Query 025040
Match_columns 259
No_of_seqs 138 out of 1273
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 19:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025040.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025040hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 31.2 7.2 0.00053 24.2 0.9 20 200-219 28-47 (91)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 29.1 1.2E+02 0.009 23.6 12.9 86 27-117 240-327 (383)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 21.4 39 0.0028 15.1 3.0 17 69-85 3-19 (27)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 11.8 1.8E+02 0.013 19.9 5.2 46 166-211 65-110 (199)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 11.0 2.9E+02 0.021 20.4 12.9 36 68-106 60-95 (447)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 7.3 1.3E+02 0.0094 18.2 2.5 20 198-217 37-56 (100)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 6.0 1.6E+02 0.011 13.2 3.4 9 34-42 20-28 (30)
8 d1v54k_ f.23.5.1 (K:) Mitochon 4.4 2.9E+02 0.021 14.3 2.6 28 72-99 12-39 (49)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.4 2.3E+02 0.017 17.2 2.3 17 200-216 45-61 (107)
10 d1iwga8 f.35.1.1 (A:513-566,A: 3.6 6.3E+02 0.046 17.1 12.7 139 87-236 15-153 (222)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=31.18 E-value=7.2 Score=24.23 Aligned_cols=20 Identities=5% Similarity=-0.066 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhHHHh
Q 025040 200 MILAVVGMVIYSWAVEAEKQ 219 (259)
Q Consensus 200 ~~lii~g~~~~~~~~~~~~~ 219 (259)
..+.+.|.++|...|.|+++
T Consensus 28 v~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHhhheeeeccC
Confidence 34566777777776665543
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=29.10 E-value=1.2e+02 Score=23.61 Aligned_cols=86 Identities=9% Similarity=-0.085 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhccccChhhhhhhhheeecceeeeecccccchHH-HHHHHHHH-HHHHHHHHHHHHHHhhcCCCHHHHHH
Q 025040 27 PVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKG-FLCACVAV-LSTSLQQITIGSLQKKYSIGSFELLS 104 (259)
Q Consensus 27 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G-~~~~l~a~-l~~a~~~v~~~~~~~~~~~~~~~~~~ 104 (259)
.++..+...+.++|.+......-. ++|++-++......++.+ .+.+.+++ +|+-.+..+.+|.. --||.....
T Consensus 240 ~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~---iDD~~~~~~ 314 (383)
T d1u7ga_ 240 ILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR---VDDPCDVFG 314 (383)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC---SCCGGGHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc---cccccceEe
Confidence 333333444566777766544332 335544443332233333 44444433 33333333333322 235555555
Q ss_pred hhhhHHHHHHHHH
Q 025040 105 KTAPIQAVSLLVL 117 (259)
Q Consensus 105 ~~~~~~~~~~~~~ 117 (259)
.....+....+..
T Consensus 315 vHg~~Gi~G~l~~ 327 (383)
T d1u7ga_ 315 VHGVCGIVGCIMT 327 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ehhhhHHHHHHHH
Confidence 5544455444444
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.37 E-value=39 Score=15.11 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025040 69 KGFLCACVAVLSTSLQQ 85 (259)
Q Consensus 69 ~G~~~~l~a~l~~a~~~ 85 (259)
.|.+.+-++.+.||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57788888888888875
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=11.79 E-value=1.8e+02 Score=19.94 Aligned_cols=46 Identities=17% Similarity=0.059 Sum_probs=27.9
Q ss_pred ceeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHH
Q 025040 166 ATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 211 (259)
Q Consensus 166 ~~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~ 211 (259)
+.........-.+...+....+++.+++.....+..+.+...+-+.
T Consensus 65 ~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 65 ATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 3333333334444455555677888888888888777666655443
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.98 E-value=2.9e+02 Score=20.36 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhh
Q 025040 68 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKT 106 (259)
Q Consensus 68 ~~G~~~~l~a~l~~a~~~v~~~~~~~~~~~~~~~~~~~~ 106 (259)
..|.+... ..+.+++......++.++. .+.......
T Consensus 60 ~~g~~~s~-~~~~~~~~~~~~G~l~Dr~--g~r~~~~~~ 95 (447)
T d1pw4a_ 60 DLGFALSG-ISIAYGFSKFIMGSVSDRS--NPRVFLPAG 95 (447)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHS--CHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHc--CchHHHHHH
Confidence 34544332 3344455555555555543 334444433
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.35 E-value=1.3e+02 Score=18.21 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 025040 198 SGMILAVVGMVIYSWAVEAE 217 (259)
Q Consensus 198 ~G~~lii~g~~~~~~~~~~~ 217 (259)
.++.+++.+...|...++|+
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 33445566666666665543
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.01 E-value=1.6e+02 Score=13.21 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=5.7
Q ss_pred HHHhccccC
Q 025040 34 WILHNKHYS 42 (259)
Q Consensus 34 ~l~~~~~~~ 42 (259)
.+++||+++
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 356677764
No 8
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.42 E-value=2.9e+02 Score=14.31 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 025040 72 LCACVAVLSTSLQQITIGSLQKKYSIGS 99 (259)
Q Consensus 72 ~~~l~a~l~~a~~~v~~~~~~~~~~~~~ 99 (259)
+++-.+.+|.+.+....-...-+.+.+|
T Consensus 12 vL~~Ga~fc~avW~yv~TQ~gI~WnlSP 39 (49)
T d1v54k_ 12 VLASGATFCVAVWVYMATQIGIEWNPSP 39 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCCCC
T ss_pred EEecccchhhhhhhheeeeeeeeecccc
Confidence 4455566677766655543333333333
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.36 E-value=2.3e+02 Score=17.24 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhH
Q 025040 200 MILAVVGMVIYSWAVEA 216 (259)
Q Consensus 200 ~~lii~g~~~~~~~~~~ 216 (259)
..+.+.|...|...+.|
T Consensus 45 I~~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 45 VTIFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 34445666666655544
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.63 E-value=6.3e+02 Score=17.10 Aligned_cols=139 Identities=7% Similarity=-0.143 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHhhhhHHHHHHHHHHHhhhhhccCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 025040 87 TIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSA 166 (259)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 166 (259)
+.+...+..+.....+..|............ ....+...+.... ......+.-.+.....+...+....
T Consensus 15 y~~~v~~~~~r~~r~~~~y~~l~~g~~~~f~-----~lp~~fl~~~~~~------~~~~~~la~i~i~liL~~~frS~~~ 83 (222)
T d1iwga8 15 YTDSVGGILRSTGRYLVLYLIIVVGMAYLFV-----RLPSSFLPDSGNQ------APSLYAISLIVVFLCLAALYESWSI 83 (222)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-----SSCBCSSCCCCTT------HHHHHHHHHHHHHHHHHHTTCSSSH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhheeeec-----cCcHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred eeeehhhhhhhHHHHhhhhhhcCCcccccchhhHHHHHHHHHHHHHHhhHHHhhccCCCCCCcCchhhhh
Q 025040 167 TSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQRNAKTSPQSKNSLTEEE 236 (259)
Q Consensus 167 ~~~si~~~~~pv~~~~~s~~~~~e~~s~~~~~G~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (259)
...-+....-.+.+.+.+..+.+.+++....+|.++.+.-.+-+...--.+.++.++....+..+.-.+.
T Consensus 84 ~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a 153 (222)
T d1iwga8 84 PFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDA 153 (222)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHH
Done!