Query 025040
Match_columns 259
No_of_seqs 138 out of 1273
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 1E-08 3.5E-13 75.8 5.3 61 153-213 43-104 (137)
2 3b5d_A Multidrug transporter E 98.2 2.1E-06 7.3E-11 61.0 6.1 58 155-212 45-103 (110)
3 3b5d_A Multidrug transporter E 98.0 5.4E-07 1.8E-11 64.2 -0.5 61 3-63 44-105 (110)
4 2i68_A Protein EMRE; transmemb 97.9 4.9E-07 1.7E-11 66.7 -2.0 60 2-61 43-103 (137)
5 2jp3_A FXYD domain-containing 60.5 12 0.00041 23.1 3.7 19 197-215 23-41 (67)
6 3l1l_A Arginine/agmatine antip 54.1 26 0.00087 29.9 6.3 22 195-216 409-430 (445)
7 4djk_A Probable glutamate/gamm 29.4 1.6E+02 0.0056 25.3 7.6 13 199-211 451-463 (511)
8 2zxe_G FXYD10, phospholemman-l 24.6 36 0.0012 21.4 1.7 18 197-214 25-42 (74)
9 2hac_A T-cell surface glycopro 16.1 1.4E+02 0.0047 15.5 2.6 32 14-45 1-32 (33)
10 2jo1_A Phospholemman; FXYD1, N 15.8 2.2E+02 0.0075 17.7 4.2 36 197-232 22-57 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.74 E-value=1e-08 Score=75.82 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=43.4
Q ss_pred HHHHHHHHhcccCceeeehh-hhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHH
Q 025040 153 CNVSQYLCIGRFSATSFQVL-GHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 213 (259)
Q Consensus 153 ~~~~~~~~l~~~~~~~~si~-~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~ 213 (259)
..+++..++++.++..+..+ ..+.|+++.++|+++|+|+++..+++|++++++|+++.+..
T Consensus 43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445668999999988787 89999999999999999999999999999999999998653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.23 E-value=2.1e-06 Score=61.03 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=51.0
Q ss_pred HHHHHHhcccCceeeehh-hhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHH
Q 025040 155 VSQYLCIGRFSATSFQVL-GHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 212 (259)
Q Consensus 155 ~~~~~~l~~~~~~~~si~-~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~ 212 (259)
+....++++.+...+..+ ..+.|+.+.++++++|||++|..+++|.++++.|++..+.
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 334457899888888666 8999999999999999999999999999999999998754
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.02 E-value=5.4e-07 Score=64.17 Aligned_cols=61 Identities=10% Similarity=0.166 Sum_probs=54.9
Q ss_pred eeeeeeeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeeecc
Q 025040 3 IAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD 63 (259)
Q Consensus 3 ~~~~n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~ 63 (259)
..+.+.++++.|.+.+..+ ..+.|+++.+++++++||++++.+++++.+.++|+.++...+
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456778999999999888 899999999999999999999999999999999999876543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.94 E-value=4.9e-07 Score=66.74 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=43.8
Q ss_pred ceeeeeeeecccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhheeecceeeee
Q 025040 2 SIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 61 (259)
Q Consensus 2 ~~~~~n~al~~~~~~~~~~l-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~ 61 (259)
++.+.+.++++++++.+..+ .++.|++++++++++++|++++.+++|+++.++|++++..
T Consensus 43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34567889999999988888 8999999999999999999999999999999999998754
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=60.47 E-value=12 Score=23.14 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 025040 197 ISGMILAVVGMVIYSWAVE 215 (259)
Q Consensus 197 ~~G~~lii~g~~~~~~~~~ 215 (259)
+.+.++.+.|+++....+-
T Consensus 23 ifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHH
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 4556667777777654443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=54.08 E-value=26 Score=29.94 Aligned_cols=22 Identities=9% Similarity=0.159 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhH
Q 025040 195 KNISGMILAVVGMVIYSWAVEA 216 (259)
Q Consensus 195 ~~~~G~~lii~g~~~~~~~~~~ 216 (259)
..+.|.++++.|+.+|.+.+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456888889999888775543
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=29.36 E-value=1.6e+02 Score=25.30 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q 025040 199 GMILAVVGMVIYS 211 (259)
Q Consensus 199 G~~lii~g~~~~~ 211 (259)
+..+++.++.++.
T Consensus 451 ~~~~~~~~i~~~~ 463 (511)
T 4djk_A 451 VSFLVVLALPFIL 463 (511)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333343344333
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.62 E-value=36 Score=21.41 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 025040 197 ISGMILAVVGMVIYSWAV 214 (259)
Q Consensus 197 ~~G~~lii~g~~~~~~~~ 214 (259)
+.+.++.+.|+++....+
T Consensus 25 ifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 445566677777655443
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=16.14 E-value=1.4e+02 Score=15.54 Aligned_cols=32 Identities=3% Similarity=0.050 Sum_probs=0.0
Q ss_pred chhHHHHHhhhhHHHHHHHHHHHhccccChhh
Q 025040 14 SVGFYQISKLSMIPVVCVMEWILHNKHYSKEV 45 (259)
Q Consensus 14 ~~~~~~~l~~~~p~~~~l~~~l~~~~~~~~~~ 45 (259)
++..-.++-..--++.+++..++.|+|+.+.+
T Consensus 1 dp~lCYiLDgiL~iYgii~T~Ly~R~K~~~~~ 32 (33)
T 2hac_A 1 DSKLCYLLDGILFIYGVILTALFLRVKFSRSA 32 (33)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCceEeehHHHHHHHHHHHHHHHHHHHhhccC
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=15.83 E-value=2.2e+02 Score=17.68 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHhhccCCCCCCcCch
Q 025040 197 ISGMILAVVGMVIYSWAVEAEKQRNAKTSPQSKNSL 232 (259)
Q Consensus 197 ~~G~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (259)
+.+.++.+.|+++....+-+-+.+++.+........
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~ 57 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCcccc
Done!