Query 025040
Match_columns 259
No_of_seqs 138 out of 1273
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 4E-30 8.6E-35 219.7 11.3 213 3-215 79-296 (302)
2 PTZ00343 triose or hexose phos 100.0 5.2E-28 1.1E-32 210.1 15.3 209 5-213 130-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 2.2E-28 4.7E-33 205.6 12.4 215 2-218 96-313 (316)
4 PLN00411 nodulin MtN21 family 99.9 3E-25 6.6E-30 192.3 16.2 207 5-215 94-331 (358)
5 PF06027 DUF914: Eukaryotic pr 99.9 3.7E-25 8E-30 188.3 13.9 206 5-216 95-309 (334)
6 PF08449 UAA: UAA transporter 99.9 7.4E-25 1.6E-29 187.1 14.4 213 2-216 77-301 (303)
7 PRK11689 aromatic amino acid e 99.9 4E-23 8.6E-28 175.9 16.6 192 11-214 87-289 (295)
8 PRK11453 O-acetylserine/cystei 99.9 2.7E-23 5.9E-28 177.3 15.0 208 7-215 77-290 (299)
9 KOG1442 GDP-fucose transporter 99.9 1.6E-24 3.4E-29 173.8 6.2 220 2-222 115-337 (347)
10 PRK15430 putative chlorampheni 99.9 1E-22 2.2E-27 173.5 13.9 199 4-214 88-287 (296)
11 TIGR00950 2A78 Carboxylate/Ami 99.9 2.5E-22 5.3E-27 168.0 14.4 195 5-207 63-259 (260)
12 PRK11272 putative DMT superfam 99.9 1.5E-21 3.3E-26 166.0 14.8 199 5-213 85-286 (292)
13 KOG1443 Predicted integral mem 99.9 7E-21 1.5E-25 155.3 13.7 208 3-210 98-313 (349)
14 KOG1444 Nucleotide-sugar trans 99.9 6.7E-21 1.4E-25 157.3 11.7 214 4-218 92-306 (314)
15 TIGR03340 phn_DUF6 phosphonate 99.8 2E-20 4.4E-25 158.2 12.8 199 5-209 79-280 (281)
16 PRK10532 threonine and homoser 99.8 6.9E-20 1.5E-24 155.9 14.4 192 5-213 87-282 (293)
17 KOG1580 UDP-galactose transpor 99.8 1.1E-19 2.4E-24 143.2 7.4 208 2-211 98-312 (337)
18 COG0697 RhaT Permeases of the 99.8 1.1E-17 2.4E-22 141.5 15.5 197 5-213 86-288 (292)
19 PF03151 TPT: Triose-phosphate 99.7 1.9E-17 4.2E-22 127.4 11.9 143 70-212 1-153 (153)
20 KOG1581 UDP-galactose transpor 99.7 2E-17 4.4E-22 135.2 12.5 213 2-216 96-317 (327)
21 PF04142 Nuc_sug_transp: Nucle 99.7 3.2E-17 6.9E-22 135.1 11.8 194 5-202 33-243 (244)
22 KOG2765 Predicted membrane pro 99.7 3.8E-17 8.2E-22 137.0 11.4 208 5-214 175-392 (416)
23 COG5070 VRG4 Nucleotide-sugar 99.7 2.6E-17 5.6E-22 128.9 8.6 210 7-219 86-303 (309)
24 KOG1583 UDP-N-acetylglucosamin 99.7 1.9E-16 4.1E-21 127.8 12.8 212 4-215 79-317 (330)
25 KOG3912 Predicted integral mem 99.7 6.9E-17 1.5E-21 130.6 9.5 213 3-215 100-337 (372)
26 KOG2234 Predicted UDP-galactos 99.7 2.9E-16 6.2E-21 131.8 12.0 206 6-215 109-325 (345)
27 TIGR00776 RhaT RhaT L-rhamnose 99.7 6.4E-16 1.4E-20 131.1 13.4 197 4-212 74-288 (290)
28 COG2962 RarD Predicted permeas 99.7 2.8E-15 6.1E-20 122.6 15.7 198 9-218 92-289 (293)
29 TIGR00688 rarD rarD protein. T 99.7 3.9E-16 8.6E-21 130.3 10.7 171 4-187 85-255 (256)
30 KOG4510 Permease of the drug/m 99.7 3.8E-17 8.2E-22 131.2 2.8 201 3-212 111-325 (346)
31 KOG1582 UDP-galactose transpor 99.6 1.5E-15 3.4E-20 122.3 6.1 212 2-214 119-334 (367)
32 KOG2766 Predicted membrane pro 99.6 5.4E-15 1.2E-19 118.2 8.4 196 8-213 97-300 (336)
33 COG5006 rhtA Threonine/homoser 99.4 4.6E-13 9.9E-18 107.2 9.0 190 8-213 90-283 (292)
34 TIGR00803 nst UDP-galactose tr 99.4 4.2E-13 9.1E-18 109.7 5.6 193 13-210 2-222 (222)
35 COG2510 Predicted membrane pro 99.3 2.2E-11 4.7E-16 87.6 11.3 133 71-210 5-137 (140)
36 PF00892 EamA: EamA-like trans 99.2 5.2E-11 1.1E-15 87.9 8.3 124 79-211 1-125 (126)
37 KOG4314 Predicted carbohydrate 99.0 2.1E-09 4.6E-14 83.3 10.1 201 8-212 72-276 (290)
38 TIGR00688 rarD rarD protein. T 99.0 7.1E-09 1.5E-13 86.5 11.7 137 69-210 2-140 (256)
39 PRK15430 putative chlorampheni 98.9 2.6E-08 5.6E-13 85.0 13.0 140 66-211 5-144 (296)
40 TIGR03340 phn_DUF6 phosphonate 98.8 6.7E-08 1.5E-12 81.8 13.1 132 71-211 3-134 (281)
41 PLN00411 nodulin MtN21 family 98.7 2.3E-07 5E-12 81.0 12.9 138 69-212 13-156 (358)
42 PF06800 Sugar_transport: Suga 98.6 7.7E-07 1.7E-11 73.7 12.6 187 9-209 65-268 (269)
43 PF13536 EmrE: Multidrug resis 98.4 3.3E-08 7.2E-13 72.0 -0.6 61 4-65 50-110 (113)
44 PF05653 Mg_trans_NIPA: Magnes 98.4 7E-07 1.5E-11 76.0 6.8 199 4-212 65-292 (300)
45 COG2962 RarD Predicted permeas 98.4 8.6E-06 1.9E-10 67.4 11.8 141 67-213 5-145 (293)
46 PRK02971 4-amino-4-deoxy-L-ara 98.3 6.7E-06 1.5E-10 61.0 10.1 118 69-212 2-122 (129)
47 PTZ00343 triose or hexose phos 98.3 1.2E-05 2.7E-10 70.1 13.4 138 67-211 47-185 (350)
48 TIGR00950 2A78 Carboxylate/Ami 98.3 5.8E-06 1.3E-10 68.9 10.6 117 82-211 2-118 (260)
49 TIGR00817 tpt Tpt phosphate/ph 98.3 1.8E-05 3.8E-10 67.7 13.3 126 77-210 10-135 (302)
50 PRK11689 aromatic amino acid e 98.3 1.7E-05 3.6E-10 67.7 12.9 129 69-211 4-136 (295)
51 PRK11453 O-acetylserine/cystei 98.2 2.2E-05 4.8E-10 67.1 12.6 124 71-211 6-131 (299)
52 PRK11272 putative DMT superfam 98.2 3.8E-05 8.2E-10 65.4 13.3 129 71-211 10-140 (292)
53 PF00892 EamA: EamA-like trans 98.1 4.7E-07 1E-11 66.5 -0.4 57 3-59 68-124 (126)
54 PF13536 EmrE: Multidrug resis 98.0 1.9E-05 4.2E-10 57.3 6.5 70 144-214 38-108 (113)
55 TIGR00776 RhaT RhaT L-rhamnose 98.0 4.9E-05 1.1E-09 64.7 9.4 130 70-212 2-136 (290)
56 PF08449 UAA: UAA transporter 98.0 8.5E-05 1.8E-09 63.6 10.5 127 81-216 12-140 (303)
57 PRK15051 4-amino-4-deoxy-L-ara 98.0 1.5E-06 3.3E-11 62.8 -0.3 58 3-60 51-108 (111)
58 COG0697 RhaT Permeases of the 97.9 0.0004 8.6E-09 58.4 13.4 139 68-214 6-145 (292)
59 PRK15051 4-amino-4-deoxy-L-ara 97.9 4.4E-05 9.5E-10 55.2 6.4 55 157-211 54-108 (111)
60 PF04657 DUF606: Protein of un 97.8 0.00055 1.2E-08 51.5 11.6 131 71-209 3-138 (138)
61 PF06027 DUF914: Eukaryotic pr 97.7 0.00045 9.8E-09 59.6 10.5 74 141-214 80-153 (334)
62 PRK13499 rhamnose-proton sympo 97.5 0.0037 8E-08 54.1 13.5 205 6-212 90-341 (345)
63 PRK13499 rhamnose-proton sympo 97.5 0.0014 3E-08 56.7 10.4 142 68-216 6-157 (345)
64 COG2510 Predicted membrane pro 97.4 1.7E-05 3.8E-10 57.5 -1.5 57 5-61 83-139 (140)
65 PF04142 Nuc_sug_transp: Nucle 97.4 0.00022 4.8E-09 59.0 4.8 75 141-215 18-92 (244)
66 PRK10532 threonine and homoser 97.4 0.0034 7.3E-08 53.5 12.2 105 68-184 11-115 (293)
67 PRK02971 4-amino-4-deoxy-L-ara 97.3 4.9E-05 1.1E-09 56.4 -0.1 61 2-62 61-123 (129)
68 KOG2922 Uncharacterized conser 97.3 0.00067 1.5E-08 57.1 6.0 57 5-61 80-136 (335)
69 KOG4510 Permease of the drug/m 97.3 7.3E-05 1.6E-09 61.2 0.2 132 69-212 38-169 (346)
70 PRK10452 multidrug efflux syst 97.2 0.00081 1.7E-08 49.1 5.6 54 159-212 49-103 (120)
71 PF07857 DUF1632: CEO family ( 97.2 0.00027 5.9E-09 58.4 3.4 132 70-217 1-139 (254)
72 COG3238 Uncharacterized protei 96.9 0.022 4.9E-07 43.0 10.7 136 68-210 4-144 (150)
73 PRK09541 emrE multidrug efflux 96.9 0.0026 5.6E-08 45.8 5.4 53 160-212 50-103 (110)
74 COG2076 EmrE Membrane transpor 96.9 0.0039 8.5E-08 44.2 6.0 53 160-212 50-103 (106)
75 PRK11431 multidrug efflux syst 96.9 0.0047 1E-07 44.0 6.4 53 159-211 48-101 (105)
76 PRK10452 multidrug efflux syst 96.8 0.00032 6.9E-09 51.2 -0.2 60 2-61 43-103 (120)
77 KOG2234 Predicted UDP-galactos 96.7 0.075 1.6E-06 45.7 13.4 70 142-211 94-163 (345)
78 PRK10650 multidrug efflux syst 96.6 0.0083 1.8E-07 43.0 6.1 52 160-211 55-107 (109)
79 PF06800 Sugar_transport: Suga 96.6 0.028 6.1E-07 46.9 9.9 80 137-216 42-126 (269)
80 PRK09541 emrE multidrug efflux 96.4 0.00074 1.6E-08 48.6 -0.4 58 4-61 45-103 (110)
81 PF05653 Mg_trans_NIPA: Magnes 96.3 0.012 2.6E-07 50.3 6.7 117 67-211 5-121 (300)
82 COG4975 GlcU Putative glucose 96.2 0.00035 7.6E-09 56.6 -3.1 191 8-212 78-285 (288)
83 PRK11431 multidrug efflux syst 96.1 0.0014 3.1E-08 46.7 -0.0 56 5-60 45-101 (105)
84 PF03151 TPT: Triose-phosphate 96.0 0.0037 8.1E-08 47.5 1.9 55 6-60 98-152 (153)
85 PRK10650 multidrug efflux syst 96.0 0.0017 3.6E-08 46.6 -0.1 54 6-59 52-106 (109)
86 PF00893 Multi_Drug_Res: Small 95.9 0.016 3.5E-07 40.4 4.5 45 159-203 48-93 (93)
87 COG2076 EmrE Membrane transpor 95.5 0.004 8.7E-08 44.1 0.1 55 6-60 47-102 (106)
88 COG5006 rhtA Threonine/homoser 95.4 0.011 2.4E-07 48.3 2.3 53 5-57 226-278 (292)
89 PF00893 Multi_Drug_Res: Small 95.2 0.0072 1.6E-07 42.2 0.8 49 3-51 43-92 (93)
90 COG4975 GlcU Putative glucose 95.0 0.025 5.3E-07 46.2 3.4 131 70-214 3-138 (288)
91 KOG2765 Predicted membrane pro 94.6 0.022 4.7E-07 49.2 2.1 75 141-215 160-234 (416)
92 KOG1580 UDP-galactose transpor 94.5 0.073 1.6E-06 43.2 4.7 60 156-215 101-160 (337)
93 PF10639 UPF0546: Uncharacteri 93.9 0.16 3.6E-06 36.6 5.1 53 157-209 58-111 (113)
94 PF07168 Ureide_permease: Urei 92.7 0.39 8.5E-06 40.5 6.3 137 75-214 2-148 (336)
95 PF10639 UPF0546: Uncharacteri 92.7 0.031 6.7E-07 40.3 -0.1 53 7-59 59-112 (113)
96 KOG4314 Predicted carbohydrate 88.9 0.11 2.3E-06 41.1 -0.3 62 153-214 66-127 (290)
97 KOG1441 Glucose-6-phosphate/ph 88.5 0.27 5.8E-06 42.2 1.8 65 141-205 84-148 (316)
98 PF06379 RhaT: L-rhamnose-prot 88.3 7.1 0.00015 33.8 10.1 141 68-215 6-156 (344)
99 KOG1581 UDP-galactose transpor 87.6 3.1 6.7E-05 35.3 7.3 137 70-215 15-158 (327)
100 KOG2922 Uncharacterized conser 85.1 0.36 7.8E-06 41.1 0.7 118 67-212 19-136 (335)
101 KOG1444 Nucleotide-sugar trans 84.4 25 0.00055 30.1 12.1 134 71-211 14-148 (314)
102 KOG1442 GDP-fucose transporter 81.4 2.5 5.4E-05 35.4 4.2 53 157-209 119-171 (347)
103 KOG3912 Predicted integral mem 78.6 13 0.00028 31.4 7.5 68 146-213 92-159 (372)
104 KOG2766 Predicted membrane pro 76.3 0.16 3.4E-06 41.9 -4.1 71 143-213 81-151 (336)
105 COG1742 Uncharacterized conser 74.3 4.2 9.2E-05 28.6 3.0 40 24-63 67-106 (109)
106 PF02694 UPF0060: Uncharacteri 73.7 2.6 5.7E-05 29.8 2.0 39 24-62 66-104 (107)
107 PRK02237 hypothetical protein; 73.6 2.6 5.6E-05 29.9 1.9 39 24-62 68-106 (109)
108 PRK02237 hypothetical protein; 71.8 3.9 8.4E-05 29.1 2.4 38 176-213 69-106 (109)
109 PF04342 DUF486: Protein of un 71.4 3.1 6.8E-05 29.4 1.9 29 181-209 77-105 (108)
110 PF05297 Herpes_LMP1: Herpesvi 70.8 1.4 3E-05 36.9 0.0 97 10-107 44-144 (381)
111 PF02694 UPF0060: Uncharacteri 67.6 4.3 9.4E-05 28.8 1.9 37 177-213 68-104 (107)
112 PRK15432 autoinducer 2 ABC tra 67.5 22 0.00048 31.1 6.8 23 194-216 288-310 (344)
113 PRK13108 prolipoprotein diacyl 66.6 6.8 0.00015 35.6 3.5 25 192-216 254-278 (460)
114 TIGR02865 spore_II_E stage II 60.8 1.5E+02 0.0033 29.1 11.7 45 15-59 10-54 (764)
115 COG3169 Uncharacterized protei 58.0 9.9 0.00021 26.5 2.3 37 174-210 73-113 (116)
116 PF06123 CreD: Inner membrane 56.4 1.6E+02 0.0034 26.8 10.8 73 24-96 306-378 (430)
117 PF04342 DUF486: Protein of un 55.7 7.9 0.00017 27.4 1.5 30 30-59 77-106 (108)
118 COG3247 HdeD Uncharacterized c 51.7 1.2E+02 0.0026 24.0 10.2 43 171-213 132-178 (185)
119 PRK11715 inner membrane protei 45.0 2.4E+02 0.0052 25.6 10.6 62 35-96 323-384 (436)
120 PF15330 SIT: SHP2-interacting 44.1 71 0.0015 22.8 5.0 7 235-241 44-50 (107)
121 COG5070 VRG4 Nucleotide-sugar 43.2 1.9E+02 0.0041 23.8 8.4 60 157-216 85-144 (309)
122 PRK02935 hypothetical protein; 43.2 48 0.001 23.5 3.8 26 192-217 40-65 (110)
123 PF06379 RhaT: L-rhamnose-prot 42.9 2.3E+02 0.005 24.8 11.8 82 8-89 92-193 (344)
124 PF15471 TMEM171: Transmembran 42.8 16 0.00034 30.5 1.6 24 193-216 160-183 (319)
125 KOG1583 UDP-N-acetylglucosamin 42.1 14 0.00031 31.1 1.3 67 151-217 75-142 (330)
126 TIGR00939 2a57 Equilibrative N 40.0 1.9E+02 0.0041 26.2 8.3 18 196-213 178-195 (437)
127 PF05977 MFS_3: Transmembrane 38.7 3.3E+02 0.0071 25.4 11.3 25 163-187 343-367 (524)
128 COG4657 RnfA Predicted NADH:ub 37.6 34 0.00073 26.3 2.6 17 35-51 91-107 (193)
129 PF05961 Chordopox_A13L: Chord 37.5 36 0.00077 21.9 2.3 20 196-215 6-25 (68)
130 PF06365 CD34_antigen: CD34/Po 37.4 37 0.00079 27.2 2.9 18 200-217 112-129 (202)
131 PRK06638 NADH:ubiquinone oxido 36.0 2.2E+02 0.0048 22.6 10.9 25 181-205 133-157 (198)
132 COG3169 Uncharacterized protei 35.0 16 0.00035 25.5 0.5 30 30-59 84-113 (116)
133 PF15102 TMEM154: TMEM154 prot 34.5 23 0.0005 26.7 1.3 18 197-214 66-83 (146)
134 PF07444 Ycf66_N: Ycf66 protei 34.3 40 0.00087 22.9 2.3 24 191-214 4-27 (84)
135 TIGR00803 nst UDP-galactose tr 31.8 53 0.0012 26.3 3.2 46 170-215 8-53 (222)
136 COG3086 RseC Positive regulato 31.4 73 0.0016 24.1 3.4 23 165-187 73-95 (150)
137 PRK12437 prolipoprotein diacyl 31.0 34 0.00073 28.8 1.9 32 13-44 17-49 (269)
138 KOG1443 Predicted integral mem 30.6 1.9E+02 0.004 25.1 6.1 56 157-212 101-156 (349)
139 KOG4812 Golgi-associated prote 30.5 1.5E+02 0.0033 24.5 5.3 20 192-211 219-238 (262)
140 TIGR00910 2A0307_GadC glutamat 30.0 60 0.0013 30.0 3.5 10 204-213 451-460 (507)
141 KOG3762 Predicted transporter 29.4 1.6E+02 0.0034 27.8 5.9 21 195-215 529-551 (618)
142 PF08507 COPI_assoc: COPI asso 27.3 81 0.0018 23.3 3.2 30 181-211 75-104 (136)
143 TIGR00892 2A0113 monocarboxyla 26.3 4.8E+02 0.01 23.4 10.1 14 195-208 402-415 (455)
144 PF03348 Serinc: Serine incorp 26.0 5E+02 0.011 23.6 11.5 24 192-215 283-306 (429)
145 PRK00052 prolipoprotein diacyl 26.0 58 0.0013 27.3 2.5 22 192-213 237-258 (269)
146 TIGR00822 EII-Sor PTS system, 25.9 4E+02 0.0087 22.4 12.5 22 25-46 31-52 (265)
147 PF04246 RseC_MucC: Positive r 25.8 63 0.0014 23.8 2.4 17 171-187 72-88 (135)
148 PF09656 PGPGW: Putative trans 25.5 88 0.0019 19.2 2.5 44 45-93 5-48 (53)
149 PHA03049 IMV membrane protein; 25.5 79 0.0017 20.3 2.3 20 196-215 6-25 (68)
150 PF14851 FAM176: FAM176 family 25.3 82 0.0018 24.1 2.9 9 199-207 33-41 (153)
151 CHL00196 psbY photosystem II p 25.2 1.1E+02 0.0024 17.1 2.6 21 70-90 7-27 (36)
152 PF15345 TMEM51: Transmembrane 25.2 1.1E+02 0.0025 24.9 3.8 22 198-219 67-88 (233)
153 PRK10655 potE putrescine trans 24.5 3E+02 0.0065 24.6 7.0 22 196-217 410-431 (438)
154 TIGR00905 2A0302 transporter, 24.5 5E+02 0.011 23.6 8.5 21 195-215 417-437 (473)
155 PRK10644 arginine:agmatin anti 24.3 3E+02 0.0065 24.7 7.0 42 174-215 388-429 (445)
156 PF04277 OAD_gamma: Oxaloaceta 23.9 1.6E+02 0.0034 19.3 3.9 11 197-207 9-19 (79)
157 KOG2592 Tumor differentially e 22.7 1.1E+02 0.0024 27.2 3.6 22 191-212 295-316 (426)
158 KOG4812 Golgi-associated prote 22.5 3.2E+02 0.007 22.6 5.9 31 135-165 221-251 (262)
159 PF11044 TMEMspv1-c74-12: Plec 22.5 78 0.0017 18.5 1.8 17 193-209 3-19 (49)
160 PLN00028 nitrate transmembrane 21.9 6E+02 0.013 23.0 12.0 13 198-211 418-430 (476)
161 PF15055 DUF4536: Domain of un 21.9 63 0.0014 19.3 1.4 20 197-216 8-27 (47)
162 PF12768 Rax2: Cortical protei 21.6 89 0.0019 26.5 2.8 12 201-212 243-254 (281)
163 PF05545 FixQ: Cbb3-type cytoc 21.2 84 0.0018 18.6 1.9 16 200-215 18-33 (49)
164 PRK10862 SoxR reducing system 21.1 1.2E+02 0.0027 23.0 3.2 6 177-182 85-90 (154)
165 PF05977 MFS_3: Transmembrane 21.0 6.8E+02 0.015 23.3 8.8 11 46-56 255-265 (524)
166 KOG1582 UDP-galactose transpor 20.9 83 0.0018 26.7 2.3 51 15-65 286-336 (367)
167 PF11446 DUF2897: Protein of u 20.9 1.6E+02 0.0036 18.1 3.1 18 200-217 8-25 (55)
168 PF03601 Cons_hypoth698: Conse 20.7 5.5E+02 0.012 22.1 7.4 48 45-92 60-108 (305)
169 PF11628 TCR_zetazeta: T-cell 20.5 1.7E+02 0.0036 16.0 2.9 27 19-45 6-32 (33)
170 COG5336 Uncharacterized protei 20.4 2E+02 0.0043 20.6 3.8 36 179-214 58-94 (116)
171 PRK11357 frlA putative fructos 20.2 6.3E+02 0.014 22.6 8.5 42 174-216 391-437 (445)
172 PLN02776 prenyltransferase 20.1 6E+02 0.013 22.3 14.2 37 157-194 115-151 (341)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=4e-30 Score=219.72 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=173.6
Q ss_pred eeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHH
Q 025040 3 IAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTS 82 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a 82 (259)
..++|.|++|++++++++++++.|+++++++++++|||++++++.+++++++|+++....+.+++..|++++++++++|+
T Consensus 79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a 158 (302)
T TIGR00817 79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFV 158 (302)
T ss_pred HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999998776777778889999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhc-cCcccccc--cCch-hHHHHHHHHHH-HHHHHHHHH
Q 025040 83 LQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYL-NGKFITTY--KMTS-GAILFIFLSCA-LAVFCNVSQ 157 (259)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~~~~~~~~~~-~~~~~~~~~ 157 (259)
+|.++.||..++.+.|+.+...|++..+.+.+++.....+... ........ .+.. ..+...+..+. +....+...
T Consensus 159 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (302)
T TIGR00817 159 SRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVA 238 (302)
T ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987755689999999999888888887765544211 00000010 0111 12222333333 344455667
Q ss_pred HHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 158 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 158 ~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
+.+++++||+++++.++++|++++++|++++||+++..+++|.++++.|+.+|++.|.
T Consensus 239 ~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 239 FMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999986543
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=5.2e-28 Score=210.07 Aligned_cols=209 Identities=19% Similarity=0.303 Sum_probs=177.6
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHHH
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQ 84 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~~ 84 (259)
..|.|+++++++++++++++.|+++++++++++|||++++++.+++++++|+.+...+|.++++.|++++++|+++++++
T Consensus 130 ~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~ 209 (350)
T PTZ00343 130 GAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLR 209 (350)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHhhc-----CCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCccc----ccc-cCc-hhHHHHHHHHHHHHHHH
Q 025040 85 QITIGSLQKKY-----SIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFI----TTY-KMT-SGAILFIFLSCALAVFC 153 (259)
Q Consensus 85 ~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~~~~~~~~~ 153 (259)
+++.|+..+++ +.++.+...+....+.+.+++..++.|........ ... .+. ...+..++.+++..+..
T Consensus 210 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~ 289 (350)
T PTZ00343 210 SIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLY 289 (350)
T ss_pred HHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 99999988654 35677777777888888888877655432100000 000 111 23444666778888888
Q ss_pred HHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 154 NVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 154 ~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
|.+.|.++++++|.++++.++++|++++++|++++||++|..+++|.++++.|+.+|++.
T Consensus 290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 988999999999999999999999999999999999999999999999999999999875
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.96 E-value=2.2e-28 Score=205.55 Aligned_cols=215 Identities=33% Similarity=0.476 Sum_probs=188.6
Q ss_pred ceeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHH
Q 025040 2 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLST 81 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~ 81 (259)
+..++|.|++++++++++++|++.|++++++++++.+|+.++..+.+++..+.|+.+.+..|.++|+.|+..++++.+..
T Consensus 96 ~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~ 175 (316)
T KOG1441|consen 96 SHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAF 175 (316)
T ss_pred HHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhcCCCHHHHHHhhhhHHHHHHH-HHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 025040 82 SLQQITIGSLQ--KKYSIGSFELLSKTAPIQAVSLL-VLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQY 158 (259)
Q Consensus 82 a~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (259)
++++++.+++. |+++.++.+++.++++.+.+.++ +.....|+... .......|+...+.. ++..++++..|...|
T Consensus 176 al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~sv~~f~~Nls~f 253 (316)
T KOG1441|consen 176 ALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLIL-LLNSVLAFLLNLSAF 253 (316)
T ss_pred HHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHH-HHHHHHHHHHHHHHH
Confidence 99999999999 46789999999999999888888 44433333211 111223454444434 444499999999999
Q ss_pred HHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhHHH
Q 025040 159 LCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEK 218 (259)
Q Consensus 159 ~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~~~ 218 (259)
++++++||++.++.+.+|.++.++.|+++|+++.++.+..|+++.++|+.+|++.+.+++
T Consensus 254 ~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 254 LVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred HHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999998876543
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.93 E-value=3e-25 Score=192.33 Aligned_cols=207 Identities=11% Similarity=0.122 Sum_probs=157.8
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHH------hccccChhhhhhhhheeecceeeeec-cc-------------
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWIL------HNKHYSKEVKMAVVVVVIGVGVCTIT-DV------------- 64 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~------~~~~~~~~~~~~~~l~~~Gv~l~~~~-~~------------- 64 (259)
+.+.|++|++++.++++.++.|++++++++++ +|||+++++++|++++++|+.++... +.
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~ 173 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF 173 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence 46789999999999999999999999999999 69999999999999999999886531 10
Q ss_pred ----------ccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccc
Q 025040 65 ----------KVN-AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTY 133 (259)
Q Consensus 65 ----------~~~-~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (259)
..+ ..|+.++++++++||+|++++|+..+++ .++.....+++.++.+.+.......+..... .+ ..
T Consensus 174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~ 250 (358)
T PLN00411 174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY-PAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS-VW-II 250 (358)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHhHHHHHHHHHHHHHHHHHHHHHccCCcc-cc-ee
Confidence 112 4599999999999999999999987754 2334556666655555555444433321000 00 11
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 134 KMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
.++...+ .+++.+++..+....+++++++.+|..+++..+++|+++.++|++++||++++.+++|+++++.|+++.++.
T Consensus 251 ~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 251 HFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred ccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 2333322 244444444455556778999999999999999999999999999999999999999999999999998764
Q ss_pred hh
Q 025040 214 VE 215 (259)
Q Consensus 214 ~~ 215 (259)
++
T Consensus 330 ~~ 331 (358)
T PLN00411 330 KA 331 (358)
T ss_pred hh
Confidence 43
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.93 E-value=3.7e-25 Score=188.29 Aligned_cols=206 Identities=18% Similarity=0.200 Sum_probs=173.8
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc---------ccchHHHHHHH
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV---------KVNAKGFLCAC 75 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~---------~~~~~G~~~~l 75 (259)
+.+.|++|++++.++++.++..+|+++++++++|+|+++.|++|++++++|+.++...|. +....|+++++
T Consensus 95 ~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l 174 (334)
T PF06027_consen 95 LVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLAL 174 (334)
T ss_pred HHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHH
Confidence 457899999999999999999999999999999999999999999999999998876652 23468999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025040 76 VAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNV 155 (259)
Q Consensus 76 ~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (259)
+++.+||++++++|+..++ .+..+...+...++.+...+....+|. ...+...|+...+.+.+..+++-+....
T Consensus 175 ~~a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~----~~i~~~~w~~~~~~~~v~~~~~lf~~y~ 248 (334)
T PF06027_consen 175 LGAILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAILER----SGIESIHWTSQVIGLLVGYALCLFLFYS 248 (334)
T ss_pred HHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHheeh----hhhhccCCChhhHHHHHHHHHHHHHHHH
Confidence 9999999999999998885 477888999988888877776665553 2344456666665565555555555555
Q ss_pred HHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhH
Q 025040 156 SQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 156 ~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
..-..++..+|+..++...+..+.+.+++++++|+++++..++|.+++++|+++|+..+++
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 5556789999999999999999999999999999999999999999999999999876543
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.92 E-value=7.4e-25 Score=187.15 Aligned_cols=213 Identities=21% Similarity=0.298 Sum_probs=183.4
Q ss_pred ceeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccc----c------chHHH
Q 025040 2 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK----V------NAKGF 71 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~----~------~~~G~ 71 (259)
+..++|.|++|+|.+++++.|++.|+++++++++++|||++++++.++++..+|+++....|.. . +..|+
T Consensus 77 ~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~ 156 (303)
T PF08449_consen 77 ASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGI 156 (303)
T ss_pred HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHH
Confidence 3467899999999999999999999999999999999999999999999999999998765531 1 12399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhh--hhhccCcccccccCchhHHHHHHHHHHH
Q 025040 72 LCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFV--DYYLNGKFITTYKMTSGAILFIFLSCAL 149 (259)
Q Consensus 72 ~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (259)
++.+++.++.+++.+++|++.++++.++.+.+++.+.++.+..++..... +...+. ..-...++..+..++..+++
T Consensus 157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~--~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 157 ILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSA--IRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH--HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888887776652 221111 11112344566788888888
Q ss_pred HHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhH
Q 025040 150 AVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
++..+...+.++++.+|++.+++..++.+.++++|+++|++++++.||+|.++++.|..+|.+.+++
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence 8888888888999999999999999999999999999999999999999999999999999887654
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.91 E-value=4e-23 Score=175.91 Aligned_cols=192 Identities=13% Similarity=0.070 Sum_probs=148.0
Q ss_pred cccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccc-----------cchHHHHHHHHHHH
Q 025040 11 MLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK-----------VNAKGFLCACVAVL 79 (259)
Q Consensus 11 ~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~-----------~~~~G~~~~l~a~l 79 (259)
++.+++.+.++.++.|+++.+++++++|||++++++.+++++++|++++..++.+ .+..|+++++++++
T Consensus 87 ~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~ 166 (295)
T PRK11689 87 TRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAF 166 (295)
T ss_pred ccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999998755421 23569999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 025040 80 STSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYL 159 (259)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
|||+|+++.||..++ .++...... .+...+.+...+ +. .. ...++...+..+++.++.+.+.+..+++
T Consensus 167 ~~A~~~v~~k~~~~~--~~~~~~~~~---~~~~~l~~~~~~-~~----~~--~~~~~~~~~~~l~~~~~~t~~~~~l~~~ 234 (295)
T PRK11689 167 IWAAYCNVTRKYARG--KNGITLFFI---LTALALWIKYFL-SP----QP--AMVFSLPAIIKLLLAAAAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHhhccCC--CCchhHHHH---HHHHHHHHHHHH-hc----Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997653 455543221 122222221111 11 11 1123344455555666666666777788
Q ss_pred HhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 160 CIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 160 ~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
++++.+|.+++...+++|+++++++++++||+++..+++|+++++.|+++.....
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999998876543
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.91 E-value=2.7e-23 Score=177.29 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=154.9
Q ss_pred eeeecc-cchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc---cccchHHHHHHHHHHHHHH
Q 025040 7 NFSLML-NSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAVLSTS 82 (259)
Q Consensus 7 n~al~~-~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~l~~a 82 (259)
+.+++| .+++.+.++.++.|+++.+++++++|||++++++++++++++|+.++..++ .+.++.|+.++++++++|+
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a 156 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWA 156 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 456677 688999999999999999999999999999999999999999999876542 2335679999999999999
Q ss_pred HHHHHHHHHHhhcC-CCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHH-HHHHHHH
Q 025040 83 LQQITIGSLQKKYS-IGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFC-NVSQYLC 160 (259)
Q Consensus 83 ~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (259)
.+.++.|+..++.+ .+......+.+..+.+.+.......+..... ......++...+..+++.++++... ...+++.
T Consensus 157 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~ 235 (299)
T PRK11453 157 CGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATM-IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTL 235 (299)
T ss_pred HHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhh-hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999765332 2233444455444433333332222221100 0001123445566666666665554 4445578
Q ss_pred hcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 161 IGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 161 l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
+++.++.+++.+.+++|+++.++|++++||+++..+++|.++++.|+++..+.++
T Consensus 236 l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 236 LGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999988765443
No 9
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-24 Score=173.84 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=192.6
Q ss_pred ceeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc---cccchHHHHHHHHHH
Q 025040 2 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAV 78 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~ 78 (259)
.+.++|++++|+++++|++-+++..+|++++.++++|||.+..-..+..+.+.|-.+-+..+ ...++.|.++++.|+
T Consensus 115 mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaS 194 (347)
T KOG1442|consen 115 MISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLAS 194 (347)
T ss_pred ehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999998877766 457899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 025040 79 LSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQY 158 (259)
Q Consensus 79 l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (259)
++.|+..++.|+.....+-.-+++.+|++..+.+..++...+... ++.....+..+..++|..+.++|++++..++...
T Consensus 195 l~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge-~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg 273 (347)
T KOG1442|consen 195 LAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE-FQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG 273 (347)
T ss_pred HHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch-HHHHcCcccchHHHHHHHHHHHHHHHHHhhheee
Confidence 999999999998665555667999999998888887777655422 1112222345667899999999999999999999
Q ss_pred HHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhHHHhhcc
Q 025040 159 LCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQRNA 222 (259)
Q Consensus 159 ~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~~~~~~~ 222 (259)
+-+|-+||+++++.+..+....+++++.+++|..+...|.|-++++.|...|++.++++++++.
T Consensus 274 ~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 274 WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999887765443
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.89 E-value=1e-22 Score=173.46 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=147.5
Q ss_pred eeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHH
Q 025040 4 AGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSL 83 (259)
Q Consensus 4 ~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~ 83 (259)
.+.+.|+++++++.++++.++.|+++++++++++|||+++++|.+++++++|++++..++.+. ..++++++++||+
T Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~~~a~ 163 (296)
T PRK15430 88 LLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAFSFAF 163 (296)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999876433322 1468889999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCch-hHHHHHHHHHHHHHHHHHHHHHHhc
Q 025040 84 QQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTS-GAILFIFLSCALAVFCNVSQYLCIG 162 (259)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (259)
|.++.|+..++...+......+....+..... +..+. .......+. ..+..++..++.+.+.+.+++++++
T Consensus 164 ~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~ 235 (296)
T PRK15430 164 YGLVRKKIAVEAQTGMLIETMWLLPVAAIYLF---AIADS-----STSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAAT 235 (296)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH---HHccC-----CcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999886432222333333343333322211 11111 000011111 1223444445556666777888999
Q ss_pred ccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 163 RFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 163 ~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
+.+|..++...+++|+++.++|++++||+++..+++|+++++.|+.+.....
T Consensus 236 ~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 236 RLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876554
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.89 E-value=2.5e-22 Score=167.97 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=155.1
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc-cccchHHHHHHHHHHHHHHH
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD-VKVNAKGFLCACVAVLSTSL 83 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~-~~~~~~G~~~~l~a~l~~a~ 83 (259)
+.+.|++|++++.++++.++.|+++++++.+++|||++++++.+++++++|+.++..++ .+.+..|+.++++++++|+.
T Consensus 63 ~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~ 142 (260)
T TIGR00950 63 LYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFAL 142 (260)
T ss_pred HHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999998876443 44567899999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHH-HHHHHHHHHHhc
Q 025040 84 QQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA-VFCNVSQYLCIG 162 (259)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 162 (259)
+.++.|+..++.+.++.....+.+..+.+.+.+.....+. . ...+...+..++..++++ .+....++++++
T Consensus 143 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 214 (260)
T TIGR00950 143 GTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP-----N---PQALSLQWGALLYLGLIGTALAYFLWNKGLT 214 (260)
T ss_pred HHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC-----C---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999876554445555555555555555444332221 1 112333444445455444 455566778999
Q ss_pred ccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHH
Q 025040 163 RFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGM 207 (259)
Q Consensus 163 ~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~ 207 (259)
+.++.+++...+++|+++.+++++++||+++..+++|.++++.|+
T Consensus 215 ~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 215 LVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999886
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.87 E-value=1.5e-21 Score=165.96 Aligned_cols=199 Identities=11% Similarity=0.016 Sum_probs=153.8
Q ss_pred eeeeee-cccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeec-ccccchHHHHHHHHHHHHHH
Q 025040 5 GMNFSL-MLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT-DVKVNAKGFLCACVAVLSTS 82 (259)
Q Consensus 5 ~~n~al-~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~-~~~~~~~G~~~~l~a~l~~a 82 (259)
+.+.+. ++++++.++++.++.|+++.+++.+ +|||++++++.+++++++|+.++..+ +.+.+..|++++++++++||
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a 163 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWA 163 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHH
Confidence 345566 8999999999999999999999986 69999999999999999999987643 33456689999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHH-HHHHHHHHHh
Q 025040 83 LQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAV-FCNVSQYLCI 161 (259)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 161 (259)
.+.+..|+..++ ++.....++...+...+.+.....+. .. ....+...+..+++.++.+. .....+++++
T Consensus 164 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~ 234 (292)
T PRK11272 164 FGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGE-----RL-TALPTLSGFLALGYLAVFGSIIAISAYMYLL 234 (292)
T ss_pred HHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCC-----cc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886532 33445566666665555544332221 11 01122334445555555543 4455566789
Q ss_pred cccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 162 GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 162 ~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
++.++...+...+++|+++.+++++++||+++..+++|.++++.|+++.++.
T Consensus 235 ~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 235 RNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654
No 13
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.86 E-value=7e-21 Score=155.31 Aligned_cols=208 Identities=20% Similarity=0.331 Sum_probs=185.5
Q ss_pred eeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHH
Q 025040 3 IAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTS 82 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a 82 (259)
+.++|.|++|++++.|++.|++.++|+.+++.++.-||+++.-...+.+.-+|+++.++.+.+++..|..++..++++.+
T Consensus 98 IGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sG 177 (349)
T KOG1443|consen 98 IGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSG 177 (349)
T ss_pred cccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC---CCHHHHHHhhhhHHHHHHHHHHHhhhhhccCccccccc-----CchhHHHHHHHHHHHHHHHH
Q 025040 83 LQQITIGSLQKKYS---IGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYK-----MTSGAILFIFLSCALAVFCN 154 (259)
Q Consensus 83 ~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 154 (259)
+...+.+.++++.+ -+|.+.++...+...+.+++....+|+.........+. ........+.+.|..+++.-
T Consensus 178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~ 257 (349)
T KOG1443|consen 178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLE 257 (349)
T ss_pred hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987644 57889999999888989998888888754332222111 12345567778888899999
Q ss_pred HHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHH
Q 025040 155 VSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIY 210 (259)
Q Consensus 155 ~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~ 210 (259)
++.+.++.+++..+.++.+..+-+.+.+++..+.+|+++...|.|..+++.|+..|
T Consensus 258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998
No 14
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.7e-21 Score=157.28 Aligned_cols=214 Identities=22% Similarity=0.290 Sum_probs=183.1
Q ss_pred eeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHH
Q 025040 4 AGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSL 83 (259)
Q Consensus 4 ~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~ 83 (259)
..+-.+++|+++++++++|+..|+++++.+..++|.++++..|.++..+.+|......+|.+++..|+.|++.++++.+.
T Consensus 92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~ 171 (314)
T KOG1444|consen 92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAA 171 (314)
T ss_pred HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccc-cccCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 025040 84 QQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFIT-TYKMTSGAILFIFLSCALAVFCNVSQYLCIG 162 (259)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (259)
+.++.|+..+..+...+.+.+|.++++...+.....+++++. ..... +...+...+..+.++++++++.+++.+++.+
T Consensus 172 ~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~ 250 (314)
T KOG1444|consen 172 FVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTR 250 (314)
T ss_pred HHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988877888899999999998888887776665432 11111 1122356778899999999999999999999
Q ss_pred ccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhHHH
Q 025040 163 RFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEK 218 (259)
Q Consensus 163 ~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~~~ 218 (259)
..|+++.++++..+...+.+-..+++|++.++..++|..+.++|.++|++.+++++
T Consensus 251 ~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 251 VNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred hccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 99999999999555555555555556668999999999999999999999886653
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=2e-20 Score=158.24 Aligned_cols=199 Identities=14% Similarity=0.156 Sum_probs=144.5
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc-ccchHHHHHHHHHHHHHHH
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV-KVNAKGFLCACVAVLSTSL 83 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~-~~~~~G~~~~l~a~l~~a~ 83 (259)
+.+.++++.+++.++.+.++.|+++.+++++++|||+++++|.|+.++++|+.++..++. ..+..|+.++++++++|+.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~ 158 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAI 158 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999998765432 3456788899999999999
Q ss_pred HHHHHHHHHhhcCCCHHH-HHHhhhhHHHHHH-HHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 025040 84 QQITIGSLQKKYSIGSFE-LLSKTAPIQAVSL-LVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCI 161 (259)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (259)
|.+..|+..++ .++.. ...+. ..+.+.. .+..+..... ...... ..+...+..+...++.+...+..+++.+
T Consensus 159 ~~i~~k~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~s~l~~~l~~~al 232 (281)
T TIGR03340 159 YSLSDKAAALG--VPAFYSALGYL-GIGFLAMGWPFLLLYLKR-HGRSMF--PYARQILPSATLGGLMIGGAYALVLWAM 232 (281)
T ss_pred hhhhccccccc--hhcccccHHHH-HHHHHHHHHHHHHHHHHH-hccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988865332 22211 11111 1111111 1221111100 000000 1111223344455555556666777899
Q ss_pred cccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHH
Q 025040 162 GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVI 209 (259)
Q Consensus 162 ~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~ 209 (259)
++.++...+...+++|+++.++|++++||+++..+++|+++++.|+++
T Consensus 233 ~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 233 TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999875
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.83 E-value=6.9e-20 Score=155.87 Aligned_cols=192 Identities=12% Similarity=0.074 Sum_probs=140.7
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc---cccchHHHHHHHHHHHHH
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAVLST 81 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~l~~ 81 (259)
+.+.+++|++++.++++..+.|+++.+++ +|++.+. ..+.++++|+.++...+ .+.+..|++++++++++|
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~ 160 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACW 160 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHH
Confidence 45678999999999999999999998886 3555544 45667789988875322 234567999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHH-HHHHHHHH
Q 025040 82 SLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVF-CNVSQYLC 160 (259)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 160 (259)
+.|.+..|+..++ .++... .+....+.+.+.+.....+. ...++...+...++.++++.. ....+++.
T Consensus 161 a~~~v~~r~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~ 229 (293)
T PRK10532 161 AIYILSGQRAGAE--HGPATV-AIGSLIAALIFVPIGALQAG--------EALWHWSILPLGLAVAILSTALPYSLEMIA 229 (293)
T ss_pred HHHHHHHHHHhcc--CCchHH-HHHHHHHHHHHHHHHHHccC--------cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998654 355554 34444444444333222110 111233333333445555443 44456789
Q ss_pred hcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 161 IGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 161 l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
+++.++..+++..+++|+++.++|++++||+++..+++|+++++.|+..+.+.
T Consensus 230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998754
No 17
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.1e-19 Score=143.24 Aligned_cols=208 Identities=13% Similarity=0.102 Sum_probs=173.1
Q ss_pred ceeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc-------ccchHHHHHH
Q 025040 2 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV-------KVNAKGFLCA 74 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~-------~~~~~G~~~~ 74 (259)
++.-+|.++||+|.++..+-+++-|+-++++++++.|++.+++++.++++.++|+++..+.+. ..-..|-++.
T Consensus 98 AMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL 177 (337)
T KOG1580|consen 98 AMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLL 177 (337)
T ss_pred HHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999876532 1224688999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHH
Q 025040 75 CVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCN 154 (259)
Q Consensus 75 l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (259)
+++--..++....++++.+.+..+...++.++++++.+.+-....+.+..++. ..-..-.+..++-+...++.+...+
T Consensus 178 ~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF--~yF~~RhP~~~~~l~l~ai~s~LGQ 255 (337)
T KOG1580|consen 178 ILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEF--FYFVQRHPYVFWDLTLLAIASCLGQ 255 (337)
T ss_pred HHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHH--HHHHHhccHHHHHHHHHHHHHHhhh
Confidence 99999999999999999888888888899999999887776555544322111 0001123455666777777788888
Q ss_pred HHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 155 VSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 155 ~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.+.|..+...+|.+.|++...+..++++.|+++|+.+++..||+|.++++.|...=.
T Consensus 256 ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 256 WFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 888888999999999999999999999999999999999999999999999977643
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=141.51 Aligned_cols=197 Identities=18% Similarity=0.177 Sum_probs=153.6
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHH-HHhccccChhhhhhhhheeecceeeeecccccc---hHHHHHHHHHHHH
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEW-ILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVN---AKGFLCACVAVLS 80 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~-l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~---~~G~~~~l~a~l~ 80 (259)
+.+.++++++++.++.+.++.|+++.++++ +++|||++++++.++++.+.|+.++..++...+ ..|+.+++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~ 165 (292)
T COG0697 86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALL 165 (292)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999997 777999999999999999999999988766543 5899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHH-hhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHH-HHHHHHH
Q 025040 81 TSLQQITIGSLQKKYSIGSFELLS-KTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAV-FCNVSQY 158 (259)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (259)
++++.+..|+.. +.++..... +... ...+......... .. .......+......++.+. .....++
T Consensus 166 ~a~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (292)
T COG0697 166 WALYTALVKRLS---RLGPVTLALLLQLL--LALLLLLLFFLSG----FG---APILSRAWLLLLYLGVFSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHH--HHHHHHHHHHhcc----cc---ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 345555554 3321 1111111111110 00 2233344455556666655 4666677
Q ss_pred HHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 159 LCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 159 ~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
+.+++.++...+...+++|+.+.+++++++||+++..+++|.++++.|+.+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999999999997654
No 19
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.75 E-value=1.9e-17 Score=127.44 Aligned_cols=143 Identities=30% Similarity=0.475 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCccccccc-----CchhH
Q 025040 70 GFLCACVAVLSTSLQQITIGSLQKK-----YSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYK-----MTSGA 139 (259)
Q Consensus 70 G~~~~l~a~l~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 139 (259)
|+++++.|.++.++++++.|+..++ .+.++.++..+.++.+.+.+++..++.|............ .+...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999999877 6899999999999999999999888877643221111111 14467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 140 ILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
+..++.+++.++..|++.+.+++++||++.++.+.+|.+..++.|+++|+|++|..+++|.++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999974
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2e-17 Score=135.21 Aligned_cols=213 Identities=16% Similarity=0.170 Sum_probs=179.4
Q ss_pred ceeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc---------ccchHHHH
Q 025040 2 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV---------KVNAKGFL 72 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~---------~~~~~G~~ 72 (259)
|-.|+.-|++|+|-++..+.+++--+-+++++.++.|+|++.++++...++-.|+.+....+. +.++.|+.
T Consensus 96 s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~ 175 (327)
T KOG1581|consen 96 SSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGIL 175 (327)
T ss_pred chHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHH
Confidence 345677799999999999999999999999999999999999999999999999998764321 25679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHH
Q 025040 73 CACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVF 152 (259)
Q Consensus 73 ~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (259)
+.....+..++.+..++++.+++++++++++++.+++..+........-+...+ ...-...++..+.-+++.+.++.+
T Consensus 176 Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~--av~F~~~hp~~~~Di~l~s~~gav 253 (327)
T KOG1581|consen 176 LLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLP--AVSFIKEHPDVAFDILLYSTCGAV 253 (327)
T ss_pred HHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCch--HHHHHHcChhHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999998887766655222111111 111113456667777888888888
Q ss_pred HHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhH
Q 025040 153 CNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 153 ~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
.+.+.|+.+++.++.+.+.+..++.++++.++.+.||.+++..||.|..+++.|+.+-.+.+++
T Consensus 254 GQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 254 GQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999999999999999999999999887766655
No 21
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.73 E-value=3.2e-17 Score=135.09 Aligned_cols=194 Identities=14% Similarity=0.082 Sum_probs=153.9
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccc-----------------cc
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK-----------------VN 67 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~-----------------~~ 67 (259)
+.++++++++++++++++.+..++++++.++++|+|++++||.++++.++|+.+...++.. ..
T Consensus 33 L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (244)
T PF04142_consen 33 LQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNP 112 (244)
T ss_pred HHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchh
Confidence 3457899999999999999999999999999999999999999999999999997643211 13
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHH
Q 025040 68 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 147 (259)
Q Consensus 68 ~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (259)
..|+.++++++++.++..++.|++.|+.+.+.+....+...++.+..++.....+.....+...-..++...|..++..+
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a 192 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA 192 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence 58999999999999999999999999888788877777777777776665444332111111111234555555656555
Q ss_pred HHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHH
Q 025040 148 ALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMIL 202 (259)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~l 202 (259)
+.|....+ .+|+.+...-+.......+++.++++++||.++|....+|..+
T Consensus 193 ~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 193 IGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 55555433 5799999999999999999999999999999999999999875
No 22
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=3.8e-17 Score=137.05 Aligned_cols=208 Identities=15% Similarity=0.073 Sum_probs=165.6
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc--------ccchHHHHHHHH
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV--------KVNAKGFLCACV 76 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~ 76 (259)
+.|.|+.+++++..+++.++.-+|+..++.++..||+++.|.+++.+.++|++++..+|. .....|.+++++
T Consensus 175 ~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~ 254 (416)
T KOG2765|consen 175 TSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALL 254 (416)
T ss_pred HHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999988743 234789999999
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHH
Q 025040 77 AVLSTSLQQITIGSLQKKY--SIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCN 154 (259)
Q Consensus 77 a~l~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (259)
+++.||+|.++.||...++ ++|...+.++..++.++.+.+...+.+.. .......+...++...++.+.+..+...
T Consensus 255 sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~--~~e~F~lP~~~q~~~vv~~~ligtvvSD 332 (416)
T KOG2765|consen 255 SALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF--GEERFELPSSTQFSLVVFNNLIGTVVSD 332 (416)
T ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh--ccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence 9999999999999877554 56766666666555555555444333322 1111122223333334444444456677
Q ss_pred HHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 155 VSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 155 ~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
+.+.++.--++|+.+++...+....+.+...++=+.++|+.+++|.+.+++|.+..++..
T Consensus 333 ylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 333 YLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 888888888999999999999999999999999999999999999999999999987654
No 23
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.72 E-value=2.6e-17 Score=128.89 Aligned_cols=210 Identities=19% Similarity=0.284 Sum_probs=183.1
Q ss_pred eeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccc--------cchHHHHHHHHHH
Q 025040 7 NFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK--------VNAKGFLCACVAV 78 (259)
Q Consensus 7 n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~--------~~~~G~~~~l~a~ 78 (259)
--++||++++.|++.++++.+.++..+.+++|.|.+..+..+..+++..-+...++|.+ .+ .|++|+...+
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nc 164 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNC 164 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhh
Confidence 45899999999999999999999999999999999999999999999998888888763 23 5999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 025040 79 LSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQY 158 (259)
Q Consensus 79 l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (259)
+..+.+-...|+..+-.+...++.++|.+..+...++.+..++|.+-.++. ..+........++++|+++++.+++.-
T Consensus 165 lssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~--annl~~d~l~am~ISgl~svgiSy~sa 242 (309)
T COG5070 165 LSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNL--ANNLSVDSLMAMFISGLCSVGISYCSA 242 (309)
T ss_pred HhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchh--hcCCChHHHHHHHHHHHHHhhhhhccc
Confidence 999999999998776666777899999999999998888888876533322 123444556688999999999999999
Q ss_pred HHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhHHHh
Q 025040 159 LCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQ 219 (259)
Q Consensus 159 ~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~~~~ 219 (259)
|+++-++.++.++++.++..-..+.|.++|||+.+...+..+.+-..+.++|..++.++++
T Consensus 243 WcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 243 WCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred eeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988765443
No 24
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.9e-16 Score=127.79 Aligned_cols=212 Identities=17% Similarity=0.266 Sum_probs=174.5
Q ss_pred eeeeeeecc-cchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeec---ccc--------------
Q 025040 4 AGMNFSLML-NSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT---DVK-------------- 65 (259)
Q Consensus 4 ~~~n~al~~-~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~---~~~-------------- 65 (259)
.++|.++++ ++.+..-+.|+-.++-++++++++.|+|.+.+|+.++++..+|+++.... |..
T Consensus 79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~ 158 (330)
T KOG1583|consen 79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSD 158 (330)
T ss_pred eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCccccc
Confidence 578999976 49999999999999999999999999999999999999999999997642 111
Q ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHH-hhhhh---ccCccc--cccc-Cc
Q 025040 66 VN--AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGP-FVDYY---LNGKFI--TTYK-MT 136 (259)
Q Consensus 66 ~~--~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~--~~~~-~~ 136 (259)
.- ..|+.+..++.+..|...++++..-++++-|+-+.++|.+.......+++.- ....+ ...+.. .... .-
T Consensus 159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~v 238 (330)
T KOG1583|consen 159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKV 238 (330)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccc
Confidence 11 2688999999999999999999999999999999999999887777766642 11111 111100 0111 13
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 137 SGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
+..|++++.+.+.+++..-..|.+..++++.+++++-++++.++.++|+..|+.+++++.|+|.+++..|..+|.....
T Consensus 239 P~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 239 PSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677889999999999877778888999999999999999999999999999999999999999999999999976554
No 25
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.70 E-value=6.9e-17 Score=130.56 Aligned_cols=213 Identities=16% Similarity=0.202 Sum_probs=169.8
Q ss_pred eeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc----------ccchHHHH
Q 025040 3 IAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV----------KVNAKGFL 72 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~----------~~~~~G~~ 72 (259)
....|.++.+++++.+|+++....+|+.+++.-+++++++.+||+++.....|++.+...|. +....|+.
T Consensus 100 sslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdl 179 (372)
T KOG3912|consen 100 SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDL 179 (372)
T ss_pred hHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhH
Confidence 34578899999999999999999999999999999999999999999999999999876542 23358999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccC--------cccccc-------cCch
Q 025040 73 CACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNG--------KFITTY-------KMTS 137 (259)
Q Consensus 73 ~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-------~~~~ 137 (259)
+++++.+..|.+.++.+|..++++++|.+...|..++|.+.+-..+..+.....+ ..++++ +-.+
T Consensus 180 lIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p 259 (372)
T KOG3912|consen 180 LIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESP 259 (372)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999866554443332221111 001111 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 138 GAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
..........+.-.+.|+......+..|+++-.++..++..+-.+++..+..|.+...|+.|.++.+.|+.+|+..-+
T Consensus 260 ~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~il~ 337 (372)
T KOG3912|consen 260 SLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQILF 337 (372)
T ss_pred hhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222233333444677777889999999999999999999999999999999999999999999999999986543
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.9e-16 Score=131.79 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=164.4
Q ss_pred eeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc-----------cccchHHHHHH
Q 025040 6 MNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD-----------VKVNAKGFLCA 74 (259)
Q Consensus 6 ~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~-----------~~~~~~G~~~~ 74 (259)
..+++.+.+++++++...+-.+.|+++.++++|||.+++||.++++.++|+.++..+. .+..+.|...+
T Consensus 109 ~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~av 188 (345)
T KOG2234|consen 109 QYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAV 188 (345)
T ss_pred HHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHH
Confidence 3467889999999999999999999999999999999999999999999999976221 12356899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHH
Q 025040 75 CVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCN 154 (259)
Q Consensus 75 l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (259)
+.+|++.++..++.+++.|+.+.+.+........+|.+..+......+.........-..|+...|..++..++.|...+
T Consensus 189 l~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs 268 (345)
T KOG2234|consen 189 LVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVS 268 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccchhHH
Confidence 99999999999999999998887777777666666666655554433321110111112466667777777777777665
Q ss_pred HHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 155 VSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 155 ~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
+ .+|+.+....+....+..+++.+.|+.++|-++|....+|..+++.++.+|+..++
T Consensus 269 ~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 269 L----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred H----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 5 36888888888888889999999999999999999999999999999999984443
No 27
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.68 E-value=6.4e-16 Score=131.14 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=148.0
Q ss_pred eeeeeeecccchhHHHHHhh-hhHHHHHHHHHHHhccccChhh----hhhhhheeecceeeeecccc-------cc-hHH
Q 025040 4 AGMNFSLMLNSVGFYQISKL-SMIPVVCVMEWILHNKHYSKEV----KMAVVVVVIGVGVCTITDVK-------VN-AKG 70 (259)
Q Consensus 4 ~~~n~al~~~~~~~~~~l~~-~~p~~~~l~~~l~~~~~~~~~~----~~~~~l~~~Gv~l~~~~~~~-------~~-~~G 70 (259)
.+...++++++++.+..+.+ +.+++..+++.+++|||.++++ +++++++++|+++....+.+ .+ ..|
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~G 153 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKG 153 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhH
Confidence 45667899999999988888 8888999999999999999999 99999999999998654321 33 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHH
Q 025040 71 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 150 (259)
Q Consensus 71 ~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
++++++++++|+.|.+..|+. +.+|.+..+.+..--.+......+... .. .++.....+..+..|+..
T Consensus 154 i~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 154 ILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGHI---LA-----KPLKKYAILLNILPGLMW 221 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHHh---cc-----cchHHHHHHHHHHHHHHH
Confidence 999999999999999999864 367777744443211111111111110 00 111222223334466665
Q ss_pred HHHHHHHHHHhc-ccCceeeehhhhhhhHHHHhhhhhhcCCcccccch----hhHHHHHHHHHHHHH
Q 025040 151 VFCNVSQYLCIG-RFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNI----SGMILAVVGMVIYSW 212 (259)
Q Consensus 151 ~~~~~~~~~~l~-~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~----~G~~lii~g~~~~~~ 212 (259)
...+..++...+ +.++.+.+++.+.+|+.+++++++++||+.+..|+ +|.++++.|+.+...
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 555555556778 99999999999999999999999999999999999 999999999987543
No 28
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.67 E-value=2.8e-15 Score=122.60 Aligned_cols=198 Identities=12% Similarity=0.047 Sum_probs=152.2
Q ss_pred eecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHHHHHHH
Q 025040 9 SLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITI 88 (259)
Q Consensus 9 al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~~~v~~ 88 (259)
|.++-.+=.+++-++..|++.++++.+++|||+++.||+++.++.+||........+++|....++ ++|++|....
T Consensus 92 Avn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la----~sf~~Ygl~R 167 (293)
T COG2962 92 AVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALA----LSFGLYGLLR 167 (293)
T ss_pred ecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHHHHHHH
Confidence 333434456777788999999999999999999999999999999999998877778888776554 4899998776
Q ss_pred HHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHhcccCcee
Q 025040 89 GSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATS 168 (259)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (259)
|+ .++|+.+-...+...-....+......+...+ .....+...+.+++..|..+.+.=......-++++=.+
T Consensus 168 K~----~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~----~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~ 239 (293)
T COG2962 168 KK----LKVDALTGLTLETLLLLPVALIYLLFLADSGQ----FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLST 239 (293)
T ss_pred Hh----cCCchHHhHHHHHHHHhHHHHHHHHHHhcCch----hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHH
Confidence 43 46788888777765544444444433332111 11123445556777777777665444445789999999
Q ss_pred eehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhHHH
Q 025040 169 FQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEK 218 (259)
Q Consensus 169 ~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~~~ 218 (259)
.++++|.+|....+++++++||+++..+....+.+..|..+|+...-+++
T Consensus 240 ~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 240 LGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765443
No 29
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.67 E-value=3.9e-16 Score=130.31 Aligned_cols=171 Identities=11% Similarity=0.011 Sum_probs=119.6
Q ss_pred eeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHH
Q 025040 4 AGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSL 83 (259)
Q Consensus 4 ~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~ 83 (259)
.+.+.|+++++++.++++.++.|+|+++++++++|||++++++++++++++|++++..++.+.+ .+++++++||+.
T Consensus 85 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~ 160 (256)
T TIGR00688 85 WLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTA 160 (256)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHH
Confidence 3557799999999999999999999999999999999999999999999999998754332222 467889999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025040 84 QQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGR 163 (259)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (259)
|.+..|+..++ +..+..... ........... ....... .... .....|..++..++++.+....+.+.+++
T Consensus 161 ~~i~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~-~~~~~~~---~~~~-~~~~~~~~l~~~g~~t~i~~~l~~~a~~~ 231 (256)
T TIGR00688 161 YGLIRKALKNT---DLAGFCLET-LSLMPVAIYYL-LQTDFAT---VQQT-NPFPIWLLLVLAGLITGTPLLAFVIAANR 231 (256)
T ss_pred HHHHHhhcCCC---CcchHHHHH-HHHHHHHHHHH-HHhccCc---cccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999886532 222222111 11111111111 1111100 0000 11123445555566666677777889999
Q ss_pred cCceeeehhhhhhhHHHHhhhhhh
Q 025040 164 FSATSFQVLGHMKTVCVLTLGWLL 187 (259)
Q Consensus 164 ~~~~~~si~~~~~pv~~~~~s~~~ 187 (259)
.++.+++...+++|+++.+++++.
T Consensus 232 ~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 232 LPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999775
No 30
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.65 E-value=3.8e-17 Score=131.24 Aligned_cols=201 Identities=13% Similarity=0.119 Sum_probs=156.6
Q ss_pred eeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc--------------ccch
Q 025040 3 IAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV--------------KVNA 68 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~--------------~~~~ 68 (259)
+....+|++|++.+.+.++..+.|+|+.++++.++|||+++.+.++..+.+.|++++.-+.. +.+.
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 44567899999999999999999999999999999999999999999999999999864321 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHH
Q 025040 69 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 148 (259)
Q Consensus 69 ~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
.|...++.+.+.-|.-.++.|++.| +.|....+.|.+..+++..++...... ..+.+.....+++.+..|+
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig-------~~~lP~cgkdr~l~~~lGv 261 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIG-------AVQLPHCGKDRWLFVNLGV 261 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhcc-------ceecCccccceEEEEEehh
Confidence 6888888888888877888888766 345555555665555554444332221 1122233344567777888
Q ss_pred HHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 149 LAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
++++.+......+++=.+-..++..+.+-+++.++-+++||+.++++.|.|+++++.+.++...
T Consensus 262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 8999888877777776666678999999999999999999999999999999998888877543
No 31
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.5e-15 Score=122.26 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=176.1
Q ss_pred ceeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc----ccchHHHHHHHHH
Q 025040 2 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV----KVNAKGFLCACVA 77 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~----~~~~~G~~~~l~a 77 (259)
+..++|-|+.|++.++..+.+++--+-+++.+.++.++|.....+.+..++.+|+++....|. ++|..|+.++-.|
T Consensus 119 tmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgA 198 (367)
T KOG1582|consen 119 TMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGA 198 (367)
T ss_pred ccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999876654 5788999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025040 78 VLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQ 157 (259)
Q Consensus 78 ~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (259)
-++.|+-...+++.++..+-+.-++.+|....|.+.++.........+..... -...+.......++.+..+++...+.
T Consensus 199 Ll~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~f-caehp~~tyGy~~~~s~~gylG~~~V 277 (367)
T KOG1582|consen 199 LLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTF-CAEHPVRTYGYAFLFSLAGYLGIVFV 277 (367)
T ss_pred HHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHH-HHhCcHhHHHHHHHHHHHhHhhHHHH
Confidence 99999999999999988888888888888877877766555444332211110 01112224456667777788777777
Q ss_pred HHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 158 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 158 ~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
..+++..++..+..+++.+..+++++|+++|..|+|.+..-|..+++.|+++-.+.+
T Consensus 278 LalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 278 LALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 778899999999999999999999999999999999999999999999999866544
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.58 E-value=5.4e-15 Score=118.19 Aligned_cols=196 Identities=17% Similarity=0.194 Sum_probs=156.3
Q ss_pred eeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeeccc--------ccchHHHHHHHHHHH
Q 025040 8 FSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV--------KVNAKGFLCACVAVL 79 (259)
Q Consensus 8 ~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~a~l 79 (259)
-|.||++....+++.+-..+.+++++|+++|.|.++.|+.|+++++.|++++...|. +....|++++++++-
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GAT 176 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGAT 176 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecce
Confidence 488999999999999999999999999999999999999999999999999887653 234589999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 025040 80 STSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYL 159 (259)
Q Consensus 80 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
+||+.++..+.+.| +.|..+++....++|.+...+- +..+. +......|+.....++. ...+-++.....-.
T Consensus 177 lYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~----~~~~tl~w~~~i~~yl~-f~L~MFllYsl~pi 248 (336)
T KOG2766|consen 177 LYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFER----HHVSTLHWDSAIFLYLR-FALTMFLLYSLAPI 248 (336)
T ss_pred eeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-Hhhhc----cceeeEeehHHHHHHHH-HHHHHHHHHHhhHH
Confidence 99999999999888 5688999999988888877766 33332 22333445433322222 33333333333345
Q ss_pred HhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 160 CIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 160 ~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
+++..+++..++.......++.+. ..||-+.+|...+..+.+..|..+|..+
T Consensus 249 l~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 249 LIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred heecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 678899999999999999999887 7788889999999999999999999543
No 33
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.44 E-value=4.6e-13 Score=107.17 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=139.4
Q ss_pred eeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc---cccchHHHHHHHHHHHHHHHH
Q 025040 8 FSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAVLSTSLQ 84 (259)
Q Consensus 8 ~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~l~~a~~ 84 (259)
.|++.+|.+++..+-.+.|+.+.+++ .+|.. ..+-+.+++.|..++...+ .+.|+.|+.+++.++.||+.|
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~--d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~Y 163 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLS----SRRLR--DFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALY 163 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHh----ccchh--hHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHH
Confidence 47888999999999999999877665 34443 4444555667777765433 457899999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHH-HHHhcc
Q 025040 85 QITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQ-YLCIGR 163 (259)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 163 (259)
.+..||.-+ ..+-.+-....+..+.+..+++..... ...-+++......+..++++....|+. ..++++
T Consensus 164 Iv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~a--------g~~l~~p~ll~laLgvavlSSalPYsLEmiAL~r 233 (292)
T COG5006 164 IVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQA--------GPALFSPSLLPLALGVAVLSSALPYSLEMIALRR 233 (292)
T ss_pred HHHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhc--------chhhcChHHHHHHHHHHHHhcccchHHHHHHHhh
Confidence 999998764 234444455555555555555433211 112344455555555666665554443 457999
Q ss_pred cCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 164 FSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 164 ~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
.++-+.+++..+||.++.+.|++++||.+|..||+|++.++.+..-.++.
T Consensus 234 lp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 234 LPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred CChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999998866554
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.39 E-value=4.2e-13 Score=109.69 Aligned_cols=193 Identities=13% Similarity=0.072 Sum_probs=131.1
Q ss_pred cchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeec--------------------cc-------c
Q 025040 13 NSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT--------------------DV-------K 65 (259)
Q Consensus 13 ~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~--------------------~~-------~ 65 (259)
+++|.....++..++++++.++.+.++|.+..|+++..+...|+...... +. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 57788899999999999999999999999999999999999998742111 11 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhh-hccCcccccccCchhHHHHHH
Q 025040 66 VNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDY-YLNGKFITTYKMTSGAILFIF 144 (259)
Q Consensus 66 ~~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 144 (259)
..+.|..+.+.++++.++..++.++..|+++...+.-......++.+.... ...... ........-..++...+..++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFS-VLLWSDGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHH-HHhhcccchhhccCcccCCchHHHHHHH
Confidence 345788888888888899999999877654443332222222222221111 111110 000000001122333333333
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHH
Q 025040 145 LSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIY 210 (259)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~ 210 (259)
. ......+..+.+++.++...++...++++++.++|+++|||+++..+++|..+++.|+.+|
T Consensus 161 ~----~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 L----NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred H----HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 3 3333334556799999999999999999999999999999999999999999999998765
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.34 E-value=2.2e-11 Score=87.62 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHH
Q 025040 71 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 150 (259)
Q Consensus 71 ~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
.++++++++++++..++.|.-.+ ++||-......+......+......... .......+...|.+++++|+.+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~-----~~~~~~~~~k~~lflilSGla~ 77 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGN-----WQAGGEIGPKSWLFLILSGLAG 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCc-----eecccccCcceehhhhHHHHHH
Confidence 57899999999999999988666 5677666666665555555555444332 1112224556668999999999
Q ss_pred HHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHH
Q 025040 151 VFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIY 210 (259)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~ 210 (259)
....+++|.+++.-.+..+..+.-+.|+++.++|+++++|+++..+|+|.+++.+|.++.
T Consensus 78 glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 78 GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 889999999999999999999999999999999999999999999999999999998764
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.22 E-value=5.2e-11 Score=87.89 Aligned_cols=124 Identities=21% Similarity=0.349 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHH-HHHHHHHH
Q 025040 79 LSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL-AVFCNVSQ 157 (259)
Q Consensus 79 l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 157 (259)
++||.+.++.|+..++ .|+.....+....+.+ +++.....+... ....+...+......+.. ....+...
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP------FKNLSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc------ccCCChhhhhhhhHhhccceehHHHHH
Confidence 4688999999998774 7999999999888876 555554443211 122333333344444444 46666777
Q ss_pred HHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 158 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 158 ~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
++.+++.++...+...+++|+++.++++++++|+++..+++|+++++.|+++..
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999998754
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.04 E-value=2.1e-09 Score=83.33 Aligned_cols=201 Identities=9% Similarity=0.081 Sum_probs=140.5
Q ss_pred eeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccc--cchHHHHHHHHHHHHHHHHH
Q 025040 8 FSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK--VNAKGFLCACVAVLSTSLQQ 85 (259)
Q Consensus 8 ~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~--~~~~G~~~~l~a~l~~a~~~ 85 (259)
.+++.++++.++.+.++.--|+.+++++.+|+|+...++++.++++.|++++.+.|.. .++.|+.+++.++...|+|.
T Consensus 72 ~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aAlYK 151 (290)
T KOG4314|consen 72 LALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAALYK 151 (290)
T ss_pred HHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999999999999999999999999987754 57899999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHH-HhhhhhccCc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025040 86 ITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLG-PFVDYYLNGK-FITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGR 163 (259)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (259)
+..|+...+.+. -+...+++..|.+=+.+.. |...-.+++. .+.++.. ..|..+..........|+....-+..
T Consensus 152 V~FK~~iGnAn~--Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~--~PWG~l~G~A~L~lAFN~~iN~GiaL 227 (290)
T KOG4314|consen 152 VLFKMFIGNANF--GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAA--APWGCLCGAAGLSLAFNFLINFGIAL 227 (290)
T ss_pred HHHHHHhccCcc--hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhh--CCchhhhhHHHHHHHHhhheeehhhh
Confidence 999998875444 3344455555555443332 1111111111 1111111 12233333333444455544444566
Q ss_pred cCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 164 FSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 164 ~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
+.|...|+-.......-.....++=+-..+.....|.+++.+|..+.-.
T Consensus 228 ~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 228 LNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred hchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 6777777666655555556665554457899999999999999887644
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.98 E-value=7.1e-09 Score=86.55 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCccccccc-C-chhHHHHHHHH
Q 025040 69 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYK-M-TSGAILFIFLS 146 (259)
Q Consensus 69 ~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 146 (259)
.|..+.++++++|+...+..|.. . +.+|.++.++...++.+.+.+......... . ...... . ....+......
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWA-A-LIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchH-H-HHHHHhCcccchHHHHHHHH
Confidence 48899999999999999999863 3 489999999998887766655443321100 0 000111 1 11223345566
Q ss_pred HHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHH
Q 025040 147 CALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIY 210 (259)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~ 210 (259)
++.......+.++.++++++..++++.++.|+++.++++++++|+++..+++|.++.++|+.+.
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 6666667777788999999999999999999999999999999999999999999999998765
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.91 E-value=2.6e-08 Score=84.99 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHH
Q 025040 66 VNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFL 145 (259)
Q Consensus 66 ~~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (259)
....|.++.++++++|+...+..|.. . +.+|.++..+...++.+.+++........ . .......+...+...+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 78 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQW-S--YLKTLIQTPQKIFMLAV 78 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccH-H--HHHHHHcCHHHHHHHHH
Confidence 34579999999999999999999753 2 58999999999888776665443221110 0 00000012222223344
Q ss_pred HHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 146 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.++.....+.+.++.++++++..++++.++.|+++.++++++++|+++..+++|+++.++|+++..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 555555567778889999999999999999999999999999999999999999999999988754
No 40
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.84 E-value=6.7e-08 Score=81.81 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHH
Q 025040 71 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 150 (259)
Q Consensus 71 ~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
..+.+++++++|...++.|+..++ .++. ..+....+.+.+.+...... ....+.. .....+..++..++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~ 73 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYL---AQVGWSR--LPATFWLLLAISAVAN 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhc---ccCCCCC--cchhhHHHHHHHHHHH
Confidence 467899999999999999976553 2333 23333333333333222110 0011111 1122334556666667
Q ss_pred HHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 151 VFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.....+.+..+++.++...+.+.+..|+++.++++++++|+++..+++|.++++.|+++..
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 7777778889999999999999999999999999999999999999999999999998764
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.73 E-value=2.3e-07 Score=80.98 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHH
Q 025040 69 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 148 (259)
Q Consensus 69 ~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
.-+..+++..++|+.+.++.|...+ .+++|....++...++.+.+++++...+.. .... ..+...+..+.+.++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~---~~~~--~~~~~~~~~l~l~g~ 86 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRS---RSLP--PLSVSILSKIGLLGF 86 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHh---cccC--cchHHHHHHHHHHHH
Confidence 4567788889999999999998875 489999999999888777776665433211 0001 111223345555666
Q ss_pred HHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhh------cCCcccccchhhHHHHHHHHHHHHH
Q 025040 149 LAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLL------FDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~------~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
++...+...+..++++++..++++.++.|+++.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 87 ~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 87 LGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 665555567778999999999999999999999999999 6999999999999999999987553
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.63 E-value=7.7e-07 Score=73.71 Aligned_cols=187 Identities=15% Similarity=0.180 Sum_probs=129.5
Q ss_pred eecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhh----hhhheeecceeeeeccccc--------chHHHHHHH
Q 025040 9 SLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKM----AVVVVVIGVGVCTITDVKV--------NAKGFLCAC 75 (259)
Q Consensus 9 al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~----~~~l~~~Gv~l~~~~~~~~--------~~~G~~~~l 75 (259)
|++++.+|.+-=+ ....-+.+.++++++++|-.+..+++ ++++.++|+.+.+..|.+. ...|+...+
T Consensus 65 s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll 144 (269)
T PF06800_consen 65 SFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALL 144 (269)
T ss_pred HHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHH
Confidence 4444444433222 24667789999999999988877765 8888899999987655321 246999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025040 76 VAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNV 155 (259)
Q Consensus 76 ~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (259)
++.+.|..|.+..|. .+.++++...-++.-..+....+..+. .....+ ...+.-+..|+.=...|.
T Consensus 145 ~stigy~~Y~~~~~~----~~~~~~~~~lPqaiGm~i~a~i~~~~~----~~~~~~------k~~~~nil~G~~w~ignl 210 (269)
T PF06800_consen 145 ISTIGYWIYSVIPKA----FHVSGWSAFLPQAIGMLIGAFIFNLFS----KKPFFE------KKSWKNILTGLIWGIGNL 210 (269)
T ss_pred HHHHHHHHHHHHHHh----cCCChhHhHHHHHHHHHHHHHHHhhcc----cccccc------cchHHhhHHHHHHHHHHH
Confidence 999999999999865 367888887766433222222222111 111111 111344566666666777
Q ss_pred HHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCccccc----chhhHHHHHHHHHH
Q 025040 156 SQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFK----NISGMILAVVGMVI 209 (259)
Q Consensus 156 ~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~----~~~G~~lii~g~~~ 209 (259)
+++...++.+....=.++-+..+++.+.|.++++|+-+.. .++|.++++.|.++
T Consensus 211 ~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 211 FYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 7777888999999999999999999999999999998755 45688888877654
No 43
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.42 E-value=3.3e-08 Score=71.97 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=55.8
Q ss_pred eeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccc
Q 025040 4 AGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK 65 (259)
Q Consensus 4 ~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~ 65 (259)
.+.+.|+++.+ +....+.++.|+|+++++++++|||++++++.++.++++|++++..+|.+
T Consensus 50 ~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 50 LLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45677899999 58889999999999999999999999999999999999999999877764
No 44
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.40 E-value=7e-07 Score=76.00 Aligned_cols=199 Identities=11% Similarity=0.137 Sum_probs=113.1
Q ss_pred eeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc-cc---cch---------HH
Q 025040 4 AGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD-VK---VNA---------KG 70 (259)
Q Consensus 4 ~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~-~~---~~~---------~G 70 (259)
+++..|+.+.|.+..+=+.++.-++.++++..++|||++++.+.|..+++.|..++.... .+ .+. .+
T Consensus 65 ~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~ 144 (300)
T PF05653_consen 65 ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPG 144 (300)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcc
Confidence 456678999999999999999999999999999999999999999999999998865321 11 110 11
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHH---HHHHHH---HHHhhhhhccCcccccccCchhHHH
Q 025040 71 ---FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQ---AVSLLV---LGPFVDYYLNGKFITTYKMTSGAIL 141 (259)
Q Consensus 71 ---~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (259)
+...... ++..+.....+|..++ + +..+....+ ....+. ..........++. .-..+..|.
T Consensus 145 fl~y~~~~~~-~~~~L~~~~~~r~g~~-~-----i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~---~f~~~~~y~ 214 (300)
T PF05653_consen 145 FLVYFILVLV-LILILIFFIKPRYGRR-N-----ILVYISICSLIGSFTVLSAKAISILIKLTFSGDN---QFTYPLTYL 214 (300)
T ss_pred eehhHHHHHH-HHHHHHHhhcchhccc-c-----eEEEEEEeccccchhhhHHHHHHHHHHHHhcCch---hhhhhHHHH
Confidence 1111111 1111222122221111 1 122222212 111111 0111111111111 111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCceeeehhh-hhhhHHHHhhhhhhcCCc--ccc----cchhhHHHHHHHHHHHHH
Q 025040 142 FIFLSCALAVFCNVSQYLCIGRFSATSFQVLG-HMKTVCVLTLGWLLFDSA--LTF----KNISGMILAVVGMVIYSW 212 (259)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~-~~~pv~~~~~s~~~~~e~--~s~----~~~~G~~lii~g~~~~~~ 212 (259)
+++....+....-.....++++.++.....+. ..-...+++-|.++|+|- ++. ....|..+++.|+.+-+.
T Consensus 215 l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~ 292 (300)
T PF05653_consen 215 LLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS 292 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence 44444444555555566688888887766555 445567788888899984 555 445677888888888643
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.35 E-value=8.6e-06 Score=67.39 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=108.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHH
Q 025040 67 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLS 146 (259)
Q Consensus 67 ~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (259)
+..|+++++.+.+.|+....+.|-+. +.++.++..+...++...++....+..... ...+..-++..+..+...
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~---~~~~~~~~p~~~~~~~l~ 78 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWR---ELKQLLKQPKTLLMLALT 78 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHhCcHHHHHHHHH
Confidence 34699999999999999999988654 578999999999888887776655543211 111122234445555556
Q ss_pred HHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 147 CALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
+..-........|+..+-....+|.-.+++|.+.+++|.++++|+++..|++..++..+|+..-.+.
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 6555555555557888889999999999999999999999999999999999999999999876544
No 46
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.35 E-value=6.7e-06 Score=61.04 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHH
Q 025040 69 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 148 (259)
Q Consensus 69 ~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
.|+++++.+.++.+...++.|+-.++.+. .+.... ....+.. . .++. ..+..++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~--~~~~~~-----~~~~~~~--~--------------~~p~---~~i~lgl 55 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL--LSHAWD-----FIAALLA--F--------------GLAL---RAVLLGL 55 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC--ccchhH-----HHHHHHH--H--------------hccH---HHHHHHH
Confidence 47889999999999999999876654322 111100 0000000 0 0110 1122233
Q ss_pred HHHH-HHHHHHHHhcccCceeeehhhhhhhHHHHhhhhh--hcCCcccccchhhHHHHHHHHHHHHH
Q 025040 149 LAVF-CNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWL--LFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 149 ~~~~-~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~--~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
..++ ..+.+..++++.+...+.....+.++...+.++. +|||++|..+++|.+++++|+++.+.
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3333 3334556789999998888888888778777875 89999999999999999999999754
No 47
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.34 E-value=1.2e-05 Score=70.12 Aligned_cols=138 Identities=13% Similarity=0.021 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHH
Q 025040 67 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIG-SFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFL 145 (259)
Q Consensus 67 ~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (259)
++.-..+++.--.+...+++..|...++ .+ |+.+..++...+.+.+.+.... . .. ..+........+..++.
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~-~-~~---~~~~~~~~~~~~~~llp 119 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWAT-G-FR---KIPRIKSLKLFLKNFLP 119 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHh-C-CC---CCCCCCCHHHHHHHHHH
Confidence 4444455555555556777788887774 56 9999999987776654433221 1 00 00011101123445666
Q ss_pred HHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 146 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.++++.......+..+++.++..++++..++|+++.++++++++|+++..+++|.++++.|+.+..
T Consensus 120 ~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 120 QGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 666666655556678899999999999999999999999999999999999999999999998754
No 48
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.32 E-value=5.8e-06 Score=68.93 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 025040 82 SLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCI 161 (259)
Q Consensus 82 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (259)
+...+..|...++ ..++.....+....+.+.+.+..... ..........+..++.....+.+.+..+
T Consensus 2 g~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~a~ 68 (260)
T TIGR00950 2 GTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR------------PPLKRLLRLLLLGALQIGVFYVLYFVAV 68 (260)
T ss_pred cchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc------------cCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555654443 57888888888766665554432111 0111122344444555556667777899
Q ss_pred cccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 162 GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 162 ~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
++.++...+++..+.|+++.+++.++++|+++..+++|+++.++|+.+..
T Consensus 69 ~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 69 KRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 99999999999999999999999999999999999999999999988864
No 49
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.30 E-value=1.8e-05 Score=67.71 Aligned_cols=126 Identities=8% Similarity=0.056 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHH
Q 025040 77 AVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVS 156 (259)
Q Consensus 77 a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (259)
--++...++++.|...++. ..|..+..++...+.+.+.+.... .. ......+...+..++..|++.......
T Consensus 10 w~~~~~~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 10 WYFLNVYFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWSS--GL-----PKRLKISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHHh--CC-----CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556677777642 567777777765554443332110 00 011122333445566666666666667
Q ss_pred HHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHH
Q 025040 157 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIY 210 (259)
Q Consensus 157 ~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~ 210 (259)
.+..++++++...+++..+.|+++.++++++++|+++..+++|.++.++|+.+.
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 778899999999999999999999999999999999999999999999998764
No 50
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.30 E-value=1.7e-05 Score=67.70 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHH
Q 025040 69 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 148 (259)
Q Consensus 69 ~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
.++++.++++++|+...+..|...+ +.+|.....+....+.+.+++.. .. . ... ..... .++..++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~---~~--~--~~~--~~~~~---~~~~~~l 69 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTV---GF--P--RLR--QFPKR---YLLAGGL 69 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHc---cc--c--ccc--cccHH---HHHHHhH
Confidence 4677889999999999999987655 58999999888766665554331 10 0 110 11111 2222333
Q ss_pred HHHHHHHHHHHHh----cccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 149 LAVFCNVSQYLCI----GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 149 ~~~~~~~~~~~~l----~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.......+.+... +..++..++++.++.|+++.++++++++|+++..+++|+++.++|+++..
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 2223333333333 45677788899999999999999999999999999999999999998764
No 51
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.25 E-value=2.2e-05 Score=67.05 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHH
Q 025040 71 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 150 (259)
Q Consensus 71 ~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
.++.++++++|+...+..|...+ +.+|....++....+.+.+++. ... ....+ . .....+...
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~---~~~-------~~~~~--~---~~~~~g~~~ 68 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFF---VAR-------PKVPL--N---LLLGYGLTI 68 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHH---hcC-------CCCch--H---HHHHHHHHH
Confidence 35688899999999999987665 5899999999976655443322 110 00111 1 122223322
Q ss_pred HH-HHHHHHHHhcc-cCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 151 VF-CNVSQYLCIGR-FSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 151 ~~-~~~~~~~~l~~-~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.. .....+...++ .++...+++..+.|+++.++++++++|+++..+++|.++.++|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 22 22233445565 577788889999999999999999999999999999999999987764
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.22 E-value=3.8e-05 Score=65.38 Aligned_cols=129 Identities=14% Similarity=0.025 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHH
Q 025040 71 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 150 (259)
Q Consensus 71 ~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
+...++-.+.|+...+..|.... +.+|.....+....+.+.+++....... .. .+...+......|...
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~-----~~----~~~~~~~~~~~~g~~~ 78 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGH-----PL----PTLRQWLNAALIGLLL 78 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCC-----CC----CcHHHHHHHHHHHHHH
Confidence 34567788899999999987555 6899999999988777666554322110 10 0111222333344333
Q ss_pred -HHHHHHHHHHh-cccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 151 -VFCNVSQYLCI-GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 151 -~~~~~~~~~~l-~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.......+... ++.++..++++.++.|+++.+++++ ++|+++..+++|.++.++|+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 23344445556 8888888999999999999999986 799999999999999999988764
No 53
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.12 E-value=4.7e-07 Score=66.50 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=53.4
Q ss_pred eeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceee
Q 025040 3 IAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 59 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~ 59 (259)
..+.+.++++.+++..+.+.++.|+++.+++++++||+++++++.++++++.|++++
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 68 YLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999998765
No 54
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.01 E-value=1.9e-05 Score=57.33 Aligned_cols=70 Identities=16% Similarity=0.395 Sum_probs=56.9
Q ss_pred HHHHHHHH-HHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 144 FLSCALAV-FCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
+..+..+. ..+...++..++.++ .++.+..+.|+++.++++++++|+++..+++|.+++++|+.+..+.+
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 33344333 445556667888885 77799999999999999999999999999999999999999987653
No 55
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.98 E-value=4.9e-05 Score=64.66 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHH
Q 025040 70 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 149 (259)
Q Consensus 70 G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (259)
|++++++++++|+...+..|+.. +.++.+... ...+.+.+......... .. ......+...+++|..
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~----~~----~~~~~~~~~g~l~G~~ 68 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVL----PE----FWALSIFLVGLLSGAF 68 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhC----Cc----ccccHHHHHHHHHHHH
Confidence 67899999999999999998754 455555542 22333333322222210 01 1123444455666666
Q ss_pred HHHHHHHHHHHhcccCceeeehhhh-hhhHHHHhhhhhhcCCcccccc----hhhHHHHHHHHHHHHH
Q 025040 150 AVFCNVSQYLCIGRFSATSFQVLGH-MKTVCVLTLGWLLFDSALTFKN----ISGMILAVVGMVIYSW 212 (259)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~si~~~-~~pv~~~~~s~~~~~e~~s~~~----~~G~~lii~g~~~~~~ 212 (259)
=...|++.+.++++.+....-.+.+ +.+++..+++.++|+|+.+..+ ++|.++++.|+.+...
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~ 136 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSR 136 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEe
Confidence 5556788888999999888877777 8888999999999999999999 9999999999888643
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.96 E-value=8.5e-05 Score=63.59 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhcCCC--HHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 025040 81 TSLQQITIGSLQKKYSIG--SFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQY 158 (259)
Q Consensus 81 ~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (259)
+..+.++++++.++.... +..+.+.+.....+.......... ...... ..+.-....+++........+
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK----FPKSRK-----IPLKKYAILSFLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----ccCCCc-----ChHHHHHHHHHHHHHHHHHHH
Confidence 334667788888655555 666766665444433333222111 001111 111233444556666666777
Q ss_pred HHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhH
Q 025040 159 LCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 159 ~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
.++++++..+..+.-..+|+.+.++++++++++.+..++.+.+++.+|+.+....+..
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 8899999999999999999999999999999999999999999999999998876543
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.95 E-value=1.5e-06 Score=62.84 Aligned_cols=58 Identities=14% Similarity=-0.023 Sum_probs=52.9
Q ss_pred eeeeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeee
Q 025040 3 IAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 60 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~ 60 (259)
..+...+++.+|++.+..+-++.++++.+++++++|||+++++++|+.+.++|++++.
T Consensus 51 ~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 51 MVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3455678899999999999999999999999999999999999999999999998764
No 58
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=0.0004 Score=58.40 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHH
Q 025040 68 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 147 (259)
Q Consensus 68 ~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (259)
..+....++.++.|+......+....+ ..++..........+... ..+...... . .. .......+...+..+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~ 77 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALL---LLPLLLLEP-R-GL--RPALRPWLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHH---HHHHHHhhc-c-cc--cccccchHHHHHHHH
Confidence 457778888889999988888876553 244455444443333322 111111100 0 00 011111233555555
Q ss_pred HHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhh-hhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 148 ALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGW-LLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~-~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
+.........+..++++++...+.+....|+++.++++ ++++|+++..++.|.++.+.|+.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~ 145 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG 145 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC
Confidence 55556666677789999999999999999999999997 77799999999999999999999876543
No 59
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.89 E-value=4.4e-05 Score=55.23 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 157 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 157 ~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
...++++.+...+...-.+.++.+.+.|+++|||+++..+++|.++++.|+++..
T Consensus 54 ~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 54 WLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456888888888888889999999999999999999999999999999998753
No 60
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.83 E-value=0.00055 Score=51.51 Aligned_cols=131 Identities=19% Similarity=0.259 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHH
Q 025040 71 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 150 (259)
Q Consensus 71 ~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
.++++++.++-+++.....++.++.+ +|+.........+.+.+.....+.+.. ......+.+| .....|+++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p~------w~~lGG~lG 74 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVPW------WAYLGGLLG 74 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCCh------HHhccHHHH
Confidence 46778888888898888888877543 588888888888887777766655432 1111111122 444588888
Q ss_pred HHHHHHHHHHhcccCceeeehhhhh-hhHHHHhhhhh-hcC---CcccccchhhHHHHHHHHHH
Q 025040 151 VFCNVSQYLCIGRFSATSFQVLGHM-KTVCVLTLGWL-LFD---SALTFKNISGMILAVVGMVI 209 (259)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~si~~~~-~pv~~~~~s~~-~~~---e~~s~~~~~G~~lii~g~~~ 209 (259)
.....+.....+++++......... +-+.+.+++.+ +|+ ++++..+++|.+++++|+.+
T Consensus 75 ~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 75 VFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8877777788899999888777655 45566777776 343 46999999999999999863
No 61
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.69 E-value=0.00045 Score=59.58 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 141 LFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
+-.++.+++=...|+....+.++++.+...++.....+++.++|++++++++++.|++|+++++.|+.+....+
T Consensus 80 w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 80 WKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 34444567777789989999999999999999999999999999999999999999999999999998876554
No 62
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.51 E-value=0.0037 Score=54.11 Aligned_cols=205 Identities=10% Similarity=0.044 Sum_probs=118.7
Q ss_pred eeeeecccchhHHHHH-hhhhHHHHHHHHHHHhcccc---C----hhhhhhhhheeecceeeee----ccc--------c
Q 025040 6 MNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHY---S----KEVKMAVVVVVIGVGVCTI----TDV--------K 65 (259)
Q Consensus 6 ~n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~---~----~~~~~~~~l~~~Gv~l~~~----~~~--------~ 65 (259)
+..+++++.++...-+ ..++-+...++..++++|=. + ..-.+++++.++|+++.+. .|. +
T Consensus 90 ~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~ 169 (345)
T PRK13499 90 YGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEE 169 (345)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 3446777777765443 45777888888888887533 2 3356788888899999776 332 1
Q ss_pred c-chHHHHHHHHHHHHHHHHHH-------HHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhh--ccCcc---ccc
Q 025040 66 V-NAKGFLCACVAVLSTSLQQI-------TIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYY--LNGKF---ITT 132 (259)
Q Consensus 66 ~-~~~G~~~~l~a~l~~a~~~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~ 132 (259)
. .-.|++.++++.+.+++|+. ..+... +.+.++.....-+.....+..+.....+... ..++. ..+
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~ 248 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-ALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKAD 248 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchh
Confidence 2 24799999999999999994 332211 1345554443333221111111111111010 01111 111
Q ss_pred ccCc----hhHHHHHHHHHHHHHHHHHHHHHHhcccCceeeeh---hh-hhhhHHHHhhhhhhcCCccc------ccchh
Q 025040 133 YKMT----SGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQV---LG-HMKTVCVLTLGWLLFDSALT------FKNIS 198 (259)
Q Consensus 133 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si---~~-~~~pv~~~~~s~~~~~e~~s------~~~~~ 198 (259)
...+ ..-.....+.|+.=+..++.+...-.+.+.....+ ++ .+.-+++.+.|+ +++|.-+ ...++
T Consensus 249 ~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~ 327 (345)
T PRK13499 249 FSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSL 327 (345)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHH
Confidence 1111 22333445556555556666655556665443333 33 566688999999 5999877 66789
Q ss_pred hHHHHHHHHHHHHH
Q 025040 199 GMILAVVGMVIYSW 212 (259)
Q Consensus 199 G~~lii~g~~~~~~ 212 (259)
|.+++++|..+...
T Consensus 328 G~vliI~g~~lig~ 341 (345)
T PRK13499 328 GCVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 63
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.46 E-value=0.0014 Score=56.68 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhh-hhccCcccccc-cCchhHHHHHHH
Q 025040 68 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVD-YYLNGKFITTY-KMTSGAILFIFL 145 (259)
Q Consensus 68 ~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 145 (259)
..|+++++++++|++.+.+-.|+ .|+ -+++.. |- ..+. ...++.|+.. .....+..+.. +.+...+...++
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~---w~wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK---WSWETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC---CchhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 46999999999999999999976 232 334443 44 2233 3333333221 11112222222 255666667777
Q ss_pred HHHHHHHHHHHHHHHhcccCceee-ehhhhhhhHHHHhhhhhhcCCcc---c----ccchhhHHHHHHHHHHHHHHhhH
Q 025040 146 SCALAVFCNVSQYLCIGRFSATSF-QVLGHMKTVCVLTLGWLLFDSAL---T----FKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~-si~~~~~pv~~~~~s~~~~~e~~---s----~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
+|++=...+...+..+++.+.... .+..-++-+.+++++.+++||-- + ..-++|.+++++|+++..+...+
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777777777777888888776544 44556788889999999999632 2 34678999999999998875433
No 64
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.42 E-value=1.7e-05 Score=57.48 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=49.2
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeee
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 61 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~ 61 (259)
+.+.+++.-.+|...=+..++|+++++++++++|||++..+|+|+++.++|+++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 445566666777777778899999999999999999999999999999999998753
No 65
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.41 E-value=0.00022 Score=59.00 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 141 LFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
+.....+++-.+.|...|..+++++|.+..+....+.+++.++++++++.+++..||++..+...|+.+......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 455566777777888888999999999999999999999999999999999999999999999999999765443
No 66
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.41 E-value=0.0034 Score=53.47 Aligned_cols=105 Identities=13% Similarity=0.017 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHH
Q 025040 68 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 147 (259)
Q Consensus 68 ~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (259)
..|..+.++++++|+......|...+ +.+|..+..+....+.+.+++...... . ..+...+...+..+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~------~----~~~~~~~~~~~~~g 78 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWR------L----RFAKEQRLPLLFYG 78 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHh------c----cCCHHHHHHHHHHH
Confidence 46899999999999999999987766 479999999998887766654321110 0 11111222233334
Q ss_pred HHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhh
Q 025040 148 ALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLG 184 (259)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s 184 (259)
......+...++.++++++...+++.+..|+++.+++
T Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4445556667778999999999999999999998877
No 67
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.31 E-value=4.9e-05 Score=56.43 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=54.1
Q ss_pred ceeeeeeeecccchhHHHHHhhhhHHHHHHHHHH--HhccccChhhhhhhhheeecceeeeec
Q 025040 2 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWI--LHNKHYSKEVKMAVVVVVIGVGVCTIT 62 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l--~~~~~~~~~~~~~~~l~~~Gv~l~~~~ 62 (259)
++.+++.+++..+++.+.-+.+..+.++.+.++. ++||+++..+++|+++.++|+.++..+
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 4567889999999999999999998888888885 899999999999999999999987643
No 68
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00067 Score=57.09 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=52.8
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeee
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 61 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~ 61 (259)
.++.|+.+.|.+..+-+.++..+..++++..++|||++....+|..++++|-.+++.
T Consensus 80 ~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 80 ANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred hhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 456688999999999999999999999999999999999999999999999888764
No 69
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.25 E-value=7.3e-05 Score=61.17 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHH
Q 025040 69 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 148 (259)
Q Consensus 69 ~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
.|..+..++ ..+....+..++.. ..+|.+...... ...+++..|..-...+. .+.+..- . ..+++=|+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~---e~~p~e~a~~r~---l~~mlit~pcliy~~~~-v~gp~g~--R--~~LiLRg~ 105 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVL---ENDPMELASFRL---LVRMLITYPCLIYYMQP-VIGPEGK--R--KWLILRGF 105 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhh---ccChhHhhhhhh---hhehhhhheEEEEEeee-eecCCCc--E--EEEEeehh
Confidence 466666666 55666666666554 345555544442 22223222221110000 0001100 0 02344556
Q ss_pred HHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 149 LAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
.++..-+..|+++.+.+-..+.++....|+++++++|.+++|+.|....+|..+.+.|+++..+
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 6666667788899999999999999999999999999999999999999999999999998653
No 70
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.25 E-value=0.00081 Score=49.12 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=42.6
Q ss_pred HHhcccCcee-eehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 159 LCIGRFSATS-FQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 159 ~~l~~~~~~~-~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
.++++++... .++...+.-+.+.+.|+++|+|++|..+++|+.++++|+...+.
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3456654432 34445677888899999999999999999999999999988643
No 71
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.23 E-value=0.00027 Score=58.41 Aligned_cols=132 Identities=18% Similarity=0.217 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHH
Q 025040 70 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 149 (259)
Q Consensus 70 G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (259)
|++.+++|+++++...+=.|+.- .-|+.-...+++....+...+.....+. ..+.+ +..++|..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~---~gDg~~fQw~~~~~i~~~g~~v~~~~~~---------p~f~p----~amlgG~l 64 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD---TGDGFFFQWVMCSGIFLVGLVVNLILGF---------PPFYP----WAMLGGAL 64 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc---CCCcHHHHHHHHHHHHHHHHHHHHhcCC---------Cccee----HHHhhhhh
Confidence 67888999999998888887543 2355555544432222222222111110 01111 22233322
Q ss_pred HHHHHHHHHHHhcccCc-eeeehhhhhhhHHHHhhhhh-hcCCc-----ccccchhhHHHHHHHHHHHHHHhhHH
Q 025040 150 AVFCNVSQYLCIGRFSA-TSFQVLGHMKTVCVLTLGWL-LFDSA-----LTFKNISGMILAVVGMVIYSWAVEAE 217 (259)
Q Consensus 150 ~~~~~~~~~~~l~~~~~-~~~si~~~~~pv~~~~~s~~-~~~e~-----~s~~~~~G~~lii~g~~~~~~~~~~~ 217 (259)
=...|.+..-+++.++- .-..+.+..+-+++...|-+ +||++ -.+..++|++++++|..++...|...
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 22233333333444331 22235556666667766654 67654 46889999999999999998765443
No 72
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.022 Score=43.04 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHH
Q 025040 68 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 147 (259)
Q Consensus 68 ~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (259)
+...++.+.+.++-..+.-...++.+..+ +|.--.......|.+.+.....+.+.........+.+ ++..+.|
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p------wW~~~GG 76 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP------WWAWIGG 76 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc------hHHHHcc
Confidence 45667888888888888888887776544 5766666676667777766665543221111111112 2455566
Q ss_pred HHHHHHHHHHHHHhcccCceeeehhh-hhhhHHHHhhhhhhc-C---CcccccchhhHHHHHHHHHHH
Q 025040 148 ALAVFCNVSQYLCIGRFSATSFQVLG-HMKTVCVLTLGWLLF-D---SALTFKNISGMILAVVGMVIY 210 (259)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~si~~-~~~pv~~~~~s~~~~-~---e~~s~~~~~G~~lii~g~~~~ 210 (259)
+++.++-........+++++.+..+. .-+-+.+.+++.+=+ | .+++...++|++++++|+.+.
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 77777666666677888777654443 335555566665533 3 359999999999999996554
No 73
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.89 E-value=0.0026 Score=45.79 Aligned_cols=53 Identities=19% Similarity=0.425 Sum_probs=42.2
Q ss_pred HhcccCcee-eehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 160 CIGRFSATS-FQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 160 ~l~~~~~~~-~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
++++.+... .++..-+..+.+.+.|+++|+|++++.+++|+.++++|++..+.
T Consensus 50 al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 50 TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455554332 34455667788899999999999999999999999999999754
No 74
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0039 Score=44.16 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=45.3
Q ss_pred HhcccCc-eeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 160 CIGRFSA-TSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 160 ~l~~~~~-~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
++|+++- +..++..-...+.+.+.|+++|+|+++..+++|+.++++|+..-+.
T Consensus 50 alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 50 ALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 5677553 3457788888999999999999999999999999999999988654
No 75
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.86 E-value=0.0047 Score=44.03 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=44.8
Q ss_pred HHhcccCc-eeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 159 LCIGRFSA-TSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 159 ~~l~~~~~-~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
.++++++. +..++..-+..+.+.+.|+++|+|++++.+++|+.+++.|++.-+
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 35666654 345677788899999999999999999999999999999998864
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.76 E-value=0.00032 Score=51.22 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=52.0
Q ss_pred ceeeeeeeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeee
Q 025040 2 SIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 61 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~ 61 (259)
|+.+...+++++|++.+..+ .....+.+.+++.+++||+++..+++++.+.++|++.+..
T Consensus 43 sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 43 SYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 34455668899999988877 4689999999999999999999999999999999988754
No 77
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.075 Score=45.66 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 142 FIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
-....++.-.+.|...|..+.+.+|.+..+...++...+.+++.++++++++..||...++...|+.+..
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3444455556667777888999999999999999999999999999999999999999999999999866
No 78
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.59 E-value=0.0083 Score=43.04 Aligned_cols=52 Identities=25% Similarity=0.558 Sum_probs=42.5
Q ss_pred HhcccCc-eeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 160 CIGRFSA-TSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 160 ~l~~~~~-~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
++++++. +..++..-+..+.+.+.++++|+|++++.+++|+.+++.|+...+
T Consensus 55 al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 55 AVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4566543 334666777888889999999999999999999999999998753
No 79
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.55 E-value=0.028 Score=46.89 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCceeeehhh-hhhhHHHHhhhhhhcCCcccccchh----hHHHHHHHHHHHH
Q 025040 137 SGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLG-HMKTVCVLTLGWLLFDSALTFKNIS----GMILAVVGMVIYS 211 (259)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~-~~~pv~~~~~s~~~~~e~~s~~~~~----G~~lii~g~~~~~ 211 (259)
...++..+++|++=.+.+...+...++.+...+-.++ -++-+.+.++++++|||.-+..+++ +.+++++|+++.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4666677788887777888888888998888777666 5667778999999999987766654 7888899998877
Q ss_pred HHhhH
Q 025040 212 WAVEA 216 (259)
Q Consensus 212 ~~~~~ 216 (259)
+.+++
T Consensus 122 ~~~~~ 126 (269)
T PF06800_consen 122 YQDKK 126 (269)
T ss_pred ccccc
Confidence 65543
No 80
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.37 E-value=0.00074 Score=48.61 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=50.0
Q ss_pred eeeeeeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeee
Q 025040 4 AGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 61 (259)
Q Consensus 4 ~~~n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~ 61 (259)
.+-..+++++|++.+..+ .....+.+.+.+++++||++++.+++++.+.++|++.+..
T Consensus 45 ~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344567889999988877 4588999999999999999999999999999999988743
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.34 E-value=0.012 Score=50.28 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHH
Q 025040 67 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLS 146 (259)
Q Consensus 67 ~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (259)
...|+.+++.++++.+...+++|+-.++.+....+-- . .. . . .+....|+..+..
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~---~~-----~-~--------------~l~~~~W~~G~~~ 59 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S---GG-----R-S--------------YLRRPLWWIGLLL 59 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c---hh-----h-H--------------HHhhHHHHHHHHH
Confidence 3579999999999999999999986543221111000 0 00 0 0 0001111222222
Q ss_pred HHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 147 CALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
...+-.. .+.++...++...+.++.+.-++..+++.++++|+++..++.|.++++.|..+..
T Consensus 60 ~~~g~~~---~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 60 MVLGEIL---NFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HhcchHH---HHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 2222233 2335666777778888888899999999999999999999999999999987754
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.20 E-value=0.00035 Score=56.57 Aligned_cols=191 Identities=14% Similarity=0.154 Sum_probs=126.8
Q ss_pred eeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhh----hhhhheeecceeeeecccc--------cchHHHHHH
Q 025040 8 FSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVK----MAVVVVVIGVGVCTITDVK--------VNAKGFLCA 74 (259)
Q Consensus 8 ~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~----~~~~l~~~Gv~l~~~~~~~--------~~~~G~~~~ 74 (259)
-|+++++++.+.=+ ..+.-+-+.+++++.+||=.+..+. +++++.+.|+++-+..|.+ ..-.|+...
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L 157 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVIL 157 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeee
Confidence 35666666554332 3455667788899999998877664 5778888999998877631 123688888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHH
Q 025040 75 CVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCN 154 (259)
Q Consensus 75 l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (259)
+.+.+.|-.|.+..+. .++|-++...-++. .+...+..+...-.. .......+.-...|+.=...|
T Consensus 158 ~iSt~GYv~yvvl~~~----f~v~g~saiLPqAi----GMv~~ali~~~~~~~------~~~~K~t~~nii~G~~Wa~GN 223 (288)
T COG4975 158 LISTLGYVGYVVLFQL----FDVDGLSAILPQAI----GMVIGALILGFFKME------KRFNKYTWLNIIPGLIWAIGN 223 (288)
T ss_pred eeeccceeeeEeeecc----ccccchhhhhHHHH----HHHHHHHHHhhcccc------cchHHHHHHHHhhHHHHHhhH
Confidence 8899999999888853 34566666555532 222222222111000 111122234555666666677
Q ss_pred HHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccc----hhhHHHHHHHHHHHHH
Q 025040 155 VSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKN----ISGMILAVVGMVIYSW 212 (259)
Q Consensus 155 ~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~----~~G~~lii~g~~~~~~ 212 (259)
..++.+-++.+..+.=.++-+.-+++++=++++++|+-|..+ ++|.++++.|..+...
T Consensus 224 l~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 224 LFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 878888888888888788888899999999999999988665 4677788877766543
No 83
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.12 E-value=0.0014 Score=46.69 Aligned_cols=56 Identities=11% Similarity=-0.005 Sum_probs=47.4
Q ss_pred eeeeeecccchhHHHHHh-hhhHHHHHHHHHHHhccccChhhhhhhhheeecceeee
Q 025040 5 GMNFSLMLNSVGFYQISK-LSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 60 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~-~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~ 60 (259)
+-..+++.+|++++..+- ....+.+.+.+++++||++++.+++++.+.++|++.+-
T Consensus 45 ~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 45 LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 334577888888766554 48899999999999999999999999999999998763
No 84
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.03 E-value=0.0037 Score=47.53 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=50.7
Q ss_pred eeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeee
Q 025040 6 MNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 60 (259)
Q Consensus 6 ~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~ 60 (259)
++..++++|+-+++++.....+.+.+++.++++|+++..++.|++++++|+++..
T Consensus 98 ~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 98 SFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 4557789999999999999999999999999999999999999999999998754
No 85
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.01 E-value=0.0017 Score=46.63 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=46.0
Q ss_pred eeeeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhheeecceee
Q 025040 6 MNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 59 (259)
Q Consensus 6 ~n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~ 59 (259)
-..+++++|++++..+ .....+.+.+.+++++||++++.+++++.+.+.|++.+
T Consensus 52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3457788898876655 45888999999999999999999999999999998764
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.89 E-value=0.016 Score=40.37 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHhcccCceee-ehhhhhhhHHHHhhhhhhcCCcccccchhhHHHH
Q 025040 159 LCIGRFSATSF-QVLGHMKTVCVLTLGWLLFDSALTFKNISGMILA 203 (259)
Q Consensus 159 ~~l~~~~~~~~-si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~li 203 (259)
.++++.+...+ .+...+..+.+.+.|+++|||++|..+++|+.++
T Consensus 48 ~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 48 LALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 46777665554 5566788889999999999999999999999875
No 87
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.004 Score=44.10 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=46.8
Q ss_pred eeeeecccchhHHHH-HhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeee
Q 025040 6 MNFSLMLNSVGFYQI-SKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 60 (259)
Q Consensus 6 ~n~al~~~~~~~~~~-l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~ 60 (259)
--.+++++|++++.. -.....+.+++.+++++||+.+..+++++.+.++|++.+-
T Consensus 47 Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 47 LSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 345778899887554 4678899999999999999999999999999999988653
No 88
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.36 E-value=0.011 Score=48.32 Aligned_cols=53 Identities=8% Similarity=-0.052 Sum_probs=47.8
Q ss_pred eeeeeecccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecce
Q 025040 5 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVG 57 (259)
Q Consensus 5 ~~n~al~~~~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~ 57 (259)
+..+++..++...+.++.++.|.+.++.++++++|+++..||.++...+++..
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999999988877654
No 89
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.23 E-value=0.0072 Score=42.17 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=27.2
Q ss_pred eeeeeeeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhh
Q 025040 3 IAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVV 51 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l 51 (259)
+.+...+++++|.+.+.-+ .....+.+.+.+.+++||+++..|+.++.+
T Consensus 43 ~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 43 FYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 3455668899999988665 569999999999999999999999999875
No 90
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.025 Score=46.16 Aligned_cols=131 Identities=17% Similarity=0.198 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHH
Q 025040 70 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 149 (259)
Q Consensus 70 G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (259)
+++.+++-++.|+.......+ .+-+|.+...- +.++++...+...++ .+...+...+..-+.+|+.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k----~GG~p~qQ~lG-tT~GALifaiiv~~~---------~~p~~T~~~~iv~~isG~~ 68 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANK----FGGKPYQQTLG-TTLGALIFAIIVFLF---------VSPELTLTIFIVGFISGAF 68 (288)
T ss_pred hHHHHHHHHHHhcccceeeee----cCCChhHhhhh-ccHHHHHHHHHHhee---------ecCccchhhHHHHHHhhhH
Confidence 567888889999877666643 23345544432 233444333332221 1112344455566666666
Q ss_pred HHHHHHHHHHHhcccCceeeehhh-hhhhHHHHhhhhhhcCCcccccch----hhHHHHHHHHHHHHHHh
Q 025040 150 AVFCNVSQYLCIGRFSATSFQVLG-HMKTVCVLTLGWLLFDSALTFKNI----SGMILAVVGMVIYSWAV 214 (259)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~si~~-~~~pv~~~~~s~~~~~e~~s~~~~----~G~~lii~g~~~~~~~~ 214 (259)
=.+.+...+...+..+...+..++ -.+-+-+.+++++.|||--+..++ +.+++++.|+++.++.+
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec
Confidence 556677777888887777766555 467788899999999997776654 45677888887765543
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.57 E-value=0.022 Score=49.22 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 141 LFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
...+..+..=+..|+....++++++....++++.....++..+|.++-+|++|..++++..+.+.|+++.+..+.
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 344555555666788888899999999999999999999999999999999999999999999999999876543
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.073 Score=43.21 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=50.7
Q ss_pred HHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 156 SQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 156 ~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
+...++++++=.+.-+--..+|+-..++|+++.+.+.++....-..+|++|+.++.+..+
T Consensus 101 ssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 101 SSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred hccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 345567777766666677889999999999999999999999999999999999887543
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.86 E-value=0.16 Score=36.55 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=43.1
Q ss_pred HHHHhcccCceeeehh-hhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHH
Q 025040 157 QYLCIGRFSATSFQVL-GHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVI 209 (259)
Q Consensus 157 ~~~~l~~~~~~~~si~-~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~ 209 (259)
+++.+++.+-+.+..+ +.+.=+++.+.++++.+|..+...++|+++++.|+.+
T Consensus 58 f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 58 FFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4456777776666555 5888889999998888888899999999999999764
No 94
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=92.75 E-value=0.39 Score=40.54 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhh-hhhcc----C-cccccc-cCchhHHHHHHHHH
Q 025040 75 CVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFV-DYYLN----G-KFITTY-KMTSGAILFIFLSC 147 (259)
Q Consensus 75 l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~-~~~~~~~~~~~~~~ 147 (259)
+++.+||+.+...+|-.-|+.+.+ +..+|=..++.+.......+. +..-. + .+..+. +.+...+...+..|
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 467889988888777665543332 223333333444333332222 21110 1 111121 23345556667777
Q ss_pred HHHHHHHHHHHHHhcccCceeeehhh-hhhhHHHHhhhhhhcCCccc--ccchhhHHHHHHHHHHHHHHh
Q 025040 148 ALAVFCNVSQYLCIGRFSATSFQVLG-HMKTVCVLTLGWLLFDSALT--FKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~si~~-~~~pv~~~~~s~~~~~e~~s--~~~~~G~~lii~g~~~~~~~~ 214 (259)
++--+.|+..-+.+...+-..+-.++ .+.-++++++-|++ +.+.+ ..-+-|.+++++++++-....
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ah 148 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAAAH 148 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHHHH
Confidence 77777777766555554433222222 23333445555544 44444 355668888887777654433
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.72 E-value=0.031 Score=40.26 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=44.0
Q ss_pred eeeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhheeecceee
Q 025040 7 NFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 59 (259)
Q Consensus 7 n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~ 59 (259)
++.+...+.|.+.-+ +++.=+||++.++++.+|..+++.++|+.+.+.|+.+.
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 345566677766666 58888999999999988888999999999999999875
No 96
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=88.92 E-value=0.11 Score=41.10 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=54.4
Q ss_pred HHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHh
Q 025040 153 CNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 153 ~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
.|+.+..++++++|+.++.+..-+..+..+++++.+++++....++..++.+.|+++..+..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 35555667999999999999999999999999999999999999999999999988866544
No 97
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=88.54 E-value=0.27 Score=42.22 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHH
Q 025040 141 LFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVV 205 (259)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~ 205 (259)
.-++-.+++..+........+++.+...+-++-.++|+++.++++++.+|+.+...+..++.++.
T Consensus 84 ~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~ 148 (316)
T KOG1441|consen 84 RTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVF 148 (316)
T ss_pred HHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeee
Confidence 34455555555555556667899999999999999999999999999999977644443333333
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=88.31 E-value=7.1 Score=33.82 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhc-cCccccc-ccCchhHHHHHHH
Q 025040 68 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYL-NGKFITT-YKMTSGAILFIFL 145 (259)
Q Consensus 68 ~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 145 (259)
..|+++..++++|.+.+.+-.||.. +.+ ++..-.. +.+...+..|...... ..+..+. ...+...+....+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk---~Ws-WEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l 78 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVK---GWS-WESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFL 78 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcC---Ccc-HHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHH
Confidence 4799999999999999999888653 222 2222111 2223333333321111 1111111 1122222222222
Q ss_pred HHHHHHHHHHHHHHHhcccCce-eeehhhhhhhHHHHhhhhhh-------cCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 146 SCALAVFCNVSQYLCIGRFSAT-SFQVLGHMKTVCVLTLGWLL-------FDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~-~~si~~~~~pv~~~~~s~~~-------~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
.|+.=-+.....-..+++++-. ..++..-+..++++++--++ ++++-....++|.+++++|+.+..+.-.
T Consensus 79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 2222111122122245555432 23333334444444443333 3334456789999999999999876643
No 99
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.58 E-value=3.1 Score=35.33 Aligned_cols=137 Identities=11% Similarity=0.074 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcC------CCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHH
Q 025040 70 GFLCACVAVLSTSLQQITIGSLQK-KYS------IGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILF 142 (259)
Q Consensus 70 G~~~~l~a~l~~a~~~v~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (259)
..++...-...+-.+.++++++.. +++ -++.-+.+.+...+.+....+ .... .. . ......|+-
T Consensus 15 L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~---l~~~-k~-~----~~~~apl~~ 85 (327)
T KOG1581|consen 15 LVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAM---LKWW-KK-E----LSGVAPLYK 85 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHH---Hhcc-cc-c----CCCCCchhH
Confidence 334444444455677888888763 331 244445555654443333222 1111 00 1 111222334
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 143 IFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
.-..++.......+.|-++++++=.+..+.-.-+-+-..+++.++++.+.+....+-..++-.|+.++...++
T Consensus 86 y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~ 158 (327)
T KOG1581|consen 86 YSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPN 158 (327)
T ss_pred HhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecC
Confidence 4455555666666678889999988888999999999999999999999999999999999999998877654
No 100
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.07 E-value=0.36 Score=41.08 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHH
Q 025040 67 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLS 146 (259)
Q Consensus 67 ~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (259)
+..|.++++.+++..+...++.|+-.++... ..-. ... ...+ ....+.|+..++.
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----~~~r------------------a~~-gg~~-yl~~~~Ww~G~lt 73 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----SGLR------------------AGE-GGYG-YLKEPLWWAGMLT 73 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHhh-----hccc------------------ccC-CCcc-hhhhHHHHHHHHH
Confidence 4568888888888777777777765543211 0000 000 0000 1122444555555
Q ss_pred HHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 147 CALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
-..+=+.|+.. ....++...+.++.+.-+...+++.++++|+++....+|++++++|..+...
T Consensus 74 m~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 74 MIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 55565666654 4566788888889999999999999999999999999999999999876543
No 101
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.43 E-value=25 Score=30.12 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHH
Q 025040 71 FLCACVAVLSTSLQQITIGSLQKKYSIGSF-ELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 149 (259)
Q Consensus 71 ~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (259)
...++.-+++.....+..|.....++.+.. .+..++++.+.+.+...-.. .. ...++..+... .-..-..+.
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~--~l---v~~~~l~~~~~--kk~~P~~~l 86 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL--GL---VNFRPLDLRTA--KKWFPVSLL 86 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh--ce---eecCCcChHHH--HHHccHHHH
Confidence 444555555555666666776666665443 23335554444443332211 11 11122222211 000111111
Q ss_pred HHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 150 AVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
-+..-++.-..+++++.....+...+.|+.+.+....+++.+++..-+.....+++|...+.
T Consensus 87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 22222233346899999999999999999999999999999999999999999999987754
No 102
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.45 E-value=2.5 Score=35.43 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=45.9
Q ss_pred HHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHH
Q 025040 157 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVI 209 (259)
Q Consensus 157 ~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~ 209 (259)
-.+++++.+....-+-..+..++++++++++++++-+..-..++.+|+.|..+
T Consensus 119 nnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 119 NNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred cceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 34578999999999999999999999999999999888888888887777654
No 103
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.62 E-value=13 Score=31.41 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 146 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
.+.+-.......|..+..++++...+..-.-.+++.++|..+++.+++..||+|+..+..|++.....
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 44444444444555677778888888888889999999999999999999999999999999876543
No 104
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=76.29 E-value=0.16 Score=41.89 Aligned_cols=71 Identities=25% Similarity=0.419 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 143 IFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
.++.++.-.-.|+....+.++++-+....+.+-..+...+++|++++.+..+.++.|.++++.|+++....
T Consensus 81 Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 81 YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 33344444445555556678888888888888888899999999999999999999999999999876543
No 105
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=74.25 E-value=4.2 Score=28.61 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc
Q 025040 24 SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD 63 (259)
Q Consensus 24 ~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~ 63 (259)
.......+..++.-|+++++..|.+..++++|+.++..+.
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 4456667788888899999999999999999998887653
No 106
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.74 E-value=2.6 Score=29.81 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeec
Q 025040 24 SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT 62 (259)
Q Consensus 24 ~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~ 62 (259)
...+...+..+.+-|++|++..+++..++++|+.++.+.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 456677788888999999999999999999999887654
No 107
>PRK02237 hypothetical protein; Provisional
Probab=73.65 E-value=2.6 Score=29.92 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeec
Q 025040 24 SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT 62 (259)
Q Consensus 24 ~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~ 62 (259)
...+...+..+.+-|+|+++..+++..++++|+.++.+.
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 445566678888999999999999999999999877543
No 108
>PRK02237 hypothetical protein; Provisional
Probab=71.84 E-value=3.9 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=32.2
Q ss_pred hhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 176 KTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 176 ~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
-.+.+.++++.+=+++++...++|..++++|+.+..+.
T Consensus 69 yI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 69 YVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 34566788999999999999999999999999876543
No 109
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=71.39 E-value=3.1 Score=29.36 Aligned_cols=29 Identities=3% Similarity=0.151 Sum_probs=24.8
Q ss_pred HhhhhhhcCCcccccchhhHHHHHHHHHH
Q 025040 181 LTLGWLLFDSALTFKNISGMILAVVGMVI 209 (259)
Q Consensus 181 ~~~s~~~~~e~~s~~~~~G~~lii~g~~~ 209 (259)
..++++.++|++++++..|.+.++.++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45678899999999999999998887653
No 110
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=70.79 E-value=1.4 Score=36.92 Aligned_cols=97 Identities=8% Similarity=0.049 Sum_probs=0.0
Q ss_pred ecccchhHHHHHhhhhHHHHHHHHH-HHhc-cccChhhhhhhhheeecceeeeecc--cccchHHHHHHHHHHHHHHHHH
Q 025040 10 LMLNSVGFYQISKLSMIPVVCVMEW-ILHN-KHYSKEVKMAVVVVVIGVGVCTITD--VKVNAKGFLCACVAVLSTSLQQ 85 (259)
Q Consensus 10 l~~~~~~~~~~l~~~~p~~~~l~~~-l~~~-~~~~~~~~~~~~l~~~Gv~l~~~~~--~~~~~~G~~~~l~a~l~~a~~~ 85 (259)
++-.+-+..+++.++..+.++++-. +++| +-+-+.-.+++++.++-..+...-. .+.-+.|+++.++.++..-.-.
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW 123 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVW 123 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666655554443332 3334 4446666677766666555543221 1223456654443333222222
Q ss_pred HHHHHHHhhcCCCHHHHHHhhh
Q 025040 86 ITIGSLQKKYSIGSFELLSKTA 107 (259)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~ 107 (259)
.|. .+.++++.+.|+++.+..
T Consensus 124 ~Ym-~lLr~~GAs~WtiLaFcL 144 (381)
T PF05297_consen 124 FYM-WLLRELGASFWTILAFCL 144 (381)
T ss_dssp ----------------------
T ss_pred HHH-HHHHHhhhHHHHHHHHHH
Confidence 222 245777888888876653
No 111
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=67.58 E-value=4.3 Score=28.75 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=31.9
Q ss_pred hHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 177 TVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 177 pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
.+.+.++++.+=+++++...++|..++++|+.+..+.
T Consensus 68 I~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 68 IVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 4567888999999999999999999999999876543
No 112
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=67.55 E-value=22 Score=31.09 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=14.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhhH
Q 025040 194 FKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 194 ~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
+.+++..+++++.+.+....+++
T Consensus 288 ~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 288 WNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHh
Confidence 55677777777776665544433
No 113
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=66.64 E-value=6.8 Score=35.59 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=20.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhH
Q 025040 192 LTFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 192 ~s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
++..|++++.++++|+++..+.+++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~ 278 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKG 278 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7889999999999998877655543
No 114
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=60.82 E-value=1.5e+02 Score=29.10 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=32.7
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceee
Q 025040 15 VGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 59 (259)
Q Consensus 15 ~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~ 59 (259)
.+-+.++..+.|+=.+.++...+.+|.+...+.+.+-.++|.+-+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 355677888999999999988877776555566666666676644
No 115
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.02 E-value=9.9 Score=26.49 Aligned_cols=37 Identities=11% Similarity=0.259 Sum_probs=28.8
Q ss_pred hhhhHHH----HhhhhhhcCCcccccchhhHHHHHHHHHHH
Q 025040 174 HMKTVCV----LTLGWLLFDSALTFKNISGMILAVVGMVIY 210 (259)
Q Consensus 174 ~~~pv~~----~~~s~~~~~e~~s~~~~~G~~lii~g~~~~ 210 (259)
.++.+++ ..+|++.++|++.+.++.|..++..|+...
T Consensus 73 ~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 73 TMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 4444444 456889999999999999999988887653
No 116
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=56.41 E-value=1.6e+02 Score=26.77 Aligned_cols=73 Identities=8% Similarity=0.014 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025040 24 SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGSLQKKYS 96 (259)
Q Consensus 24 ~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~ 96 (259)
..++.+..+-=++.|.|+++-|++-+.++++=-+++...=.++-.++....+.|..|-.+-..|.+.+.|..+
T Consensus 306 ~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k 378 (430)
T PF06123_consen 306 GLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWK 378 (430)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3344443333355689999999875555444333322222222335667777788888888888888887543
No 117
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=55.73 E-value=7.9 Score=27.39 Aligned_cols=30 Identities=7% Similarity=-0.059 Sum_probs=24.9
Q ss_pred HHHHHHHhccccChhhhhhhhheeecceee
Q 025040 30 CVMEWILHNKHYSKEVKMAVVVVVIGVGVC 59 (259)
Q Consensus 30 ~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~ 59 (259)
+.++.+++||++++....+.+..+.++.++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456778899999999999999887777654
No 118
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=51.75 E-value=1.2e+02 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=29.1
Q ss_pred hhhhhhhHHHHhhhhhhcCCccc----ccchhhHHHHHHHHHHHHHH
Q 025040 171 VLGHMKTVCVLTLGWLLFDSALT----FKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 171 i~~~~~pv~~~~~s~~~~~e~~s----~~~~~G~~lii~g~~~~~~~ 213 (259)
-.....-+++++.|+.+..+|.. ...++|+-+++.|.......
T Consensus 132 ~w~ii~Gvl~ii~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~~a 178 (185)
T COG3247 132 WWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIFQGIALIAFA 178 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567778888888777743 55667777888887665543
No 119
>PRK11715 inner membrane protein; Provisional
Probab=45.03 E-value=2.4e+02 Score=25.63 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=39.7
Q ss_pred HHhccccChhhhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025040 35 ILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGSLQKKYS 96 (259)
Q Consensus 35 l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~~~v~~~~~~~~~~ 96 (259)
.+.|.|+++-|++-+.++++=-+++...=.++-.++....+.|+.|-.+-..|.....+..+
T Consensus 323 ~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k 384 (436)
T PRK11715 323 LLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWK 384 (436)
T ss_pred HhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44588889999875555444333332222223335667778888888888888888877543
No 120
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=44.06 E-value=71 Score=22.78 Aligned_cols=7 Identities=14% Similarity=-0.045 Sum_probs=3.1
Q ss_pred hhhcccc
Q 025040 235 EEIRLLK 241 (259)
Q Consensus 235 ~~~~~l~ 241 (259)
|++|...
T Consensus 44 E~~p~Yg 50 (107)
T PF15330_consen 44 EDDPCYG 50 (107)
T ss_pred CCCcccc
Confidence 3444443
No 121
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=43.19 E-value=1.9e+02 Score=23.85 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=50.0
Q ss_pred HHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhH
Q 025040 157 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 157 ~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
.-..+++++....++.-++..++....-..+||.+.+.......++++...+.-++.+.+
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 334577778777788888888888888889999999999999999999999888877654
No 122
>PRK02935 hypothetical protein; Provisional
Probab=43.17 E-value=48 Score=23.48 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=20.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhHH
Q 025040 192 LTFKNISGMILAVVGMVIYSWAVEAE 217 (259)
Q Consensus 192 ~s~~~~~G~~lii~g~~~~~~~~~~~ 217 (259)
++...++|.+.++.+.++|-|.-...
T Consensus 40 m~ifm~~G~l~~l~S~vvYFwiGmlS 65 (110)
T PRK02935 40 MTIFMLLGFLAVIASTVVYFWIGMLS 65 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45566789999999999998875443
No 123
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=42.94 E-value=2.3e+02 Score=24.79 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=51.6
Q ss_pred eeecccchhHHHHH-hhhhHHHHHHHHHHHhc-------cccChhhhhhhhheeecceeeeecc-----------cccch
Q 025040 8 FSLMLNSVGFYQIS-KLSMIPVVCVMEWILHN-------KHYSKEVKMAVVVVVIGVGVCTITD-----------VKVNA 68 (259)
Q Consensus 8 ~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~-------~~~~~~~~~~~~l~~~Gv~l~~~~~-----------~~~~~ 68 (259)
++++|+.++..+-+ ..++-.+-.++-.++.+ ++-....+++++++++|+++....+ .+++.
T Consensus 92 l~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~ 171 (344)
T PF06379_consen 92 LAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNF 171 (344)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhh
Confidence 45677766654332 33444444444333332 2334567889999999999976421 12333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 025040 69 -KGFLCACVAVLSTSLQQITIG 89 (259)
Q Consensus 69 -~G~~~~l~a~l~~a~~~v~~~ 89 (259)
.|.+.++++.+..|+.+.-..
T Consensus 172 ~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 172 KKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998887654
No 124
>PF15471 TMEM171: Transmembrane protein family 171
Probab=42.79 E-value=16 Score=30.46 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhH
Q 025040 193 TFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 193 s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
-..|++|-++++.|...+..+.-|
T Consensus 160 LslQImGPlIVl~GLCFFVVAHvK 183 (319)
T PF15471_consen 160 LSLQIMGPLIVLVGLCFFVVAHVK 183 (319)
T ss_pred eehhhhhhHHHHHhhhhhheeeee
Confidence 367999999999999998876543
No 125
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=42.08 E-value=14 Score=31.08 Aligned_cols=67 Identities=13% Similarity=0.367 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcc-cCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhHH
Q 025040 151 VFCNVSQYLCIGR-FSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAE 217 (259)
Q Consensus 151 ~~~~~~~~~~l~~-~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~~ 217 (259)
+..|.+-.++++. ++-..+-+.-.-.++...+++|++.+.+.+..|+....++-+|+.+.+..+.++
T Consensus 75 F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 75 FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 3344444445544 566666678888999999999999999999999999999999999988876554
No 126
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=40.01 E-value=1.9e+02 Score=26.22 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=9.5
Q ss_pred chhhHHHHHHHHHHHHHH
Q 025040 196 NISGMILAVVGMVIYSWA 213 (259)
Q Consensus 196 ~~~G~~lii~g~~~~~~~ 213 (259)
..++.+++++.+..|...
T Consensus 178 F~~a~~v~l~~i~~~~~l 195 (437)
T TIGR00939 178 FGTPCVVQLICIVCYLLL 195 (437)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 127
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=38.69 E-value=3.3e+02 Score=25.36 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=13.3
Q ss_pred ccCceeeehhhhhhhHHHHhhhhhh
Q 025040 163 RFSATSFQVLGHMKTVCVLTLGWLL 187 (259)
Q Consensus 163 ~~~~~~~si~~~~~pv~~~~~s~~~ 187 (259)
|..+....+.....|+-+.+.|.+.
T Consensus 343 Rv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 343 RVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555666666666654
No 128
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=37.55 E-value=34 Score=26.34 Aligned_cols=17 Identities=0% Similarity=0.081 Sum_probs=8.4
Q ss_pred HHhccccChhhhhhhhh
Q 025040 35 ILHNKHYSKEVKMAVVV 51 (259)
Q Consensus 35 l~~~~~~~~~~~~~~~l 51 (259)
.+.|..|+.++..|+.+
T Consensus 91 ~v~KtsP~LYr~LGIfL 107 (193)
T COG4657 91 VVRKTSPTLYRLLGIFL 107 (193)
T ss_pred HHHccCHHHHHHHHHhh
Confidence 33455555555555443
No 129
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=37.49 E-value=36 Score=21.93 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 025040 196 NISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 196 ~~~G~~lii~g~~~~~~~~~ 215 (259)
-+++++++++|..+|..-.+
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35788889999999876543
No 130
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=37.42 E-value=37 Score=27.24 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 025040 200 MILAVVGMVIYSWAVEAE 217 (259)
Q Consensus 200 ~~lii~g~~~~~~~~~~~ 217 (259)
+.+++++...|....+|.
T Consensus 112 lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRS 129 (202)
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 566666677676554443
No 131
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=35.98 E-value=2.2e+02 Score=22.63 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=16.8
Q ss_pred HhhhhhhcCCcccccchhhHHHHHH
Q 025040 181 LTLGWLLFDSALTFKNISGMILAVV 205 (259)
Q Consensus 181 ~~~s~~~~~e~~s~~~~~G~~lii~ 205 (259)
-.+|..+|++..=+...+|.++.++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvA 157 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVA 157 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777776777777776443
No 132
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.00 E-value=16 Score=25.46 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=24.9
Q ss_pred HHHHHHHhccccChhhhhhhhheeecceee
Q 025040 30 CVMEWILHNKHYSKEVKMAVVVVVIGVGVC 59 (259)
Q Consensus 30 ~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~ 59 (259)
+.++.+.+||++++..+.+......|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 456788999999999999988888777654
No 133
>PF15102 TMEM154: TMEM154 protein family
Probab=34.52 E-value=23 Score=26.70 Aligned_cols=18 Identities=6% Similarity=0.058 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 025040 197 ISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 197 ~~G~~lii~g~~~~~~~~ 214 (259)
+++.++++..++++.+.+
T Consensus 66 VLLvlLLl~vV~lv~~~k 83 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYK 83 (146)
T ss_pred HHHHHHHHHHHHheeEEe
Confidence 444555566666655443
No 134
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=34.32 E-value=40 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHh
Q 025040 191 ALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 191 ~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
.+++..++|.++++.|..+|..+.
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~ 27 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRF 27 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999997543
No 135
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=31.81 E-value=53 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=37.8
Q ss_pred ehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 170 QVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 170 si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
...-..+++...+.++.+++++.+..++++.+++..|++...+.+.
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~ 53 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDD 53 (222)
T ss_pred HHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHH
Confidence 3445667888899999999999999999999999999988666544
No 136
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=31.35 E-value=73 Score=24.06 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=11.0
Q ss_pred CceeeehhhhhhhHHHHhhhhhh
Q 025040 165 SATSFQVLGHMKTVCVLTLGWLL 187 (259)
Q Consensus 165 ~~~~~si~~~~~pv~~~~~s~~~ 187 (259)
+....+.+-|+-|.++.+++.++
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555444
No 137
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=31.03 E-value=34 Score=28.77 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=22.5
Q ss_pred cchhHHHHHhhhhHHHHHHHHHHHhcc-ccChh
Q 025040 13 NSVGFYQISKLSMIPVVCVMEWILHNK-HYSKE 44 (259)
Q Consensus 13 ~~~~~~~~l~~~~p~~~~l~~~l~~~~-~~~~~ 44 (259)
.++..+.++..+.-+....++....|+ +.+..
T Consensus 17 ~~i~~Ygl~~~lg~l~a~~~~~~~~~r~~~~~~ 49 (269)
T PRK12437 17 IPVHWYGIIIGLGVLLGLWLATREGKRRGITKD 49 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 567788888888888877777665544 44443
No 138
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=30.58 E-value=1.9e+02 Score=25.06 Aligned_cols=56 Identities=7% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 157 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 157 ~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
..+.+.+++-...++.-.-.+++..++|..+==|++++.-..-..+|-.|+++.++
T Consensus 101 SN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 101 SNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred ccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 34567778888888888888888888888887777777666666666666655443
No 139
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=30.55 E-value=1.5e+02 Score=24.46 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=15.8
Q ss_pred ccccchhhHHHHHHHHHHHH
Q 025040 192 LTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 192 ~s~~~~~G~~lii~g~~~~~ 211 (259)
.....|++-+++++|.++.-
T Consensus 219 ~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 219 FNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 55678999999999987754
No 140
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=30.03 E-value=60 Score=29.95 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 025040 204 VVGMVIYSWA 213 (259)
Q Consensus 204 i~g~~~~~~~ 213 (259)
+.+..+|...
T Consensus 451 ~~~~~~y~~~ 460 (507)
T TIGR00910 451 ALPFIIYALH 460 (507)
T ss_pred HHHHHHHHHh
Confidence 3444555443
No 141
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=29.44 E-value=1.6e+02 Score=27.80 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=9.0
Q ss_pred cchhhHH--HHHHHHHHHHHHhh
Q 025040 195 KNISGMI--LAVVGMVIYSWAVE 215 (259)
Q Consensus 195 ~~~~G~~--lii~g~~~~~~~~~ 215 (259)
.++.|++ ++++....+++..+
T Consensus 529 f~~~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 529 FRIFGIACLVTLALFISIQLLLK 551 (618)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 3444443 34444444444433
No 142
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=27.26 E-value=81 Score=23.34 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=15.7
Q ss_pred HhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 181 LTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 181 ~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
+++|.+.+++ --...++|..+...|++...
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 23344556666677765443
No 143
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=26.33 E-value=4.8e+02 Score=23.40 Aligned_cols=14 Identities=7% Similarity=-0.130 Sum_probs=5.8
Q ss_pred cchhhHHHHHHHHH
Q 025040 195 KNISGMILAVVGMV 208 (259)
Q Consensus 195 ~~~~G~~lii~g~~ 208 (259)
..+++.++.+++..
T Consensus 402 ~f~~~~~~~li~~~ 415 (455)
T TIGR00892 402 IFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhhHHHHHHHH
Confidence 33444444444433
No 144
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=26.04 E-value=5e+02 Score=23.55 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=17.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHhh
Q 025040 192 LTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 192 ~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
-+...++|.++.++.++..+.+..
T Consensus 283 ~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 283 NTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred chHHHHHHHHHHHHHHHHhccccc
Confidence 456678999998888777665543
No 145
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.98 E-value=58 Score=27.33 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=18.6
Q ss_pred ccccchhhHHHHHHHHHHHHHH
Q 025040 192 LTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 192 ~s~~~~~G~~lii~g~~~~~~~ 213 (259)
+|..|+++..+++.|+.+.-+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998876544
No 146
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=25.93 E-value=4e+02 Score=22.41 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhccccChhhh
Q 025040 25 MIPVVCVMEWILHNKHYSKEVK 46 (259)
Q Consensus 25 ~p~~~~l~~~l~~~~~~~~~~~ 46 (259)
.|+++..+.-+++++-.+.-.+
T Consensus 31 rPiv~g~lvGLIlGD~~tGlii 52 (265)
T TIGR00822 31 RPLIACTLVGLILGDLKTGIIL 52 (265)
T ss_pred CcHHHHHHHHHHhCCHHHHHHH
Confidence 4777777777777776655443
No 147
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.85 E-value=63 Score=23.80 Aligned_cols=17 Identities=24% Similarity=0.213 Sum_probs=8.4
Q ss_pred hhhhhhhHHHHhhhhhh
Q 025040 171 VLGHMKTVCVLTLGWLL 187 (259)
Q Consensus 171 i~~~~~pv~~~~~s~~~ 187 (259)
.+.|+-|++..+.+.++
T Consensus 72 ~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 72 FLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455555555444
No 148
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=25.52 E-value=88 Score=19.20 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=30.5
Q ss_pred hhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025040 45 VKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGSLQK 93 (259)
Q Consensus 45 ~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~~~v~~~~~~~ 93 (259)
..+|.++.++|++++..++. |....+++....|...-..|+..+
T Consensus 5 ~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45677788888888766653 666666666677777777776654
No 149
>PHA03049 IMV membrane protein; Provisional
Probab=25.50 E-value=79 Score=20.31 Aligned_cols=20 Identities=10% Similarity=0.381 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 025040 196 NISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 196 ~~~G~~lii~g~~~~~~~~~ 215 (259)
-+++++++++|..+|..-.+
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35678888999999876543
No 150
>PF14851 FAM176: FAM176 family
Probab=25.31 E-value=82 Score=24.07 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 025040 199 GMILAVVGM 207 (259)
Q Consensus 199 G~~lii~g~ 207 (259)
|.++.+..+
T Consensus 33 GLlLtLcll 41 (153)
T PF14851_consen 33 GLLLTLCLL 41 (153)
T ss_pred HHHHHHHHH
Confidence 333333333
No 151
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=25.20 E-value=1.1e+02 Score=17.09 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025040 70 GFLCACVAVLSTSLQQITIGS 90 (259)
Q Consensus 70 G~~~~l~a~l~~a~~~v~~~~ 90 (259)
=+++-++.+.+|++|++..-.
T Consensus 7 iVl~Pil~A~~Wa~fNIg~~A 27 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGRLA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 456778899999999987643
No 152
>PF15345 TMEM51: Transmembrane protein 51
Probab=25.19 E-value=1.1e+02 Score=24.94 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHh
Q 025040 198 SGMILAVVGMVIYSWAVEAEKQ 219 (259)
Q Consensus 198 ~G~~lii~g~~~~~~~~~~~~~ 219 (259)
.|+++.++.+++-...|+|+++
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4778888888887665555443
No 153
>PRK10655 potE putrescine transporter; Provisional
Probab=24.49 E-value=3e+02 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHhhHH
Q 025040 196 NISGMILAVVGMVIYSWAVEAE 217 (259)
Q Consensus 196 ~~~G~~lii~g~~~~~~~~~~~ 217 (259)
...|.+++++|..+|.+.++|+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~ 431 (438)
T PRK10655 410 MLYGSIVTFLGWTLYGLISPRF 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4568888999999987655443
No 154
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=24.47 E-value=5e+02 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHHHHHHHHhh
Q 025040 195 KNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 195 ~~~~G~~lii~g~~~~~~~~~ 215 (259)
....|.++...|..+|.+.++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988876443
No 155
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=24.29 E-value=3e+02 Score=24.69 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=20.6
Q ss_pred hhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhh
Q 025040 174 HMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 174 ~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~ 215 (259)
..-|+++++...++.-..-......+.+++..|..+|...++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 429 (445)
T PRK10644 388 LAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNYN 429 (445)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544443211112334455556777777765543
No 156
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.95 E-value=1.6e+02 Score=19.28 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=5.2
Q ss_pred hhhHHHHHHHH
Q 025040 197 ISGMILAVVGM 207 (259)
Q Consensus 197 ~~G~~lii~g~ 207 (259)
++|+.+++...
T Consensus 9 i~Gm~iVF~~L 19 (79)
T PF04277_consen 9 IIGMGIVFLVL 19 (79)
T ss_pred HHHHHHHHHHH
Confidence 44555444443
No 157
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=22.67 E-value=1.1e+02 Score=27.18 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=14.0
Q ss_pred cccccchhhHHHHHHHHHHHHH
Q 025040 191 ALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 191 ~~s~~~~~G~~lii~g~~~~~~ 212 (259)
......++|.++.+.-++....
T Consensus 295 ~~~~~~iiGli~~~lcilYsal 316 (426)
T KOG2592|consen 295 TFDATNIIGLIFLLLCILYSAL 316 (426)
T ss_pred cccccchHHHHHHHHHHHHHHh
Confidence 3556778998886666554433
No 158
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=22.51 E-value=3.2e+02 Score=22.61 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=22.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 025040 135 MTSGAILFIFLSCALAVFCNVSQYLCIGRFS 165 (259)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (259)
...|+|+++++.|++-++-.+.-|.-+||..
T Consensus 221 ~q~wLwwi~~vlG~ll~lr~~i~YikVrrm~ 251 (262)
T KOG4812|consen 221 GQYWLWWIFLVLGLLLFLRGFINYIKVRRME 251 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHhhHH
Confidence 3478888888888888887666666666643
No 159
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.46 E-value=78 Score=18.53 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=8.0
Q ss_pred cccchhhHHHHHHHHHH
Q 025040 193 TFKNISGMILAVVGMVI 209 (259)
Q Consensus 193 s~~~~~G~~lii~g~~~ 209 (259)
+|..++-.++++.|+..
T Consensus 3 ~wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFA 19 (49)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444555555433
No 160
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=21.93 E-value=6e+02 Score=22.97 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHHH
Q 025040 198 SGMILAVVGMVIYS 211 (259)
Q Consensus 198 ~G~~lii~g~~~~~ 211 (259)
.|.++ +++.++.-
T Consensus 418 ~~~~~-~i~~~~~~ 430 (476)
T PLN00028 418 MGVMI-IACTLPVA 430 (476)
T ss_pred HHHHH-HHHHHHHH
Confidence 34444 44444433
No 161
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=21.92 E-value=63 Score=19.28 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHhhH
Q 025040 197 ISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 197 ~~G~~lii~g~~~~~~~~~~ 216 (259)
+-|..++-+|.++|...+++
T Consensus 8 vSG~GLig~G~Yv~~~ark~ 27 (47)
T PF15055_consen 8 VSGGGLIGAGAYVYAQARKR 27 (47)
T ss_pred ecccchHHHHHHHHHHHhhc
Confidence 45777888888888766543
No 162
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.60 E-value=89 Score=26.50 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 025040 201 ILAVVGMVIYSW 212 (259)
Q Consensus 201 ~lii~g~~~~~~ 212 (259)
+++++|++++..
T Consensus 243 ll~l~Gii~~~~ 254 (281)
T PF12768_consen 243 LLVLIGIILAYI 254 (281)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 163
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.22 E-value=84 Score=18.61 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 025040 200 MILAVVGMVIYSWAVE 215 (259)
Q Consensus 200 ~~lii~g~~~~~~~~~ 215 (259)
..++++|++++.+.++
T Consensus 18 ~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHccc
Confidence 4556777777777554
No 164
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.12 E-value=1.2e+02 Score=23.04 Aligned_cols=6 Identities=17% Similarity=0.025 Sum_probs=2.2
Q ss_pred hHHHHh
Q 025040 177 TVCVLT 182 (259)
Q Consensus 177 pv~~~~ 182 (259)
|.++.+
T Consensus 85 PLl~li 90 (154)
T PRK10862 85 PLVGLF 90 (154)
T ss_pred HHHHHH
Confidence 333333
No 165
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=21.01 E-value=6.8e+02 Score=23.29 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=4.4
Q ss_pred hhhhhheeecc
Q 025040 46 KMAVVVVVIGV 56 (259)
Q Consensus 46 ~~~~~l~~~Gv 56 (259)
..|++.+..|+
T Consensus 255 ~yGll~a~~gv 265 (524)
T PF05977_consen 255 GYGLLLAAFGV 265 (524)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 166
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=20.95 E-value=83 Score=26.65 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=40.1
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecccc
Q 025040 15 VGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK 65 (259)
Q Consensus 15 ~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~ 65 (259)
+.++.++...---.|.+++++++.++++-....+.++.+.|+++-.+++.+
T Consensus 286 A~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 286 ALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred hhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 334444444555678889999999999999999999999999998777644
No 167
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=20.93 E-value=1.6e+02 Score=18.14 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 025040 200 MILAVVGMVIYSWAVEAE 217 (259)
Q Consensus 200 ~~lii~g~~~~~~~~~~~ 217 (259)
++++++|+++-+..--|.
T Consensus 8 IIviVlgvIigNia~LK~ 25 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKY 25 (55)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 456677777766654443
No 168
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=20.71 E-value=5.5e+02 Score=22.06 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=20.1
Q ss_pred hhhhhhheeecceeeeecccccchHHHHHHHHHHHHHHHHHHHHH-HHH
Q 025040 45 VKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIG-SLQ 92 (259)
Q Consensus 45 ~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~l~~a~~~v~~~-~~~ 92 (259)
+++-..+++.|.-+....-.+..+.|....++..........+.. |..
T Consensus 60 ~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~ 108 (305)
T PF03601_consen 60 KLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLF 108 (305)
T ss_pred HHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555543222222334455444444443333333333 444
No 169
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=20.52 E-value=1.7e+02 Score=16.02 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=18.0
Q ss_pred HHHhhhhHHHHHHHHHHHhccccChhh
Q 025040 19 QISKLSMIPVVCVMEWILHNKHYSKEV 45 (259)
Q Consensus 19 ~~l~~~~p~~~~l~~~l~~~~~~~~~~ 45 (259)
.++-..--++..++..++.|+|+.+.+
T Consensus 6 YiLDgiL~iYgiiiT~L~~R~K~~~~~ 32 (33)
T PF11628_consen 6 YILDGILFIYGIIITALYCREKFSKSK 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 344455566777888888999987653
No 170
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.38 E-value=2e+02 Score=20.64 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=14.5
Q ss_pred HHHhhhhhhcCC-cccccchhhHHHHHHHHHHHHHHh
Q 025040 179 CVLTLGWLLFDS-ALTFKNISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 179 ~~~~~s~~~~~e-~~s~~~~~G~~lii~g~~~~~~~~ 214 (259)
++..++|++=+- .-+++..+...++=.|.-+.+..+
T Consensus 58 VGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 58 VGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444555554111 123344444444444444444433
No 171
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=20.20 E-value=6.3e+02 Score=22.58 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=24.5
Q ss_pred hhhhHHHHhhhhhhc-----CCcccccchhhHHHHHHHHHHHHHHhhH
Q 025040 174 HMKTVCVLTLGWLLF-----DSALTFKNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 174 ~~~pv~~~~~s~~~~-----~e~~s~~~~~G~~lii~g~~~~~~~~~~ 216 (259)
..-|+++++.+.++. .++.. ..+.+.+++++|..+|-..+++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 391 GLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhheech
Confidence 344666665555442 33222 1135888888999888765544
No 172
>PLN02776 prenyltransferase
Probab=20.14 E-value=6e+02 Score=22.29 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHhcccCceeeehhhhhhhHHHHhhhhhhcCCcccc
Q 025040 157 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTF 194 (259)
Q Consensus 157 ~~~~l~~~~~~~~si~~~~~pv~~~~~s~~~~~e~~s~ 194 (259)
.|..+||.++..+ .++..--....+.||.--.+.++.
T Consensus 115 vYt~lKR~t~~~~-~lG~~~Ga~ppL~Gw~Avtg~~~~ 151 (341)
T PLN02776 115 VYTPLKQIHPANT-WVGAVVGAIPPLMGWAAASGQLDA 151 (341)
T ss_pred HHHhHccCCchhH-HHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3434788887764 666555556667777776666654
Done!