BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025042
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NNL|A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase
pdb|1NNL|B Chain B, Crystal Structure Of Human Phosphoserine Phosphatase
Length = 225
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 124/180 (68%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+ CG AV+E T RAMGG+VPF+ AL R
Sbjct: 6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTER 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGI 194
L+L +PS QVQ + ++PP L+PGI E +LISGGFR ++ +AS L I
Sbjct: 66 LALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNI 125
Query: 195 PPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLE 254
P N+FAN+L F +GE+ GFD +PT+ SGGK ++ +++ +K + MIGDGATD+E
Sbjct: 126 PATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGATDME 185
>pdb|1L8L|A Chain A, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8L|B Chain B, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|A Chain A, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|B Chain B, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
Length = 225
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 124/180 (68%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+ CG AV+E T RAMGG+VPF+ AL R
Sbjct: 6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTER 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGI 194
L+L +PS QVQ + ++PP L+PGI E +LISGGFR ++ +AS L I
Sbjct: 66 LALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNI 125
Query: 195 PPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLE 254
P N+FAN+L F +GE+ GFD +PT+ SGGK ++ +++ +K + MIGDGATD+E
Sbjct: 126 PATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKFLKEKFHFKKIIMIGDGATDME 185
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ FD DST+ +E IDE+A G + V + T AM G + FE++L R+SL K + +
Sbjct: 8 ILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQL 204
V+ +++ P + G +E ++SGGF +N I LG+ + FAN+L
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRL 123
Query: 205 LFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKV--LAMIGDGATDLEVSIF 258
+ K G+ G D + K +++I K + +GDGA D +S+F
Sbjct: 124 IVK-DGKLTG-DVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGAND--ISMF 175
>pdb|3KD3|A Chain A, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
pdb|3KD3|B Chain B, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
Length = 219
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 9/176 (5%)
Query: 86 VCFDVDSTVCVDEGIDELAEFC-----GAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
+ FD DST+ E ++ + E K + T G + F ++L RL++ P
Sbjct: 7 IIFDFDSTLIKKESLELILEPILQKSPAKLKEIEYITNLGXQGDISFRDSLQKRLAIASP 66
Query: 141 SLSQVQDFLEKRPPRL-SPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENI 199
+ +++F K P L + GI E ++ SGG I P A L IP ENI
Sbjct: 67 TKQSIKEFSNKYCPNLLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENI 126
Query: 200 FANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEV 255
FA + ++ S G F D + S K +A + + +V+A IGDG TD ++
Sbjct: 127 FAVETIWNSDGSFKELDNSNGACDS--KLSAFDKAKGLIDGEVIA-IGDGYTDYQL 179
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ FD DST+ +E IDE+A G + V + T A G + FE++L R+SL K + +
Sbjct: 8 ILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQL 204
V+ +++ P + G +E ++SGGF +N I LG+ + FAN+L
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRL 123
Query: 205 LFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKV--LAMIGDGATDL 253
+ K G+ G D + K +++I K + +GDGA D+
Sbjct: 124 IVK-DGKLTG-DVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDI 172
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ F DST+ +E IDE+A G + V + T AM G + FE++L R+SL K + +
Sbjct: 8 ILFXFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQL 204
V+ +++ P + G +E ++SGGF +N I LG+ + FAN+L
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRL 123
Query: 205 LFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKV--LAMIGDGATDLEVSIF 258
+ K G+ G D + K +++I K + +GDGA D +S+F
Sbjct: 124 IVK-DGKLTG-DVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGAND--ISMF 175
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ F+ DST+ +E IDE+A G + V + T A G + FE++L R+SL K + +
Sbjct: 8 ILFNFDSTLVNNETIDEIAREAGVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQL 204
V+ +++ P + G +E ++SGGF +N I LG+ + FAN+L
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRL 123
Query: 205 LFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKV--LAMIGDGATDL 253
+ K G+ G D + K +++I K + +GDGA D+
Sbjct: 124 IVK-DGKLTG-DVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDI 172
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQV 145
+ D+DST E IDE+A+ G G+ VAE T RAM G + FE++L R+S K + Q+
Sbjct: 110 IVLDMDSTAIQIECIDEIAKLAGVGEEVAEVTERAMQGELDFEQSLRLRVSKLKDAPEQI 169
Query: 146 QDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLL 205
+ + P L P + E + SGGF + + + L + +N L
Sbjct: 170 LSQVRETLP-LMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQ--SNTLE 226
Query: 206 F---KSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDL 253
K +G+ LG + T A Q + H +GDGA DL
Sbjct: 227 IVSGKLTGQVLGEVVSAQTKADILLTLAQQYDVEIHNT---VAVGDGANDL 274
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 21/214 (9%)
Query: 55 SVQPLEASALGRSENTLPSKEVLQLW--------RTADAVCFDVDSTVCVDEGIDELAEF 106
SV P AL + N + S+E + + R + FDVDST+ E I+ LA
Sbjct: 149 SVPPGADEALRTALNRVSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAK 208
Query: 107 CGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXX 166
GA VA T AM G + F ++L R++ + V D + + L PG
Sbjct: 209 AGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQ-LELMPGARTTLRT 267
Query: 167 XXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKS---SGEFLGFDANEPTSR 223
++SGGFR +I P+A L + + + AN+L +G +G P
Sbjct: 268 LRRLGYACGVVSGGFRRIIEPLAEELML--DYVAANELEIVDGTLTGRVVG-----PIID 320
Query: 224 SGGKAAAVQQI--RKAHAYKVLAMIGDGATDLEV 255
GKA A+++ R +GDGA D+++
Sbjct: 321 RAGKATALREFAQRAGVPMAQTVAVGDGANDIDM 354
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQV 145
+ FD+DST +EG+DE+A G + T +AM G + F + R+ + K + V
Sbjct: 111 IAFDMDSTFIAEEGVDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAV 170
Query: 146 QDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGF 181
+ + R LSPG+ +ISGG
Sbjct: 171 LNAVCDR-MTLSPGLLTILPVIKAKGFKTAIISGGL 205
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 5/167 (2%)
Query: 88 FDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS-LSQVQ 146
FD DST+ E I+ LA G V T +A G F ++L R+S K L +
Sbjct: 9 FDFDSTLVNAETIESLARAWGVFDEVKTITLKAXNGETDFHKSLILRVSKLKNXPLKLAK 68
Query: 147 DFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLF 206
+ E P L G E SGGF N +L + F+N L+
Sbjct: 69 EVCESLP--LFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAA--FSNTLIV 124
Query: 207 KSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDL 253
++ + S S G+ V Q + ++GDGA DL
Sbjct: 125 ENDALNGLVTGHXXFSHSKGEXLLVLQRLLNISKTNTLVVGDGANDL 171
>pdb|2Q1F|A Chain A, Crystal Structure Of Chondroitin Sulfate Lyase Abc From
Bacteroides Thetaiotaomicron Wal2926
pdb|2Q1F|B Chain B, Crystal Structure Of Chondroitin Sulfate Lyase Abc From
Bacteroides Thetaiotaomicron Wal2926
Length = 1022
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 5 VRSQISPIGAHYKQ-QHSV---FIPKFSLKLRTNLCRAR---VGMMKHSKSFNSVAASVQ 57
V+SQ+ GAHYK +HS+ F P L+LR +L + G + +F + Q
Sbjct: 37 VQSQLGISGAHYKDGKHSLEWTFEPNGRLELRKDLKFEKKDPTGKDLYLSAFIVWIYNEQ 96
Query: 58 PLEAS------ALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDEL 103
P +A+ GR + P + WR A VC++ D +EG +EL
Sbjct: 97 PQDAAIEFEFLKDGRKCASFPFGINFKGWRAA-WVCYERDXQGTPEEGXNEL 147
>pdb|2JBR|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBS|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
Length = 422
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 34 NLCRARVGMMKHSKSFNSVAASVQPLEASALGRSENTL----PSKEVLQLWRTADAVCFD 89
N+ A +M+ ++S + VAA+ LE + + L P+KE L WRT A
Sbjct: 300 NVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQYPNKETLAFWRTNQAYAV- 358
Query: 90 VDSTVCVDEGIDELAEFCGA 109
+C+ E +D L GA
Sbjct: 359 ---KMCI-EAVDRLMAAAGA 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,786,512
Number of Sequences: 62578
Number of extensions: 247265
Number of successful extensions: 583
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 19
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)