RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025041
(259 letters)
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 132 bits (332), Expect = 9e-39
Identities = 94/208 (45%), Positives = 141/208 (67%), Gaps = 5/208 (2%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
RGAL+VLEG+DR GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S ++
Sbjct: 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVAF+ AK ++WCK P++GL
Sbjct: 62 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 121
Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
PD VL+L + AA+RG +G ERYE+ FQ + +C+ L +WK++DA +SI
Sbjct: 122 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 181
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
E V + ++ + D + KP LW
Sbjct: 182 EAVHEDIRVLSEDAIATA-TEKPLGELW 208
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 111 bits (277), Expect = 2e-30
Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 16/216 (7%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMI-SAYLSNQSHL 112
RG L+++EGLDR GKT+QC+ L L+ L +FP+R+T +G +I + L
Sbjct: 2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDDSFQL 58
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGID---IEWCKAPE 169
D IHLLFSANRWE ++ L G +++DRY YSGVA+S+AKG + ++WC P+
Sbjct: 59 SDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPD 118
Query: 170 IGLLAPDSVLYLDIPPEKAAER-GGYGGERYEHLEFQRKVAQCYQML-------RDSSWK 221
+GLL PD L+L G+G ERYE ++FQ KV Q + L D S
Sbjct: 119 VGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESIT 178
Query: 222 IIDA-CQSIEDVEKQLKEIVLDQVTACKKGKPFSLL 256
I+D + I++VE + +IV ++ FS
Sbjct: 179 IVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFSFF 214
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 105 bits (262), Expect = 2e-28
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 16/207 (7%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHL 112
R +V+EGL+ GKT+ + ++ LE LG + R P T ++ S L +S
Sbjct: 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 60
Query: 113 DDHT-----IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGI----DIE 163
D+ + + ++A ++++ L GT +I DR+ S A+ +
Sbjct: 61 DEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLA 120
Query: 164 WCKAPEIGLLAPDSVLYLDIPPEKAAER----GGYGGERYEHLEFQRKVAQCYQML--RD 217
+ +G PD LYLD+ PE +R G E +F + Y L +D
Sbjct: 121 TLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD 180
Query: 218 SSWKIIDACQSIEDVEKQLKEIVLDQV 244
S IDA Q +E V ++ V V
Sbjct: 181 KSIHTIDATQPLEAVMDAIRTTVTHWV 207
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 94.7 bits (234), Expect = 2e-24
Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 26/206 (12%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD--- 113
L+ +EG+D GK + +L G SV FP SV I+A + H D
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61
Query: 114 -DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCK 166
+ + LF+ +R ++ + +I+DRY S A+S+A+ G W +
Sbjct: 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121
Query: 167 APE---IGLLAPDSVLYLDIPPEKAAERGGYGGERYE---------HLEFQRKVAQCYQM 214
E +GL PD + L + E A ER +R E Q++ Y
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAE 181
Query: 215 LRD----SSWKIIDACQSIEDVEKQL 236
L W ++ A + L
Sbjct: 182 LAAQGWGGRWLVVGADVDPGRLAATL 207
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 86.2 bits (212), Expect = 8e-21
Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 47/236 (19%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVG-------------- 99
R + +EG GK++ + L E E S
Sbjct: 1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 60
Query: 100 --------QMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSG 151
+ + Q++ I ++ + + + L ++ DRY ++
Sbjct: 61 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 120
Query: 152 VAFSSAKGIDIEWCKAPEIGLLA---------PDSVLYLDIPPEKAAERGGYGGERYEH- 201
+ S + EW + D ++YL PE R G E
Sbjct: 121 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQG 180
Query: 202 --LEFQRKVAQCYQ-------------MLRDSSWKIIDACQSIEDVEKQLKEIVLD 242
LE+ K+ ++ L++ +D + +D + L E V +
Sbjct: 181 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKE 236
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 74.3 bits (181), Expect = 8e-17
Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 7/191 (3%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD--RTTSVGQMISAYLSNQSHLDD 114
+ ++ G+ GK++ +++ L+ G + ++ + D T++ + L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYS--GVAFSSAKGIDIEWCKAPEIGL 172
L A + + + G + E + L
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122
Query: 173 LAPDSVLYLDIPPEKAAERGGYGGE--RYEHLEFQRKVAQCYQMLRDSSWKIID-ACQSI 229
A ++ + R Y E E + F R A +L S+ K+I
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDP 182
Query: 230 EDVEKQLKEIV 240
++ +
Sbjct: 183 SIAANEIIRSM 193
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 67.7 bits (164), Expect = 2e-14
Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 11/191 (5%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
+VV+ G+ G T+ + L G + ++ F V ++ + S D
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS----VMFEVAKEENLVSDRDQMR 58
Query: 117 IHLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIE----WCKAPEIG 171
+ R +K A++ + + VD +S G+ I
Sbjct: 59 KMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIV 118
Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKVAQCYQMLRDSSWKIID-ACQSI 229
+ + + ++ R E H R A Y +L ++ KI+ +
Sbjct: 119 VETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLL 178
Query: 230 EDVEKQLKEIV 240
+ ++L ++
Sbjct: 179 DQAVEELTNVL 189
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 66.2 bits (160), Expect = 1e-13
Identities = 21/228 (9%), Positives = 56/228 (24%), Gaps = 44/228 (19%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTT------SVGQMISAYLSNQS 110
+ +EG GK++ L + E + L +
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63
Query: 111 HLDDH----TIHLLFSANRWE---KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGID-- 161
+ + T +R + + + I +R YS + +
Sbjct: 64 YREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123
Query: 162 -------------IEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE---HLEFQ 205
+ + +YL P+ +R E L +
Sbjct: 124 SLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYL 183
Query: 206 RKVAQCYQ-------------MLRDSSWKIIDACQSIEDVEKQLKEIV 240
++ ++ L + ++D + + ++++
Sbjct: 184 EQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLM 231
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 57.7 bits (138), Expect = 8e-11
Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 17/190 (8%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
++ V++EG GKT+ + Y + E V + Y +
Sbjct: 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 66
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKG-------IDIEWC 165
++ + + + ++ RY + + ++ +
Sbjct: 67 MPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126
Query: 166 KAPEIGLLAPDSVLYLDIPPEKAAER---GGYGGERYEHLEFQRKVAQCY-------QML 215
E + D ++YL PE A ER E L++ +++ + + +
Sbjct: 127 FIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRP 186
Query: 216 RDSSWKIIDA 225
+ ++DA
Sbjct: 187 QSCKVLVLDA 196
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 56.2 bits (135), Expect = 7e-10
Identities = 22/200 (11%), Positives = 48/200 (24%), Gaps = 37/200 (18%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD---RTTSVGQMISAYLSNQSHLD- 113
+ L+G GKT+ L + + + L P R + I Q+
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLN 67
Query: 114 -----------------------DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYS 150
+ + +++ + ++ DR+ +
Sbjct: 68 GDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIA 127
Query: 151 GV---AFSSAKGIDIEWCK-----APEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH- 201
S D+ +++ + R E
Sbjct: 128 STICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETV 187
Query: 202 -LEFQRKVAQCYQMLRDSSW 220
L F + Y ML ++
Sbjct: 188 NLPFVMVLRNVYIMLINTII 207
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 55.0 bits (132), Expect = 1e-09
Identities = 26/248 (10%), Positives = 66/248 (26%), Gaps = 49/248 (19%)
Query: 58 VVLEGLDRCGKTSQCSRLLSY-------------------------LEGLGHSVELWRFP 92
+ L+G+ GK++ + S + G+ + +
Sbjct: 9 IYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQG 68
Query: 93 DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGV 152
+ +I+A+ QS + L + ++ + TL+ DR+ +
Sbjct: 69 NLAVDDAALITAHY--QSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVAST 126
Query: 153 AFSSAKGIDIEWCKAPEI--------GLLAPDSVLYLDIPPEKAAERGGYGGERYEH--L 202
A + + +++ + E+ R E +
Sbjct: 127 VCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTRARIGEQIDI 186
Query: 203 EFQRKVAQCYQMLRDSS------------WKIIDACQSIEDVEKQLKEIVLDQVTACKKG 250
+ Y ML ++ W + + ++V+
Sbjct: 187 TLIATLRNVYFMLVNTCHFLRSGRVWRDGWGELPTSCGAYKHRATQMDAFQERVSPELGD 246
Query: 251 KPFSLLWS 258
F+L +
Sbjct: 247 TLFALFKT 254
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 52.7 bits (126), Expect = 1e-08
Identities = 20/195 (10%), Positives = 50/195 (25%), Gaps = 33/195 (16%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG-----LGHSVELWRFPDRTTSVGQMISAYLSN 108
V ++G GKT+ L++ + + WR + ++ + +
Sbjct: 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRL 62
Query: 109 QSHLDDHTIHLLFSAN------------------RWEKRSMMEAKLKAGTTLIVDRYSYS 150
+ + + TLI DR+ +
Sbjct: 63 DQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIA 122
Query: 151 GV---AFSSAKGIDIEWCKAPEI-----GLLAPDSVLYLDIPPEKAAERGGYGGERYEH- 201
+ + + L +++ +P ++ +R E
Sbjct: 123 ALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERL 182
Query: 202 -LEFQRKVAQCYQML 215
L + + Y +L
Sbjct: 183 DLAMLAAIRRVYGLL 197
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 44.5 bits (104), Expect = 3e-06
Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 14/185 (7%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGH---SVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
+VL GL GK +Q ++++ G+ H T +G Y+ + D
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAY-GIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61
Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
+ + + + + + G +++ ++
Sbjct: 62 EVTIGIVRERLSKDD--CQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDV 119
Query: 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEK 234
L D A R +++ + + Y+ + + I+ Q +E V
Sbjct: 120 LMERLTADDNEATVANR------LEVNMKQMKPLVDFYE--QKGYLRNINGEQDMEKVFA 171
Query: 235 QLKEI 239
++E+
Sbjct: 172 DIREL 176
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 42.2 bits (98), Expect = 2e-05
Identities = 33/193 (17%), Positives = 56/193 (29%), Gaps = 26/193 (13%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGH---SVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
V+L G GK +Q +L L G+ R + T +G YL +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
+ L A I+D Y S + E
Sbjct: 62 DLTNELVDDRLNNP--------DAANGFILDGYPRS-------VEQAKALHEMLERRGTD 106
Query: 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRD-------SSWKIIDACQ 227
D+VL + E ER G + + + Y+ K +DA
Sbjct: 107 IDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVG 166
Query: 228 SIEDVEKQLKEIV 240
++++V + +
Sbjct: 167 TMDEVFARALRAL 179
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 41.8 bits (97), Expect = 2e-05
Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 33/196 (16%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGH--SVELWRFPDRT-TSVGQMISAYLSNQSHLDD 114
++L G GK +Q ++ G+ + ++ R ++ + +G+ + + D
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
+ L ++ I A + +
Sbjct: 62 ELVIALVKERIAQE-------------------DCRNGFLLDGFPRTIPQADAMKEAGIN 102
Query: 175 PDSVLYLDIPPEKAAERGGYGGERY-------EHLEFQRKVAQCYQ---MLRDSSWKIID 224
D VL D+P E +R + E+ + + Y ++ + +D
Sbjct: 103 VDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVD 162
Query: 225 ACQSIEDVEKQLKEIV 240
+ + +V L++I+
Sbjct: 163 GTKPVAEVRADLEKIL 178
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 41.4 bits (96), Expect = 3e-05
Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 16/187 (8%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGH--SVELWRF-PDRTTSVGQMISAYLSN-QSHLD 113
+VL GL GK +Q R++ G H + +++R T +G +++ D
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKY-GTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
+ TI ++ + + + G IE ++
Sbjct: 62 EVTIGIVRERLSKSDCDN---GFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKE 118
Query: 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVE 233
+ L D P+ R ++ + Y I+ + I+DV
Sbjct: 119 ELIARLTADDNPDTVTNR------LEVNMNQTAPLLAFYD--SKEVLVNINGQKDIKDVF 170
Query: 234 KQLKEIV 240
K L I+
Sbjct: 171 KDLDVIL 177
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 40.7 bits (94), Expect = 5e-05
Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 28/199 (14%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI 117
V + G GK +QC+R++ G H S G+++ N I
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKY-GYTH-----------LSAGELLRDERKNPDSQYGELI 51
Query: 118 HLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL---LA 174
+ + + LK + + + + + +
Sbjct: 52 EKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD 111
Query: 175 PDSVLYLDIPP----EKAAERGGYGGERYEHLEFQRKVAQCY----QMLRD-----SSWK 221
VL+ D E+ ERG G ++ E K Q Y + + D K
Sbjct: 112 VSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVK 171
Query: 222 IIDACQSIEDVEKQLKEIV 240
IDA +S+++V ++ +I
Sbjct: 172 KIDASKSVDEVFDEVVQIF 190
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 40.3 bits (93), Expect = 6e-05
Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 18/186 (9%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGH---SVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
+VL G GK +Q L H L + T +G + + D
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 63
Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
+ + + + G + + + K L
Sbjct: 64 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEK-----------LDQMLKEQGTPLEK 112
Query: 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRK-VAQCYQMLRDSSWKIIDACQSIEDVE 233
+ D +R Q + + Y+ + W +DA Q V
Sbjct: 113 AIELKVDDELLVARITNADALKKRLAAYHAQTEPIVDFYK--KTGIWAGVDASQPPATVW 170
Query: 234 KQLKEI 239
+
Sbjct: 171 ADILNK 176
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 35.8 bits (81), Expect = 0.002
Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 14/183 (7%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI 117
V + G + GK+ ++L + F +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE------------QAMQY 57
Query: 118 HLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDS 177
+R + A + +D + AF I D
Sbjct: 58 SDYPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDV 117
Query: 178 VLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLK 237
+ L E + G + + +FQ+ + + + + I++ S D Q+K
Sbjct: 118 TILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKV-PYIEIES-PSYLDRYNQVK 175
Query: 238 EIV 240
++
Sbjct: 176 AVI 178
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 35.7 bits (81), Expect = 0.003
Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 35/202 (17%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGH----SVELWRFPDRTTSVGQMISAYLSNQSHLD 113
+ + G GK +QC +L+ H + + G++I + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 69
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
+ ++ + ++D + ++ + E ++
Sbjct: 70 QEITL------ALLRNAISDNVKANKHKFLIDGFPR-----------KMDQAISFERDIV 112
Query: 174 APDSVLYLDIPPEKAAER----GGYGGERYEHLEFQRKVAQCYQMLRD---------SSW 220
+L+ D P + ER G G +++E +K ++ S
Sbjct: 113 ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKV 172
Query: 221 KIIDACQSIEDVEKQLKEIVLD 242
+ +S+EDV K +++ + D
Sbjct: 173 VRVRCDRSVEDVYKDVQDAIRD 194
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 34.2 bits (77), Expect = 0.006
Identities = 26/189 (13%), Positives = 54/189 (28%), Gaps = 26/189 (13%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
+ VL G+ GK++ S + L F D + +++ L+
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQLH--------AAFLDGDFLHPRRNIEKMASGEPLN 56
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
D W + A + S + S+ K + +
Sbjct: 57 DDDRK------PWLQALNDAAF------AMQRTNKVSLIVCSALKKHYRDLLRE----GN 100
Query: 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML--RDSSWKIIDACQSIED 231
S +YL + R + + + Q ++ ++D Q +E
Sbjct: 101 PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEG 160
Query: 232 VEKQLKEIV 240
V E++
Sbjct: 161 VVASTIEVI 169
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 33.8 bits (76), Expect = 0.011
Identities = 31/201 (15%), Positives = 67/201 (33%), Gaps = 28/201 (13%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
S+ +V + G GK +QC+ ++ G H D Q S + +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDF-GWVH----LSAGDLLRQEQQSGSKDGEMIATM 58
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
+ + ++ ++A +VD + + +S + ++
Sbjct: 59 IKNGEIVPSIVTVKLLKNAIDANQGKN--FLVDGFPRNEENNNSWEENMKDFVD------ 110
Query: 173 LAPDSVLYLDIPPEKAAER----GGYGGERYEHLEFQRKVAQCYQMLRD---------SS 219
VL+ D P E +R G G +++E +K + +
Sbjct: 111 --TKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDK 168
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
KII A + + +V ++ +
Sbjct: 169 VKIIPANRDVNEVYNDVENLF 189
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 33.4 bits (75), Expect = 0.015
Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 22/202 (10%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
+G VL G GK +Q +L + H + G M+ A +++ S L
Sbjct: 2 KGVRAVLLGPPGAGKGTQAPKLAKNF-CVCH-----------LATGDMLRAMVASGSELG 49
Query: 114 DHTIHLL---FSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEI 170
+ + ++E L+ A+ +D K E
Sbjct: 50 KKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEK 109
Query: 171 GLLAPDSVLYLDIPPEKAAERGGYGGERYE-----HLEFQRKVAQCYQMLRDSS-WKIID 224
+ + + + R + + + + + + ID
Sbjct: 110 LDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAID 169
Query: 225 ACQSIEDVEKQLKEIVLDQVTA 246
A Q+ + V + + T+
Sbjct: 170 ASQTPDVVFASILAA-FSKATS 190
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 32.6 bits (73), Expect = 0.023
Identities = 23/191 (12%), Positives = 47/191 (24%), Gaps = 25/191 (13%)
Query: 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH 111
D G +++L G GK++ L + S+Q +
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIG 171
+ K G +I+D G+
Sbjct: 61 R----------MIMQIAADVAGRYAKEGYFVILD-------------GVVRPDWLPAFTA 97
Query: 172 LLAPDSVLYLDIPPEKAAER-GGYGGERYEHLEFQRKVAQCYQMLRDSSWKIID-ACQSI 229
L P + L +A ER GG+ + + L ++ + +
Sbjct: 98 LARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDT 157
Query: 230 EDVEKQLKEIV 240
+ + +
Sbjct: 158 DQALQSAINAL 168
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 32.6 bits (73), Expect = 0.027
Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 29/201 (14%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
+ ++ + G GK +QC +++ G H S G ++ A +S+ S
Sbjct: 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY-GYTH-----------LSTGDLLRAEVSSGSAR 53
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
++ + +E L +V + S +++ + E +
Sbjct: 54 GKMLSEIMEK----GQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI 109
Query: 173 LAPDSVLYLDIPPEKAAER----GGYGGERYEHLEFQRKVAQCYQML---------RDSS 219
P +LY+D PE +R G G ++ E +K + Y +
Sbjct: 110 GQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGI 169
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
+ ++A S++DV Q+ +
Sbjct: 170 VRKVNAEGSVDDVFSQVCTHL 190
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.4 bits (70), Expect = 0.074
Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 19/186 (10%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGH--SVELWRFPDRTTSVGQMISAYLSNQSHLDDH 115
V++ G GK +QC + + L H + +L R S + + L
Sbjct: 6 VMISGAPASGKGTQCELIKTKY-QLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 64
Query: 116 TIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAP 175
I + R + E ++D Y S + + ++I L P
Sbjct: 65 EIVVNMVKERLRQPDAQENGW------LLDGYPRSYSQAMALETLEIRPDTFIL--LDVP 116
Query: 176 DSVLYLDIPPEKAAERGGYGGERYEHLEFQRK-VAQCYQMLRDSSWKIIDACQSIEDVEK 234
D +L + + E R E + + Y+ + + +++ V
Sbjct: 117 DELLVERVVFDDTEE---KVKLRLETYYQNIESLLSTYENI----IVKVQGDATVDAVFA 169
Query: 235 QLKEIV 240
++ E++
Sbjct: 170 KIDELL 175
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.6 bits (65), Expect = 0.23
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 6/187 (3%)
Query: 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
G +VVL G GK++ L + L SV R V + +D
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVD------YHFIDP 55
Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
L + + + L TL + + +D+ +A + +
Sbjct: 56 TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE 115
Query: 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEK 234
+V + R G + +R ++ + + + +E
Sbjct: 116 AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACA 175
Query: 235 QLKEIVL 241
+L +++
Sbjct: 176 ELVSLLV 182
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.6 bits (60), Expect = 1.3
Identities = 23/188 (12%), Positives = 47/188 (25%), Gaps = 14/188 (7%)
Query: 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDH 115
L+V+ GL GKT +L YL +G + + ++
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN-VGQYRRDMVKTYKSFEFFLPDNEE 61
Query: 116 TIHLLFSANRWE-KRSMMEAKLKAGTTLIV--------DRYSYSGVAFSSAKGIDIEWCK 166
+ + + G + R +
Sbjct: 62 GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
Query: 167 APEIGLLAPD-SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSW---KI 222
+ ++A + + L P + + +E + +D KI
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKI 181
Query: 223 IDACQSIE 230
+D QS
Sbjct: 182 MDVGQSYV 189
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.4 bits (59), Expect = 1.8
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL 106
R + ++ GL R GK+S ++ L ++L +F +R + L
Sbjct: 26 GLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLEL 80
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.9 bits (58), Expect = 2.1
Identities = 13/135 (9%), Positives = 28/135 (20%), Gaps = 10/135 (7%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
+++L G GK+ L S L + + S+ + + + + +
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV-------DSLIEAMPLKMQSAEGGIEFD 57
Query: 117 IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD 176
S + F W
Sbjct: 58 ADGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDL---DV 114
Query: 177 SVLYLDIPPEKAAER 191
+ + A R
Sbjct: 115 LWVGVRCDGAVAEGR 129
>d2gmha3 d.58.1.6 (A:483-584) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 102
Score = 26.0 bits (57), Expect = 2.4
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 93 DRTTSVGQMISAYLSNQSHLDDHTIHL 119
D +SV LS +H D HL
Sbjct: 2 DLLSSV------ALSGTNHEHDQPAHL 22
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 26.4 bits (57), Expect = 3.6
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 23/100 (23%)
Query: 128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEK 187
K +ME +LK G +IV + G S + L+A K
Sbjct: 4 KEKLME-QLKGG--IIVSCQALPGEPLYSET--------GGIMPLMA------------K 40
Query: 188 AAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQ 227
AA+ G G R + +++ + K Q
Sbjct: 41 AAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQ 80
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 25.3 bits (54), Expect = 6.8
Identities = 23/191 (12%), Positives = 44/191 (23%), Gaps = 12/191 (6%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMI-SAYLSNQSHLDDH 115
VVL G GK++ +L + R G+ Y +
Sbjct: 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFS--VSHTTRNPRPGEEDGKDYYFVTREMMQR 59
Query: 116 TIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAP 175
I E + K + + I+ P
Sbjct: 60 DIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLC------P 113
Query: 176 DSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDAC---QSIEDV 232
+ + +R E +R A M + D ++
Sbjct: 114 IYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKA 173
Query: 233 EKQLKEIVLDQ 243
LK+ + ++
Sbjct: 174 YATLKQALSEE 184
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.416
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 966,654
Number of extensions: 42862
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 40
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)