Query 025044
Match_columns 258
No_of_seqs 125 out of 435
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 9E-96 2E-100 623.1 18.5 237 1-237 1-237 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 2.9E-92 6.4E-97 629.5 22.7 238 5-242 1-240 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.6E-87 3.5E-92 598.0 20.9 235 5-239 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 1.3E-83 2.9E-88 562.7 21.8 240 4-243 1-241 (247)
5 PF13424 TPR_12: Tetratricopep 96.2 0.011 2.4E-07 42.5 5.1 55 146-202 21-75 (78)
6 KOG1840 Kinesin light chain [C 93.9 3.2 7E-05 41.4 15.9 187 7-208 201-402 (508)
7 TIGR00990 3a0801s09 mitochondr 92.9 2.2 4.9E-05 42.7 13.5 54 146-201 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 90.7 1.7 3.6E-05 33.0 7.6 73 129-207 2-75 (94)
9 PF12569 NARP1: NMDA receptor- 83.5 52 0.0011 33.0 15.8 62 140-202 156-223 (517)
10 PF07719 TPR_2: Tetratricopept 82.3 3.1 6.8E-05 24.5 4.0 30 8-37 4-33 (34)
11 PF13374 TPR_10: Tetratricopep 79.9 1.8 3.9E-05 26.6 2.4 24 146-169 18-41 (42)
12 PF13174 TPR_6: Tetratricopept 78.9 4.1 8.9E-05 23.7 3.7 31 7-37 2-32 (33)
13 PF13414 TPR_11: TPR repeat; P 77.7 11 0.00024 25.8 6.2 47 146-201 19-66 (69)
14 TIGR00990 3a0801s09 mitochondr 77.7 81 0.0018 31.6 16.0 73 147-228 525-597 (615)
15 TIGR02917 PEP_TPR_lipo putativ 77.6 80 0.0017 31.5 15.1 30 8-37 468-497 (899)
16 PF13181 TPR_8: Tetratricopept 75.6 5 0.00011 23.7 3.4 30 7-36 3-32 (34)
17 PF13428 TPR_14: Tetratricopep 74.8 6.4 0.00014 25.2 4.0 30 8-37 4-33 (44)
18 PF00515 TPR_1: Tetratricopept 72.6 8.8 0.00019 22.7 4.0 30 8-37 4-33 (34)
19 KOG1840 Kinesin light chain [C 71.9 11 0.00024 37.6 6.7 65 126-201 247-311 (508)
20 TIGR02917 PEP_TPR_lipo putativ 71.6 1.1E+02 0.0024 30.4 14.0 56 8-66 706-761 (899)
21 PF05010 TACC: Transforming ac 70.8 12 0.00026 33.0 6.0 83 10-106 123-206 (207)
22 PF04781 DUF627: Protein of un 69.9 6 0.00013 31.6 3.5 41 120-160 33-74 (111)
23 PRK10049 pgaA outer membrane p 67.5 1.3E+02 0.0028 31.3 13.6 58 7-67 85-142 (765)
24 PF13424 TPR_12: Tetratricopep 65.2 12 0.00026 26.3 4.1 38 168-207 1-38 (78)
25 KOG4162 Predicted calmodulin-b 64.6 1.5E+02 0.0033 31.2 13.0 126 92-235 411-580 (799)
26 COG0233 Frr Ribosome recycling 61.8 31 0.00068 30.0 6.6 74 35-109 104-177 (187)
27 PRK11788 tetratricopeptide rep 58.6 1.5E+02 0.0032 27.1 14.7 24 10-33 112-135 (389)
28 PRK10049 pgaA outer membrane p 58.4 2.2E+02 0.0047 29.7 13.3 59 8-68 119-177 (765)
29 smart00028 TPR Tetratricopepti 57.3 25 0.00055 18.4 3.8 29 8-36 4-32 (34)
30 PF13414 TPR_11: TPR repeat; P 57.3 57 0.0012 22.0 7.1 46 7-53 5-50 (69)
31 PF01765 RRF: Ribosome recycli 57.2 49 0.0011 27.7 7.0 74 35-109 84-157 (165)
32 PF13431 TPR_17: Tetratricopep 56.8 11 0.00024 23.1 2.2 34 152-194 1-34 (34)
33 KOG4759 Ribosome recycling fac 55.7 58 0.0013 29.8 7.5 71 36-109 183-253 (263)
34 PF13432 TPR_16: Tetratricopep 55.2 61 0.0013 21.7 6.6 53 10-64 2-54 (65)
35 CHL00033 ycf3 photosystem I as 54.8 1E+02 0.0023 25.0 8.6 68 147-223 89-162 (168)
36 PF13176 TPR_7: Tetratricopept 54.4 24 0.00052 21.5 3.6 26 8-33 2-27 (36)
37 PRK15363 pathogenicity island 52.9 82 0.0018 26.6 7.6 72 143-227 82-155 (157)
38 PF08424 NRDE-2: NRDE-2, neces 52.1 1.2E+02 0.0026 28.1 9.4 94 146-246 118-221 (321)
39 PF13432 TPR_16: Tetratricopep 51.6 37 0.0008 22.9 4.5 33 5-37 31-63 (65)
40 cd02682 MIT_AAA_Arch MIT: doma 51.3 93 0.002 23.0 6.8 27 7-33 8-34 (75)
41 TIGR00496 frr ribosome recycli 51.3 51 0.0011 28.2 6.2 74 35-109 93-166 (176)
42 PF14559 TPR_19: Tetratricopep 50.9 72 0.0016 21.4 6.0 44 147-199 8-51 (68)
43 cd00520 RRF Ribosome recycling 49.1 51 0.0011 28.2 5.9 73 36-109 99-171 (179)
44 TIGR02521 type_IV_pilW type IV 48.9 1.4E+02 0.003 24.0 15.1 56 7-64 33-88 (234)
45 PRK11447 cellulose synthase su 48.1 4.1E+02 0.0088 29.1 14.0 62 8-70 115-176 (1157)
46 PRK14720 transcript cleavage f 48.1 17 0.00036 38.9 3.2 76 116-204 99-180 (906)
47 PRK00083 frr ribosome recyclin 48.0 62 0.0013 28.0 6.3 73 36-109 103-175 (185)
48 CHL00033 ycf3 photosystem I as 47.8 70 0.0015 26.1 6.4 49 147-201 52-100 (168)
49 PF13371 TPR_9: Tetratricopept 47.3 41 0.00088 23.0 4.3 45 147-200 12-56 (73)
50 PRK11447 cellulose synthase su 46.4 4.1E+02 0.0088 29.1 13.6 55 10-66 356-410 (1157)
51 PRK12794 flaF flagellar biosyn 44.6 29 0.00063 28.1 3.5 53 182-234 8-60 (122)
52 TIGR03302 OM_YfiO outer membra 41.8 2.2E+02 0.0047 24.1 14.7 61 6-67 34-96 (235)
53 COG3947 Response regulator con 41.2 46 0.00099 31.5 4.6 107 118-234 216-335 (361)
54 COG4499 Predicted membrane pro 40.2 56 0.0012 31.7 5.1 46 172-217 231-281 (434)
55 cd02656 MIT MIT: domain contai 39.1 1.4E+02 0.0031 21.2 6.2 27 7-33 8-34 (75)
56 TIGR02795 tol_pal_ybgF tol-pal 39.0 1.2E+02 0.0025 22.2 6.0 50 147-202 56-105 (119)
57 PF12895 Apc3: Anaphase-promot 38.8 48 0.001 23.7 3.7 12 186-197 71-82 (84)
58 PRK02603 photosystem I assembl 38.4 1.3E+02 0.0027 24.7 6.6 50 147-202 52-101 (172)
59 PF14559 TPR_19: Tetratricopep 37.5 44 0.00095 22.5 3.1 53 17-71 3-55 (68)
60 PRK12793 flaF flagellar biosyn 36.8 40 0.00086 27.0 3.1 52 182-234 6-58 (115)
61 PLN03088 SGT1, suppressor of 36.8 3.6E+02 0.0078 25.2 10.2 58 7-66 38-95 (356)
62 PF12688 TPR_5: Tetratrico pep 36.4 1.7E+02 0.0037 23.3 6.8 50 147-202 18-67 (120)
63 KOG2002 TPR-containing nuclear 36.4 5.8E+02 0.013 27.9 12.2 133 8-206 167-303 (1018)
64 PF13371 TPR_9: Tetratricopept 36.3 63 0.0014 22.0 3.8 29 8-36 32-60 (73)
65 PRK15359 type III secretion sy 35.1 69 0.0015 25.8 4.4 47 146-201 74-120 (144)
66 cd05804 StaR_like StaR_like; a 34.5 3.4E+02 0.0074 24.3 10.8 34 4-37 42-75 (355)
67 PRK09782 bacteriophage N4 rece 32.3 7E+02 0.015 27.2 14.2 24 9-32 513-536 (987)
68 PF10083 DUF2321: Uncharacteri 32.1 62 0.0014 27.4 3.6 35 22-56 82-116 (158)
69 KOG3089 Predicted DEAD-box-con 32.1 1.5E+02 0.0033 26.8 6.3 80 18-106 78-160 (271)
70 TIGR02795 tol_pal_ybgF tol-pal 32.0 2E+02 0.0043 20.9 7.4 58 8-66 5-64 (119)
71 PF10516 SHNi-TPR: SHNi-TPR; 31.6 48 0.001 21.2 2.3 37 128-167 2-38 (38)
72 PF13429 TPR_15: Tetratricopep 31.0 68 0.0015 28.4 4.0 162 10-203 49-210 (280)
73 PLN03088 SGT1, suppressor of 30.7 1.5E+02 0.0032 27.8 6.5 13 186-198 83-95 (356)
74 PF06552 TOM20_plant: Plant sp 30.7 1.7E+02 0.0037 25.5 6.2 79 133-221 38-122 (186)
75 KOG1107 Membrane coat complex 27.6 1.6E+02 0.0034 30.8 6.2 42 146-187 656-698 (760)
76 PRK11189 lipoprotein NlpI; Pro 27.3 1.3E+02 0.0028 27.3 5.2 38 6-43 237-274 (296)
77 COG2250 Uncharacterized conser 26.6 3.4E+02 0.0074 21.9 9.3 102 7-109 15-129 (132)
78 COG2956 Predicted N-acetylgluc 26.3 1E+02 0.0022 29.6 4.3 47 9-55 218-264 (389)
79 PRK15174 Vi polysaccharide exp 26.2 7.1E+02 0.015 25.4 14.9 31 8-38 113-143 (656)
80 PF12895 Apc3: Anaphase-promot 26.1 1.3E+02 0.0028 21.4 4.2 19 11-29 64-82 (84)
81 PRK11788 tetratricopeptide rep 25.2 2.4E+02 0.0052 25.7 6.7 165 9-205 184-350 (389)
82 smart00745 MIT Microtubule Int 24.7 2.6E+02 0.0056 19.8 6.3 27 7-33 10-36 (77)
83 PF02259 FAT: FAT domain; Int 24.2 5.2E+02 0.011 23.1 11.6 30 6-35 147-176 (352)
84 PRK02603 photosystem I assembl 24.1 3.9E+02 0.0085 21.7 8.1 13 147-159 89-101 (172)
85 PRK15359 type III secretion sy 23.7 1.2E+02 0.0025 24.4 3.8 56 7-64 60-115 (144)
86 cd02678 MIT_VPS4 MIT: domain c 23.7 2.8E+02 0.0061 19.8 6.0 27 7-33 8-34 (75)
87 PF05008 V-SNARE: Vesicle tran 23.5 2.8E+02 0.0061 19.7 6.7 43 23-65 3-45 (79)
88 PF08631 SPO22: Meiosis protei 23.4 5.4E+02 0.012 23.0 9.2 89 146-235 9-100 (278)
89 PF03755 YicC_N: YicC-like fam 23.3 1.8E+02 0.0039 24.1 5.0 63 147-209 81-147 (159)
90 PHA02103 hypothetical protein 23.3 24 0.00053 28.2 -0.3 14 126-139 78-91 (135)
91 cd05804 StaR_like StaR_like; a 23.0 5.5E+02 0.012 23.0 13.3 59 7-65 8-67 (355)
92 PF08717 nsp8: nsp8 replicase; 22.9 98 0.0021 27.1 3.3 37 146-202 15-51 (199)
93 TIGR02552 LcrH_SycD type III s 22.8 3.4E+02 0.0074 20.5 8.7 57 6-64 18-74 (135)
94 PRK10370 formate-dependent nit 22.6 2.4E+02 0.0052 24.1 5.8 48 147-202 90-139 (198)
95 PRK15326 type III secretion sy 22.3 1.4E+02 0.0031 22.5 3.7 35 146-182 20-58 (80)
96 COG4105 ComL DNA uptake lipopr 22.2 2.8E+02 0.0061 25.3 6.3 72 153-230 87-167 (254)
97 PRK15331 chaperone protein Sic 22.0 3.8E+02 0.0082 22.9 6.7 70 146-230 87-156 (165)
98 KOG3785 Uncharacterized conser 22.0 2.1E+02 0.0046 28.0 5.6 37 147-184 161-197 (557)
99 PRK11820 hypothetical protein; 21.3 2.4E+02 0.0052 26.1 5.8 61 150-210 85-145 (288)
100 PF14689 SPOB_a: Sensor_kinase 20.7 92 0.002 21.8 2.3 23 11-33 29-51 (62)
101 PRK10747 putative protoheme IX 20.7 7.1E+02 0.015 23.4 12.3 180 3-207 185-395 (398)
102 PF07309 FlaF: Flagellar prote 20.5 1.1E+02 0.0023 24.3 2.9 47 187-234 11-57 (113)
103 PF09969 DUF2203: Uncharacteri 20.4 4.5E+02 0.0098 21.0 8.2 65 38-102 3-67 (120)
104 KOG0547 Translocase of outer m 20.3 1.1E+02 0.0024 30.9 3.5 40 147-201 132-177 (606)
105 cd02683 MIT_1 MIT: domain cont 20.1 2.9E+02 0.0063 20.2 5.0 27 7-33 8-34 (77)
106 COG3063 PilF Tfp pilus assembl 20.0 1.3E+02 0.0028 27.4 3.6 46 146-200 85-130 (250)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=9e-96 Score=623.06 Aligned_cols=237 Identities=75% Similarity=1.129 Sum_probs=233.6
Q ss_pred CCchHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHH
Q 025044 1 MDKDRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNV 80 (258)
Q Consensus 1 m~~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 80 (258)
|+..|++.+|+|+|++||+||++|++-||.++..+.+|+.+|||||||||||+||.||+|||++++++||++++++..++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHH
Q 025044 81 KRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTA 160 (258)
Q Consensus 81 ~~i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 160 (258)
.+|+.||++|++||..||++|+.+|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcCCC
Q 025044 161 EAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIP 237 (258)
Q Consensus 161 ~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e~~ 237 (258)
...||||||||||||||||||||||+|++++||.|||+|||+||++||+|+|++|+|||+||||||||||+||++.+
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999754
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=2.9e-92 Score=629.52 Aligned_cols=238 Identities=75% Similarity=1.111 Sum_probs=229.5
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHH
Q 025044 5 RENFVYIAKLAEQAERYDEMVDAMKKVANL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKR 82 (258)
Q Consensus 5 re~l~~~AklaeqaeRy~Dm~~~mk~~i~~-~-~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 82 (258)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999877777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHh
Q 025044 83 IKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEA 162 (258)
Q Consensus 83 i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 162 (258)
+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcCCCCCCCc
Q 025044 163 ELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD 242 (258)
Q Consensus 163 ~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e~~~~~~~ 242 (258)
+||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+|+|||||||||++|+++++++++.
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~~ 240 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGAD 240 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986655443
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=1.6e-87 Score=597.98 Aligned_cols=235 Identities=69% Similarity=1.080 Sum_probs=223.5
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHH
Q 025044 5 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIK 84 (258)
Q Consensus 5 re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~ 84 (258)
|++++|||||++|||||+||+++||++++.+++||.|||||||+||||+|+++|+|||+|++++++++.+|++..++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcC
Q 025044 85 EYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAEL 164 (258)
Q Consensus 85 ~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 164 (258)
+||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++.+++++|.++|++|+++|+.+|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcCCCCC
Q 025044 165 SPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 239 (258)
Q Consensus 165 ~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e~~~~ 239 (258)
|||||+||||+||||||||||+|++++||+||++||++|++++++++|++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-83 Score=562.69 Aligned_cols=240 Identities=80% Similarity=1.157 Sum_probs=233.8
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHH
Q 025044 4 DRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRI 83 (258)
Q Consensus 4 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i 83 (258)
+|+++|++|++++||+||+||+.+||.+++.+.+||.+|||||||+|||+||++|++||+|++||||++.++++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHh
Q 025044 84 KEYRQKVEAELSKISTDIMQVIDEHLIPSCTG-GESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEA 162 (258)
Q Consensus 84 ~~yk~kie~EL~~~C~eii~lid~~Lip~~~~-~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 162 (258)
..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||+|||..|++|++++++++++|+.|+++|+.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988 78899999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcCCCCCCCc
Q 025044 163 ELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD 242 (258)
Q Consensus 163 ~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e~~~~~~~ 242 (258)
.|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||||+||++.+++++.
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~~ 240 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEKE 240 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777655
Q ss_pred h
Q 025044 243 E 243 (258)
Q Consensus 243 ~ 243 (258)
.
T Consensus 241 ~ 241 (247)
T KOG0841|consen 241 A 241 (247)
T ss_pred c
Confidence 4
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.19 E-value=0.011 Score=42.53 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
-+.|...|++|+++ ...+++.||...-...|.+..++. +|+.++|+...++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 36799999999999 567999888888888888888777 79999999999998764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.85 E-value=3.2 Score=41.39 Aligned_cols=187 Identities=16% Similarity=0.155 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhc----C--CCCC-HHHHHHHHHHHhhhhhhhhHHHHHHH-hHhhhhhhhcc--
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANL----D--VELT-VEERNLLSVGYKNVIGARRASWRILS-SIEQKEEARGN-- 76 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~----~--~~Ls-~eERnLlsvAyKn~i~~~R~s~R~l~-~ieqk~~~~~~-- 76 (258)
.+.++|.+..+.|||+.++...|+.++. . ..+- ..-.+-|++.|-+. +..+.|..+.. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456888899999999999999998865 1 1222 22344566666554 45666666664 34444443443
Q ss_pred hhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHH
Q 025044 77 ELNVKRIK-----EYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMK 151 (258)
Q Consensus 77 ~~~~~~i~-----~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 151 (258)
+.....+. -|+.-=-.|-...|+.+++|..+. +.++.++-. -.+.++..-.....-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~-----------~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVA-----------AQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHH-----------HHHHHHHHHHHHhcchhHHHH
Confidence 33333333 233444567889999999999883 333333221 122333322222333578999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhc
Q 025044 152 AYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELD 208 (258)
Q Consensus 152 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld 208 (258)
.|+.|+.+....+.+.||.-=|+--|+++.||- +|..++|.++.++|+...-+-.+
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhccc
Confidence 999999999888999999999999999998887 69999999999999887754443
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.93 E-value=2.2 Score=42.71 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.+.|...|++|+.+.. ..++.++..+. .++.+..+|+-.|+.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3667888888876653 23333332222 345555566666778887777666643
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.66 E-value=1.7 Score=32.95 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=52.9
Q ss_pred cccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHh-hhHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 025044 129 YYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAISEL 207 (258)
Q Consensus 129 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 207 (258)
|.+|+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..-
T Consensus 2 ~l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 2 YLRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 345555555554 256888888889998777776655555554 788887776 6999999999999988887543
No 9
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=83.52 E-value=52 Score=33.00 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCC------CCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 140 DERKDVADLSMKAYQAASTTAEAELSP------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 140 ~~~~~~~~~a~~aY~~A~~~a~~~L~p------t~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
..+..++..-...|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|++...+|++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455566666666666554432 2332 347777778888888999999999999998887654
No 10
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.35 E-value=3.1 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
+..++.+..+.|+|+++++++++.+..+|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999987663
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.94 E-value=1.8 Score=26.56 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCc
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHP 169 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~p 169 (258)
.+.|...|++|+.+.+..++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 367999999999999888899998
No 12
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.85 E-value=4.1 Score=23.67 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
-+..+|.+..+.|++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999976653
No 13
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=77.75 E-value=11 Score=25.77 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhC-ChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~-~~~~A~~iak~afd 201 (258)
-+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 36789999999876 24444577888887776 57 79999998888764
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=77.66 E-value=81 Score=31.59 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 226 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLr 226 (258)
+.|...|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-+.-+-+.--+|..++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666654 4566553 22333444444 79999999988888766554322222335667777755555
Q ss_pred hh
Q 025044 227 DN 228 (258)
Q Consensus 227 dN 228 (258)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 54
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.58 E-value=80 Score=31.50 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
+..++.+..+.|+|++++.++.++++.+|.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 455667777777777777777777665444
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.64 E-value=5 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
-+..++++..+.|+++.++.++++.++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999987655
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=74.80 E-value=6.4 Score=25.23 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
++.+|+...+.|++++++..++++++..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999988765
No 18
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.57 E-value=8.8 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
+..++.+..+.++|++++.+.++.++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788889999999999999999988774
No 19
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=71.95 E-value=11 Score=37.64 Aligned_cols=65 Identities=25% Similarity=0.374 Sum_probs=52.0
Q ss_pred ccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 126 KGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 126 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
-|.+||-+..+ ..|...|++|+.+-+..+.++||-.--+.-|.||-||.. |+..+|-..++.|.+
T Consensus 247 ~a~~y~~~~k~----------~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 247 LALVYRSLGKY----------DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHhccH----------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHH
Confidence 36666655442 568999999999999999999999888888999998874 888887777766643
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=71.63 E-value=1.1e+02 Score=30.44 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
...++.+..+.|+|++++..+++++...|.- .-..-+..+|.. .+....+...+..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~ 761 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLA-SGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 4567788888899999999998888765543 223333444433 2444455555543
No 21
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=70.76 E-value=12 Score=33.04 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=49.2
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh-HhhhhhhhcchhHHHHHHHHHH
Q 025044 10 YIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS-IEQKEEARGNELNVKRIKEYRQ 88 (258)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~-ieqk~~~~~~~~~~~~i~~yk~ 88 (258)
|+++|..+-.||+-+ |.-++..-+..++|..-+-..++.-+...+..+|--.. +..-+ ..| .-+.
T Consensus 123 y~~~l~~~eqry~aL----K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe---------~~L-eQK~ 188 (207)
T PF05010_consen 123 YEERLKKEEQRYQAL----KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE---------ESL-EQKT 188 (207)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HHH-HHHH
Confidence 677777777777554 44333333456677777777777777777777776421 10000 001 1222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025044 89 KVEAELSKISTDIMQVID 106 (258)
Q Consensus 89 kie~EL~~~C~eii~lid 106 (258)
+=..||..||+++|.-++
T Consensus 189 kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 189 KENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334799999999987553
No 22
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=69.87 E-value=6 Score=31.64 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=33.7
Q ss_pred eeheeeccccccchhccccc-hhhHHHHHHHHHHHHHHHHHH
Q 025044 120 VFYYKMKGDYYRYLAEFKTG-DERKDVADLSMKAYQAASTTA 160 (258)
Q Consensus 120 Vfy~KmkgDyyRYlaE~~~~-~~~~~~~~~a~~aY~~A~~~a 160 (258)
.|-+...|+.|..+|....+ +-+..+.-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 38889999999999997654 566777889999999997554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=67.52 E-value=1.3e+02 Score=31.35 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSI 67 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~i 67 (258)
-...+|.+.-..|++++++..+++++...|+-.. ...+..++... +....+...+...
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~-g~~~~Al~~l~~a 142 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKRA-GRHWDELRAMTQA 142 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 3456777777889999999999998887666555 77777777643 6677777777543
No 24
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=65.21 E-value=12 Score=26.30 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.5
Q ss_pred CcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 025044 168 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 207 (258)
Q Consensus 168 ~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 207 (258)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888889999999886 79999999999998887 5444
No 25
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=64.63 E-value=1.5e+02 Score=31.24 Aligned_cols=126 Identities=22% Similarity=0.359 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHH---HhccCCCCCCCccceeheeeccccccchhcccc-chhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025044 92 AELSKISTDIMQVI---DEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKT-GDERKDVADLSMKAYQAASTTAEAELSPT 167 (258)
Q Consensus 92 ~EL~~~C~eii~li---d~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 167 (258)
+|..++...++++. ..+|.|. -+++-|=-|-..|--.+ .++|...-.++.++|++|.+ +.|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~---------~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~ 476 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPR---------GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPT 476 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhh---------HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCC
Confidence 56666666666533 1222222 24566766766665544 45777788999999999874 5689
Q ss_pred CcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH------------------------HHHhhc----cCC--------
Q 025044 168 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE------------------------AISELD----TLS-------- 211 (258)
Q Consensus 168 ~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~------------------------Ai~~ld----~l~-------- 211 (258)
|| -...+.|++|-+ .++.+.|...++.++.- |+.-+| +-.
T Consensus 477 dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DP---LVIFYLALQYAE-QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred Cc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 99 234555555444 58888888887777554 222111 111
Q ss_pred ----cccHHhHHHHHHHHHhhHhhhhcC
Q 025044 212 ----EESYKDSTLIMQLLRDNLTLWTSD 235 (258)
Q Consensus 212 ----ee~y~ds~~ilqLLrdNl~lW~~e 235 (258)
+-.+.|....+.+.+--|.+|..+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhh
Confidence 123667777788888888899853
No 26
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=61.82 E-value=31 Score=30.04 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 35 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 35 ~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
-|+||.|-|.=|..-.|.+.-..|.|.|.+..=. +...+...+-...-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda-~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDA-NDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999884311 0111101011113356666788888888888888888754
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=58.59 E-value=1.5e+02 Score=27.12 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=11.5
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhh
Q 025044 10 YIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
.++.+..+.|+|+.+..+++++.+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHc
Confidence 334444444555555555555443
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=58.42 E-value=2.2e+02 Score=29.66 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHh
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIE 68 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ie 68 (258)
+..+|.+..+.|++++++..+++++...|. +.+-...+..++.. -+..-.+.+.+..+.
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~-~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRN-NRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-CCChHHHHHHHHhCC
Confidence 677899999999999999999999988777 44444556666653 244444666665433
No 29
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.33 E-value=25 Score=18.42 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
+..+|.+..+.++|++++.++.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 35678888889999999999998886554
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=57.33 E-value=57 Score=22.03 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNV 53 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~ 53 (258)
.+..+|.+.-+.|+|++++.++++.++.+|. +..=..-++.+|...
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~ 50 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKL 50 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 4567889999999999999999999998766 344444444444443
No 31
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=57.17 E-value=49 Score=27.74 Aligned_cols=74 Identities=22% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 35 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 35 ~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
-|.+|.|-|.-|....|......|.++|.+..-..+.- +........-++-..+++++|..+-+..+.-||..+
T Consensus 84 iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 84 IPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp --SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999865222211 100000002345556677777777777777776543
No 32
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=56.75 E-value=11 Score=23.12 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHH
Q 025044 152 AYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACH 194 (258)
Q Consensus 152 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~ 194 (258)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36666643 45555 456788888876 599999863
No 33
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=55.71 E-value=58 Score=29.84 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|+.|.|-|.-|+...+.+....|.|+|-+..=.-+...+.... .-.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999999999999864222222111110 2245556888888888888888888765
No 34
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=55.24 E-value=61 Score=21.71 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025044 10 YIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRIL 64 (258)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l 64 (258)
-+|...-+.|+|++++..+++++...|. +.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4678888999999999999999987755 5555566666554 334444444444
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=54.83 E-value=1e+02 Score=24.98 Aligned_cols=68 Identities=16% Similarity=0.044 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHH------HhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTL 220 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~y------Ei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ 220 (258)
+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|.....+|+.---. .-.++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHHH
Confidence 5688889888855 3333 233444455544 2478888888777766533222 22344555665555
Q ss_pred HHH
Q 025044 221 IMQ 223 (258)
Q Consensus 221 ilq 223 (258)
-|.
T Consensus 160 ~~~ 162 (168)
T CHL00033 160 WLK 162 (168)
T ss_pred HHH
Confidence 443
No 36
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=54.38 E-value=24 Score=21.54 Aligned_cols=26 Identities=8% Similarity=0.290 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhh
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
+..+|.+..+.|+|+.++++.++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=52.93 E-value=82 Score=26.65 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccc--HHhHHH
Q 025044 143 KDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEES--YKDSTL 220 (258)
Q Consensus 143 ~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~--y~ds~~ 220 (258)
..--+.|..+|..|..+ .|.||- ...|.++-+.- +|+++.|+ ++|+.||.-....++.. ..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L-----~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQI-----KIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 33457788888888754 455553 13444554444 68887764 68888888776554432 223566
Q ss_pred HHHHHHh
Q 025044 221 IMQLLRD 227 (258)
Q Consensus 221 ilqLLrd 227 (258)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 6666654
No 38
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.12 E-value=1.2e+02 Score=28.06 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhcC----------CCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccH
Q 025044 146 ADLSMKAYQAASTTAEAEL----------SPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESY 215 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L----------~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y 215 (258)
+......|.+++....... +.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 4566777777777664322 23355788899999999999 599999999999887776633333332221
Q ss_pred HhHHHHHHHHHhhHhhhhcCCCCCCCchhhh
Q 025044 216 KDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 246 (258)
Q Consensus 216 ~ds~~ilqLLrdNl~lW~~e~~~~~~~~~~~ 246 (258)
. +.++.=-.-|.++.+--|...+.|
T Consensus 197 ~------~~~~~fe~FWeS~vpRiGE~gA~G 221 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIGEPGAKG 221 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCCCCCcch
Confidence 1 444555589999877555554443
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=51.59 E-value=37 Score=22.86 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=27.1
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 5 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 5 re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
.+-+..++.+..+.|+|++++.++++++...|.
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455678999999999999999999999877653
No 40
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.33 E-value=93 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
.++-+|--+++.|||.+++.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455677778888999999977766654
No 41
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=51.27 E-value=51 Score=28.23 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 35 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 35 ~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
-|+||.|-|.=|....|...-..|.++|.+..=-.+. .+........-++-.++++++|..+.++.+.-||..+
T Consensus 93 iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 93 FPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999884311100 0000000001234555666777777777666666544
No 42
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=50.89 E-value=72 Score=21.40 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 199 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~a 199 (258)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..+.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4566677766543 34445555566677777 59999988876653
No 43
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=49.07 E-value=51 Score=28.23 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|++|.|-|.=|....|...-..|.+.|.+..--.+. .+........-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~-lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDK-IKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999884311111 0000000001234445566667777666666666543
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=48.90 E-value=1.4e+02 Score=23.99 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRIL 64 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l 64 (258)
-+..++.+.-..|+|+.++..+++++...|. +..-...++..|-.. +....+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3566788888899999999999999876554 334444555555433 3344444444
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=48.08 E-value=4.1e+02 Score=29.11 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhh
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 70 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk 70 (258)
.+.+|++.-..|+|++++..+++++..+|+-..--...+.... ...+..-.+.+.+..+.+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHh
Confidence 5788899999999999999999998765543211111111111 1234455566666654443
No 46
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=48.05 E-value=17 Score=38.94 Aligned_cols=76 Identities=16% Similarity=0.006 Sum_probs=48.7
Q ss_pred Cccceeheeecccccc------chhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCCh
Q 025044 116 GESTVFYYKMKGDYYR------YLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSP 189 (258)
Q Consensus 116 ~eskVfy~KmkgDyyR------YlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~ 189 (258)
.....||++..|||+. .+|++-.. -.-.++|..+|++++++ .|.||. +||+=-|+|.-. +.
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk---~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL 165 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAK---LNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DK 165 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHH---cCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hH
Confidence 3444566666666553 33443221 11246788999988754 377774 666666666666 99
Q ss_pred HHHHHHHHHHHHHHH
Q 025044 190 ERACHLAKQAFDEAI 204 (258)
Q Consensus 190 ~~A~~iak~afd~Ai 204 (258)
++|..++++|+.--+
T Consensus 166 ~KA~~m~~KAV~~~i 180 (906)
T PRK14720 166 EKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999976643
No 47
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=48.02 E-value=62 Score=27.97 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|+||.|-|.=|....|...-.-|.+.|.+..--.+. .+........-++-.++.++||..+.+..+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDK-LKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999885311111 0000000001234445666667777666666666543
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=47.77 E-value=70 Score=26.05 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+. |.++.......|.++.+.. +|+.++|+...++|+.
T Consensus 52 ~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 52 AEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 56888888888663 2333333355666655444 7999999999888774
No 49
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=47.27 E-value=41 Score=23.05 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
+.|..+++.++.+ +|-...+-++++.+++. +|+.++|.....++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3445555554433 45556667778888777 699999988777666
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=46.43 E-value=4.1e+02 Score=29.12 Aligned_cols=55 Identities=11% Similarity=-0.103 Sum_probs=35.5
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 10 YIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
.++.++-..|+|++++.++++++...|.-. .=...|..+|.. .+....|.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345666678999999999999998876532 233445555533 3555556555544
No 51
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=44.58 E-value=29 Score=28.07 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhc
Q 025044 182 YYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (258)
Q Consensus 182 ~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~ 234 (258)
|-++......+.++=..+|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 44455555556666677788888777665544222335777999999999996
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=41.78 E-value=2.2e+02 Score=24.13 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHhhhhhhhhHHHHHHHhH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVEL--TVEERNLLSVGYKNVIGARRASWRILSSI 67 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L--s~eERnLlsvAyKn~i~~~R~s~R~l~~i 67 (258)
+.++.++...-+.|+|++++..+.+++...|.- ..+-+..+..+|-.. +....|...+..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~ 96 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRF 96 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 346677788888999999999999999877653 334445555555443 5556666666543
No 53
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.25 E-value=46 Score=31.45 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=65.8
Q ss_pred cceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhc-CCCCC------------cchHHHhhhHHHHHHH
Q 025044 118 STVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAE-LSPTH------------PIRLGLALNFSVFYYE 184 (258)
Q Consensus 118 skVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~-L~pt~------------pirLgL~LN~SVF~yE 184 (258)
-++-+-+.+-|+.+|..++..-..+. ...+.|.+-..+-+-. ||... .+++.|.---+-.|-+
T Consensus 216 Ykld~~~~k~Dv~e~es~~rqi~~in----ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle 291 (361)
T COG3947 216 YKLDAGLPKYDVQEYESLARQIEAIN----LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLE 291 (361)
T ss_pred eEEecCCccccHHHHHHHhhhhhccc----cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667889999998876433221 2233333333333211 21111 1222222222333344
Q ss_pred hhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhc
Q 025044 185 IMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (258)
Q Consensus 185 i~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~ 234 (258)
.|.+.+|+++.+.++ .++.|+|+.++.-+.++-+++||+..=.+
T Consensus 292 -~g~~neAi~l~qr~l-----tldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 292 -AGKPNEAIQLHQRAL-----TLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred -cCChHHHHHHHHHHh-----hcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 699999999999876 47889999999999999999999986554
No 54
>COG4499 Predicted membrane protein [Function unknown]
Probab=40.18 E-value=56 Score=31.73 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=39.3
Q ss_pred HHHhhhHHHHHHHhhCChHHHHHHHHHH-----HHHHHHhhccCCcccHHh
Q 025044 172 LGLALNFSVFYYEIMNSPERACHLAKQA-----FDEAISELDTLSEESYKD 217 (258)
Q Consensus 172 LgL~LN~SVF~yEi~~~~~~A~~iak~a-----fd~Ai~~ld~l~ee~y~d 217 (258)
|-|+|=|++|+|-+.--.+.||.-|.+| +++.|..|+.++.++.+.
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPk 281 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPK 281 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcH
Confidence 4467899999999999999999999999 588999999888776444
No 55
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=39.06 E-value=1.4e+02 Score=21.22 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
.++-.|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566667888999999999988875
No 56
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=39.04 E-value=1.2e+02 Score=22.21 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|+.+.. +.|.||......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777763 346766555555555555554 79999999887776655
No 57
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=38.81 E-value=48 Score=23.70 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=5.6
Q ss_pred hCChHHHHHHHH
Q 025044 186 MNSPERACHLAK 197 (258)
Q Consensus 186 ~~~~~~A~~iak 197 (258)
+|+.++|+..-+
T Consensus 71 l~~y~eAi~~l~ 82 (84)
T PF12895_consen 71 LGKYEEAIKALE 82 (84)
T ss_dssp TT-HHHHHHHHH
T ss_pred hCCHHHHHHHHh
Confidence 455555555433
No 58
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=38.44 E-value=1.3e+02 Score=24.68 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 568888888887642 222223345666666555 79999999988777663
No 59
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=37.49 E-value=44 Score=22.51 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=38.6
Q ss_pred HhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhh
Q 025044 17 QAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE 71 (258)
Q Consensus 17 qaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~ 71 (258)
+.|+|++++..+++++...|. +.+=+-.|..+|-.. +..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 468889999999998888777 667677777777655 67777777777655544
No 60
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=36.84 E-value=40 Score=27.05 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=41.5
Q ss_pred HHHhhCChH-HHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhc
Q 025044 182 YYEIMNSPE-RACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (258)
Q Consensus 182 ~yEi~~~~~-~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~ 234 (258)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7777888899999988876655544 677888999999999995
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=36.77 E-value=3.6e+02 Score=25.25 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..+|.+..+.|+|++++..+.+++..+|.. ..=...+..+|-. .+....|.+.+..
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45677788888888888888888888876653 3345555666554 4666667766654
No 62
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=36.43 E-value=1.7e+02 Score=23.26 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 6799999999752 344 4555555566555544 589999999999887654
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=36.43 E-value=5.8e+02 Score=27.89 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh--hHHHHHHHhHhhhhhhhcchhHHHHHHH
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGAR--RASWRILSSIEQKEEARGNELNVKRIKE 85 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~--R~s~R~l~~ieqk~~~~~~~~~~~~i~~ 85 (258)
|+=.|+|+-+=++|--++.+.|.++-.+|..-.+-|-....+|=+.-.+. +.||--...+.+ ..-...-.+-.
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-----~~v~alv~L~~ 241 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-----TCVSALVALGE 241 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-----hhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHh--c
Q 025044 86 YRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEA--E 163 (258)
Q Consensus 86 yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~--~ 163 (258)
++..-.+. ++|..|+.+-.. .
T Consensus 242 ~~l~~~d~---------------------------------------------------------~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 242 VDLNFNDS---------------------------------------------------------DSYKKGVQLLQRAYK 264 (1018)
T ss_pred HHHHccch---------------------------------------------------------HHHHHHHHHHHHHHh
Q ss_pred CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHh
Q 025044 164 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISE 206 (258)
Q Consensus 164 L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ 206 (258)
..|.||.-|...-||=+| .++.+.++.+|-.||..+...
T Consensus 265 ~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred hcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
No 64
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=36.26 E-value=63 Score=22.04 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
+..+|.+..+.|+|.+.+..+.++++..|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566666667777777777777665544
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=35.06 E-value=69 Score=25.78 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.+.|..+|+.|+. +.|.||-- ..|.++- +.-+|++++|+.....|+.
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~a---~~~lg~~-l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPEP---VYQTGVC-LKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcHH---HHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 4668888888874 45555521 1222222 3347999999887666654
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=34.47 E-value=3.4e+02 Score=24.33 Aligned_cols=34 Identities=15% Similarity=-0.006 Sum_probs=25.7
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 4 DRENFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 4 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
.++-....|-++-..|+++.+..++.++++..|.
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4666677778888888888888888888776543
No 67
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=32.28 E-value=7e+02 Score=27.22 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=13.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHh
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVA 32 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i 32 (258)
+.+|.+..+.|+|++++...++++
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh
Confidence 344555555666666666665544
No 68
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.14 E-value=62 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh
Q 025044 22 DEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGA 56 (258)
Q Consensus 22 ~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~ 56 (258)
...++..+++++...+||.+|++.|..+...++-.
T Consensus 82 ~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 82 ENALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 35567778888888999999999999999988653
No 69
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=32.12 E-value=1.5e+02 Score=26.82 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred hCChHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcc-hhHHHHHHHHHHHHH-HHH
Q 025044 18 AERYDEMVDAMKKVA-NLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGN-ELNVKRIKEYRQKVE-AEL 94 (258)
Q Consensus 18 aeRy~Dm~~~mk~~i-~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~-~~~~~~i~~yk~kie-~EL 94 (258)
-+-.++..++|+..+ +..++|+.+|-|++-..+-..-+. .+....+ ..++ +..++.....-+|+. -++
T Consensus 78 i~sPe~l~~ll~~yi~s~~~dl~~~EL~~~~~k~~~~~dt-------~~f~~~~--~~~n~P~~Iq~~~~~~kK~vf~~~ 148 (271)
T KOG3089|consen 78 IGSPEDLQKLLKDYISSRRLDLELEELNLPDSKFLKANDT-------THFLSSY--LKGNCPKWIQLRKNHSKKKVFVLM 148 (271)
T ss_pred CCChHHHHHHHHHHHHhhcCcchhhhhcchHHHHHhhhhh-------hhhchHh--hhcccHHHHHhccCCchhhhhHHH
Confidence 478999999999999 568999999999987766554332 1111111 1233 455565555555555 888
Q ss_pred HHHHHHHHHHHH
Q 025044 95 SKISTDIMQVID 106 (258)
Q Consensus 95 ~~~C~eii~lid 106 (258)
.-+|-++++.|+
T Consensus 149 lI~c~sa~Ral~ 160 (271)
T KOG3089|consen 149 LIICSSAVRALE 160 (271)
T ss_pred HHHHHHHHHHHh
Confidence 889999999998
No 70
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=31.98 E-value=2e+02 Score=20.86 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDV--ELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~--~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
+.-.+....+.|+|++++..+.+++...| .+..+-+..+..+|-.. +....+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 64 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 44556666667777777777777776544 33444444555554332 233334444443
No 71
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.63 E-value=48 Score=21.20 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=26.6
Q ss_pred ccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025044 128 DYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPT 167 (258)
Q Consensus 128 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 167 (258)
|.|--++|+.-..++- +.|..=|++|+++=++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4555667776655543 678888999999988777763
No 72
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=31.02 E-value=68 Score=28.35 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHH
Q 025044 10 YIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQK 89 (258)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~k 89 (258)
.+|.|+...+++++++.+..+++..++.-...-.+|... + .-+....+.+++...-++.. ........+.-|..
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~~~- 122 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--QDGDPEEALKLAEKAYERDG--DPRYLLSALQLYYR- 122 (280)
T ss_dssp --------------------------------------------------------------------------H-HHH-
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c--cccccccccccccccccccc--ccchhhHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 025044 90 VEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHP 169 (258)
Q Consensus 90 ie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p 169 (258)
..-..++.++|+... .....+.-.+|+-+.|.+|.-.-+ .++|..+|++|+.+. |.||
T Consensus 123 -----~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~----------~~~A~~~~~~al~~~-----P~~~ 180 (280)
T PF13429_consen 123 -----LGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGD----------PDKALRDYRKALELD-----PDDP 180 (280)
T ss_dssp -----TT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHH------TT-H
T ss_pred -----HhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-----CCCH
Q ss_pred chHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 170 IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 170 irLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
- +++.-++.+--.|+.++|..+.+..-..+
T Consensus 181 ~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 181 D----ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp H----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred H----HHHHHHHHHHHCCChHHHHHHHHHHHHHC
No 73
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=30.73 E-value=1.5e+02 Score=27.84 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=6.7
Q ss_pred hCChHHHHHHHHH
Q 025044 186 MNSPERACHLAKQ 198 (258)
Q Consensus 186 ~~~~~~A~~iak~ 198 (258)
+|+.+.|+...++
T Consensus 83 lg~~~eA~~~~~~ 95 (356)
T PLN03088 83 LEEYQTAKAALEK 95 (356)
T ss_pred hCCHHHHHHHHHH
Confidence 4666655554333
No 74
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=30.69 E-value=1.7e+02 Score=25.53 Aligned_cols=79 Identities=28% Similarity=0.389 Sum_probs=44.7
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCc---chHHHhhhHHHHHHHhhCChHHHH---HHHHHHHHHHHHh
Q 025044 133 LAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHP---IRLGLALNFSVFYYEIMNSPERAC---HLAKQAFDEAISE 206 (258)
Q Consensus 133 laE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---irLgL~LN~SVF~yEi~~~~~~A~---~iak~afd~Ai~~ 206 (258)
++-|..+.+.++.++.|..-|++|+.+- |..+ .-||.|+--=-|+ ..+..+|- +.|...|+.|...
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHhc
Confidence 3446677777778888888888888663 3332 4567666555553 34454554 4566668888743
Q ss_pred hccCCcccHHhHHHH
Q 025044 207 LDTLSEESYKDSTLI 221 (258)
Q Consensus 207 ld~l~ee~y~ds~~i 221 (258)
+ -+.+.|+-+..+
T Consensus 110 -~-P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 -D-PNNELYRKSLEM 122 (186)
T ss_dssp ---TT-HHHHHHHHH
T ss_pred -C-CCcHHHHHHHHH
Confidence 1 233557655433
No 75
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.63 E-value=1.6e+02 Score=30.84 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchH-HHhhhHHHHHHHhhC
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRL-GLALNFSVFYYEIMN 187 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirL-gL~LN~SVF~yEi~~ 187 (258)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 467899999999999999999998777 457898888888644
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=27.28 E-value=1.3e+02 Score=27.27 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEER 43 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eER 43 (258)
+-+.+++++..+.|++++++.+.++++..+|.=..|-|
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34678999999999999999999999987764333333
No 77
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=26.61 E-value=3.4e+02 Score=21.85 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhc----------C-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhh-h
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANL----------D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEA-R 74 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~----------~-~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~-~ 74 (258)
..+-.|+..-..|.|+-++.+-.|.++. + ++-|+.=+.||....+. +.....-++.+..++..--. .
T Consensus 15 ~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~sr 93 (132)
T COG2250 15 RDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILSR 93 (132)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHhc
Confidence 3455677777889999999887777642 3 67788888899988874 44333334444333333111 1
Q ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 75 GNE-LNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 75 ~~~-~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
-.+ ........|-+...+++......|++++...+
T Consensus 94 Y~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 94 YPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred CccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 011 01113466888888899999999999998654
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=26.34 E-value=1e+02 Score=29.58 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIG 55 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~ 55 (258)
|.+.+|.-+-|.|+-+|+....+.+.++++..|--..|..||..+=.
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 56788888999999999999999999999999999999999987643
No 79
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=26.19 E-value=7.1e+02 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVEL 38 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L 38 (258)
+..++.+.-+.|++++++..+++++..+|..
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4566777777777777777777777665553
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=26.14 E-value=1.3e+02 Score=21.37 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=10.0
Q ss_pred HHHHHHHhCChHHHHHHHH
Q 025044 11 IAKLAEQAERYDEMVDAMK 29 (258)
Q Consensus 11 ~AklaeqaeRy~Dm~~~mk 29 (258)
+|+...+.|+|++++++++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHh
Confidence 3555555555555555554
No 81
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=25.18 E-value=2.4e+02 Score=25.70 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=86.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHH
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQ 88 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ 88 (258)
..++.+..+.+++++++.+++++++..|.. .+=..++..+|-. .+....|...+..+..............+..-|..
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQC-VRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 346777778999999999999998876653 3445556666544 46666777777654433211000111222222322
Q ss_pred H-HHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025044 89 K-VEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPT 167 (258)
Q Consensus 89 k-ie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 167 (258)
. =.++-....+.++.+ -|.. .++ -..|..+ .... -.+.|...|++++.. .|.
T Consensus 262 ~g~~~~A~~~l~~~~~~-----~p~~-----~~~--~~la~~~-------~~~g---~~~~A~~~l~~~l~~-----~P~ 314 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE-----YPGA-----DLL--LALAQLL-------EEQE---GPEAAQALLREQLRR-----HPS 314 (389)
T ss_pred cCCHHHHHHHHHHHHHh-----CCCc-----hHH--HHHHHHH-------HHhC---CHHHHHHHHHHHHHh-----CcC
Confidence 1 122233334444332 3431 121 1222221 1111 135678888887654 344
Q ss_pred CcchHHHhhhHHHHHHHh-hCChHHHHHHHHHHHHHHHH
Q 025044 168 HPIRLGLALNFSVFYYEI-MNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 168 ~pirLgL~LN~SVF~yEi-~~~~~~A~~iak~afd~Ai~ 205 (258)
++. +-.-+..+...- .|+..+|+.+.++.+...+.
T Consensus 315 ~~~---~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 315 LRG---FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHH---HHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 442 221233333221 45888999999998887764
No 82
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=24.69 E-value=2.6e+02 Score=19.78 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
+++..|--.+++|+|++++.+.++.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566667788999999988888774
No 83
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=24.21 E-value=5.2e+02 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLD 35 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~ 35 (258)
.-.+..|+++-.+|+|+=+..++.++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 346789999999999999999998887543
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=24.14 E-value=3.9e+02 Score=21.67 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTT 159 (258)
Q Consensus 147 ~~a~~aY~~A~~~ 159 (258)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 6688888888865
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.69 E-value=1.2e+02 Score=24.45 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRIL 64 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l 64 (258)
-+..++.+..+.|+|++++.++.+++..+|. +.+-..-+.+++... +....|...+
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~-g~~~eAi~~~ 115 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMM-GEPGLAREAF 115 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3445666666666666666666666655442 333344444444432 4444443333
No 86
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.68 E-value=2.8e+02 Score=19.84 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
.++-.|--.+++|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666777889999999999998885
No 87
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.46 E-value=2.8e+02 Score=19.75 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 23 EMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 23 Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
....-+...+..-+.++.++|+-...-....+..-..-+..+.
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe 45 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQME 45 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433455557888777777777777666666553
No 88
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=23.41 E-value=5.4e+02 Score=23.01 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHH-HhhhHHHHHHHhhCChHHHHHHHHHHHHHHH--HhhccCCcccHHhHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--SELDTLSEESYKDSTLIM 222 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yEi~~~~~~A~~iak~afd~Ai--~~ld~l~ee~y~ds~~il 222 (258)
.+.|.-.|.+|-.+.. .++|....+|. +.+|+.+-.+.--++.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3668888999888875 78999999998 7889999999964499999999999988632 233333333222245677
Q ss_pred HHHHhhHhhhhcC
Q 025044 223 QLLRDNLTLWTSD 235 (258)
Q Consensus 223 qLLrdNl~lW~~e 235 (258)
++|-..+-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7787777777653
No 89
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=23.28 E-value=1.8e+02 Score=24.12 Aligned_cols=63 Identities=29% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHH-HHHHHhhCC---hHHHHHHHHHHHHHHHHhhcc
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFS-VFYYEIMNS---PERACHLAKQAFDEAISELDT 209 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~S-VF~yEi~~~---~~~A~~iak~afd~Ai~~ld~ 209 (258)
.....+|-+++.-.+..++...|+.+...|.+. ||..+--.+ .+..-.....++++|+..+..
T Consensus 81 ~~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 81 EELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777766666778888899999999886 444122112 223457788999999988753
No 90
>PHA02103 hypothetical protein
Probab=23.27 E-value=24 Score=28.15 Aligned_cols=14 Identities=50% Similarity=0.890 Sum_probs=11.2
Q ss_pred ccccccchhccccc
Q 025044 126 KGDYYRYLAEFKTG 139 (258)
Q Consensus 126 kgDyyRYlaE~~~~ 139 (258)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 56999999986655
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=23.04 E-value=5.5e+02 Score=22.97 Aligned_cols=59 Identities=14% Similarity=-0.003 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLD-VELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~-~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
-+.++|.+....+++++.......+.... ..+|.-|+..+....-...+..-.+...+.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~ 67 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLE 67 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35678888888999999888887777554 467777776654333333344444544443
No 92
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=22.86 E-value=98 Score=27.10 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
-+.|.++|++|..- . ..| ..++...+|+.|||..||.
T Consensus 15 Ye~A~~~Ye~av~n---g---~~~--------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 15 YETARQAYEEAVAN---G---SSP--------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHC---T-----H--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---C---CCH--------------HHHHHHHHHHhHHHHHHhH
Confidence 47899999999751 1 112 1246778999999999986
No 93
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=22.82 E-value=3.4e+02 Score=20.49 Aligned_cols=57 Identities=18% Similarity=0.084 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRIL 64 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l 64 (258)
+.++.+|..+-+.|+|+++...+++++..+|. +.+-+..+..+|-.. +....+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 74 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQML-KEYEEAIDAY 74 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44667888888889999999999988887665 445555555554332 3333444433
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=22.62 E-value=2.4e+02 Score=24.05 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCC--hHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNS--PERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~--~~~A~~iak~afd~ 202 (258)
+.|..+|++|+.+ .|.+| .+.++++.-+|...|+ .++|..+..+++..
T Consensus 90 ~~A~~a~~~Al~l-----~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~ 139 (198)
T PRK10370 90 DNALLAYRQALQL-----RGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALAL 139 (198)
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 5577788777643 33333 3345555544444555 46777666666443
No 95
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=22.35 E-value=1.4e+02 Score=22.47 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHH----HhhhHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLG----LALNFSVFY 182 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLg----L~LN~SVF~ 182 (258)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~R 58 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYR 58 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444555556665443 58999999998 566777763
No 96
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=22.17 E-value=2.8e+02 Score=25.33 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=44.0
Q ss_pred HHHHHHHHHh--cCCCCCc------chHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccH-HhHHHHHH
Q 025044 153 YQAASTTAEA--ELSPTHP------IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESY-KDSTLIMQ 223 (258)
Q Consensus 153 Y~~A~~~a~~--~L~pt~p------irLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y-~ds~~ilq 223 (258)
|..|+..+.. .+-|+|| --.||+ +|.-..++.+=-.-+++||++.-.-+...+.+.| .|+..-|.
T Consensus 87 y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~ 160 (254)
T COG4105 87 YDLALAYIDRFIRLYPTHPNADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV 160 (254)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 4556666643 6889999 234555 4444455554444445555544444455566665 47999999
Q ss_pred HHHhhHh
Q 025044 224 LLRDNLT 230 (258)
Q Consensus 224 LLrdNl~ 230 (258)
.++|-|.
T Consensus 161 ~~~d~LA 167 (254)
T COG4105 161 KLNDALA 167 (254)
T ss_pred HHHHHHH
Confidence 9998764
No 97
>PRK15331 chaperone protein SicA; Provisional
Probab=22.05 E-value=3.8e+02 Score=22.89 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLL 225 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLL 225 (258)
-++|..+|--|.-+... .|.-|.+.| -.|=.+|++.+|.. +|.-|+..-. ...-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 35666666666655532 333344544 34556789888876 7887776321 111233366666666
Q ss_pred HhhHh
Q 025044 226 RDNLT 230 (258)
Q Consensus 226 rdNl~ 230 (258)
..|.+
T Consensus 152 ~~~~~ 156 (165)
T PRK15331 152 KTAET 156 (165)
T ss_pred Hcccc
Confidence 66543
No 98
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.96 E-value=2.1e+02 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYE 184 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yE 184 (258)
.-....||+|+++=+. .-.++|-.+||-.+.+..||.
T Consensus 161 hYmR~HYQeAIdvYkr-vL~dn~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 161 HYMRMHYQEAIDVYKR-VLQDNPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHHHHHHHHH-HHhcChhhhhhHHHHHHHHHh
Confidence 3456789999999865 445889999999999988775
No 99
>PRK11820 hypothetical protein; Provisional
Probab=21.29 E-value=2.4e+02 Score=26.08 Aligned_cols=61 Identities=25% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccC
Q 025044 150 MKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTL 210 (258)
Q Consensus 150 ~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l 210 (258)
..+|-+++.-....++...|+.|.-.|.+.--..+--.+.+..-.....|++.|+..+...
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~~~~~~~~~~~~~l~~al~~AL~~l~~~ 145 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLEAEEEDLEALWAALLAALDEALDDLIEM 145 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666644445665445999998888753222223355666678889999999888654
No 100
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.72 E-value=92 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHHHHhCChHHHHHHHHHHhh
Q 025044 11 IAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 11 ~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
...-.=|.|+|+++.+|+++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344578999999999999875
No 101
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.72 E-value=7.1e+02 Score=23.42 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred chHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHH----------HHHHHHhhhhhhhhHHHHHHHhHhhhhh
Q 025044 3 KDRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERN----------LLSVGYKNVIGARRASWRILSSIEQKEE 72 (258)
Q Consensus 3 ~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERn----------LlsvAyKn~i~~~R~s~R~l~~ieqk~~ 72 (258)
....-+-.++.+.-+.|+|+.+++.+.++.....- +++++. +-..+-..-.......|+.+..-..+.
T Consensus 185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~- 262 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ- 262 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC-
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheee-ccc--------------------ccc
Q 025044 73 ARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKM-KGD--------------------YYR 131 (258)
Q Consensus 73 ~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~Km-kgD--------------------yyR 131 (258)
..-...+...+.. ..-......++.+.+- ...+++...+|-.+ .|| .+.
T Consensus 263 ---~~~~~~~A~~l~~------~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 263 ---VALQVAMAEHLIE------CDDHDTAQQIILDGLK-RQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred ---HHHHHHHHHHHHH------CCCHHHHHHHHHHHHh-cCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHH
Q ss_pred chhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 025044 132 YLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 207 (258)
Q Consensus 132 YlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 207 (258)
.++.+.....+- .+|...|+.++.. .|+++..+-|+.= ++-.|++++|+++-++++.-+...+
T Consensus 333 ~lgrl~~~~~~~---~~A~~~le~al~~-----~P~~~~~~~La~~-----~~~~g~~~~A~~~~~~~l~~~~~~~ 395 (398)
T PRK10747 333 TLGQLLMKHGEW---QEASLAFRAALKQ-----RPDAYDYAWLADA-----LDRLHKPEEAAAMRRDGLMLTLQNN 395 (398)
T ss_pred HHHHHHHHCCCH---HHHHHHHHHHHhc-----CCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHhhhcccC
No 102
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=20.46 E-value=1.1e+02 Score=24.34 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhc
Q 025044 187 NSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (258)
Q Consensus 187 ~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~ 234 (258)
.....+.++=..+|..+...|....+..-. +..-+.-|..|..+|+.
T Consensus 11 ~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 11 QSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTI 57 (113)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 333344455556677777776655422212 22323999999999996
No 103
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=20.36 E-value=4.5e+02 Score=20.99 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025044 38 LTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIM 102 (258)
Q Consensus 38 Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii 102 (258)
||.+|-|-+--..+.++...+...+.+..+...-............+...+.+..++...+++|-
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 67 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIE 67 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888877654432111111223344444555666666655553
No 104
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.33 E-value=1.1e+02 Score=30.91 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHH------HHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFY------YEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~------yEi~~~~~~A~~iak~afd 201 (258)
+.|.++|.+|++++-.+ +||| |+-+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 105
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=20.06 E-value=2.9e+02 Score=20.21 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
+++-.|--.+++|+|++++.+-.+-++
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 567777888899999999988877764
No 106
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.03 E-value=1.3e+02 Score=27.42 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
.+.|.+.|++|+.++. -+ =-+--||.-|++.- |.+++|...-.+|.
T Consensus 85 ~~~A~e~YrkAlsl~p-----~~---GdVLNNYG~FLC~q-g~~~eA~q~F~~Al 130 (250)
T COG3063 85 NDLADESYRKALSLAP-----NN---GDVLNNYGAFLCAQ-GRPEEAMQQFERAL 130 (250)
T ss_pred hhhHHHHHHHHHhcCC-----Cc---cchhhhhhHHHHhC-CChHHHHHHHHHHH
Confidence 4678999999986652 22 22456899999996 69999877655543
Done!