BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025043
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NUR|A Chain A, Crystal Structure Of A Putative Amidohydrolase From
           Staphylococcus Aureus
          Length = 357

 Score = 31.6 bits (70), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 18/111 (16%)

Query: 69  VNLRLVPYGNA---QIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEG 125
           V ++++ YGN     + G     +CQ   ++       A  I  +P+  + F  +   E 
Sbjct: 87  VQIQVLSYGNGSPSNLVGQKAIELCQKANDQL------ANYIAQYPNRFVGFATLPINEP 140

Query: 126 QASASEQPEAAWRKCCNDLGFSQQPIDNCYQSG----EGTKLTLKYAEETD 172
           +A+A E     + +C NDLGF    I    Q G    +   +  K AE  D
Sbjct: 141 EAAARE-----FERCINDLGFKGALIXGRAQDGFLDQDKYDIIFKTAENLD 186


>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
 pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
           Fab Fragment
          Length = 220

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 143 DLG--FSQQPIDNCYQSGEGTKLTLKYAEE--TDSLKPP 177
           D+G  F QQ I N Y  G GTKL +K A+   T S+ PP
Sbjct: 88  DMGQYFCQQGISNPYTFGAGTKLEIKRADAKPTVSIFPP 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,697,573
Number of Sequences: 62578
Number of extensions: 260914
Number of successful extensions: 560
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 3
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)