BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025043
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo
sapiens GN=IFI30 PE=1 SV=3
Length = 250
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 19/204 (9%)
Query: 36 VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKT--IICQHG 93
V ++LYYE+LC C F+ +L + + I+N+ LVPYGNAQ + CQHG
Sbjct: 62 VNVTLYYEALCGGCRAFLIRELFPTWLLVME-ILNVTLVPYGNAQEQNVSGRWEFKCQHG 120
Query: 94 QNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDL--GFSQQPI 151
+ EC N + AC ++ D+ + F I C+E E E + C G S I
Sbjct: 121 EEECKFNKVEACVLDEL-DMELAFLTIVCME----EFEDMERSLPLCLQLYAPGLSPDTI 175
Query: 152 DNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFL 211
C G +L A+ TD+L+PPH +VPWVTVN + LE+ Q + VC+ Y+GK
Sbjct: 176 MECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQ-LLTLVCQLYQGK-K 233
Query: 212 PNACKSSQQESTPREASILPVCYK 235
P+ C SS +S+ VC+K
Sbjct: 234 PDVCPSST-------SSLRSVCFK 250
>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus
GN=IFI30 PE=2 SV=1
Length = 244
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 12/191 (6%)
Query: 36 VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKT--IICQHG 93
V +SLYYE+LCP C F+ +L + L I+N+ LVPYGNAQ R CQHG
Sbjct: 56 VNVSLYYEALCPGCREFLIRELFPTWLMVLE-ILNVTLVPYGNAQERNVSGKWEFTCQHG 114
Query: 94 QNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLG--FSQQPI 151
+ EC LN + AC ++ + +I F I C+E + E + C S I
Sbjct: 115 ERECLLNKVEACLLDQL-EQKIAFLTIVCLE----EMDDMEQNLKPCLQIYAPKVSADSI 169
Query: 152 DNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFL 211
C G +L A+ TD+L+PPH++VPWV VN + +++A ++ + VC+ Y+G+
Sbjct: 170 MECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMKDA-EHLLHLVCRLYQGQK- 227
Query: 212 PNACKSSQQES 222
P+ C+ + + S
Sbjct: 228 PDVCQLTAELS 238
>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus
norvegicus GN=Ifi30 PE=2 SV=1
Length = 248
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 14/202 (6%)
Query: 36 VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKT--IICQHG 93
V +SLYYESLC C F+ L + + I+N+ LVPYGNAQ R T CQHG
Sbjct: 59 VNVSLYYESLCGACRYFLVRNLFPTWLMVME-IMNITLVPYGNAQERNVSGTWEFTCQHG 117
Query: 94 QNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDN 153
+ EC LN + AC ++ + F I C+E ++ + ++ S + I
Sbjct: 118 ELECKLNKVEACLLDKL-EKEAAFLTIVCMEEMEDMEKKLGPCLQLYVPEV--SPESIME 174
Query: 154 CYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPN 213
C GT+L + A+ TD+L+PPH +VPWV VN + L + Q ++ VC+ Y+G P+
Sbjct: 175 CATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPLTDPSQ-LLSSVCELYQGTEKPD 233
Query: 214 ACKSSQQESTPREASILPVCYK 235
C S PRE VCYK
Sbjct: 234 ICSS--MADAPRE-----VCYK 248
>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus
musculus GN=Ifi30 PE=1 SV=3
Length = 248
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 106/202 (52%), Gaps = 14/202 (6%)
Query: 36 VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKT--IICQHG 93
V++SLYYESLC C F+ L + + I+N+ LVPYGNAQ R T CQHG
Sbjct: 59 VRVSLYYESLCGACRYFLVRDLFPTWLMVME-IMNITLVPYGNAQERNVSGTWEFTCQHG 117
Query: 94 QNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDN 153
+ EC LN + AC ++ + F I C+E ++ + ++ S + I
Sbjct: 118 ELECRLNMVEACLLDKL-EKEAAFLTIVCMEEMDDMEKKLGPCLQVYAPEV--SPESIME 174
Query: 154 CYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPN 213
C GT+L + A+ TD+L PPH +VPWV VN + L++ + ++ VC+ Y+G P+
Sbjct: 175 CATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLKDPSE-LLSIVCQLYQGTEKPD 233
Query: 214 ACKSSQQESTPREASILPVCYK 235
C S +PR+ VCYK
Sbjct: 234 ICSSIA--DSPRK-----VCYK 248
>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1
SV=1
Length = 277
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Query: 29 AAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTI 88
AA +QK+ +++ E+LCP C NF+ QL + + + VN+ LVP+GNA++ D TI
Sbjct: 69 AATHNQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVL-EDGTI 127
Query: 89 ICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDL---G 145
CQHG+ EC +N C I++ D + + CIE + A ++C L G
Sbjct: 128 KCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGG 186
Query: 146 FSQQPIDNCYQSGEGTKLTLKYAEETDSLKPP-HRFVPWVTVNNQALE--EAFQNFI-AY 201
Q+ +C S G L K A T ++ P H+FVPWV +N +L + FQN +
Sbjct: 187 DIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQNQLPTL 246
Query: 202 VCKAYKG 208
+C+ Y G
Sbjct: 247 LCEWYSG 253
>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa
GN=IFI30 PE=2 SV=1
Length = 246
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 36 VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKT--IICQHG 93
V ++LYYESLC C F+ +L + + I+N+ LVPYGNAQ R CQHG
Sbjct: 58 VNVNLYYESLCNGCRYFLVRELFPTWLM-VWEILNVTLVPYGNAQERNVSGRWEFTCQHG 116
Query: 94 QNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDN 153
+ EC +N + AC ++ + + F I CIE + E + + S I
Sbjct: 117 EQECKMNKVEACLLDKL-EKNMAFLTIVCIEELDDMEKNLEPCLQIYAPKV--SPDSIME 173
Query: 154 CYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPN 213
C G +L A+ TD+LKPPH +VPWV VN + + E Q + VC+ Y+G+ P+
Sbjct: 174 CAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMTEKDQ-LLRLVCQLYEGEK-PD 231
Query: 214 ACK 216
C+
Sbjct: 232 VCQ 234
>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3
SV=1
Length = 323
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 13/187 (6%)
Query: 36 VKLSLYYESLCPYCANFIENQLVKVFNTDLSTI--VNLRLVPYGNAQI--RGPDKTIICQ 91
VKL +Y E+ CP + F QL K ++ L + + L ++P+G A+ +G D CQ
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDI-LGRLNRIELNVIPFGKARCTEKGNDFECQCQ 197
Query: 92 HGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQ-QP 150
HG EC +N + C I+ + + + C++G+ S E KC + S+ +
Sbjct: 198 HGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQGKYSLDEA-----MKCVTENYPSEYER 252
Query: 151 IDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKF 210
+ C G +L ++T SL P F+PW+ +N +A + VC+A +
Sbjct: 253 MRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQP-- 310
Query: 211 LPNACKS 217
+P+ACK
Sbjct: 311 MPSACKD 317
>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1
SV=1
Length = 218
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 10/200 (5%)
Query: 13 ILLLIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLST-IVNL 71
I L++FI+ +S+++D A V + + E C + +++ + ++ ST +N
Sbjct: 9 ICLILFIT-KISYAKDKGANGDMVNIVAFGEGRCSDTSYWMKWHWLPMWRMLGSTGRINF 67
Query: 72 RLVPYGNAQI-----RGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQ 126
PYG D C HG EC LN + AC I A P+ + +++ CI+G+
Sbjct: 68 DYHPYGIKTTCVDSESADDVVCDCHHGNRECLLNQLQACVIEALPNFEDYMEVVTCIQGK 127
Query: 127 ASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTV 186
+ S E + + + C +S G KL + P + PW+ +
Sbjct: 128 QNISMAAEVCFE---GPTKLDRTKMMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILI 184
Query: 187 NNQALEEAFQNFIAYVCKAY 206
N +EA ++ ++C +
Sbjct: 185 NGTRYKEAEEDLWQFLCDRF 204
>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282
PE=3 SV=1
Length = 220
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 16 LIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLST-IVNLRLV 74
+FI S + +KV + + E C + +++ + ++ ST +N
Sbjct: 13 FLFILVLCSSKDTEVNNGEKVNIVAFGEGRCSDTSFWMKWHWLPMWRMLGSTGRINFEYH 72
Query: 75 PYGNAQI-----RGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASA 129
PYG G D C HG EC LN + AC I A P+ + +++ CI+G+ +
Sbjct: 73 PYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVTCIQGKQNI 132
Query: 130 SEQPEAAWRKCCND-LGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNN 188
S EA C N+ + + +C S G KL + + P + PW+ +N
Sbjct: 133 SMAAEA----CFNEPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWAPWILING 188
Query: 189 QALEEAFQNFIAYVCKAY 206
+ +EA ++ ++C +
Sbjct: 189 KRYKEAEEDLWQFLCDRF 206
>sp|P72331|NODE_RHIS3 Nodulation protein E OS=Rhizobium sp. (strain N33) GN=nodE PE=3
SV=1
Length = 402
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 129 ASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLK 175
A E PEAA R C D G + Q +D G GTK + ET+++K
Sbjct: 266 AVEGPEAAMRACLADAGLNVQDVDYINAHGTGTKANDRM--ETEAIK 310
>sp|Q9UUC7|CTU2_SCHPO Cytoplasmic tRNA 2-thiolation protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncs2 PE=1 SV=1
Length = 366
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 41 YYESLC---PYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNEC 97
+Y S+C P C F+ L +V ++DL + +N++ + + ++ I TI HG E
Sbjct: 219 WYTSVCSKLPNCDTFLLRPLREVLSSDLKSYMNIKGLAFCDSLIEARPNTI---HGVTES 275
Query: 98 YLNTIH 103
Y ++++
Sbjct: 276 YFSSLN 281
>sp|P89676|RDRP_TOMK2 Replicase large subunit OS=Tomato mosaic virus (strain Kazakh K2)
PE=3 SV=1
Length = 1616
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 47/132 (35%)
Query: 90 CQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRK----CCNDLG 145
C+H Q ECY ++A A+++ D+ A E A RK C
Sbjct: 186 CRHSQ-ECYTGRVYAIALHSIYDI--------------PADEFGAALLRKNVHVCYAAFH 230
Query: 146 FSQ-----------QPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEA 194
FS+ I+ C+Q +G +LT +A E+ T+N+ +
Sbjct: 231 FSENLLLEDSHVNLDEINACFQR-DGDRLTFSFASES-------------TLNHS---HS 273
Query: 195 FQNFIAYVCKAY 206
+ N + YVCK Y
Sbjct: 274 YSNILKYVCKTY 285
>sp|Q9SUT2|PER39_ARATH Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1
Length = 326
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 9 FVLSILLLIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTI 68
F L++L+++ I ++FSE ++K+ +Y+ CPY +++ + + N S
Sbjct: 4 FGLALLMILVIQGLVTFSE------AQLKMG-FYDQTCPYAEKIVQDVVNQHINNAPSLA 56
Query: 69 VNLRLVPYGNAQIRGPDKTII 89
L + + + +RG D +I+
Sbjct: 57 AGLIRMHFHDCFVRGCDGSIL 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,255,241
Number of Sequences: 539616
Number of extensions: 3540028
Number of successful extensions: 7196
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7162
Number of HSP's gapped (non-prelim): 17
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)