Query 025043
Match_columns 258
No_of_seqs 132 out of 394
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3160 Gamma-interferon induc 100.0 2.6E-54 5.6E-59 381.6 15.8 180 32-216 37-217 (220)
2 PF03227 GILT: Gamma interfero 100.0 1.4E-37 3.1E-42 247.5 9.7 106 36-146 1-107 (108)
3 cd03023 DsbA_Com1_like DsbA fa 98.4 5.4E-06 1.2E-10 66.9 12.7 138 32-191 3-140 (154)
4 cd03019 DsbA_DsbA DsbA family, 98.3 6.7E-06 1.4E-10 68.6 10.7 137 33-191 14-154 (178)
5 PF13462 Thioredoxin_4: Thiore 98.0 2.3E-05 4.9E-10 64.3 7.6 147 32-202 10-160 (162)
6 cd03024 DsbA_FrnE DsbA family, 97.4 0.0019 4.2E-08 55.0 10.9 149 38-191 1-186 (201)
7 PRK10954 periplasmic protein d 97.3 0.0027 5.8E-08 55.5 11.1 140 33-191 36-178 (207)
8 cd03025 DsbA_FrnE_like DsbA fa 97.0 0.0046 9.9E-08 52.3 8.5 149 36-189 1-178 (193)
9 PF13743 Thioredoxin_5: Thiore 96.8 0.0078 1.7E-07 51.6 8.5 144 40-188 2-155 (176)
10 PF01323 DSBA: DSBA-like thior 96.3 0.014 2.9E-07 49.2 6.7 146 37-190 1-177 (193)
11 COG2761 FrnE Predicted dithiol 95.5 0.096 2.1E-06 47.1 9.2 155 32-191 2-195 (225)
12 cd03022 DsbA_HCCA_Iso DsbA fam 94.9 0.05 1.1E-06 45.7 5.3 56 134-191 123-178 (192)
13 COG1651 DsbG Protein-disulfide 91.0 1.8 4E-05 38.1 9.2 138 33-191 83-226 (244)
14 PRK11657 dsbG disulfide isomer 85.1 1.9 4.1E-05 39.1 5.4 43 32-78 115-157 (251)
15 cd02972 DsbA_family DsbA famil 83.5 1.8 3.9E-05 31.1 3.9 41 38-80 1-41 (98)
16 PF14595 Thioredoxin_9: Thiore 76.1 5 0.00011 32.7 4.6 44 31-77 38-81 (129)
17 cd03020 DsbA_DsbC_DsbG DsbA fa 73.9 6.1 0.00013 33.8 4.8 42 32-79 75-116 (197)
18 cd02973 TRX_GRX_like Thioredox 72.9 7.5 0.00016 26.9 4.3 17 36-52 1-17 (67)
19 TIGR02189 GlrX-like_plant Glut 70.0 16 0.00035 28.1 6.0 48 139-192 26-73 (99)
20 TIGR00411 redox_disulf_1 small 67.9 11 0.00025 26.7 4.4 25 36-61 1-25 (82)
21 cd03021 DsbA_GSTK DsbA family, 67.7 8.6 0.00019 33.3 4.4 50 137-188 135-187 (209)
22 PF07172 GRP: Glycine rich pro 65.3 2.4 5.2E-05 33.2 0.4 8 1-8 1-8 (95)
23 KOG1752 Glutaredoxin and relat 65.2 12 0.00026 29.7 4.3 32 156-192 48-79 (104)
24 cd03027 GRX_DEP Glutaredoxin ( 60.0 21 0.00047 25.2 4.6 47 137-192 17-63 (73)
25 TIGR02190 GlrX-dom Glutaredoxi 57.6 7.6 0.00016 28.3 1.9 20 33-52 5-24 (79)
26 TIGR02738 TrbB type-F conjugat 56.2 17 0.00036 30.5 3.9 20 34-53 50-69 (153)
27 KOG2501 Thioredoxin, nucleored 55.7 4.7 0.0001 34.5 0.5 61 33-95 32-94 (157)
28 PF13728 TraF: F plasmid trans 55.6 8.6 0.00019 34.1 2.2 39 32-76 118-156 (215)
29 cd02066 GRX_family Glutaredoxi 55.0 9.7 0.00021 25.7 2.0 16 37-52 1-16 (72)
30 PHA03050 glutaredoxin; Provisi 54.8 35 0.00075 26.9 5.4 49 138-192 30-81 (108)
31 cd03026 AhpF_NTD_C TRX-GRX-lik 53.7 27 0.00059 26.4 4.4 21 32-52 10-30 (89)
32 PRK11200 grxA glutaredoxin 1; 51.3 17 0.00038 26.6 3.0 23 178-201 56-78 (85)
33 TIGR02200 GlrX_actino Glutared 50.5 11 0.00023 26.4 1.6 16 37-52 1-16 (77)
34 cd03419 GRX_GRXh_1_2_like Glut 49.9 13 0.00029 26.4 2.1 16 37-52 1-16 (82)
35 PRK10877 protein disulfide iso 49.7 31 0.00067 30.8 4.8 42 33-79 106-147 (232)
36 cd03022 DsbA_HCCA_Iso DsbA fam 49.5 23 0.00051 29.3 3.8 35 38-76 1-35 (192)
37 PF13098 Thioredoxin_2: Thiore 49.2 34 0.00075 25.7 4.5 27 32-59 3-29 (112)
38 PRK13703 conjugal pilus assemb 46.8 12 0.00026 34.2 1.7 38 34-77 143-180 (248)
39 TIGR02180 GRX_euk Glutaredoxin 46.5 14 0.0003 26.4 1.7 16 38-53 1-16 (84)
40 PF00462 Glutaredoxin: Glutare 43.5 19 0.00042 24.4 2.0 15 38-52 1-15 (60)
41 TIGR02739 TraF type-F conjugat 40.6 17 0.00037 33.3 1.8 38 33-76 149-186 (256)
42 cd03027 GRX_DEP Glutaredoxin ( 40.2 28 0.0006 24.7 2.5 17 37-53 2-18 (73)
43 cd03418 GRX_GRXb_1_3_like Glut 38.1 25 0.00054 24.6 2.0 15 38-52 2-16 (75)
44 PF13905 Thioredoxin_8: Thiore 38.0 86 0.0019 22.8 5.0 41 34-76 1-43 (95)
45 PRK11200 grxA glutaredoxin 1; 37.3 25 0.00054 25.7 1.9 17 37-53 2-18 (85)
46 TIGR02196 GlrX_YruB Glutaredox 36.4 20 0.00043 24.3 1.2 15 38-52 2-16 (74)
47 cd03021 DsbA_GSTK DsbA family, 36.0 67 0.0015 27.6 4.7 35 37-76 2-37 (209)
48 cd02976 NrdH NrdH-redoxin (Nrd 35.7 27 0.00058 23.7 1.8 16 37-52 1-16 (73)
49 PHA03050 glutaredoxin; Provisi 35.3 23 0.0005 27.9 1.6 16 37-52 14-29 (108)
50 TIGR02189 GlrX-like_plant Glut 33.5 26 0.00056 27.0 1.5 17 37-53 9-25 (99)
51 cd02949 TRX_NTR TRX domain, no 33.4 1.2E+02 0.0025 22.5 5.1 34 32-67 11-44 (97)
52 TIGR00365 monothiol glutaredox 33.3 1.1E+02 0.0024 23.3 5.1 46 138-192 34-79 (97)
53 COG4856 Uncharacterized protei 33.0 30 0.00066 33.7 2.2 37 9-45 16-61 (403)
54 TIGR02181 GRX_bact Glutaredoxi 32.8 25 0.00055 25.1 1.3 15 178-192 47-61 (79)
55 TIGR01295 PedC_BrcD bacterioci 31.7 32 0.00069 27.5 1.8 20 33-52 22-41 (122)
56 COG0695 GrxC Glutaredoxin and 31.6 29 0.00064 25.7 1.5 16 177-192 50-65 (80)
57 PF11287 DUF3088: Protein of u 31.0 24 0.00051 28.6 0.9 34 45-81 23-56 (112)
58 cd03028 GRX_PICOT_like Glutare 30.7 1.7E+02 0.0036 21.8 5.6 47 137-192 29-75 (90)
59 TIGR02183 GRXA Glutaredoxin, G 30.3 33 0.00071 25.5 1.6 22 179-201 56-77 (86)
60 cd02995 PDI_a_PDI_a'_C PDIa fa 30.3 84 0.0018 22.9 3.9 28 33-61 17-44 (104)
61 PRK10638 glutaredoxin 3; Provi 30.0 45 0.00097 24.3 2.3 16 37-52 3-18 (83)
62 PRK13728 conjugal transfer pro 29.7 39 0.00085 29.4 2.2 34 38-77 73-106 (181)
63 cd03029 GRX_hybridPRX5 Glutare 29.6 40 0.00087 23.7 1.9 15 178-192 48-62 (72)
64 PRK10824 glutaredoxin-4; Provi 28.6 1.7E+02 0.0036 23.5 5.5 46 138-192 37-82 (115)
65 PF10731 Anophelin: Thrombin i 26.9 43 0.00094 24.3 1.6 23 1-26 1-23 (65)
66 TIGR01126 pdi_dom protein disu 25.6 54 0.0012 23.8 2.1 21 33-53 12-32 (102)
67 KOG3425 Uncharacterized conser 25.5 97 0.0021 25.6 3.6 35 43-79 42-76 (128)
68 PF00085 Thioredoxin: Thioredo 24.1 1.1E+02 0.0024 22.0 3.5 33 33-67 16-48 (103)
69 cd02965 HyaE HyaE family; HyaE 23.9 1.5E+02 0.0033 23.7 4.4 21 32-52 25-47 (111)
70 cd02962 TMX2 TMX2 family; comp 23.3 1.5E+02 0.0032 24.8 4.5 20 33-52 46-65 (152)
71 COG2143 Thioredoxin-related pr 23.0 73 0.0016 27.7 2.5 29 30-59 38-66 (182)
72 PRK10329 glutaredoxin-like pro 22.8 63 0.0014 23.9 1.9 16 37-52 2-17 (81)
73 cd01659 TRX_superfamily Thiore 22.6 50 0.0011 20.2 1.2 16 38-53 1-16 (69)
74 cd03040 GST_N_mPGES2 GST_N fam 22.2 58 0.0013 22.9 1.6 15 38-52 2-16 (77)
75 cd02961 PDI_a_family Protein D 21.6 2.4E+02 0.0051 19.7 4.8 26 35-61 16-41 (101)
76 PRK12759 bifunctional gluaredo 21.6 1.4E+02 0.0031 28.9 4.6 55 137-192 18-72 (410)
77 TIGR02194 GlrX_NrdH Glutaredox 21.1 54 0.0012 23.2 1.2 14 39-52 2-15 (72)
78 COG4545 Glutaredoxin-related p 20.6 61 0.0013 24.7 1.4 16 39-54 5-20 (85)
79 PTZ00051 thioredoxin; Provisio 20.5 87 0.0019 22.8 2.3 28 33-61 17-44 (98)
80 PF13192 Thioredoxin_3: Thiore 20.5 2.7E+02 0.0059 19.8 4.9 16 36-52 1-16 (76)
81 cd02953 DsbDgamma DsbD gamma f 20.3 1.3E+02 0.0027 22.4 3.2 22 33-54 10-31 (104)
82 cd03012 TlpA_like_DipZ_like Tl 20.0 2.1E+02 0.0045 22.2 4.5 39 33-74 22-60 (126)
No 1
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-54 Score=381.64 Aligned_cols=180 Identities=45% Similarity=0.885 Sum_probs=164.2
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhhCC
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWP 111 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~~~ 111 (258)
..++|+|+||||||||||++||++||+|+|++.+.+++||++||||||+..+++++|+||||+.||.+|++|||+|++++
T Consensus 37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~ 116 (220)
T KOG3160|consen 37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLP 116 (220)
T ss_pred cCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHhhh
Confidence 45699999999999999999999999999985578999999999999999844489999999999999999999999999
Q ss_pred cchhhhhhhhhhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeec
Q 025043 112 DVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQAL 191 (258)
Q Consensus 112 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 191 (258)
++..+++||.||++ ....+.|.+|+++.+.+++.|++|++|++|.+|++++|.+|..+.|+|.|||||+|||+++
T Consensus 117 ~~~~~l~~i~C~~~-----~~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~ 191 (220)
T KOG3160|consen 117 DQSDQLPFIRCIQG-----KQKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQPL 191 (220)
T ss_pred chHhhhceehhhhc-----ccchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcch
Confidence 99999999999995 1234567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhhcCCC-CCCCCc
Q 025043 192 EEAFQNFIAYVCKAYKGKF-LPNACK 216 (258)
Q Consensus 192 ~~a~~nL~~~VC~~y~g~~-~P~~C~ 216 (258)
.++..||.+.+|.+|++.. +|..|.
T Consensus 192 ~~~~~~l~~~~C~~~~~~~~~~~~~~ 217 (220)
T KOG3160|consen 192 QDAEQDLVTLLCEAYKGKKQKPLKCQ 217 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccc
Confidence 9999999999999999852 344443
No 2
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=1.4e-37 Score=247.46 Aligned_cols=106 Identities=42% Similarity=0.874 Sum_probs=91.9
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHH-hcCCCeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhhCCcch
Q 025043 36 VKLSLYYESLCPYCANFIENQLVKVFN-TDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVR 114 (258)
Q Consensus 36 V~V~vYyESlCPd~~~Fi~~qL~P~~~-~~l~~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~~~~~~ 114 (258)
|+|+||||||||||++||++||.|+|. .++.++|||+|||||||+....+.+|+||||+.||+||++|+|+++++++..
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~ 80 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN 80 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence 789999999999999999999999772 3799999999999999998854446999999999999999999999999988
Q ss_pred hhhhhhhhhccccCCCCCchHHHHHHHHHcCC
Q 025043 115 IHFKLIQCIEGQASASEQPEAAWRKCCNDLGF 146 (258)
Q Consensus 115 ~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~gl 146 (258)
.+|+||.||+++.. ....+. |++++++
T Consensus 81 ~~~~~i~Cm~~~~~----~~~~~~-Ca~~~~~ 107 (108)
T PF03227_consen 81 AALPFIACMESSQD----FPKAIK-CAKKYGI 107 (108)
T ss_pred hhcCEEEEEcCCCC----Cchhhh-hHHhcCC
Confidence 89999999996522 122233 9998875
No 3
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.44 E-value=5.4e-06 Score=66.86 Aligned_cols=138 Identities=9% Similarity=0.155 Sum_probs=88.5
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhhCC
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWP 111 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~~~ 111 (258)
...++.|.+|+.-.||.|++|- ..|...+. ...+ +++.+++|--.. ... -..-..-.|+.. .
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~-~~~~-~~~~~~~~p~~~---~~~----------~~~~~~~~~~~~--~ 64 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLK-EDPD-VRVVFKEFPILG---ESS----------VLAARVALAVWK--N 64 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhh-HHHHHHHH-HCCC-ceEEEEeCCccC---cch----------HHHHHHHHHHHH--h
Confidence 3578999999999999999995 45666553 3344 566666552111 000 011111123322 1
Q ss_pred cchhhhhhhhhhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeec
Q 025043 112 DVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQAL 191 (258)
Q Consensus 112 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 191 (258)
+....+.|..=+..... ..........+...|++.+.+.+|.++....+.+.+..+....+. +..+||++|||+..
T Consensus 65 ~~~~~~~~~~~lf~~~~--~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--i~gtPt~~v~g~~~ 140 (154)
T cd03023 65 GPGKYLEFHNALMATRG--RLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALG--ITGTPAFIIGDTVI 140 (154)
T ss_pred ChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcC--CCcCCeEEECCEEe
Confidence 33445555443332111 122334567889999999999999999888888888887777764 88999999999875
No 4
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.31 E-value=6.7e-06 Score=68.59 Aligned_cols=137 Identities=23% Similarity=0.196 Sum_probs=89.8
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhhCCc
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPD 112 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~~~~ 112 (258)
..+|.|..|+.-.||.|++|- ..+.++.. +..+.+.++++|+...... +. ...+..+.+.. ..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~----------~~---~aa~a~~aa~~-~~- 76 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVK-KLPKDVKFEKVPVVFGGGE----------GE---PLARAFYAAEA-LG- 76 (178)
T ss_pred CCCcEEEEEECCCCcchhhhh-HHHHHHHH-hCCCCceEEEcCCcccccc----------ch---HHHHHHHHHHH-cC-
Confidence 678999999999999999995 56777775 4567888998887643211 00 11122222211 11
Q ss_pred chhhhhhhh----hhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECC
Q 025043 113 VRIHFKLIQ----CIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNN 188 (258)
Q Consensus 113 ~~~~l~fI~----Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 188 (258)
....|.. -........ ...+.+...+...|+|.+.+.+|.++.+-+..+.+..+....+. +..+||++|||
T Consensus 77 --~~~~~~~~lf~~~~~~~~~~-~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~g--i~gTPt~iInG 151 (178)
T cd03019 77 --LEDKLHAALFEAIHEKRKRL-LDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYK--ITGVPAFVVNG 151 (178)
T ss_pred --cHhhhhHHHHHHHHHhCCCC-CCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcC--CCCCCeEEECC
Confidence 1112211 111111111 22456788999999999999999998877777777777766654 88999999999
Q ss_pred eec
Q 025043 189 QAL 191 (258)
Q Consensus 189 ~~~ 191 (258)
++.
T Consensus 152 ~~~ 154 (178)
T cd03019 152 KYV 154 (178)
T ss_pred EEE
Confidence 975
No 5
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.01 E-value=2.3e-05 Score=64.27 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=91.5
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcC--CCeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhh
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDL--STIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINA 109 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l--~~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~ 109 (258)
...++.|.+|..-.||.|++|.. .|.++++ ++ .+.|.+.++|+-.. +.....+-.+..|+.+.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~-~~~~~~~-~~i~~~~v~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~ 74 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHE-ELEKLLK-KYIDPGKVKFVFRPVPLD-------------KHSSLRAAMAAECVADQ 74 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHH-HHHHHHH-HHTTTTTEEEEEEESSSS-------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECCCCHhHHHHHH-HHhhhhh-hccCCCceEEEEEEcccc-------------chhHHHHHHHHHHHHHH
Confidence 46689999999999999999965 4447775 44 56788888877111 11155666667777665
Q ss_pred CCcchhhhhhhhhhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCe
Q 025043 110 WPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQ 189 (258)
Q Consensus 110 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~ 189 (258)
+ +.++.+..-+.......... ... +...+.+.+.+.+|.++..-...+.+.-+..... .++.+|+++|||+
T Consensus 75 --~-~~~~~~~~~~~~~~~~~~~~-~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~~inG~ 145 (162)
T PF13462_consen 75 --G-KYFWFFHELLFSQQENFENK-KDI---AANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTFFINGK 145 (162)
T ss_dssp --T-HHHHHHHHHHHHHCHSTSSH-HHH---HHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEEEETTC
T ss_pred --h-HHHHHHHHHHHHhhhccchh-HHH---HHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEEEECCE
Confidence 2 44455555554222112111 111 1334445678999998877667666666666555 4889999999999
Q ss_pred ecH--HHHhHHHHHH
Q 025043 190 ALE--EAFQNFIAYV 202 (258)
Q Consensus 190 ~~~--~a~~nL~~~V 202 (258)
+.. ...++|...|
T Consensus 146 ~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 146 YVVGPYTIEELKELI 160 (162)
T ss_dssp EEETTTSHHHHHHHH
T ss_pred EeCCCCCHHHHHHHH
Confidence 874 2344555443
No 6
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.41 E-value=0.0019 Score=54.99 Aligned_cols=149 Identities=14% Similarity=0.172 Sum_probs=92.7
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhcCC--CeeEEEEEEEeeeeEeCCCC----c-eeecCCh----------------
Q 025043 38 LSLYYESLCPYCANFIENQLVKVFNTDLS--TIVNLRLVPYGNAQIRGPDK----T-IICQHGQ---------------- 94 (258)
Q Consensus 38 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--~ivdl~lVPyGnA~~~~~~~----~-f~CQHG~---------------- 94 (258)
|++|+.-.||+|--.. .+|..+.. ... +-++|++.||+=.......+ . +.=+||.
T Consensus 1 I~~~~D~~cP~cyl~~-~~l~~~~~-~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~ 78 (201)
T cd03024 1 IDIWSDVVCPWCYIGK-RRLEKALA-ELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA 78 (201)
T ss_pred CeEEecCcCccHHHHH-HHHHHHHH-hCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5799999999997663 46666654 342 25899999996432211010 0 0001111
Q ss_pred ---------hhhccchHhHhHhhhC-Ccchhhhhhhhhhccc----cCCCCCchHHHHHHHHHcCCCchhhhhhccCCch
Q 025043 95 ---------NECYLNTIHACAINAW-PDVRIHFKLIQCIEGQ----ASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEG 160 (258)
Q Consensus 95 ---------~EC~gN~iqaCai~~~-~~~~~~l~fI~Cm~~~----~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G 160 (258)
..-..|...+|..-.. .......+|..=+... ..++ +........++..|+|.+.+.++.++.+.
T Consensus 79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i-~~~~~l~~~a~~~Gld~~~~~~~~~~~~~ 157 (201)
T cd03024 79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDI-GDRDVLVDLAEEAGLDAAEARAVLASDEY 157 (201)
T ss_pred HcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCC-CCHHHHHHHHHHcCCCHHHHHHHhcCccc
Confidence 0111355555543322 1223456665555421 1111 23345678899999999999999999988
Q ss_pred HHHHHHHHHHhccCCCCCceeeEEEECCeec
Q 025043 161 TKLTLKYAEETDSLKPPHRFVPWVTVNNQAL 191 (258)
Q Consensus 161 ~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 191 (258)
++.+.+..++...+ .+..+||++|||++.
T Consensus 158 ~~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~ 186 (201)
T cd03024 158 ADEVRADEARARQL--GISGVPFFVFNGKYA 186 (201)
T ss_pred chHHHHHHHHHHHC--CCCcCCEEEECCeEe
Confidence 88888887777665 489999999999864
No 7
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.34 E-value=0.0027 Score=55.51 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=80.9
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhh--HHHHHhcCCCeeEEEEEEEeeeeEeCCCCceeec-CChhhhccchHhHhHhhh
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQL--VKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQ-HGQNECYLNTIHACAINA 109 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL--~P~~~~~l~~ivdl~lVPyGnA~~~~~~~~f~CQ-HG~~EC~gN~iqaCai~~ 109 (258)
..+..|.-|+-=.||.|.+|-. .| .+.|...+.+-+.+..+|+--.... +.. .-. .--.+|.+. .+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~-~~~--~~~a~~~a~~~~~------~~k 105 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPL-GKE--LTQAWAVAMALGV------EDK 105 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchh-hHH--HHHHHHHHHHhCc------HHH
Confidence 3467899999999999999954 22 3566545555555555443111000 000 000 000112111 000
Q ss_pred CCcchhhhhhhhhhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCe
Q 025043 110 WPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQ 189 (258)
Q Consensus 110 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~ 189 (258)
. ....+..+ +.+. .. ........-+...|+|.+.+.+|.++..-.+.+.+..+....+ .++-+|+++|||+
T Consensus 106 ~--~~~lf~~i--~~~~--~~-~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInGk 176 (207)
T PRK10954 106 V--TPPLFEGV--QKTQ--TI-QSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNGK 176 (207)
T ss_pred H--HHHHHHHH--HccC--CC-CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECCE
Confidence 0 01122222 2211 11 2334566778899999999999999987777777777666665 4899999999999
Q ss_pred ec
Q 025043 190 AL 191 (258)
Q Consensus 190 ~~ 191 (258)
+.
T Consensus 177 y~ 178 (207)
T PRK10954 177 YM 178 (207)
T ss_pred EE
Confidence 85
No 8
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=96.96 E-value=0.0046 Score=52.26 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=89.1
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeEeCC-------------------CCceeecCChhh
Q 025043 36 VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGP-------------------DKTIICQHGQNE 96 (258)
Q Consensus 36 V~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~~~~-------------------~~~f~CQHG~~E 96 (258)
++|.+|+.-+||+|-... .+|..+.+ .+..-++|++.+++=...... ..+..-+.++.+
T Consensus 1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~-~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (193)
T cd03025 1 LELYYFIDPLCGWCYGFE-PLLEKLKE-EYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE 78 (193)
T ss_pred CeEEEEECCCCchhhCch-HHHHHHHH-HhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence 468999999999996653 34555543 343347788777764332210 000111111110
Q ss_pred ---hccchHhHhHhhhC---Ccchhhhhhhhhhccc----cCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHH
Q 025043 97 ---CYLNTIHACAINAW---PDVRIHFKLIQCIEGQ----ASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLK 166 (258)
Q Consensus 97 ---C~gN~iqaCai~~~---~~~~~~l~fI~Cm~~~----~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~ 166 (258)
--.|...++..-.. ........|..-+... ..++ +........+.+.|+|.+.+.++.++...++.+.+
T Consensus 79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i-~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~ 157 (193)
T cd03025 79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDL-ADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQE 157 (193)
T ss_pred cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHH
Confidence 00123333322211 1223556676665421 1112 23345678899999999999999999999999988
Q ss_pred HHHHhccCCCCCceeeEEEECCe
Q 025043 167 YAEETDSLKPPHRFVPWVTVNNQ 189 (258)
Q Consensus 167 ~~~~T~~l~P~~~~VPwI~iNG~ 189 (258)
.-+....+. +..+||++|++.
T Consensus 158 ~~~~a~~~g--v~g~Ptfvv~~~ 178 (193)
T cd03025 158 DQKLARELG--INGFPTLVLEDD 178 (193)
T ss_pred HHHHHHHcC--CCccCEEEEEeC
Confidence 888777764 789999999654
No 9
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.78 E-value=0.0078 Score=51.60 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=82.5
Q ss_pred EEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeEeCCC-CceeecCChh--hhccchHhHhH---hhhCCcc
Q 025043 40 LYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPD-KTIICQHGQN--ECYLNTIHACA---INAWPDV 113 (258)
Q Consensus 40 vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~~~~~-~~f~CQHG~~--EC~gN~iqaCa---i~~~~~~ 113 (258)
+|+.-+|+.|-.+ ...|..+.. .+...+++++||.|++...... ....+.+..- +=......+|. ...+...
T Consensus 2 ~F~dPlc~~C~~~-E~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~ 79 (176)
T PF13743_consen 2 LFVDPLCSWCWGF-EPELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK 79 (176)
T ss_dssp EEE-TT-HHHHHH-HHHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred eeeCCCChHHHHh-HHHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence 4677899999777 334444443 6788999999999999754211 1112222221 12244555662 1113355
Q ss_pred hhhhhhhhhhcccc----CCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECC
Q 025043 114 RIHFKLIQCIEGQA----SASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNN 188 (258)
Q Consensus 114 ~~~l~fI~Cm~~~~----~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 188 (258)
++...|+.-|+... .++ ...+....||++.|+|.+...+=.+|+..++.+.+--+.+..+. ++-.|+++|.+
T Consensus 80 k~~~~fL~~lQ~a~~~~~~~~-s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~ 155 (176)
T PF13743_consen 80 KKARRFLRALQEALFLEGKNY-SDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN 155 (176)
T ss_dssp H--HHHHHHHHHHHHTS---T-TSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred hhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence 67788888876432 111 23356789999999999988887789889999888888888775 89999999855
No 10
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.26 E-value=0.014 Score=49.18 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=83.5
Q ss_pred EEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeE-e-CCCC---c--------------------eeec
Q 025043 37 KLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQI-R-GPDK---T--------------------IICQ 91 (258)
Q Consensus 37 ~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~-~-~~~~---~--------------------f~CQ 91 (258)
+|++|+.-.||.|-.+.. .|..+.. ...+ ++|++.||.-... . .++. . +.-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~-~~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~ 77 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASP-RLRKLRA-EYPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN 77 (193)
T ss_dssp EEEEEEBTTBHHHHHHHH-HHHHHHH-HHTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred CEEEEEeCCCHHHHHHHH-HHHHHHH-HhcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence 589999999999988754 4555543 2334 8999999853221 0 0110 0 0000
Q ss_pred CChhhhccchHhHhHhhhC-Ccchhhhhh-----hhhhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHH
Q 025043 92 HGQNECYLNTIHACAINAW-PDVRIHFKL-----IQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTL 165 (258)
Q Consensus 92 HG~~EC~gN~iqaCai~~~-~~~~~~l~f-----I~Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~ 165 (258)
..+.. .+|...+..+-.. ........+ -.-... ..++ +..+.....+.+.|+|.+.+.+-.+++.++..+.
T Consensus 78 ~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~-~~~i-~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~ 154 (193)
T PF01323_consen 78 FPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVE-GRDI-SDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALE 154 (193)
T ss_dssp TSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-ST-T-SSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHH
T ss_pred CCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc-ccCC-CCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHH
Confidence 00000 0133333332222 111111122 122221 1222 2344567889999999999999998988989888
Q ss_pred HHHHHhccCCCCCceeeEEEECCee
Q 025043 166 KYAEETDSLKPPHRFVPWVTVNNQA 190 (258)
Q Consensus 166 ~~~~~T~~l~P~~~~VPwI~iNG~~ 190 (258)
+..++...+. +..|||++|||++
T Consensus 155 ~~~~~a~~~g--v~GvP~~vv~g~~ 177 (193)
T PF01323_consen 155 EDTAEARQLG--VFGVPTFVVNGKY 177 (193)
T ss_dssp HHHHHHHHTT--CSSSSEEEETTTE
T ss_pred HHHHHHHHcC--CcccCEEEECCEE
Confidence 8888777764 8999999999993
No 11
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.54 E-value=0.096 Score=47.12 Aligned_cols=155 Identities=14% Similarity=0.215 Sum_probs=96.4
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEE--EEEEEeeeeEeCCC-----------Ccee----ecC--
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNL--RLVPYGNAQIRGPD-----------KTII----CQH-- 92 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl--~lVPyGnA~~~~~~-----------~~f~----CQH-- 92 (258)
+..+++|+||..=.||.|--. ...|..+.. .+.+.+++ ..-||=-.-.-... ++.. =-|
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~-~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~ 79 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALA-EYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHAR 79 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHH-hcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHH
Confidence 467899999999999999433 334445553 45544444 44455321100000 0000 000
Q ss_pred ----Chh---------h-hccchHhHhHhhhCCc-ch-hhhhhhhhhcccc----CCCCCchHHHHHHHHHcCCCchhhh
Q 025043 93 ----GQN---------E-CYLNTIHACAINAWPD-VR-IHFKLIQCIEGQA----SASEQPEAAWRKCCNDLGFSQQPID 152 (258)
Q Consensus 93 ----G~~---------E-C~gN~iqaCai~~~~~-~~-~~l~fI~Cm~~~~----~~~~~~~~~~~~Ca~~~gld~~~I~ 152 (258)
|+. . =..|.+.||-+-++.. .. .+..|+.=+.+.. .++ ++.+..-.||.++|+|.+.++
T Consensus 80 ~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI-~D~dVL~diA~~~GLD~~~~~ 158 (225)
T COG2761 80 LEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNI-GDEDVLADIAEEVGLDREEFK 158 (225)
T ss_pred HHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCC-CcHHHHHHHHHHhCCCHHHHH
Confidence 111 0 2356678887766632 22 4777877765322 222 456677899999999999998
Q ss_pred hhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeec
Q 025043 153 NCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQAL 191 (258)
Q Consensus 153 ~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 191 (258)
.=..++...+=+.+-.+....+ .++-||+.+|+|++.
T Consensus 159 ~~L~s~~~~~avr~d~~~A~e~--gI~gVP~fv~d~~~~ 195 (225)
T COG2761 159 ADLASDAAKDAVRQDEAAAQEM--GIRGVPTFVFDGKYA 195 (225)
T ss_pred HHHhChHHHHHHHHHHHHHHHC--CCccCceEEEcCcEe
Confidence 8888888877777766666654 599999999977764
No 12
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=94.95 E-value=0.05 Score=45.74 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=47.8
Q ss_pred hHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeec
Q 025043 134 EAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQAL 191 (258)
Q Consensus 134 ~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 191 (258)
......+++..|+|.+.+.++.++.+.++.+.+..+....+ .+..|||++|||+..
T Consensus 123 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~ 178 (192)
T cd03022 123 PAVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF 178 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence 34567899999999999999999998888888887777765 589999999999975
No 13
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=1.8 Score=38.07 Aligned_cols=138 Identities=19% Similarity=0.258 Sum_probs=76.0
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCC-eeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhhCC
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLST-IVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWP 111 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~-ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~~~ 111 (258)
..+|.|.+|++-.||.|.+.+- .|...+. .-.+ .+.++.+||-.-. .-.|++ +-..-.|+.+.-.
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~-~l~~~~i-~~~~~~~~~~~~~f~~~~------~~~~~~------a~~~~~~~~~~~~ 148 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFP-ELKKKYI-DDGKVRLVLREFPFLDPA------CPYCRR------AAQAARCAADQGI 148 (244)
T ss_pred CCCceEEEEecCcCccHHHHHH-HHHHHhh-hcCCCceEEEEeecCCCC------cHHHHH------HHHHHHHhccccc
Confidence 3489999999999999955543 3333332 1122 2344444442111 011332 3344445544321
Q ss_pred cchhhhhhhhhhccccCCCCCchHHHHHHHHHcC-CC--c--hhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEE
Q 025043 112 DVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLG-FS--Q--QPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTV 186 (258)
Q Consensus 112 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~g-ld--~--~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~i 186 (258)
..+|.|..=+.++.. .....+..|+.... .. + .....|.+......+..+.-+....+. ++..|+++|
T Consensus 149 --~~y~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~g--v~gTPt~~v 221 (244)
T COG1651 149 --VRYWAFHDALFGSQA---EAWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQLG--VNGTPTFIV 221 (244)
T ss_pred --hhHHHHHHHHhhccc---cchhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhcC--CCcCCeEEE
Confidence 457888777664321 22334556655431 11 1 356667654456666666666666554 899999999
Q ss_pred CCeec
Q 025043 187 NNQAL 191 (258)
Q Consensus 187 NG~~~ 191 (258)
||+..
T Consensus 222 ~~~~~ 226 (244)
T COG1651 222 NGKLV 226 (244)
T ss_pred CCeee
Confidence 99754
No 14
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=85.08 E-value=1.9 Score=39.09 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=33.6
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEee
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGN 78 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGn 78 (258)
...+..|.||..-.||+|++|-. ++.+..+ . .-|.++++|++-
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~-~l~~~~~--~-g~V~v~~ip~~~ 157 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQ-QARPWVD--S-GKVQLRHILVGI 157 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHH-HHHHHhh--c-CceEEEEEeccc
Confidence 46778999999999999999964 5667654 2 348889998865
No 15
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=83.46 E-value=1.8 Score=31.13 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=31.5
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeee
Q 025043 38 LSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQ 80 (258)
Q Consensus 38 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~ 80 (258)
|.+|+.-.||.|..+. .+|.+... ...+-++++++|++-..
T Consensus 1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccCC
Confidence 5689999999999995 46777653 45677899999887655
No 16
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=76.11 E-value=5 Score=32.73 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=25.8
Q ss_pred ccCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEe
Q 025043 31 AKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYG 77 (258)
Q Consensus 31 ~~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyG 77 (258)
....++++.|+.|+=||||++++= .|..+.+ ....++++++.-.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP-~l~kiae--~~p~i~~~~i~rd 81 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVP-VLAKIAE--ANPNIEVRIILRD 81 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHH-HHHHHHH--H-TTEEEEEE-HH
T ss_pred hcCCCcEEEEEECCCchhHHHHHH-HHHHHHH--hCCCCeEEEEEec
Confidence 356788999999999999999852 3444433 2346888888654
No 17
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=73.86 E-value=6.1 Score=33.81 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=31.4
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeee
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNA 79 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA 79 (258)
...++.|.+|..-.||+|++|.. .|.+ ..+-+.|++++|.-.
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~-~l~~-----~~~~v~v~~~~~p~~ 116 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEK-ELKP-----NADGVTVRIFPVPIL 116 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHH-HHhh-----ccCceEEEEEEcCcC
Confidence 35788999999999999999953 4444 234578888888644
No 18
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=72.92 E-value=7.5 Score=26.88 Aligned_cols=17 Identities=29% Similarity=0.997 Sum_probs=15.6
Q ss_pred eEEEEEEEeCChhhHHH
Q 025043 36 VKLSLYYESLCPYCANF 52 (258)
Q Consensus 36 V~V~vYyESlCPd~~~F 52 (258)
|+|.+|+-+-||.|.+.
T Consensus 1 ~~v~~f~~~~C~~C~~~ 17 (67)
T cd02973 1 VNIEVFVSPTCPYCPDA 17 (67)
T ss_pred CEEEEEECCCCCCcHHH
Confidence 68999999999999776
No 19
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=70.02 E-value=16 Score=28.11 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 139 KCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 139 ~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
+-.++.|+++..+ +--....|.++.....+.|. .+.||.|+|||++.+
T Consensus 26 ~~L~~~~i~~~~v-did~~~~~~~~~~~l~~~tg-----~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 26 RLLLTLGVNPAVH-EIDKEPAGKDIENALSRLGC-----SPAVPAVFVGGKLVG 73 (99)
T ss_pred HHHHHcCCCCEEE-EcCCCccHHHHHHHHHHhcC-----CCCcCeEEECCEEEc
Confidence 3455667766532 33346678888877776663 578999999999985
No 20
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=67.89 E-value=11 Score=26.68 Aligned_cols=25 Identities=32% Similarity=0.681 Sum_probs=19.1
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHH
Q 025043 36 VKLSLYYESLCPYCANFIENQLVKVF 61 (258)
Q Consensus 36 V~V~vYyESlCPd~~~Fi~~qL~P~~ 61 (258)
|+|.+|+-+-||.|+... ..|..+.
T Consensus 1 ~~v~~f~~~~C~~C~~~~-~~l~~l~ 25 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAK-RVVEEVA 25 (82)
T ss_pred CEEEEEECCCCcchHHHH-HHHHHHH
Confidence 789999999999999773 3444443
No 21
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=67.69 E-value=8.6 Score=33.26 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCchhhh---hhccCCchHHHHHHHHHHhccCCCCCceeeEEEECC
Q 025043 137 WRKCCNDLGFSQQPID---NCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNN 188 (258)
Q Consensus 137 ~~~Ca~~~gld~~~I~---~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 188 (258)
...++...|+|++... .-+.+..+++.+.++.++...+ .+..||+++||+
T Consensus 135 L~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~--Gv~GVP~fvv~~ 187 (209)
T cd03021 135 ISVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKY--GAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEEc
Confidence 3589999999865444 4445767777777766655554 689999999964
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.26 E-value=2.4 Score=33.18 Aligned_cols=8 Identities=38% Similarity=0.131 Sum_probs=5.1
Q ss_pred CCCCCchh
Q 025043 1 MAACHSLP 8 (258)
Q Consensus 1 m~~~~~~~ 8 (258)
|+|+..|+
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 89776433
No 23
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=12 Score=29.73 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred cCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 156 QSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 156 ~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
...+|.++.....+.|.. +-||.|+|||++.+
T Consensus 48 ~~~~g~eiq~~l~~~tg~-----~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 48 EDEDGSEIQKALKKLTGQ-----RTVPNVFIGGKFIG 79 (104)
T ss_pred CCCCcHHHHHHHHHhcCC-----CCCCEEEECCEEEc
Confidence 347888998888877653 48999999999985
No 24
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=60.05 E-value=21 Score=25.24 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 137 WRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 137 ~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
+.+.++..|++++.+ +..+.. ....+..+.+ + ...||.|+|||++.+
T Consensus 17 a~~~L~~~gi~~~~~-di~~~~---~~~~el~~~~----g-~~~vP~v~i~~~~iG 63 (73)
T cd03027 17 VRLFLREKGLPYVEI-NIDIFP---ERKAELEERT----G-SSVVPQIFFNEKLVG 63 (73)
T ss_pred HHHHHHHCCCceEEE-ECCCCH---HHHHHHHHHh----C-CCCcCEEEECCEEEe
Confidence 456677889888765 333322 2222222222 2 367899999999985
No 25
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=57.60 E-value=7.6 Score=28.33 Aligned_cols=20 Identities=20% Similarity=0.642 Sum_probs=16.2
Q ss_pred CCeeEEEEEEEeCChhhHHH
Q 025043 33 SQKVKLSLYYESLCPYCANF 52 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~F 52 (258)
..+-.|.||.-+-||+|++-
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~a 24 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKA 24 (79)
T ss_pred CCCCCEEEEECCCCHhHHHH
Confidence 44556889999999999886
No 26
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=56.17 E-value=17 Score=30.54 Aligned_cols=20 Identities=40% Similarity=1.080 Sum_probs=16.4
Q ss_pred CeeEEEEEEEeCChhhHHHH
Q 025043 34 QKVKLSLYYESLCPYCANFI 53 (258)
Q Consensus 34 ~kV~V~vYyESlCPd~~~Fi 53 (258)
....|-.|+-|-||.|++.+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~ 69 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFA 69 (153)
T ss_pred CCCEEEEEECCCChhHHHHH
Confidence 34458889999999999984
No 27
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=55.66 E-value=4.7 Score=34.49 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=34.7
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCe-eEEEEEEEeeeeEeC-CCCceeecCChh
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTI-VNLRLVPYGNAQIRG-PDKTIICQHGQN 95 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~i-vdl~lVPyGnA~~~~-~~~~f~CQHG~~ 95 (258)
..||-+-.|--..||.||.| +=.|.++|+ .+.+- -.|++|-...=+..+ -+.-+.++||+-
T Consensus 32 ~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe-~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDF-TPILKDFYE-ELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CCcEEEEEEEEEECCchhhC-CchHHHHHH-HHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 34665555566789999999 678889986 45432 134444221111000 112467777764
No 28
>PF13728 TraF: F plasmid transfer operon protein
Probab=55.59 E-value=8.6 Score=34.08 Aligned_cols=39 Identities=26% Similarity=0.628 Sum_probs=29.7
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEE
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPY 76 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPy 76 (258)
-.++.-+-++|+|-||+|+.| .|++. .+.+.-.|+++|+
T Consensus 118 la~~~gL~~F~~~~C~~C~~~-----~pil~-~~~~~yg~~v~~v 156 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQ-----APILQ-QFADKYGFSVIPV 156 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHH-----HHHHH-HHHHHhCCEEEEE
Confidence 457888999999999999888 56654 4555557777776
No 29
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=55.02 E-value=9.7 Score=25.74 Aligned_cols=16 Identities=38% Similarity=0.980 Sum_probs=13.2
Q ss_pred EEEEEEEeCChhhHHH
Q 025043 37 KLSLYYESLCPYCANF 52 (258)
Q Consensus 37 ~V~vYyESlCPd~~~F 52 (258)
+|.+|....||+|++.
T Consensus 1 ~v~ly~~~~Cp~C~~~ 16 (72)
T cd02066 1 KVVVFSKSTCPYCKRA 16 (72)
T ss_pred CEEEEECCCCHHHHHH
Confidence 3678999999999876
No 30
>PHA03050 glutaredoxin; Provisional
Probab=54.81 E-value=35 Score=26.88 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHcCC---CchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 138 RKCCNDLGF---SQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 138 ~~Ca~~~gl---d~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
.+..+..++ +++.+ +--+...+.++..+..+.|. .+.||.|+|||++.+
T Consensus 30 k~~L~~~~i~~~~~~~i-~i~~~~~~~~~~~~l~~~tG-----~~tVP~IfI~g~~iG 81 (108)
T PHA03050 30 LDILNKFSFKRGAYEIV-DIKEFKPENELRDYFEQITG-----GRTVPRIFFGKTSIG 81 (108)
T ss_pred HHHHHHcCCCcCCcEEE-ECCCCCCCHHHHHHHHHHcC-----CCCcCEEEECCEEEe
Confidence 455666676 33221 11123346666666666663 468999999999984
No 31
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=53.66 E-value=27 Score=26.37 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=18.5
Q ss_pred cCCeeEEEEEEEeCChhhHHH
Q 025043 32 KSQKVKLSLYYESLCPYCANF 52 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~F 52 (258)
=..+|+|.+|+-.-||+|...
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~ 30 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDV 30 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHH
Confidence 367899999999999999865
No 32
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=51.28 E-value=17 Score=26.60 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=16.3
Q ss_pred CceeeEEEECCeecHHHHhHHHHH
Q 025043 178 HRFVPWVTVNNQALEEAFQNFIAY 201 (258)
Q Consensus 178 ~~~VPwI~iNG~~~~~a~~nL~~~ 201 (258)
...||.|+|||++.. ..++|..+
T Consensus 56 ~~~vP~ifi~g~~ig-g~~~~~~~ 78 (85)
T PRK11200 56 VETVPQIFVDQKHIG-GCTDFEAY 78 (85)
T ss_pred CCcCCEEEECCEEEc-CHHHHHHH
Confidence 468999999999985 23444443
No 33
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=50.53 E-value=11 Score=26.41 Aligned_cols=16 Identities=31% Similarity=0.937 Sum_probs=14.0
Q ss_pred EEEEEEEeCChhhHHH
Q 025043 37 KLSLYYESLCPYCANF 52 (258)
Q Consensus 37 ~V~vYyESlCPd~~~F 52 (258)
+|.||+-+-||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 3789999999999885
No 34
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=49.89 E-value=13 Score=26.44 Aligned_cols=16 Identities=31% Similarity=0.928 Sum_probs=13.7
Q ss_pred EEEEEEEeCChhhHHH
Q 025043 37 KLSLYYESLCPYCANF 52 (258)
Q Consensus 37 ~V~vYyESlCPd~~~F 52 (258)
+|.+|+...||+|.+.
T Consensus 1 ~v~~y~~~~Cp~C~~~ 16 (82)
T cd03419 1 PVVVFSKSYCPYCKRA 16 (82)
T ss_pred CEEEEEcCCCHHHHHH
Confidence 3789999999999877
No 35
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=49.72 E-value=31 Score=30.80 Aligned_cols=42 Identities=19% Similarity=0.488 Sum_probs=29.3
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeee
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNA 79 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA 79 (258)
..+..|.+|..-.||+|+++-. +|.... +. + +.+++++|...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~-~l~~~~--~~-~-v~v~~~~~P~~ 147 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHE-QMKDYN--AL-G-ITVRYLAFPRQ 147 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHH-HHHHHh--cC-C-eEEEEEeccCC
Confidence 5677899999999999999953 444432 21 2 67777766543
No 36
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=49.45 E-value=23 Score=29.34 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=23.4
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEE
Q 025043 38 LSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPY 76 (258)
Q Consensus 38 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPy 76 (258)
|++|+.-.||.|--.. ..|..+.. .+. ++|++.||
T Consensus 1 i~~~~D~~cP~cy~~~-~~l~~~~~-~~~--~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAH-ERLPALAA-RHG--ATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHH-HHHHHHHH-HhC--CeeEEeee
Confidence 5799999999995553 33444432 232 77888888
No 37
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=49.17 E-value=34 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.627 Sum_probs=19.0
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHH
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVK 59 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P 59 (258)
...+-.|-+|+---||+|+++-. ++.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~-~~~~ 29 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEK-ELFP 29 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHH-HHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHH-HHHH
Confidence 45677888889999999999854 5554
No 38
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=46.82 E-value=12 Score=34.19 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=28.2
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEe
Q 025043 34 QKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYG 77 (258)
Q Consensus 34 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyG 77 (258)
+.--+-++|+|-||+|..| .|++. .+.+.-.|.++|+.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~-----aPil~-~fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL-----AQVIN-DFRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHH-----HHHHH-HHHHHhCCeEEEEe
Confidence 4577889999999999887 56664 45555666777763
No 39
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=46.52 E-value=14 Score=26.38 Aligned_cols=16 Identities=31% Similarity=0.908 Sum_probs=13.3
Q ss_pred EEEEEEeCChhhHHHH
Q 025043 38 LSLYYESLCPYCANFI 53 (258)
Q Consensus 38 V~vYyESlCPd~~~Fi 53 (258)
|.+|+.+.||+|++..
T Consensus 1 V~~f~~~~Cp~C~~~~ 16 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAK 16 (84)
T ss_pred CEEEECCCChhHHHHH
Confidence 5789999999998873
No 40
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=43.45 E-value=19 Score=24.43 Aligned_cols=15 Identities=33% Similarity=0.937 Sum_probs=9.3
Q ss_pred EEEEEEeCChhhHHH
Q 025043 38 LSLYYESLCPYCANF 52 (258)
Q Consensus 38 V~vYyESlCPd~~~F 52 (258)
|.||...-||+|.+.
T Consensus 1 V~vy~~~~C~~C~~~ 15 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKA 15 (60)
T ss_dssp EEEEESTTSHHHHHH
T ss_pred cEEEEcCCCcCHHHH
Confidence 456666666666655
No 41
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=40.64 E-value=17 Score=33.30 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEE
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPY 76 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPy 76 (258)
.++--+-++|.|-||+|+.| .|++. .+.+.-.|.++|+
T Consensus 149 a~~~gL~fFy~~~C~~C~~~-----apil~-~fa~~ygi~v~~V 186 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKM-----APVIQ-AFAKEYGISVIPI 186 (256)
T ss_pred HhceeEEEEECCCCchhHHH-----HHHHH-HHHHHhCCeEEEE
Confidence 45578999999999999887 46553 3555555677776
No 42
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=40.15 E-value=28 Score=24.66 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=15.0
Q ss_pred EEEEEEEeCChhhHHHH
Q 025043 37 KLSLYYESLCPYCANFI 53 (258)
Q Consensus 37 ~V~vYyESlCPd~~~Fi 53 (258)
.|.||.-+.||+|++-.
T Consensus 2 ~v~ly~~~~C~~C~ka~ 18 (73)
T cd03027 2 RVTIYSRLGCEDCTAVR 18 (73)
T ss_pred EEEEEecCCChhHHHHH
Confidence 58899999999999873
No 43
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=38.12 E-value=25 Score=24.64 Aligned_cols=15 Identities=33% Similarity=1.017 Sum_probs=11.5
Q ss_pred EEEEEEeCChhhHHH
Q 025043 38 LSLYYESLCPYCANF 52 (258)
Q Consensus 38 V~vYyESlCPd~~~F 52 (258)
|.||.-+.||+|.+.
T Consensus 2 i~ly~~~~Cp~C~~a 16 (75)
T cd03418 2 VEIYTKPNCPYCVRA 16 (75)
T ss_pred EEEEeCCCChHHHHH
Confidence 677888888888775
No 44
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=37.96 E-value=86 Score=22.75 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=27.0
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCC--CeeEEEEEEE
Q 025043 34 QKVKLSLYYESLCPYCANFIENQLVKVFNTDLS--TIVNLRLVPY 76 (258)
Q Consensus 34 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--~ivdl~lVPy 76 (258)
.|+.+-.|+-+-||.|++++ ..|..+++ ++. +-++|=.|..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~-~~l~~l~~-~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL-PKLKELYK-KYKKKDDVEFVFVSL 43 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH-HHHHHHHH-HHTTTTTEEEEEEE-
T ss_pred CCEEEEEEECCCCHHHHHHH-HHHHHHHH-HhCCCCCEEEEEEEe
Confidence 36778889999999999986 46777665 444 4455544443
No 45
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=37.30 E-value=25 Score=25.74 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=15.3
Q ss_pred EEEEEEEeCChhhHHHH
Q 025043 37 KLSLYYESLCPYCANFI 53 (258)
Q Consensus 37 ~V~vYyESlCPd~~~Fi 53 (258)
+|.||+-+-||.|.+..
T Consensus 2 ~v~iy~~~~C~~C~~a~ 18 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAK 18 (85)
T ss_pred EEEEEeCCCChhHHHHH
Confidence 68999999999998873
No 46
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=36.43 E-value=20 Score=24.33 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=13.1
Q ss_pred EEEEEEeCChhhHHH
Q 025043 38 LSLYYESLCPYCANF 52 (258)
Q Consensus 38 V~vYyESlCPd~~~F 52 (258)
|.+|+-+-||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 789999999999875
No 47
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=35.98 E-value=67 Score=27.65 Aligned_cols=35 Identities=29% Similarity=0.654 Sum_probs=24.8
Q ss_pred EEEEEEEeCChhhHHHHH-HhhHHHHHhcCCCeeEEEEEEE
Q 025043 37 KLSLYYESLCPYCANFIE-NQLVKVFNTDLSTIVNLRLVPY 76 (258)
Q Consensus 37 ~V~vYyESlCPd~~~Fi~-~qL~P~~~~~l~~ivdl~lVPy 76 (258)
+|++|+.-.||.| ||- ++|..+.. ..-++|++.||
T Consensus 2 ~Id~~~D~vcPwc--ylg~~~l~~~~~---~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYS--YLAFEVLCRYQT---AWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHH--HHHHHHHHHHHH---HhCCeEEEEee
Confidence 5889999999999 443 34444443 13378888898
No 48
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=35.72 E-value=27 Score=23.66 Aligned_cols=16 Identities=31% Similarity=0.943 Sum_probs=13.2
Q ss_pred EEEEEEEeCChhhHHH
Q 025043 37 KLSLYYESLCPYCANF 52 (258)
Q Consensus 37 ~V~vYyESlCPd~~~F 52 (258)
+|.+|+-+-||+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 3788888999999875
No 49
>PHA03050 glutaredoxin; Provisional
Probab=35.33 E-value=23 Score=27.88 Aligned_cols=16 Identities=31% Similarity=0.978 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHH
Q 025043 37 KLSLYYESLCPYCANF 52 (258)
Q Consensus 37 ~V~vYyESlCPd~~~F 52 (258)
+|.||.-+-||+|++-
T Consensus 14 ~V~vys~~~CPyC~~a 29 (108)
T PHA03050 14 KVTIFVKFTCPFCRNA 29 (108)
T ss_pred CEEEEECCCChHHHHH
Confidence 5899999999999886
No 50
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=33.48 E-value=26 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.424 Sum_probs=15.1
Q ss_pred EEEEEEEeCChhhHHHH
Q 025043 37 KLSLYYESLCPYCANFI 53 (258)
Q Consensus 37 ~V~vYyESlCPd~~~Fi 53 (258)
+|.||--+.||+|.+.-
T Consensus 9 ~Vvvysk~~Cp~C~~ak 25 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVK 25 (99)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 58899999999999873
No 51
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=33.44 E-value=1.2e+02 Score=22.46 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=24.6
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCC
Q 025043 32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLST 67 (258)
Q Consensus 32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ 67 (258)
..+++-+-+|+-+-||.|+.+.. .|.++.+ ++.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~-~l~~l~~-~~~~ 44 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKP-ILNKVID-EFDG 44 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHH-HHHHHHH-HhCC
Confidence 46788888999999999999853 4555543 4444
No 52
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=33.26 E-value=1.1e+02 Score=23.26 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=27.7
Q ss_pred HHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 138 RKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 138 ~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
.+-++..|+++..+.- . ...++..+..+.|. ...||.|+|||++.+
T Consensus 34 k~lL~~~~i~~~~~di-~---~~~~~~~~l~~~tg-----~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 34 VQILKACGVPFAYVNV-L---EDPEIRQGIKEYSN-----WPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHcCCCEEEEEC-C---CCHHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 3445667887765432 1 12344444444442 358999999999974
No 53
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.02 E-value=30 Score=33.65 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCccc---------ccccccCCeeEEEEEEEeC
Q 025043 9 FVLSILLLIFISPSLSFS---------EDAAAKSQKVKLSLYYESL 45 (258)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~---------~~~~~~~~kV~V~vYyESl 45 (258)
||||++||+++....+.. +.....-.-|+|++||.+-
T Consensus 16 ff~A~~Lfl~vn~~n~~N~~~t~~~~~~t~~~tltdvpvdvlYD~~ 61 (403)
T COG4856 16 FFFAILLFLYVNNNNFNNPISTIKPTSETYTLTLTDVPVDVLYDSD 61 (403)
T ss_pred HHHHHHhheeecccccCCcccccccccccccceeeeceeEEEEccc
Confidence 446767777776663222 1111234568999999763
No 54
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=32.78 E-value=25 Score=25.09 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.5
Q ss_pred CceeeEEEECCeecH
Q 025043 178 HRFVPWVTVNNQALE 192 (258)
Q Consensus 178 ~~~VPwI~iNG~~~~ 192 (258)
...||.|+|||+...
T Consensus 47 ~~~vP~i~i~g~~ig 61 (79)
T TIGR02181 47 RRTVPQIFIGDVHVG 61 (79)
T ss_pred CCCcCEEEECCEEEc
Confidence 468899999999874
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=31.73 E-value=32 Score=27.48 Aligned_cols=20 Identities=25% Similarity=0.673 Sum_probs=15.9
Q ss_pred CCeeEEEEEEEeCChhhHHH
Q 025043 33 SQKVKLSLYYESLCPYCANF 52 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~F 52 (258)
..+.-|-.|+-+-||+|+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~ 41 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKF 41 (122)
T ss_pred cCCcEEEEEECCCChhHHHH
Confidence 34446777889999999998
No 56
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.61 E-value=29 Score=25.66 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=12.3
Q ss_pred CCceeeEEEECCeecH
Q 025043 177 PHRFVPWVTVNNQALE 192 (258)
Q Consensus 177 ~~~~VPwI~iNG~~~~ 192 (258)
+.+-||.|+|||++..
T Consensus 50 g~~tvP~I~i~~~~ig 65 (80)
T COG0695 50 GQRTVPQIFIGGKHVG 65 (80)
T ss_pred CCCCcCEEEECCEEEe
Confidence 3578899999988764
No 57
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=30.98 E-value=24 Score=28.60 Aligned_cols=34 Identities=29% Similarity=0.614 Sum_probs=26.4
Q ss_pred CChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeE
Q 025043 45 LCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQI 81 (258)
Q Consensus 45 lCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~ 81 (258)
.||+|..+ +-|.-.+- .+.+.+||+.|+|-+.+.
T Consensus 23 ~Cp~c~~i--EGlLa~~P-~l~~~ldV~rV~f~RPR~ 56 (112)
T PF11287_consen 23 YCPHCAAI--EGLLASFP-DLRERLDVRRVDFPRPRQ 56 (112)
T ss_pred ECCchHHH--HhHHhhCh-hhhhcccEEEeCCCCchH
Confidence 59999765 45666663 688999999999987763
No 58
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=30.74 E-value=1.7e+02 Score=21.76 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 137 WRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 137 ~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
+.+-++..|+++..+.-= ...++..+..+.|. ...||.|+|||++.+
T Consensus 29 ak~~L~~~~i~y~~idv~----~~~~~~~~l~~~~g-----~~tvP~vfi~g~~iG 75 (90)
T cd03028 29 VVQILNQLGVDFGTFDIL----EDEEVRQGLKEYSN-----WPTFPQLYVNGELVG 75 (90)
T ss_pred HHHHHHHcCCCeEEEEcC----CCHHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 345567778887665421 12344444444442 457999999999975
No 59
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=30.32 E-value=33 Score=25.45 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=15.1
Q ss_pred ceeeEEEECCeecHHHHhHHHHH
Q 025043 179 RFVPWVTVNNQALEEAFQNFIAY 201 (258)
Q Consensus 179 ~~VPwI~iNG~~~~~a~~nL~~~ 201 (258)
..||.|+|||++.+. ..+|.++
T Consensus 56 ~tVP~ifi~g~~igG-~~dl~~~ 77 (86)
T TIGR02183 56 ETVPQIFVDEKHVGG-CTDFEQL 77 (86)
T ss_pred CCcCeEEECCEEecC-HHHHHHH
Confidence 578999999998752 2444444
No 60
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=30.28 E-value=84 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=19.9
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHH
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVF 61 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~ 61 (258)
..+.-+-.||-+-|+.|+++. .++..+.
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~-~~~~~~~ 44 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALA-PIYEELA 44 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHh-hHHHHHH
Confidence 346677788999999999874 3444443
No 61
>PRK10638 glutaredoxin 3; Provisional
Probab=30.02 E-value=45 Score=24.28 Aligned_cols=16 Identities=25% Similarity=0.945 Sum_probs=12.2
Q ss_pred EEEEEEEeCChhhHHH
Q 025043 37 KLSLYYESLCPYCANF 52 (258)
Q Consensus 37 ~V~vYyESlCPd~~~F 52 (258)
+|.+|.-+-||+|++.
T Consensus 3 ~v~ly~~~~Cp~C~~a 18 (83)
T PRK10638 3 NVEIYTKATCPFCHRA 18 (83)
T ss_pred cEEEEECCCChhHHHH
Confidence 4678888888888766
No 62
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=29.72 E-value=39 Score=29.40 Aligned_cols=34 Identities=26% Similarity=0.713 Sum_probs=23.0
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEe
Q 025043 38 LSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYG 77 (258)
Q Consensus 38 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyG 77 (258)
|-+|+.|-||.|++++- .|..+++ +. .+.++++.
T Consensus 73 lV~FwaswCp~C~~e~P-~L~~l~~-~~----g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDP-VLKQLAQ-QY----GFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHHH-HHHHHHH-Hc----CCEEEEEE
Confidence 67899999999999952 3444443 22 46776663
No 63
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=29.65 E-value=40 Score=23.66 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=11.7
Q ss_pred CceeeEEEECCeecH
Q 025043 178 HRFVPWVTVNNQALE 192 (258)
Q Consensus 178 ~~~VPwI~iNG~~~~ 192 (258)
...||.|+|||++.+
T Consensus 48 ~~~vP~ifi~g~~ig 62 (72)
T cd03029 48 AMTVPQVFIDGELIG 62 (72)
T ss_pred CCCcCeEEECCEEEe
Confidence 457888888888875
No 64
>PRK10824 glutaredoxin-4; Provisional
Probab=28.60 E-value=1.7e+02 Score=23.54 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 138 RKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 138 ~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
.+-.+..|+++..+.-= ...++.....+.|. ...||-|+|||++.+
T Consensus 37 k~lL~~~~i~~~~idi~----~d~~~~~~l~~~sg-----~~TVPQIFI~G~~IG 82 (115)
T PRK10824 37 VQALSACGERFAYVDIL----QNPDIRAELPKYAN-----WPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHcCCCceEEEec----CCHHHHHHHHHHhC-----CCCCCeEEECCEEEc
Confidence 34455667776544321 12244444444443 469999999999985
No 65
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.93 E-value=43 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=12.9
Q ss_pred CCCCCchhHHHHHHHHHHhcCCCccc
Q 025043 1 MAACHSLPFVLSILLLIFISPSLSFS 26 (258)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~~~~~~~ 26 (258)
||++- |++++|++.++...+++|
T Consensus 1 MA~Kl---~vialLC~aLva~vQ~AP 23 (65)
T PF10731_consen 1 MASKL---IVIALLCVALVAIVQSAP 23 (65)
T ss_pred Ccchh---hHHHHHHHHHHHHHhcCc
Confidence 66653 334555555555666666
No 66
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=25.63 E-value=54 Score=23.76 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.9
Q ss_pred CCeeEEEEEEEeCChhhHHHH
Q 025043 33 SQKVKLSLYYESLCPYCANFI 53 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi 53 (258)
..++-|-.||.+-|+.|+.+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~ 32 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA 32 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC
Confidence 577889999999999999984
No 67
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=97 Score=25.62 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeee
Q 025043 43 ESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNA 79 (258)
Q Consensus 43 ESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA 79 (258)
+|-||||++.- -.+..+++ ....-+.|--|.-|+-
T Consensus 42 qSWCPdCV~AE-Pvi~~alk-~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 42 QSWCPDCVAAE-PVINEALK-HAPEDVHFVHVYVGNR 76 (128)
T ss_pred CcCCchHHHhh-HHHHHHHH-hCCCceEEEEEEecCC
Confidence 45599999872 22334443 3445555555555654
No 68
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=24.13 E-value=1.1e+02 Score=22.02 Aligned_cols=33 Identities=27% Similarity=0.541 Sum_probs=22.0
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCC
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLST 67 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ 67 (258)
..+.-|-.+|-..||.|+++. ..|..+.. .+.+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~-~~~~~~~~-~~~~ 48 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFK-PILEKLAK-EYKD 48 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHH-HHHHHHHH-HTTT
T ss_pred cCCCEEEEEeCCCCCcccccc-ceeccccc-cccc
Confidence 356677778889999999984 34444443 3444
No 69
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=23.86 E-value=1.5e+02 Score=23.69 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=14.7
Q ss_pred cCCeeEEEEEEEe--CChhhHHH
Q 025043 32 KSQKVKLSLYYES--LCPYCANF 52 (258)
Q Consensus 32 ~~~kV~V~vYyES--lCPd~~~F 52 (258)
..+.+.|-.||.. .||+|+.+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i 47 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDV 47 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhh
Confidence 3445566666666 79999876
No 70
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=23.35 E-value=1.5e+02 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=16.2
Q ss_pred CCeeEEEEEEEeCChhhHHH
Q 025043 33 SQKVKLSLYYESLCPYCANF 52 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~F 52 (258)
..++-|-.||-+-||.|+.+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l 65 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNF 65 (152)
T ss_pred CCCEEEEEEECCCCHHHHHH
Confidence 34567888889999999877
No 71
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.00 E-value=73 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=20.5
Q ss_pred cccCCeeEEEEEEEeCChhhHHHHHHhhHH
Q 025043 30 AAKSQKVKLSLYYESLCPYCANFIENQLVK 59 (258)
Q Consensus 30 ~~~~~kV~V~vYyESlCPd~~~Fi~~qL~P 59 (258)
+...+|--+-++----||+|.+| .+.+.+
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~-KKd~~~ 66 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERF-KKDLKN 66 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHH-HHhhcc
Confidence 34567766777777789999998 445554
No 72
>PRK10329 glutaredoxin-like protein; Provisional
Probab=22.81 E-value=63 Score=23.85 Aligned_cols=16 Identities=19% Similarity=0.609 Sum_probs=13.2
Q ss_pred EEEEEEEeCChhhHHH
Q 025043 37 KLSLYYESLCPYCANF 52 (258)
Q Consensus 37 ~V~vYyESlCPd~~~F 52 (258)
+|.||.-+-||+|.+-
T Consensus 2 ~v~lYt~~~Cp~C~~a 17 (81)
T PRK10329 2 RITIYTRNDCVQCHAT 17 (81)
T ss_pred EEEEEeCCCCHhHHHH
Confidence 5788999999999874
No 73
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=22.65 E-value=50 Score=20.25 Aligned_cols=16 Identities=38% Similarity=1.132 Sum_probs=13.2
Q ss_pred EEEEEEeCChhhHHHH
Q 025043 38 LSLYYESLCPYCANFI 53 (258)
Q Consensus 38 V~vYyESlCPd~~~Fi 53 (258)
|.+|+.+-||+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~ 16 (69)
T cd01659 1 LVLFYAPWCPFCQALR 16 (69)
T ss_pred CEEEECCCChhHHhhh
Confidence 3578899999999884
No 74
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=22.19 E-value=58 Score=22.91 Aligned_cols=15 Identities=33% Similarity=1.056 Sum_probs=7.9
Q ss_pred EEEEEEeCChhhHHH
Q 025043 38 LSLYYESLCPYCANF 52 (258)
Q Consensus 38 V~vYyESlCPd~~~F 52 (258)
+.||+-..||.|++-
T Consensus 2 i~Ly~~~~~p~c~kv 16 (77)
T cd03040 2 ITLYQYKTCPFCCKV 16 (77)
T ss_pred EEEEEcCCCHHHHHH
Confidence 445555555555544
No 75
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=21.61 E-value=2.4e+02 Score=19.74 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=18.9
Q ss_pred eeEEEEEEEeCChhhHHHHHHhhHHHH
Q 025043 35 KVKLSLYYESLCPYCANFIENQLVKVF 61 (258)
Q Consensus 35 kV~V~vYyESlCPd~~~Fi~~qL~P~~ 61 (258)
+.-|-.||.+-||.|+.+.. .+..+.
T Consensus 16 ~~~~v~f~~~~C~~C~~~~~-~~~~~~ 41 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALAP-EYEKLA 41 (101)
T ss_pred CcEEEEEECCCCHHHHhhhH-HHHHHH
Confidence 37788888899999999943 344443
No 76
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.58 E-value=1.4e+02 Score=28.90 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeecH
Q 025043 137 WRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALE 192 (258)
Q Consensus 137 ~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 192 (258)
+.+.++..|++++.|.- -+...+.+++.+..+.-....-+.+.||.|+|||++.+
T Consensus 18 aK~~L~~~gi~~~~idi-~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~ig 72 (410)
T PRK12759 18 AKSWFGANDIPFTQISL-DDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIG 72 (410)
T ss_pred HHHHHHHCCCCeEEEEC-CCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEe
Confidence 45667778888775422 24455555555433210011123578999999999874
No 77
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=21.14 E-value=54 Score=23.15 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=8.1
Q ss_pred EEEEEeCChhhHHH
Q 025043 39 SLYYESLCPYCANF 52 (258)
Q Consensus 39 ~vYyESlCPd~~~F 52 (258)
.||.-.-||+|++-
T Consensus 2 ~ly~~~~Cp~C~~a 15 (72)
T TIGR02194 2 TVYSKNNCVQCKMT 15 (72)
T ss_pred EEEeCCCCHHHHHH
Confidence 45666666666554
No 78
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=61 Score=24.73 Aligned_cols=16 Identities=44% Similarity=0.916 Sum_probs=13.9
Q ss_pred EEEEEeCChhhHHHHH
Q 025043 39 SLYYESLCPYCANFIE 54 (258)
Q Consensus 39 ~vYyESlCPd~~~Fi~ 54 (258)
.+|+--+||||.-|+.
T Consensus 5 ~lfgsn~Cpdca~a~e 20 (85)
T COG4545 5 KLFGSNLCPDCAPAVE 20 (85)
T ss_pred eeeccccCcchHHHHH
Confidence 6899999999999863
No 79
>PTZ00051 thioredoxin; Provisional
Probab=20.54 E-value=87 Score=22.81 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=20.4
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHH
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVF 61 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~ 61 (258)
..+.-|-.||-+-||.|+.+. ..|..+.
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~-~~l~~l~ 44 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIA-PFYEECS 44 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHh-HHHHHHH
Confidence 456778888999999999984 3444433
No 80
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=20.50 E-value=2.7e+02 Score=19.82 Aligned_cols=16 Identities=31% Similarity=1.090 Sum_probs=11.3
Q ss_pred eEEEEEEEeCChhhHHH
Q 025043 36 VKLSLYYESLCPYCANF 52 (258)
Q Consensus 36 V~V~vYyESlCPd~~~F 52 (258)
|+|.+ +-+-||.|...
T Consensus 1 m~I~v-~~~~C~~C~~~ 16 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPEL 16 (76)
T ss_dssp EEEEE-ECSSCTTHHHH
T ss_pred CEEEE-eCCCCCCcHHH
Confidence 56777 55559998855
No 81
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=20.26 E-value=1.3e+02 Score=22.42 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=17.3
Q ss_pred CCeeEEEEEEEeCChhhHHHHH
Q 025043 33 SQKVKLSLYYESLCPYCANFIE 54 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~ 54 (258)
..++-|-.||-+-||.|+.+..
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~ 31 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEK 31 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHH
Confidence 4566666888899999999863
No 82
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.03 E-value=2.1e+02 Score=22.17 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEE
Q 025043 33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLV 74 (258)
Q Consensus 33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lV 74 (258)
..|+-|-.|+-+-||.|++.+ ..|..+++ ++.+ -++.+|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~-p~l~~l~~-~~~~-~~~~vi 60 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTL-PYLTDLEQ-KYKD-DGLVVI 60 (126)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHH-HcCc-CCeEEE
Confidence 457788888999999999885 45777765 4544 244544
Done!