhc------CEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 577788765 33 2223334466 8999999998877776531 4677778876521 12346887775
No 473
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=75.13 E-value=15 Score=34.06 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=57.5
Q ss_pred cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039 61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 138 (259)
Q Consensus 61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 138 (259)
+|--||.|. +.++..|++.|+ +|++.|.+++.++...+.....+. .+.. ..+..++...-...|+|+..-+
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~-~i~~-~~s~~e~v~~l~~~d~Iil~v~---- 75 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNT-RVKG-YHTLEELVNSLKKPRKVILLIK---- 75 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCC-ccee-cCCHHHHHhcCCCCCEEEEEeC----
Confidence 466788886 457777888888 899999999988877664332221 1111 1222221111123576553210
Q ss_pred eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
+.+....+++.+...|++|-+++-.
T Consensus 76 -------------~~~~v~~vi~~l~~~L~~g~iIID~ 100 (470)
T PTZ00142 76 -------------AGEAVDETIDNLLPLLEKGDIIIDG 100 (470)
T ss_pred -------------ChHHHHHHHHHHHhhCCCCCEEEEC
Confidence 2245667788888899888766543
No 474
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.07 E-value=8.7 Score=35.85 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cCC----------CCeEEEEcccCCC
Q 025039 59 NSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KGY----------KEVKVLEADMLDL 119 (259)
Q Consensus 59 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~----------~~v~~~~~d~~~~ 119 (259)
-.+|--||+|+ | .++..++..|. .|+..|.+++.++.+.+++.. .|. .+++. ..|...
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~~~~- 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTDLHA- 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCCHHH-
Confidence 35689999997 4 56667777888 899999999999887654321 120 01221 122211
Q ss_pred cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039 120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175 (259)
Q Consensus 120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 175 (259)
. ...|+|+..- . ++.+....++.++.+.++|+.++..
T Consensus 82 -l--~~aDlVIEav-~---------------E~~~vK~~vf~~l~~~~~~~~Ilas 118 (503)
T TIGR02279 82 -L--ADAGLVIEAI-V---------------ENLEVKKALFAQLEELCPADTIIAS 118 (503)
T ss_pred -h--CCCCEEEEcC-c---------------CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 1 2478877421 1 3445667788888888887766543
No 475
>PRK07806 short chain dehydrogenase; Provisional
Probab=74.95 E-value=44 Score=27.23 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCCC--c-chHHHHhcCCCeEEEeeCCH-HHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039 58 PNSSVLELGCGNS--R-LSEGLYNDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 123 (259)
.+.++|-.|+..| . ++..+++.|. +|++++-+. ...+.....+...+ .++.++..|+.+.. + ..
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3567888886443 2 3334445676 788877653 33444433333323 24677778877632 0 01
Q ss_pred CceeEEEecceeeeeeeCCCCCCCC-CchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNP-QPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+..|+++.+...... .. ..+.. ..-+......+++.+.+.++.+|.++++.
T Consensus 83 ~~~d~vi~~ag~~~~-~~--~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGME-SG--MDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCC-CC--CCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 357887755432110 00 00000 00122334567777777777777777654
No 476
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=74.88 E-value=21 Score=30.86 Aligned_cols=93 Identities=19% Similarity=0.310 Sum_probs=53.6
Q ss_pred cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC---C-cCCCCcee
Q 025039 55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---L-PFSNDCFD 127 (259)
Q Consensus 55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~-~~~~~~fD 127 (259)
.+.++.+||-.|+ |. |..+..+++. |. ++++++.+. ..+.+++ .+. . .+...+-.. . ......+|
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~----~g~-~-~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRA----LGA-D-TVILRDAPLLADAKALGGEPVD 245 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHh----cCC-e-EEEeCCCccHHHHHhhCCCCCc
Confidence 3567889999998 33 6666666665 54 788887554 4444432 233 1 111111000 0 11234689
Q ss_pred EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+|+... . ...+..+.+.|+++|.++.+.
T Consensus 246 ~vi~~~--------------------g--~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 246 VVADVV--------------------G--GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred EEEecC--------------------C--HHHHHHHHHHhccCCEEEEec
Confidence 888421 1 135677889999999998764
No 477
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.83 E-value=15 Score=31.97 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=55.3
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEccc---CCCcCCCCceeEE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADM---LDLPFSNDCFDVV 129 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~---~~~~~~~~~fD~V 129 (259)
..++.+||-.|+|. |..+..+++. |...+++++-+++..+.+++. +.+.+ .....+. .+. ...+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~-~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSV-TDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHH-cCCCCCCEE
Confidence 35678888877765 5666666665 432688887777666655542 32111 1111111 111 123468998
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+.... ....+..+.+.|+++|.++.+..
T Consensus 236 ld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 236 LEMSG---------------------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred EECCC---------------------CHHHHHHHHHHhccCCEEEEEcc
Confidence 85311 02356677888999999987643
No 478
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.55 E-value=26 Score=30.47 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=58.0
Q ss_pred cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHH---hhc-C--CC-CeEEEEcccCCCcCCCCceeEEEe
Q 025039 61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERL---LLK-G--YK-EVKVLEADMLDLPFSNDCFDVVIE 131 (259)
Q Consensus 61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~~-~--~~-~v~~~~~d~~~~~~~~~~fD~V~~ 131 (259)
+|.-+|||. |. ++..|++.|. +|+.++.+++.++..++.- ... + ++ ++... .|..+. ..+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~--~~~~~Dliii 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV--LSDNATCIIL 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH--HhCCCCEEEE
Confidence 578899998 44 6667777776 8899999887777666531 100 0 10 11111 111110 1135788774
Q ss_pred cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHh-cccCCcEEEEEecC
Q 025039 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR-VLKPDGLFISVSFG 179 (259)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~~ 179 (259)
.- .......+++.+.. .++++..++...-+
T Consensus 78 av------------------ks~~~~~~l~~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 78 AV------------------PTQQLRTICQQLQDCHLKKNTPILICSKG 108 (326)
T ss_pred Ee------------------CHHHHHHHHHHHHHhcCCCCCEEEEEEcC
Confidence 21 33567788898887 88888877665433
No 479
>PRK06128 oxidoreductase; Provisional
Probab=74.54 E-value=47 Score=28.27 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHH--HHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----C
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAV--AVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----S 122 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 122 (259)
.++++|-.|++.|. ++..+++.|. +|+.+..+.. ..+...+.+...+ ..+.++..|+.+.. + .
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG-RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 35688888875542 4445555677 7777665432 2333333333333 24667778876521 0 1
Q ss_pred CCceeEEEecceeeeeeeCCCCCCCC-Cchh--------HHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 123 NDCFDVVIEKATMEVLFVNSGDPWNP-QPET--------VTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 123 ~~~fD~V~~~~~l~~~~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
.+..|+++.+....... .++.. ..+. ......+++.+.+.|+++|.++.+.
T Consensus 132 ~g~iD~lV~nAg~~~~~----~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAV----KDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCC----CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 13689988765432110 00000 0001 1112245666777778888887753
No 480
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.52 E-value=14 Score=30.25 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C--CCCceeEE
Q 025039 60 SSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F--SNDCFDVV 129 (259)
Q Consensus 60 ~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~--~~~~fD~V 129 (259)
++++-.|+..|. ++..+++.|. +|++++.++...+...+.+...+..++.+...|+.+.. . -...+|++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 367877765432 3444555676 89999998876665555444333335788888887632 0 01246888
Q ss_pred Eecc
Q 025039 130 IEKA 133 (259)
Q Consensus 130 ~~~~ 133 (259)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8653
No 481
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.44 E-value=49 Score=27.48 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCC-CcchH----HHHhcCCCeEEEeeCC---HHHHHHHHHHHhhcCCCCeEEEEcccCCCc---------
Q 025039 58 PNSSVLELGCGN-SRLSE----GLYNDGITAITCIDLS---AVAVEKMQERLLLKGYKEVKVLEADMLDLP--------- 120 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~----~l~~~~~~~v~~vD~s---~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------- 120 (259)
.++.+|-.|+++ +.++. .+++.|. +|+.++.+ ++.++...+.+. + .++.++..|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--G-QESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--C-CceEEEecCCCCHHHHHHHHHHH
Confidence 467899999863 44444 4455677 78877644 233443333221 2 24667777886622
Q ss_pred -CCCCceeEEEecce
Q 025039 121 -FSNDCFDVVIEKAT 134 (259)
Q Consensus 121 -~~~~~fD~V~~~~~ 134 (259)
..-+.+|+++.+..
T Consensus 82 ~~~~g~ld~lv~nag 96 (257)
T PRK08594 82 KEEVGVIHGVAHCIA 96 (257)
T ss_pred HHhCCCccEEEECcc
Confidence 11256898876543
No 482
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=74.34 E-value=32 Score=29.68 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=31.0
Q ss_pred cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHH
Q 025039 61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQER 100 (259)
Q Consensus 61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~ 100 (259)
+|.-+|+|. | .++..+++.|. +|+++|.++..++.++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~~ 44 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPAY 44 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHHH
Confidence 688899986 3 56667777787 899999999888877653
No 483
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=74.20 E-value=5.7 Score=34.97 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=57.6
Q ss_pred cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccC-CC-c-CCCCce
Q 025039 55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DML-DL-P-FSNDCF 126 (259)
Q Consensus 55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~-~~-~-~~~~~f 126 (259)
.+.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++ + +.. .++.. +.. ++ . .+...+
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~---g~~--~vv~~~~~~~~~~l~~~~~~~~v 252 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-F---GAT--HTVNASEDDAVEAVRDLTDGRGA 252 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-h---CCe--EEeCCCCccHHHHHHHHcCCCCC
Confidence 355778899888754 6666666655 54249999988887766643 2 321 22211 110 01 0 123468
Q ss_pred eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
|+++.... ....+..+.+.|+++|.++....
T Consensus 253 d~vld~~~---------------------~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 253 DYAFEAVG---------------------RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred CEEEEcCC---------------------ChHHHHHHHHHhhcCCeEEEEec
Confidence 98874211 02457788889999999987643
No 484
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=74.14 E-value=18 Score=31.41 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=60.0
Q ss_pred CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc--C------CCcCCCCceeEE
Q 025039 60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM--L------DLPFSNDCFDVV 129 (259)
Q Consensus 60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~------~~~~~~~~fD~V 129 (259)
.+|+-+|||. |.++..|++.| ..|+.+--++. ++..+++ |+ .+....- . ..+.....+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL---~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GL---RIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----Ce---EEecCCCccccccccccChhhcCCCCEE
Confidence 3688999997 56777788888 46666665554 6655553 22 2221111 0 011122468998
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 182 (259)
+..- ..-+..++++.+...+++...+++.-.+..+
T Consensus 72 iv~v------------------Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~ 106 (307)
T COG1893 72 IVTV------------------KAYQLEEALPSLAPLLGPNTVVLFLQNGLGH 106 (307)
T ss_pred EEEe------------------ccccHHHHHHHhhhcCCCCcEEEEEeCCCcH
Confidence 8521 1235678999999999999998887555444
No 485
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.03 E-value=53 Score=27.69 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=42.9
Q ss_pred CCCcEEEEcCCC-Cc----chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039 58 PNSSVLELGCGN-SR----LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS 122 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~----~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 122 (259)
.++.+|-.|++. +. ++..+++.|. +|+.++.++...+.+++.....+. . .++..|+.+.. ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 357889999862 33 3444556677 888888875433333332222231 2 45667776632 11
Q ss_pred CCceeEEEeccee
Q 025039 123 NDCFDVVIEKATM 135 (259)
Q Consensus 123 ~~~fD~V~~~~~l 135 (259)
.+.+|+++.+..+
T Consensus 81 ~g~iDilVnnAG~ 93 (274)
T PRK08415 81 LGKIDFIVHSVAF 93 (274)
T ss_pred cCCCCEEEECCcc
Confidence 2568998877543
No 486
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=73.88 E-value=11 Score=32.79 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=56.8
Q ss_pred CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-C--cCCCCceeEEE
Q 025039 57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L--PFSNDCFDVVI 130 (259)
Q Consensus 57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~--~~~~~~fD~V~ 130 (259)
.++.+||-.|+|. |..+..+++. |..++++++.++...+.+++. +.+.+ .....+..+ + ......+|+|+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 4677888888765 6666666665 443688888888776665542 32111 111111100 0 01234688888
Q ss_pred ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179 (259)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 179 (259)
.... ....+..+.+.|+++|.++.....
T Consensus 238 d~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 238 EMSG---------------------APSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred ECCC---------------------CHHHHHHHHHHHhcCCEEEEEecC
Confidence 5211 024567778899999999987653
No 487
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.62 E-value=53 Score=27.55 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCC--C---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039 58 PNSSVLELGCGN--S---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS 122 (259)
Q Consensus 58 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 122 (259)
+++.+|-.|++. | ..+..|++.|. +|+.++-++...+..++.....+ ....+..|+.+.. ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 457899999875 3 35556666787 88888876544333333322222 2235667876521 11
Q ss_pred CCceeEEEeccee
Q 025039 123 NDCFDVVIEKATM 135 (259)
Q Consensus 123 ~~~fD~V~~~~~l 135 (259)
.+..|+++.+..+
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2578998876543
No 488
>PRK07985 oxidoreductase; Provisional
Probab=73.47 E-value=50 Score=28.11 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCC--HHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLS--AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS 122 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~ 122 (259)
.++++|-.|++.|. ++..|++.|. +|+.++.+ ....+...+.+...+ ..+.++..|+.+.. ..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45689988876542 4555666777 78777643 333444444333333 24666777876521 01
Q ss_pred CCceeEEEecceeeeeeeCCCCCCCCCchh--------HHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 123 NDCFDVVIEKATMEVLFVNSGDPWNPQPET--------VTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
-+..|+++.+....... +......++. ......+++.+.+.++.+|.++++.
T Consensus 126 ~g~id~lv~~Ag~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQVAI---PDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCcCC---CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 24578887654321100 0000000011 1112245666677777788877754
No 489
>PRK12937 short chain dehydrogenase; Provisional
Probab=73.42 E-value=46 Score=26.97 Aligned_cols=115 Identities=22% Similarity=0.288 Sum_probs=57.8
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCC-HHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 123 (259)
++.++|-.|++.|. ++..+++.|. +++.+.-+ +...+...+.+...+ .++.++..|+.+.. + ..
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35678888885432 3445556677 66665443 333343434443333 24777778876521 0 11
Q ss_pred CceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEec
Q 025039 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVSF 178 (259)
Q Consensus 124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 178 (259)
+..|+++.+...... ...+....+.. .....+++.+.+.++++|.++.+..
T Consensus 82 ~~id~vi~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 82 GRIDVLVNNAGVMPL----GTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred CCCCEEEECCCCCCC----CChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 357888865432110 00000000001 1122345566667777888887653
No 490
>PRK08223 hypothetical protein; Validated
Probab=73.36 E-value=11 Score=32.33 Aligned_cols=31 Identities=32% Similarity=0.205 Sum_probs=25.5
Q ss_pred CCCcEEEEcCCC--CcchHHHHhcCCCeEEEee
Q 025039 58 PNSSVLELGCGN--SRLSEGLYNDGITAITCID 88 (259)
Q Consensus 58 ~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD 88 (259)
...+||-+|||. +..+..|+..|..+++.+|
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD 58 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIAD 58 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEe
Confidence 467999999996 4467788888888888888
No 491
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.10 E-value=16 Score=30.42 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=46.1
Q ss_pred CCCCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHH-HHHHHHHHhhcCCCCeEEEEcccCCCc---------CC
Q 025039 56 IKPNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLEADMLDLP---------FS 122 (259)
Q Consensus 56 ~~~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~ 122 (259)
+..+.+||-.||+.|. ++..+++.|..+|+.++-++.. ++.+.+.+...+..++.++..|+.+.. ..
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 3456789999986543 3333445542388888887664 555555554444335778888876522 11
Q ss_pred CCceeEEEec
Q 025039 123 NDCFDVVIEK 132 (259)
Q Consensus 123 ~~~fD~V~~~ 132 (259)
.+..|+++.+
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 2468887754
No 492
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.08 E-value=10 Score=32.90 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCC-CcchHHH-HhcCCCeEEEeeCCHHHHHHHH
Q 025039 58 PNSSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQ 98 (259)
Q Consensus 58 ~~~~vLDiGcG~-G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~ 98 (259)
++.+|+-+|+|. |...... ...|..+++.++.+++..+...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la 219 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA 219 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 578999999987 6654443 3345558999999976554433
No 493
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=72.90 E-value=9.5 Score=35.64 Aligned_cols=95 Identities=18% Similarity=0.317 Sum_probs=60.7
Q ss_pred CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cCC----------CCeEEEEcccCCCc
Q 025039 60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KGY----------KEVKVLEADMLDLP 120 (259)
Q Consensus 60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~----------~~v~~~~~d~~~~~ 120 (259)
.+|--||+|+ | .++..++..|. .|+..|.+++.++.+.+++.. .|. .+++.. .+...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~-- 83 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALAD-- 83 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 5688999997 4 56777788888 899999999999987554421 120 112221 22222
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
. ...|+|+..- . ++.+....++.++..+++|+.++...
T Consensus 84 ~--~~aDlViEav-~---------------E~~~vK~~vf~~l~~~~~~~ailasn 121 (507)
T PRK08268 84 L--ADCDLVVEAI-V---------------ERLDVKQALFAQLEAIVSPDCILATN 121 (507)
T ss_pred h--CCCCEEEEcC-c---------------ccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 1 2468877431 1 34456667788888888887766543
No 494
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=72.89 E-value=8.6 Score=33.41 Aligned_cols=96 Identities=19% Similarity=0.292 Sum_probs=56.9
Q ss_pred CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEE-cccCC-C-cCCCCceeEE
Q 025039 56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLE-ADMLD-L-PFSNDCFDVV 129 (259)
Q Consensus 56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~-~d~~~-~-~~~~~~fD~V 129 (259)
+.++.+||-.|||. |..+..+++. |. ++++++-+++..+.+++ + +.+.+ .... .+... + ....+.+|++
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~-~---g~~~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARE-L---GAVATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHH-h---CCCEEEccccchhHHHHHHHHhCCCCCEE
Confidence 45678999999764 5566666654 54 89999988887777743 2 33211 1111 11111 0 1111268888
Q ss_pred EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+..-. ....+....+.|+++|.++...
T Consensus 238 i~~~g---------------------~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 238 VDALG---------------------IPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred EEcCC---------------------CHHHHHHHHHHhhcCCEEEEeC
Confidence 85210 0235667888999999988754
No 495
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.88 E-value=20 Score=29.54 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 124 (259)
++.++|-.|++.|. ++..+++.|. +|+.++-+++.++...+.++..+ .++.++..|+.+.. ...+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56788888876532 3444556677 89999999877766666555444 24677788876521 0113
Q ss_pred ceeEEEecce
Q 025039 125 CFDVVIEKAT 134 (259)
Q Consensus 125 ~fD~V~~~~~ 134 (259)
.+|.++.+..
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 5788876543
No 496
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.54 E-value=20 Score=29.44 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEec
Q 025039 60 SSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK 132 (259)
Q Consensus 60 ~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~ 132 (259)
.+||-.|++.|. ++..+++.|. +|++++-++...+.........+ ..+.+...|+.+.. ......|+|+.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG-LALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 468888876542 3344556676 89998888766665555444333 24777788886632 112368888876
Q ss_pred ce
Q 025039 133 AT 134 (259)
Q Consensus 133 ~~ 134 (259)
..
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 43
No 497
>PRK05854 short chain dehydrogenase; Provisional
Probab=72.54 E-value=24 Score=30.43 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCc----------CCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP----------FSN 123 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~----------~~~ 123 (259)
.+.++|-.|++.|. ++..|++.|. +|+.+.-+....+.+.+.+.... -..+.++..|+.+.. ...
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35678888876653 4445566677 89999888776666655543321 124777888887632 112
Q ss_pred CceeEEEeccee
Q 025039 124 DCFDVVIEKATM 135 (259)
Q Consensus 124 ~~fD~V~~~~~l 135 (259)
+..|+++.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468998877543
No 498
>PRK12744 short chain dehydrogenase; Provisional
Probab=72.48 E-value=53 Score=27.03 Aligned_cols=113 Identities=13% Similarity=0.159 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCC----HHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------
Q 025039 58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLS----AVAVEKMQERLLLKGYKEVKVLEADMLDLP---------- 120 (259)
Q Consensus 58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------- 120 (259)
.+.++|-.|++.| .++..+++.|. +++.++.+ .+..+...+.+...+ .++.++..|+.+..
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAG-AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhC-CcEEEEecCcCCHHHHHHHHHHHH
Confidence 3568888887654 23444555676 65666432 233333333333223 24677788886521
Q ss_pred CCCCceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEE
Q 025039 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISV 176 (259)
Q Consensus 121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~ 176 (259)
...+..|+++.+...... ...+....+.. .....+++.+.+.++++|.++++
T Consensus 85 ~~~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLK----KPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCC----CCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 012468988876543110 11111111111 11223556677777777776654
No 499
>PRK07890 short chain dehydrogenase; Provisional
Probab=72.43 E-value=21 Score=29.32 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039 58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 124 (259)
Q Consensus 58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 124 (259)
++++||-.|++.|. ++..+++.|. +|++++.++...+.....+...+ .++.++..|+.+.. + .-+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45678888876542 4445666787 89999999877766665554333 24677888886521 0 114
Q ss_pred ceeEEEecce
Q 025039 125 CFDVVIEKAT 134 (259)
Q Consensus 125 ~fD~V~~~~~ 134 (259)
..|+|+.+..
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6788887643
No 500
>PRK06940 short chain dehydrogenase; Provisional
Probab=72.28 E-value=21 Score=30.01 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCcchHHHHh---cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C----CCCcee
Q 025039 60 SSVLELGCGNSRLSEGLYN---DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F----SNDCFD 127 (259)
Q Consensus 60 ~~vLDiGcG~G~~~~~l~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~fD 127 (259)
+.+|--|+| .++..+++ .|. +|+.++.++..++.+.+.+...+ .++.++..|+.+.. + ..+.+|
T Consensus 3 k~~lItGa~--gIG~~la~~l~~G~-~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGAG--GIGQAIARRVGAGK-KVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECCC--hHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 345666653 45555544 354 89999998877666655554333 24667777876522 1 124688
Q ss_pred EEEecceeeeeeeCCCCCCCCC-chhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039 128 VVIEKATMEVLFVNSGDPWNPQ-PETVTKVMAMLEGVHRVLKPDGLFISVS 177 (259)
Q Consensus 128 ~V~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 177 (259)
+++.+..+... ...|... .-+......+++.+.+.++++|..+++.
T Consensus 79 ~li~nAG~~~~----~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is 125 (275)
T PRK06940 79 GLVHTAGVSPS----QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA 125 (275)
T ss_pred EEEECCCcCCc----hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 88876543211 0001000 0011122335566666666666665543
Done!