Query 025044
Match_columns 258
No_of_seqs 125 out of 435
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uzd_A 14-3-3 protein gamma; s 100.0 1.8E-98 6E-103 667.6 22.0 239 1-240 1-241 (248)
2 3iqu_A 14-3-3 protein sigma; s 100.0 2.2E-97 8E-102 656.8 19.8 230 4-233 7-236 (236)
3 3ubw_A 14-3-3E, 14-3-3 protein 100.0 1.1E-96 4E-101 658.9 22.2 232 4-235 30-261 (261)
4 1o9d_A 14-3-3-like protein C; 100.0 4.9E-96 2E-100 656.7 21.9 242 2-243 5-248 (260)
5 2br9_A 14-3-3E, 14-3-3 protein 100.0 1.1E-94 3.9E-99 640.3 22.2 231 4-234 4-234 (234)
6 2npm_A 14-3-3 domain containin 100.0 9.8E-94 3.3E-98 641.4 22.1 232 3-235 26-260 (260)
7 3efz_A 14-3-3 protein; 14-3-3, 100.0 1.2E-90 4.3E-95 621.2 14.2 227 4-238 28-261 (268)
8 2o8p_A 14-3-3 domain containin 100.0 2.5E-82 8.5E-87 556.7 18.0 215 4-230 2-226 (227)
9 3vtx_A MAMA; tetratricopeptide 95.4 0.69 2.4E-05 35.9 15.6 162 6-201 6-169 (184)
10 3edt_B KLC 2, kinesin light ch 94.8 0.3 1E-05 39.7 10.9 59 146-205 143-201 (283)
11 3nf1_A KLC 1, kinesin light ch 94.7 1.5 5.1E-05 36.2 18.3 185 6-205 28-227 (311)
12 4g1t_A Interferon-induced prot 93.2 2.1 7.3E-05 38.2 14.3 49 147-200 351-399 (472)
13 3u4t_A TPR repeat-containing p 92.9 0.75 2.6E-05 37.6 9.9 54 147-201 196-249 (272)
14 3n71_A Histone lysine methyltr 92.6 0.61 2.1E-05 44.5 10.1 58 147-205 368-425 (490)
15 2qfc_A PLCR protein; TPR, HTH, 92.5 3.3 0.00011 35.0 13.9 55 147-203 172-226 (293)
16 3qwp_A SET and MYND domain-con 92.2 0.31 1.1E-05 45.6 7.4 58 147-205 346-403 (429)
17 3hym_B Cell division cycle pro 92.1 3.6 0.00012 34.1 13.4 46 146-200 252-297 (330)
18 3fp2_A TPR repeat-containing p 91.9 6.3 0.00022 35.4 15.7 49 146-203 444-492 (537)
19 4abn_A Tetratricopeptide repea 91.3 8.8 0.0003 35.3 16.5 171 7-201 104-286 (474)
20 4a1s_A PINS, partner of inscut 91.0 7.2 0.00025 33.8 19.4 190 6-204 49-254 (411)
21 3qww_A SET and MYND domain-con 91.0 0.48 1.7E-05 44.4 7.4 59 147-206 357-415 (433)
22 4i17_A Hypothetical protein; T 91.0 3.4 0.00012 33.1 11.7 60 6-66 8-67 (228)
23 1fch_A Peroxisomal targeting s 90.9 5.4 0.00018 33.9 13.5 57 7-65 100-156 (368)
24 3qww_A SET and MYND domain-con 90.9 0.46 1.6E-05 44.6 7.1 59 147-206 315-373 (433)
25 3ro2_A PINS homolog, G-protein 90.7 6.1 0.00021 32.3 13.7 55 147-204 200-254 (338)
26 3edt_B KLC 2, kinesin light ch 90.0 0.59 2E-05 37.9 6.2 56 147-203 102-157 (283)
27 3n71_A Histone lysine methyltr 90.0 0.59 2E-05 44.6 7.1 58 147-205 326-383 (490)
28 2q7f_A YRRB protein; TPR, prot 89.7 6.4 0.00022 31.1 13.5 57 7-65 59-115 (243)
29 3u3w_A Transcriptional activat 89.5 0.88 3E-05 38.7 7.2 58 146-205 171-228 (293)
30 3qky_A Outer membrane assembly 89.4 7.9 0.00027 31.7 15.3 64 5-69 15-80 (261)
31 3ulq_A Response regulator aspa 89.2 8.7 0.0003 33.4 13.8 175 10-204 108-295 (383)
32 4eqf_A PEX5-related protein; a 89.0 10 0.00034 32.4 16.4 59 6-66 66-124 (365)
33 3ro2_A PINS homolog, G-protein 88.7 8.8 0.0003 31.3 18.8 190 6-204 6-214 (338)
34 2xpi_A Anaphase-promoting comp 87.5 17 0.00057 33.2 15.9 47 146-201 532-578 (597)
35 2gw1_A Mitochondrial precursor 87.5 9.4 0.00032 33.9 13.0 55 146-201 205-265 (514)
36 3qwp_A SET and MYND domain-con 87.2 0.63 2.1E-05 43.5 5.0 58 147-205 304-361 (429)
37 4gcn_A Protein STI-1; structur 87.0 1.8 6.3E-05 32.2 6.8 49 146-203 24-72 (127)
38 3hym_B Cell division cycle pro 86.9 12 0.0004 30.8 14.6 56 146-202 209-265 (330)
39 3fp2_A TPR repeat-containing p 85.8 19 0.00065 32.2 15.7 55 147-201 212-271 (537)
40 3sf4_A G-protein-signaling mod 85.5 16 0.00055 31.1 16.9 54 147-203 204-257 (406)
41 3ulq_A Response regulator aspa 85.4 3.1 0.0001 36.4 8.4 70 120-203 103-173 (383)
42 4a1s_A PINS, partner of inscut 85.4 17 0.00059 31.3 15.2 55 147-204 240-294 (411)
43 2y4t_A DNAJ homolog subfamily 85.4 18 0.00062 31.5 14.9 56 9-66 147-202 (450)
44 3sf4_A G-protein-signaling mod 85.0 17 0.00058 30.9 19.7 190 6-204 10-218 (406)
45 4b4t_Q 26S proteasome regulato 84.8 19 0.00065 31.4 15.9 57 146-204 191-247 (434)
46 3uq3_A Heat shock protein STI1 84.2 14 0.00047 29.2 13.8 32 6-37 80-111 (258)
47 3ieg_A DNAJ homolog subfamily 84.1 17 0.00058 30.1 15.7 47 146-201 288-334 (359)
48 4gyw_A UDP-N-acetylglucosamine 83.9 18 0.00061 35.9 14.1 57 6-64 10-66 (723)
49 2ho1_A Type 4 fimbrial biogene 83.6 15 0.00052 29.2 13.0 166 6-201 38-203 (252)
50 2y4t_A DNAJ homolog subfamily 83.6 16 0.00054 32.0 12.3 58 7-66 179-236 (450)
51 2xpi_A Anaphase-promoting comp 82.6 29 0.00098 31.7 17.8 55 146-202 491-545 (597)
52 3rkv_A Putative peptidylprolyl 82.2 2.2 7.4E-05 32.6 5.4 54 147-201 28-91 (162)
53 3ieg_A DNAJ homolog subfamily 82.0 20 0.0007 29.6 15.4 167 9-202 124-301 (359)
54 3q15_A PSP28, response regulat 82.0 20 0.00067 31.2 12.3 29 9-37 105-133 (378)
55 2pl2_A Hypothetical conserved 81.1 20 0.00067 28.8 12.0 63 1-65 1-63 (217)
56 3nf1_A KLC 1, kinesin light ch 81.0 3.1 0.0001 34.2 6.2 58 146-204 127-184 (311)
57 1fch_A Peroxisomal targeting s 80.7 24 0.00084 29.6 17.3 58 6-65 65-122 (368)
58 1elr_A TPR2A-domain of HOP; HO 80.5 11 0.00036 26.3 8.3 53 147-201 55-107 (131)
59 3ro3_A PINS homolog, G-protein 80.3 5.9 0.0002 28.5 7.0 56 146-204 25-80 (164)
60 3cv0_A Peroxisome targeting si 80.0 23 0.00079 28.9 14.4 58 6-65 22-79 (327)
61 2vq2_A PILW, putative fimbrial 79.8 18 0.00063 27.7 14.3 167 7-202 10-176 (225)
62 3ro3_A PINS homolog, G-protein 79.4 8.4 0.00029 27.7 7.7 55 147-204 66-120 (164)
63 4eqf_A PEX5-related protein; a 79.4 28 0.00095 29.5 14.9 58 7-66 101-158 (365)
64 2gw1_A Mitochondrial precursor 79.2 33 0.0011 30.2 15.0 172 7-202 306-478 (514)
65 4gco_A Protein STI-1; structur 79.0 6 0.00021 29.3 6.8 46 147-201 30-75 (126)
66 1xnf_A Lipoprotein NLPI; TPR, 78.5 24 0.00081 28.2 13.1 49 148-201 195-243 (275)
67 3q15_A PSP28, response regulat 78.0 5 0.00017 35.1 7.0 73 119-204 100-172 (378)
68 3lf9_A 4E10_D0_1IS1A_001_C (T1 77.6 11 0.00036 29.5 7.7 85 19-109 11-103 (121)
69 3uq3_A Heat shock protein STI1 76.8 25 0.00086 27.6 16.0 57 6-65 6-62 (258)
70 3u4t_A TPR repeat-containing p 76.7 17 0.00059 29.1 9.5 59 6-66 4-62 (272)
71 4gcn_A Protein STI-1; structur 76.7 7.6 0.00026 28.7 6.8 52 147-200 59-110 (127)
72 2ifu_A Gamma-SNAP; membrane fu 75.6 23 0.0008 30.0 10.5 52 146-200 171-222 (307)
73 4g1t_A Interferon-induced prot 75.4 6.3 0.00021 35.0 6.9 53 147-200 68-121 (472)
74 2q7f_A YRRB protein; TPR, prot 75.3 18 0.0006 28.4 9.0 58 7-66 25-82 (243)
75 3gw4_A Uncharacterized protein 73.7 11 0.00038 28.8 7.3 55 147-203 83-137 (203)
76 2e2e_A Formate-dependent nitri 73.0 28 0.00095 26.3 10.9 46 147-201 98-143 (177)
77 2l6j_A TPR repeat-containing p 72.9 12 0.00041 25.6 6.6 45 147-200 21-65 (111)
78 2ho1_A Type 4 fimbrial biogene 72.6 34 0.0011 27.1 15.0 60 7-68 73-132 (252)
79 2qfc_A PLCR protein; TPR, HTH, 72.4 15 0.00052 30.8 8.4 190 6-216 76-276 (293)
80 2yhc_A BAMD, UPF0169 lipoprote 71.8 36 0.0012 27.1 15.8 59 7-66 6-66 (225)
81 1na3_A Designed protein CTPR2; 71.3 16 0.00054 23.9 6.8 46 147-201 26-71 (91)
82 1hz4_A MALT regulatory protein 70.5 14 0.00047 31.8 7.8 55 147-202 110-164 (373)
83 3k9i_A BH0479 protein; putativ 70.3 15 0.0005 26.2 6.8 47 147-202 44-90 (117)
84 2xev_A YBGF; tetratricopeptide 69.0 22 0.00075 25.0 7.6 49 147-201 56-104 (129)
85 2kck_A TPR repeat; tetratricop 68.8 18 0.00062 24.2 6.8 46 147-201 23-68 (112)
86 4gyw_A UDP-N-acetylglucosamine 67.4 65 0.0022 31.8 12.8 135 7-207 45-179 (723)
87 3gw4_A Uncharacterized protein 67.2 23 0.00077 27.0 7.8 56 146-204 123-178 (203)
88 2dba_A Smooth muscle cell asso 66.9 14 0.00048 26.5 6.2 50 147-202 45-94 (148)
89 2hr2_A Hypothetical protein; a 66.8 20 0.00069 28.9 7.5 54 146-201 27-85 (159)
90 2kc7_A BFR218_protein; tetratr 66.5 23 0.00078 23.9 6.9 47 147-201 17-63 (99)
91 3as5_A MAMA; tetratricopeptide 66.4 35 0.0012 24.9 13.1 56 8-65 11-66 (186)
92 2pl2_A Hypothetical conserved 66.2 48 0.0016 26.3 16.3 43 7-50 41-83 (217)
93 3cv0_A Peroxisome targeting si 66.0 52 0.0018 26.7 17.5 31 7-37 57-87 (327)
94 2fbn_A 70 kDa peptidylprolyl i 64.1 48 0.0016 25.6 11.9 31 7-37 40-70 (198)
95 3ma5_A Tetratricopeptide repea 63.4 34 0.0012 23.7 10.7 58 6-65 8-65 (100)
96 3bee_A Putative YFRE protein; 63.2 10 0.00035 27.2 4.6 31 7-37 45-75 (93)
97 3upv_A Heat shock protein STI1 63.1 24 0.00084 25.0 6.8 46 147-201 21-66 (126)
98 4gco_A Protein STI-1; structur 62.4 24 0.00083 25.8 6.8 46 147-201 64-109 (126)
99 2kat_A Uncharacterized protein 62.0 37 0.0013 23.6 11.9 58 7-66 21-78 (115)
100 3k9i_A BH0479 protein; putativ 62.0 39 0.0013 23.8 8.4 58 7-66 29-86 (117)
101 2vgx_A Chaperone SYCD; alterna 61.2 28 0.00097 26.2 7.2 47 147-202 72-118 (148)
102 2lni_A Stress-induced-phosphop 61.1 29 0.00099 24.1 6.8 47 147-202 67-113 (133)
103 3sz7_A HSC70 cochaperone (SGT) 59.5 27 0.00091 26.2 6.8 14 186-199 92-105 (164)
104 3upv_A Heat shock protein STI1 59.0 32 0.0011 24.3 6.8 48 147-203 55-102 (126)
105 1w3b_A UDP-N-acetylglucosamine 58.3 86 0.0029 26.7 13.7 31 8-38 70-100 (388)
106 3vtx_A MAMA; tetratricopeptide 58.3 29 0.00099 26.2 6.8 46 147-201 22-67 (184)
107 2h6f_A Protein farnesyltransfe 58.1 1E+02 0.0036 27.5 11.9 47 8-55 203-249 (382)
108 1qqe_A Vesicular transport pro 57.9 29 0.00098 29.2 7.3 53 147-202 54-106 (292)
109 2kat_A Uncharacterized protein 57.4 42 0.0014 23.3 7.2 48 147-203 36-83 (115)
110 4gfq_A Ribosome-recycling fact 57.2 22 0.00074 30.3 6.2 69 36-109 127-199 (209)
111 2ond_A Cleavage stimulation fa 56.8 86 0.003 26.2 14.3 51 146-201 219-269 (308)
112 2xcb_A PCRH, regulatory protei 56.5 55 0.0019 23.9 8.9 48 147-203 69-116 (142)
113 3ma5_A Tetratricopeptide repea 56.5 46 0.0016 22.9 9.6 72 147-233 24-95 (100)
114 4ga2_A E3 SUMO-protein ligase 56.2 28 0.00096 26.2 6.3 31 8-38 34-64 (150)
115 1elw_A TPR1-domain of HOP; HOP 56.2 34 0.0012 22.9 6.3 45 147-200 55-99 (118)
116 3qky_A Outer membrane assembly 56.2 77 0.0026 25.5 11.3 60 9-68 152-222 (261)
117 3sz7_A HSC70 cochaperone (SGT) 55.7 61 0.0021 24.1 11.2 29 8-36 14-42 (164)
118 2vyi_A SGTA protein; chaperone 55.2 43 0.0015 22.8 6.8 46 147-201 29-74 (131)
119 2vyi_A SGTA protein; chaperone 54.8 44 0.0015 22.7 6.8 47 147-202 63-109 (131)
120 1ihg_A Cyclophilin 40; ppiase 54.6 14 0.00047 33.1 4.9 54 147-201 240-301 (370)
121 1elw_A TPR1-domain of HOP; HOP 53.7 47 0.0016 22.2 6.8 47 147-202 21-67 (118)
122 1a17_A Serine/threonine protei 53.6 41 0.0014 24.3 6.8 47 147-202 64-110 (166)
123 2xcb_A PCRH, regulatory protei 52.6 64 0.0022 23.5 10.5 29 8-36 21-49 (142)
124 2dba_A Smooth muscle cell asso 52.4 46 0.0016 23.5 6.8 46 147-201 82-127 (148)
125 4ga2_A E3 SUMO-protein ligase 51.5 45 0.0015 25.0 6.8 46 147-201 48-93 (150)
126 1dd5_A Ribosome recycling fact 51.0 33 0.0011 28.5 6.3 68 36-109 103-175 (185)
127 1lyp_A CAP18; lipopolysacchari 50.8 32 0.0011 19.9 4.3 26 81-106 4-29 (32)
128 3gyz_A Chaperone protein IPGC; 50.8 37 0.0013 26.1 6.3 47 146-201 86-132 (151)
129 2g0u_A Type III secretion syst 50.1 15 0.00052 27.3 3.6 60 116-182 4-67 (92)
130 2hr2_A Hypothetical protein; a 49.7 29 0.00099 27.9 5.6 78 147-230 74-154 (159)
131 3gyz_A Chaperone protein IPGC; 49.7 85 0.0029 24.0 9.5 57 6-64 37-93 (151)
132 1a17_A Serine/threonine protei 49.6 51 0.0018 23.8 6.8 47 147-202 30-76 (166)
133 1na0_A Designed protein CTPR3; 49.3 57 0.0019 21.9 6.8 46 147-201 26-71 (125)
134 1ise_A Ribosome recycling fact 48.9 35 0.0012 28.4 6.1 68 36-109 103-175 (185)
135 2vsy_A XCC0866; transferase, g 48.8 1.6E+02 0.0055 27.0 13.5 31 7-37 25-55 (568)
136 2v5f_A Prolyl 4-hydroxylase su 48.6 68 0.0023 22.6 7.5 53 147-201 22-74 (104)
137 2wh5_A Acyl-COA-binding domain 48.0 30 0.001 26.2 5.1 49 19-67 10-75 (106)
138 1is1_A Ribosome recycling fact 47.9 36 0.0012 28.3 6.1 68 36-109 103-175 (185)
139 2kck_A TPR repeat; tetratricop 47.8 58 0.002 21.5 7.8 28 9-36 10-37 (112)
140 1na0_A Designed protein CTPR3; 47.7 61 0.0021 21.7 6.8 47 147-202 60-106 (125)
141 1w3b_A UDP-N-acetylglucosamine 47.7 1.3E+02 0.0044 25.5 13.4 44 7-51 35-78 (388)
142 1eh1_A Ribosome recycling fact 47.5 35 0.0012 28.4 5.9 73 36-109 104-176 (185)
143 1kt0_A FKBP51, 51 kDa FK506-bi 47.4 29 0.001 31.7 6.0 53 147-201 285-345 (457)
144 1hh8_A P67PHOX, NCF-2, neutrop 47.2 53 0.0018 25.2 6.8 46 147-201 54-99 (213)
145 2ifu_A Gamma-SNAP; membrane fu 47.1 55 0.0019 27.6 7.4 53 146-202 131-184 (307)
146 1elr_A TPR2A-domain of HOP; HO 47.1 54 0.0018 22.3 6.3 42 7-50 81-122 (131)
147 1wqg_A Ribosome recycling fact 46.4 40 0.0014 28.0 6.1 67 36-108 103-174 (185)
148 4abn_A Tetratricopeptide repea 46.2 1.7E+02 0.0058 26.5 11.3 161 17-201 80-249 (474)
149 3urz_A Uncharacterized protein 46.1 54 0.0019 25.8 6.8 32 5-36 4-35 (208)
150 2h6f_A Protein farnesyltransfe 45.8 1.6E+02 0.0056 26.2 13.0 58 6-65 98-156 (382)
151 2ooe_A Cleavage stimulation fa 45.7 25 0.00085 32.2 5.2 53 146-207 62-114 (530)
152 1p5q_A FKBP52, FK506-binding p 45.6 18 0.0006 31.6 4.0 52 147-200 164-223 (336)
153 3rkv_A Putative peptidylprolyl 44.4 38 0.0013 25.2 5.4 58 7-66 65-122 (162)
154 2vq2_A PILW, putative fimbrial 43.8 1E+02 0.0035 23.2 14.8 62 7-69 44-105 (225)
155 1wao_1 Serine/threonine protei 43.1 48 0.0017 30.5 6.8 15 186-200 87-101 (477)
156 3as5_A MAMA; tetratricopeptide 43.0 76 0.0026 23.0 6.8 47 147-202 93-139 (186)
157 1ge9_A Ribosome recycling fact 42.8 86 0.0029 25.9 7.6 71 35-109 104-174 (184)
158 2r5s_A Uncharacterized protein 41.1 60 0.0021 24.6 6.1 33 6-38 109-141 (176)
159 1na3_A Designed protein CTPR2; 40.3 48 0.0017 21.3 4.8 58 7-66 11-68 (91)
160 1hxi_A PEX5, peroxisome target 40.1 1E+02 0.0034 22.1 8.1 58 6-65 18-75 (121)
161 1qqe_A Vesicular transport pro 40.1 82 0.0028 26.2 7.3 53 147-202 94-147 (292)
162 2c2l_A CHIP, carboxy terminus 40.0 47 0.0016 27.8 5.8 49 152-204 53-103 (281)
163 2kc7_A BFR218_protein; tetratr 39.8 44 0.0015 22.3 4.7 29 9-37 4-32 (99)
164 1xnf_A Lipoprotein NLPI; TPR, 38.5 82 0.0028 24.8 6.8 16 186-201 124-139 (275)
165 2l6j_A TPR repeat-containing p 37.3 46 0.0016 22.4 4.4 31 6-36 5-35 (111)
166 1hh8_A P67PHOX, NCF-2, neutrop 37.3 66 0.0023 24.6 5.9 53 147-200 88-148 (213)
167 2ond_A Cleavage stimulation fa 36.6 57 0.0019 27.4 5.8 47 146-201 185-231 (308)
168 1ouv_A Conserved hypothetical 36.3 1.6E+02 0.0056 23.5 10.3 26 8-33 9-34 (273)
169 2vgx_A Chaperone SYCD; alterna 36.2 1.3E+02 0.0045 22.3 9.0 43 7-50 23-65 (148)
170 2fo7_A Synthetic consensus TPR 34.5 1E+02 0.0035 20.6 6.3 46 147-201 52-97 (136)
171 2xev_A YBGF; tetratricopeptide 33.7 1.2E+02 0.004 20.9 9.8 29 9-37 6-34 (129)
172 1hxi_A PEX5, peroxisome target 33.5 86 0.0029 22.4 5.7 25 11-35 57-81 (121)
173 2fbn_A 70 kDa peptidylprolyl i 32.5 1E+02 0.0035 23.6 6.3 59 6-66 89-147 (198)
174 4i17_A Hypothetical protein; T 32.2 97 0.0033 24.1 6.2 46 147-201 59-104 (228)
175 3qou_A Protein YBBN; thioredox 31.5 1.2E+02 0.0042 25.2 7.1 33 6-38 220-252 (287)
176 2e2e_A Formate-dependent nitri 30.9 1.4E+02 0.0047 22.2 6.6 48 147-202 61-110 (177)
177 3flv_A Acyl-COA-binding domain 30.6 1E+02 0.0035 23.7 5.7 36 19-54 26-62 (119)
178 1zu2_A Mitochondrial import re 29.8 66 0.0023 25.8 4.7 95 126-234 42-143 (158)
179 3urz_A Uncharacterized protein 29.2 2E+02 0.0069 22.3 12.0 28 11-38 60-87 (208)
180 2if4_A ATFKBP42; FKBP-like, al 28.3 48 0.0017 28.8 4.0 49 147-201 196-258 (338)
181 2wb7_A PT26-6P; extra chromoso 27.9 1.8E+02 0.0061 28.0 7.9 54 133-188 435-489 (526)
182 3onj_A T-snare VTI1; helix, HA 27.9 1.7E+02 0.006 21.2 9.2 75 22-97 11-88 (97)
183 1wao_1 Serine/threonine protei 27.2 1E+02 0.0034 28.3 6.1 11 187-197 54-64 (477)
184 1xi4_A Clathrin heavy chain; a 26.3 4.3E+02 0.015 29.0 11.3 23 177-199 1284-1306(1630)
185 4h7y_A Dual specificity protei 26.2 75 0.0026 25.9 4.4 50 144-199 33-86 (161)
186 1ya0_A SMG-7 transcript varian 24.8 26 0.0009 33.4 1.6 47 126-184 158-210 (497)
187 3u3w_A Transcriptional activat 24.7 2.9E+02 0.0098 22.6 18.1 175 10-204 80-268 (293)
188 3u64_A Protein TP_0956; tetrat 24.2 72 0.0024 28.5 4.3 47 147-201 221-268 (301)
189 2lbb_A Acyl COA binding protei 23.9 1.3E+02 0.0044 22.2 5.0 35 18-54 11-45 (96)
190 4b4t_Q 26S proteasome regulato 22.3 3.6E+02 0.012 22.9 19.8 54 147-203 152-205 (434)
191 2c2l_A CHIP, carboxy terminus 22.1 1.1E+02 0.0039 25.3 5.1 30 7-36 6-35 (281)
192 3caz_A BAR protein; thermo-aci 22.0 3.6E+02 0.012 22.7 10.5 111 11-162 100-210 (294)
193 3eab_A Spastin; spastin, MIT, 21.9 2.4E+02 0.0081 20.6 7.7 69 147-232 7-81 (89)
194 1p5q_A FKBP52, FK506-binding p 21.3 3.8E+02 0.013 22.8 12.0 58 7-66 198-255 (336)
195 2ooe_A Cleavage stimulation fa 21.1 2E+02 0.0069 25.9 6.9 20 182-201 400-419 (530)
196 3mkr_A Coatomer subunit epsilo 20.0 2.4E+02 0.0082 23.5 6.8 46 147-201 183-228 (291)
No 1
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=100.00 E-value=1.8e-98 Score=667.58 Aligned_cols=239 Identities=63% Similarity=1.000 Sum_probs=224.4
Q ss_pred CCchHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHH
Q 025044 1 MDKDRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNV 80 (258)
Q Consensus 1 m~~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 80 (258)
|+ +|++++|+||||+|||||+||+.+||++++.+++||.||||||||||||+||++|+|||+|++++|+++.+|++.++
T Consensus 1 m~-~re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~ 79 (248)
T 3uzd_A 1 MV-DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKI 79 (248)
T ss_dssp -C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-H
T ss_pred CC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHH
Confidence 54 79999999999999999999999999999999999999999999999999999999999999999999877888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--ccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHH
Q 025044 81 KRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGG--ESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAAST 158 (258)
Q Consensus 81 ~~i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~--eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 158 (258)
+.+++||++|++||..+|++||++||++|||+++++ |+||||+|||||||||+|||..|++|++++++|+++|++|++
T Consensus 80 ~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~ 159 (248)
T 3uzd_A 80 EMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHE 159 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcCCCC
Q 025044 159 TAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE 238 (258)
Q Consensus 159 ~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e~~~ 238 (258)
+|+.+||||||||||||||||||||||+|+|++||.||++|||+||++||+|+|++|+|||+||||||||||+||++.++
T Consensus 160 iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~eesykDstlImqLLRDNLtlWts~~~~ 239 (248)
T 3uzd_A 160 ISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD 239 (248)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhcccCcc
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CC
Q 025044 239 DG 240 (258)
Q Consensus 239 ~~ 240 (258)
++
T Consensus 240 ~~ 241 (248)
T 3uzd_A 240 DD 241 (248)
T ss_dssp --
T ss_pred cc
Confidence 65
No 2
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=100.00 E-value=2.2e-97 Score=656.85 Aligned_cols=230 Identities=59% Similarity=0.916 Sum_probs=227.1
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHH
Q 025044 4 DRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRI 83 (258)
Q Consensus 4 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i 83 (258)
+|++++|+|||||||||||||+++||++++.+++||.||||||||||||+||++|+|||+|++++|+++.+|++.+++.+
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i 86 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEV 86 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhc
Q 025044 84 KEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAE 163 (258)
Q Consensus 84 ~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~ 163 (258)
++||++|++||..+|++||++||++|||+++++|+||||+|||||||||+|||..|++|++++++|+++|++|+++|+++
T Consensus 87 ~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 166 (236)
T 3iqu_A 87 REYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKE 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhh
Q 025044 164 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWT 233 (258)
Q Consensus 164 L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~ 233 (258)
||||||||||||||||||||||+|+|++||.+||+|||+||++||+|+|++|+|||+||||||||||+||
T Consensus 167 L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld~l~eesykDstlImqLLRDNLtlWt 236 (236)
T 3iqu_A 167 MPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWT 236 (236)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 3
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-96 Score=658.86 Aligned_cols=232 Identities=77% Similarity=1.143 Sum_probs=227.7
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHH
Q 025044 4 DRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRI 83 (258)
Q Consensus 4 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i 83 (258)
+|++++|+||||||||||+||+++||++++.+++||.||||||||||||+||+||+|||+|++++|+++.+|++.+++.+
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhc
Q 025044 84 KEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAE 163 (258)
Q Consensus 84 ~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~ 163 (258)
++||++|++||..+|++||++||++|||+++++|+||||+|||||||||+|||..|++|++++++|+++|++|+++|+++
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcC
Q 025044 164 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 235 (258)
Q Consensus 164 L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e 235 (258)
||||||||||||||||||||||+|+|++||.|||+|||+||++||+|+|++|+|||+||||||||||+|+++
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~eesykDstlImQLLRDNLtlWts~ 261 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD 261 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974
No 4
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=100.00 E-value=4.9e-96 Score=656.74 Aligned_cols=242 Identities=73% Similarity=1.097 Sum_probs=224.2
Q ss_pred CchHHhHHHHHHHHHHhCChHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhH
Q 025044 2 DKDRENFVYIAKLAEQAERYDEMVDAMKKVANLD--VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELN 79 (258)
Q Consensus 2 ~~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~--~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~ 79 (258)
+.+|++++|+|||++|||||+||+++||++++.+ ++||.||||||||||||+||++|+|||+|++++|+++.+|++.+
T Consensus 5 ~~~re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~ 84 (260)
T 1o9d_A 5 PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEH 84 (260)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHH
Confidence 3689999999999999999999999999999998 99999999999999999999999999999999999988888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHH
Q 025044 80 VKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTT 159 (258)
Q Consensus 80 ~~~i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 159 (258)
++.+++||++|++||..+|++||++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|+++
T Consensus 85 ~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~i 164 (260)
T 1o9d_A 85 VNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDI 164 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcCCCCC
Q 025044 160 AEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 239 (258)
Q Consensus 160 a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e~~~~ 239 (258)
|+.+||||||||||||||||||||||+|+|++||.||++|||+||++||+|+|++|+|+|+||||||||||+|+++.+++
T Consensus 165 A~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~EesykDstlImqLLRDNLtlWts~~~~~ 244 (260)
T 1o9d_A 165 ATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDD 244 (260)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTC-----
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHHHHHHHhhhccCcc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred CCch
Q 025044 240 GGDE 243 (258)
Q Consensus 240 ~~~~ 243 (258)
+++.
T Consensus 245 ~~~~ 248 (260)
T 1o9d_A 245 GADE 248 (260)
T ss_dssp ----
T ss_pred cccc
Confidence 6654
No 5
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=100.00 E-value=1.1e-94 Score=640.26 Aligned_cols=231 Identities=77% Similarity=1.142 Sum_probs=227.0
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHH
Q 025044 4 DRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRI 83 (258)
Q Consensus 4 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i 83 (258)
+|++++|+|||++|||||+||+.+||++++.+++||.||||||||||||+||++|+|||+|++++|+++.+|++.+++.+
T Consensus 4 ~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i 83 (234)
T 2br9_A 4 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 83 (234)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhc
Q 025044 84 KEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAE 163 (258)
Q Consensus 84 ~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~ 163 (258)
++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|+++|+.+
T Consensus 84 ~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 163 (234)
T 2br9_A 84 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 163 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhc
Q 025044 164 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (258)
Q Consensus 164 L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~ 234 (258)
||||||+|||||||||||||||+|+|++||.||++|||+|++++|+|+|++|+|+|+||||||||||+|++
T Consensus 164 L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l~eesykDstlImqLLrDNLtlWts 234 (234)
T 2br9_A 164 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (234)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 6
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=100.00 E-value=9.8e-94 Score=641.45 Aligned_cols=232 Identities=63% Similarity=0.969 Sum_probs=226.1
Q ss_pred chHHhHHHHHHHHHHhCChHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhH
Q 025044 3 KDRENFVYIAKLAEQAERYDEMVDAMKKVANLD---VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELN 79 (258)
Q Consensus 3 ~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~---~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~ 79 (258)
.+|++++|+|||++|||||+||+++||++++.+ ++||.||||||||||||+||++|+|||+|++++|+++.+|++.+
T Consensus 26 ~~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~ 105 (260)
T 2npm_A 26 NARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDA 105 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHH
Confidence 469999999999999999999999999999988 99999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHH
Q 025044 80 VKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTT 159 (258)
Q Consensus 80 ~~~i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 159 (258)
++.+++||++|++||..+|++||++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|+++
T Consensus 106 ~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~i 185 (260)
T 2npm_A 106 SKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVV 185 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcC
Q 025044 160 AEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 235 (258)
Q Consensus 160 a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e 235 (258)
| .+||||||||||||||||||||||+|++++||.||++|||+||++||+|+|++|+|+|+||||||||||+|+++
T Consensus 186 A-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~eesykDstlImqLLRDNLtlWts~ 260 (260)
T 2npm_A 186 A-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWTAD 260 (260)
T ss_dssp H-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCTTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred H-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHHHHhccC
Confidence 9 89999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=100.00 E-value=1.2e-90 Score=621.24 Aligned_cols=227 Identities=24% Similarity=0.417 Sum_probs=196.5
Q ss_pred hHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhh-hhhcc-hhHHH
Q 025044 4 DRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EARGN-ELNVK 81 (258)
Q Consensus 4 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~-~~~~~-~~~~~ 81 (258)
+|++++|+|||++|||||+||+++| ++.+++||.||||||||||||+||++|+|||+|++++|++ +.+|+ +.+++
T Consensus 28 ~r~~lv~~AKLaeqaeRYddMv~~M---~e~~~eLs~EERNLLSvAYKNvIgarR~swRiissieqke~e~kg~~~~~~~ 104 (268)
T 3efz_A 28 KLSEGAYRAKLADMVGNYKDVIKVL---TESSDFRDNSLILLLAGSLRNRVTSIRNSLKSIKSQEEKLRKEKSLNNEFIQ 104 (268)
T ss_dssp ------------------CHHHHHH---TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHH---HhcCCcCCHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhccCChHHHHH
Confidence 5999999999999999999999999 7889999999999999999999999999999999999999 67777 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHH
Q 025044 82 RIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAE 161 (258)
Q Consensus 82 ~i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 161 (258)
.+++||++|++||..+|++||++||++|||.++++ ++|||+|||||||||+|||..|++|++++++|+++|++|+++|+
T Consensus 105 ~i~~yr~kie~EL~~iC~diL~llD~~Lip~a~~~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~ 183 (268)
T 3efz_A 105 VIEDIKRDFEESILLESEDVIRIIDDNLLMYSEEG-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRER 183 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCCHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred hcC--CCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH---HHHhhccCCcccHHhHHHHHHHHHhhHhhhhcCC
Q 025044 162 AEL--SPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE---AISELDTLSEESYKDSTLIMQLLRDNLTLWTSDI 236 (258)
Q Consensus 162 ~~L--~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~---Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~e~ 236 (258)
++| |||||||||||||||||||||+|+|++||.+||+|||+ ||++||+|+|++ |+||||||||||+||++.
T Consensus 184 ~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde~~~AIaeld~L~ees----tlImQLLRDNLtlWtsd~ 259 (268)
T 3efz_A 184 SFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSDSEQFSENT----EKLLKILRDNVSQWEQGC 259 (268)
T ss_dssp HHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC--CCCHHH----HHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHhccCChHH----HHHHHHHHHHHHHhhccc
Confidence 899 99999999999999999999999999999999999999 999999999987 999999999999999986
Q ss_pred CC
Q 025044 237 PE 238 (258)
Q Consensus 237 ~~ 238 (258)
++
T Consensus 260 ~~ 261 (268)
T 3efz_A 260 SG 261 (268)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 8
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=100.00 E-value=2.5e-82 Score=556.66 Aligned_cols=215 Identities=22% Similarity=0.241 Sum_probs=199.1
Q ss_pred hHHhHH---HHHHHHHHhCChHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcc
Q 025044 4 DRENFV---YIAKLAEQAERYDEMVDAMKKVAN----LDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGN 76 (258)
Q Consensus 4 ~re~l~---~~AklaeqaeRy~Dm~~~mk~~i~----~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~ 76 (258)
+|++++ |+|||++|||||+||+++||++++ .+++||.||||||||||||+||++|+|||+|++++|++ +|+
T Consensus 2 ~re~~v~~~~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke--k~~ 79 (227)
T 2o8p_A 2 EMDERLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ--LNN 79 (227)
T ss_dssp -CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CSC
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH--cCC
Confidence 589999 999999999999999999999999 89999999999999999999999999999999999998 677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHH
Q 025044 77 ELNVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAA 156 (258)
Q Consensus 77 ~~~~~~i~~yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 156 (258)
+.+++.+++||++|++||..+|++|+++||++|||++ |+||||+|||||||||+|||..|+ +++|+++|++|
T Consensus 80 ~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a---EskVFY~KMKGDYyRYlAE~~~g~-----~e~a~~aY~~A 151 (227)
T 2o8p_A 80 DELVKICSEYVFSLRKDIKAFLQSFEDCVDRLVEKSF---FSKFFKLKVKSDISRYKLEFGLCS-----LEDSKKIHQDA 151 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSH---HHHHHHHHHHHHHHHHHHHTTSSC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCcH---HHHHHHHHHhhhHHHHHHHHcccc-----HHHHHHHHHHH
Confidence 8899999999999999999999999999999999998 999999999999999999999998 89999999999
Q ss_pred HHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH---HHhhccCCcccHHhHHHHHHHHHhhHh
Q 025044 157 STTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA---ISELDTLSEESYKDSTLIMQLLRDNLT 230 (258)
Q Consensus 157 ~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A---i~~ld~l~ee~y~ds~~ilqLLrdNl~ 230 (258)
+++|+++|||||||||||+||||||||||+|+|++||.+|++||+.+ +..-+.. +.++++|+|+|+|||||.
T Consensus 152 ~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m--~~~~~~~~~~q~~~d~~~ 226 (227)
T 2o8p_A 152 FTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENM--DRKAQITVYLQGIKDYIE 226 (227)
T ss_dssp HHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHC----
T ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccc--hhHHHHHHHHHHHHHhcc
Confidence 99999899999999999999999999999999999999999999976 3333322 348889999999999984
No 9
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.40 E-value=0.69 Score=35.87 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHH-HHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVK-RIK 84 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~-~i~ 84 (258)
.-+..++.+..+-|+|++++.+.+++++.+|.- .+=...+..+|-.. +....+...+........ ....... ...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-VETLLKLGKTYMDI-GLPNDAIESLKKFVVLDT--TSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCc--hhHHHHHHHHH
Confidence 345678999999999999999999999988764 44455556665442 444445444433222111 0111100 000
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhc
Q 025044 85 EYRQ-KVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAE 163 (258)
Q Consensus 85 ~yk~-kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~ 163 (258)
-+.. .--++-...+..++. +-|.. ...+...|..|.-+ |+ -+.|...|++|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~-----~~~~~------~~~~~~lg~~~~~~-----g~-----~~~A~~~~~~~l~~---- 136 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA-----LNTVY------ADAYYKLGLVYDSM-----GE-----HDKAIEAYEKTISI---- 136 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----HCTTC------HHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHH----
T ss_pred HHHHcCCHHHHHHHHHHHHH-----hCccc------hHHHHHHHHHHHHh-----CC-----chhHHHHHHHHHHh----
Confidence 0000 000111112222221 12321 11122334443221 21 36788899988765
Q ss_pred CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 164 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 164 L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.|.+| ....|.+..|+ -+|+.++|+..-++|++
T Consensus 137 -~p~~~---~~~~~lg~~~~-~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 137 -KPGFI---RAYQSIGLAYE-GKGLRDEAVKYFKKALE 169 (184)
T ss_dssp -CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred -cchhh---hHHHHHHHHHH-HCCCHHHHHHHHHHHHh
Confidence 45554 33445555544 47999999988777654
No 10
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.76 E-value=0.3 Score=39.74 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 205 (258)
.+.|...|++|+.+++...++.+|.......|.+..|+. +|+.++|+...++++..+-.
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK-QGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 367999999999999888888899888888888877766 69999999999999876543
No 11
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.73 E-value=1.5 Score=36.18 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=100.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhh-hhh--hc
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANL-------DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK-EEA--RG 75 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~-------~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk-~~~--~~ 75 (258)
.-+..++.+....|+|++++.++++++.. ..+....-...+..+|-. .+....|...+...... ... ..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34567888888999999999999998864 222223333344444432 23334444444321111 100 00
Q ss_pred chhHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHH
Q 025044 76 NELNV----KRIKEYR-QKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSM 150 (258)
Q Consensus 76 ~~~~~----~~i~~yk-~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 150 (258)
..... .+..-|. ..=-++-...+...+.+.....-+. ....+..+-..|..|... ++ .+.|.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~-----~~-----~~~A~ 173 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD---HPDVAKQLNNLALLCQNQ-----GK-----YEEVE 173 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTT-----TC-----HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHc-----CC-----HHHHH
Confidence 01000 1111110 0011223334444444443322111 111222222333333221 11 36799
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 025044 151 KAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 151 ~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 205 (258)
..|++|+.++....++.+|.......+.+..|+. +|+.++|+...++++..+-.
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK-QGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 9999999999877788889888888888877666 69999999999999876543
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=93.22 E-value=2.1 Score=38.15 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
++|...|++|+++ .|.++..-.+.+++..|++..+|+.++|+..-++|+
T Consensus 351 ~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 351 EEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6789999999853 345555556678888888888999999988666554
No 13
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=92.86 E-value=0.75 Score=37.63 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+++....-.+.++.......+.+.+ |...|+.++|+...++++.
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY-YTINRDKVKADAAWKNILA 249 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh
Confidence 34788999999998543222222222344444444 5557999999988777764
No 14
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.60 E-value=0.61 Score=44.48 Aligned_cols=58 Identities=3% Similarity=-0.111 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 205 (258)
+.|...|++|+++-+..|+|.||--+....|.++.|+. .|+.++|..+.++|+.--..
T Consensus 368 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 368 EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH-AGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999998777 69999999999998765443
No 15
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.49 E-value=3.3 Score=35.02 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
+.|...|++|+++++. .+....+...+..|.+..|+. +|+.++|+...++|++-+
T Consensus 172 ~~A~~~~~kal~~~~~-~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 172 KKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence 6799999999999853 443222233566777777665 799999999999998765
No 16
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.17 E-value=0.31 Score=45.57 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 205 (258)
+.|...|++|+.+-+..++|.||.......|.++-|.. .|+.++|..+.++|++--..
T Consensus 346 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~-~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 346 EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH-QGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999889999999999999999998777 69999999999988775543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.13 E-value=3.6 Score=34.15 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
.+.|...|++|+++. |.+| ....+.+..++ .+|+.++|+...++++
T Consensus 252 ~~~A~~~~~~a~~~~-----~~~~---~~~~~la~~~~-~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 252 YAEALDYHRQALVLI-----PQNA---STYSAIGYIHS-LMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHHS-----TTCS---HHHHHHHHHHH-HHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhC-----ccch---HHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 367889999988663 3443 23344444444 4799999988776654
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.87 E-value=6.3 Score=35.42 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
.+.|...|++|+++ .|.+| ....+.+..|+ -+|+.++|+...+++++-.
T Consensus 444 ~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 444 FNAAIKLLTKACEL-----DPRSE---QAKIGLAQLKL-QMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHH-HhccHHHHHHHHHHHHHhC
Confidence 46788888888755 45555 34455555544 4799999999888877654
No 19
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=91.33 E-value=8.8 Score=35.35 Aligned_cols=171 Identities=19% Similarity=0.150 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhCCh-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh-HhhhhhhhcchhHHHHHH
Q 025044 7 NFVYIAKLAEQAERY-DEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS-IEQKEEARGNELNVKRIK 84 (258)
Q Consensus 7 ~l~~~AklaeqaeRy-~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~-ieqk~~~~~~~~~~~~i~ 84 (258)
-+..++++....|+| ++++.+++++++.+|.. .+=...|..+|-.. +....|...+.. ++..+. ......+-.
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~---~~~~~~lg~ 178 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCKN---KVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCCC---HHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC---HHHHHHHHH
Confidence 455677777777888 88888888887776653 44555555555432 444445444432 221111 011111111
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHH
Q 025044 85 EYRQ----------KVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQ 154 (258)
Q Consensus 85 ~yk~----------kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~ 154 (258)
-|.. .=-++-...+...+.+ -|.. .. .+-..|..|.... |..+. ...-.+.|..+|+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~----~~--~~~~lg~~~~~~~-~~~~~-~~g~~~~A~~~~~ 245 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLD----GR--SWYILGNAYLSLY-FNTGQ-NPKISQQALSAYA 245 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTC----HH--HHHHHHHHHHHHH-HHTTC-CHHHHHHHHHHHH
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCC----HH--HHHHHHHHHHHHH-Hhhcc-ccchHHHHHHHHH
Confidence 1111 1112223333334332 2321 11 2223444443320 11111 1223578999999
Q ss_pred HHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 155 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 155 ~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+|+.+ .|.+|-......|.+..|+. +|+.++|+...++|+.
T Consensus 246 ~al~~-----~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 246 QAEKV-----DRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHH-----CGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHh-----CCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 99876 23222555667777777666 6999999988777754
No 20
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.01 E-value=7.2 Score=33.79 Aligned_cols=190 Identities=11% Similarity=-0.003 Sum_probs=95.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchh-HH-
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTV---EERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNEL-NV- 80 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~---eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~-~~- 80 (258)
..+..++....+.|+|++++.++++++...+.-.. .=...+..+|-. .+....+...+....+.-...+... ..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45667888888999999999999999987665221 123344444432 3444555554432211110001100 00
Q ss_pred ---HHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhcc-------ccchhhHHHHHHH
Q 025044 81 ---KRIKEY-RQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEF-------KTGDERKDVADLS 149 (258)
Q Consensus 81 ---~~i~~y-k~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~-------~~~~~~~~~~~~a 149 (258)
.+..-| ...--++-...+..++.+.... .+....+..+...|..|...-.. ...++-....+.|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQL-----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 000000 0011123334444455444331 11112222333444444433320 0011222346789
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 150 MKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 150 ~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
...|++|++++... +.+|.......+.+.. |.-.|+.++|+...++++.-.-
T Consensus 203 ~~~~~~al~~~~~~--~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 203 VEFYQENLKLMRDL--GDRGAQGRACGNLGNT-YYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHH
Confidence 99999999988643 2334444444455554 4457999999999888876554
No 21
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.00 E-value=0.48 Score=44.44 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHh
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISE 206 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ 206 (258)
+.|...|++|+++-+..++|.||--.....|.++-|+. .|+.++|..+-++|+.=-...
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~-qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG-LENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999988776 699999999999887655433
No 22
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=90.99 E-value=3.4 Score=33.05 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
+.+..++.+.-+.|+|++++.++.+++..+|.-+..-...+..+|-. .+....|...+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~ 67 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEAADYFDI 67 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHHHHHHHH
Confidence 56778899999999999999999999988774444444445555544 3555666666543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=90.87 E-value=5.4 Score=33.88 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
-+..++.+....|+|++++.++++++..+|. +.+-...+..+|-. .+....|...+.
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~ 156 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN-ESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 3456777777788888888888888776655 33444445555443 244444544443
No 24
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.87 E-value=0.46 Score=44.60 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHh
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISE 206 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ 206 (258)
+.|...|++|+++.+..|.|.||..+...-|.+.-|.. +|+.++|..+.++|+.--...
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~ 373 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKH 373 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHH
Confidence 45778999999999889999999999988888887766 799999999999997665433
No 25
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=90.65 E-value=6.1 Score=32.33 Aligned_cols=55 Identities=15% Similarity=-0.093 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
+.|...|++|++++... .+|...+.+++.-...|...|++++|+...++++.-+-
T Consensus 200 ~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 57889999999988642 23444454555545556668999999999888876543
No 26
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.98 E-value=0.59 Score=37.91 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
+.|...|++|+.+++...+|.||.......|.+..++. +|+.++|+...+++++-.
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 67999999999999888888899988888888887766 699999999999998764
No 27
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.98 E-value=0.59 Score=44.57 Aligned_cols=58 Identities=19% Similarity=0.124 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 205 (258)
+.|...|++|+++.+..|.|.||-.+...-|.+..|.. .|+.++|..+.++|++--..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHH
Confidence 35677899999999889999999999999999888776 69999999999998776443
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.69 E-value=6.4 Score=31.06 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
-+..+|.+..+.|+|++++.++++++...+.. ..-...+..+|-. .+....|...+.
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~ 115 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNVYVV-KEMYKEAKDMFE 115 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45567778888888888888888888765542 3333444444432 244444555544
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=89.49 E-value=0.88 Score=38.72 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 205 (258)
-++|...|++|+++++ .++..+|....+..|.+..|++ +|+.++|+...++|++-+..
T Consensus 171 ~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 171 LKKGIDLFEQILKQLE-ALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 3679999999999985 4666777777788999998887 69999999999999877643
No 30
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.37 E-value=7.9 Score=31.69 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHhhhhhhhhHHHHHHHhHhh
Q 025044 5 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVELT--VEERNLLSVGYKNVIGARRASWRILSSIEQ 69 (258)
Q Consensus 5 re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls--~eERnLlsvAyKn~i~~~R~s~R~l~~ieq 69 (258)
-+.+..+|...-+.|+|++++..+++++...|.-. .+=...+..+|-. .+....|...+..+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 45678889999999999999999999998766543 4555566666644 3666677777665433
No 31
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.23 E-value=8.7 Score=33.43 Aligned_cols=175 Identities=9% Similarity=0.000 Sum_probs=87.5
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHhhhhhhhhHHHHHHHh-Hhhhhhhhcc-hhHHHH
Q 025044 10 YIAKLAEQAERYDEMVDAMKKVANLDVELTV-----EERNLLSVGYKNVIGARRASWRILSS-IEQKEEARGN-ELNVKR 82 (258)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~-----eERnLlsvAyKn~i~~~R~s~R~l~~-ieqk~~~~~~-~~~~~~ 82 (258)
+++.+....|+|++++.+.++.+........ +=...+..+|-. .+..-.|...+.. ++--+. .+. ......
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 185 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKE-HEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHT-CSTTHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh-CccchHHHHH
Confidence 4888888999999999999999865333322 223344444433 2333344433322 111111 010 000000
Q ss_pred H-----HHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHH
Q 025044 83 I-----KEYR-QKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAA 156 (258)
Q Consensus 83 i-----~~yk-~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 156 (258)
+ .-|. ..=-++=...+...+.+.... .++......+.-.|..|..+ |+ -+.|...|++|
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~lg~~y~~~-----g~-----~~~A~~~~~~a 250 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE-----KQPQLMGRTLYNIGLCKNSQ-----SQ-----YEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHH
Confidence 0 0000 000112233344444443321 11112222222344444322 21 36799999999
Q ss_pred HHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 157 STTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 157 ~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
+++++..-. .|.......|.+..|+. +|+.++|+...++|+.-+-
T Consensus 251 l~~~~~~~~--~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 251 IAVFEESNI--LPSLPQAYFLITQIHYK-LGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcc--chhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 999865322 14444445555555554 7999999999988877653
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=89.03 E-value=10 Score=32.42 Aligned_cols=59 Identities=10% Similarity=-0.065 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
+.++.+|....+.|+|++++.++++++...|.- .+=...+..+|-. .+....|...+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAE-NENEQAAIVALQR 124 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 347888999999999999999999999877653 4555566666654 3555666666543
No 33
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.65 E-value=8.8 Score=31.33 Aligned_cols=190 Identities=9% Similarity=-0.037 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhH-H-
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTV---EERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELN-V- 80 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~---eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~-~- 80 (258)
..+...+....+.|+|++++.++++++...|.-.. .=...+..+|-. .+....+...+..........+.... .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 46778899999999999999999999987655211 112233333332 23344444444321111110011111 0
Q ss_pred ---HHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccc----------cchhhHHHH
Q 025044 81 ---KRIKEY-RQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFK----------TGDERKDVA 146 (258)
Q Consensus 81 ---~~i~~y-k~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~----------~~~~~~~~~ 146 (258)
.+..-| ...--++-...+...+.+... ..++...+..+...|..|...-... ...+-....
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-----LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 000001 001112233344444444433 1222223334445566665554411 011223346
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
+.|...|++|+.++.. . +.+|.......+.+. .|.-.|+.++|+...++++.-+-
T Consensus 160 ~~A~~~~~~a~~~~~~-~-~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTA-L-GDRAAQGRAFGNLGN-THYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHHHHHHHHHH-H-TCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888999999988854 2 223444444444444 44557999999999998876654
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=87.52 E-value=17 Score=33.24 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.+.|...|++++++ .|.+| ....+.+.. |...|+.++|....+++++
T Consensus 532 ~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~-~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 532 YDAAIDALNQGLLL-----STNDA---NVHTAIALV-YLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHHH-----SSCCH---HHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCh---HHHHHHHHH-HHHhCCHHHHHHHHHHHHh
Confidence 36788888888765 35555 233333333 4558999999988877765
No 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.51 E-value=9.4 Score=33.86 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCCC----cchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAEL--SPTH----PIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L--~pt~----pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.+.|...|++++..-...+ .|.+ |.......+.+..++. .|+.++|+...++++.
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL-KNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 4678888888887543334 4555 5555566666666555 6999999998888765
No 36
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=87.18 E-value=0.63 Score=43.46 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 205 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 205 (258)
+.|...|++|+++.+..|+|.||..+...-|-+.-|.. +|+.++|..+.++++.--..
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHH
Confidence 45666777777776678999999999999888887766 79999999999998765443
No 37
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=86.98 E-value=1.8 Score=32.21 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
-+.|...|++|+++ .|.+| .+..|.++.|+. +|+.++|+...++|+.-.
T Consensus 24 ~~~A~~~y~~Al~~-----~p~~~---~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 24 FEKAHVHYDKAIEL-----DPSNI---TFYNNKAAVYFE-EKKFAECVQFCEKAVEVG 72 (127)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCH---HHHHhHHHHHHH-hhhHHHHHHHHHHHHHhC
Confidence 36799999999865 45554 345677777666 799999999988887643
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=86.90 E-value=12 Score=30.85 Aligned_cols=56 Identities=14% Similarity=-0.056 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC-cchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTH-PIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~-pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
.+.|...|++|+.+....-.+.+ |-...+..+.+..++ .+|+.++|+...++++..
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhh
Confidence 36789999999998854333222 333334555565544 479999999988887754
No 39
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=85.85 E-value=19 Score=32.20 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHh--cCCCCCcc---hHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEA--ELSPTHPI---RLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~--~L~pt~pi---rLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
..+...|.+|....+. .+.|.+|- .++.++..--..|...|+.++|+...++++.
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3445556666665543 45566653 2455566656667778999999998888765
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=85.51 E-value=16 Score=31.05 Aligned_cols=54 Identities=15% Similarity=0.025 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
+.|...|++|+.++.. . +.++.......|.+.. |..+|+.++|+...++|+.-+
T Consensus 204 ~~A~~~~~~al~~~~~-~-~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKE-F-GDKAAERRAYSNLGNA-YIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHHHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-c-CCcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHH
Confidence 5688889999888854 2 2223222233444444 445789999888888877554
No 41
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=85.44 E-value=3.1 Score=36.44 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=46.1
Q ss_pred eeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHh-hhHHHHHHHhhCChHHHHHHHHH
Q 025044 120 VFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQ 198 (258)
Q Consensus 120 Vfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yEi~~~~~~A~~iak~ 198 (258)
.+|+-.+|.+|...-. -+.|...|++|+.+++. . | +|...+.+ .+.+..|+ .+|+.++|+...++
T Consensus 103 ~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~-~-~-~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 103 YYFNFFRGMYELDQRE----------YLSAIKFFKKAESKLIF-V-K-DRIEKAEFFFKMSESYY-YMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGG-C-C-CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHhh-C-C-CHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 4555566766643322 36789999999998853 3 2 34444444 44555544 48999999999888
Q ss_pred HHHHH
Q 025044 199 AFDEA 203 (258)
Q Consensus 199 afd~A 203 (258)
|++-+
T Consensus 169 al~~~ 173 (383)
T 3ulq_A 169 AYEIY 173 (383)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=85.42 E-value=17 Score=31.32 Aligned_cols=55 Identities=13% Similarity=-0.051 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
+.|...|++|+.++.. . .++...+.+++.-...|--.|+.++|+...++++..+-
T Consensus 240 ~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 240 QAAIEHHQERLRIARE-F--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHHHHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-c--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5688888999888854 2 13333444444444445557899988888888776554
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.39 E-value=18 Score=31.55 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
..+|.+..+.|+|++++.++.+++...|. +..-...+..+|-. .+....|...+..
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIK-EGEPRKAISDLKA 202 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCGGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 44577788899999999999999877654 34445555555543 3444555555543
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=85.03 E-value=17 Score=30.91 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=95.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhH-H-
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTV---EERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELN-V- 80 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~---eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~-~- 80 (258)
..+..++...-..|+|++++.++.+++...|.-.. .=...+..+|-. .+....+...+.....-....+.... .
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34667888888999999999999999987655221 223344444432 23444444444321111100011100 0
Q ss_pred ---HHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhc-------ccc---chhhHHHH
Q 025044 81 ---KRIKEYR-QKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAE-------FKT---GDERKDVA 146 (258)
Q Consensus 81 ---~~i~~yk-~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE-------~~~---~~~~~~~~ 146 (258)
.+..-|. ..=-++-...+...+.+.... .++...+..+-..|..|...-. ... .++-....
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 0000010 001122333444444444322 1111122222333444333322 111 12233446
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
+.|...|++|+.++.. + +.+|.......|.+..|+ .+|+.++|+...++|+.-+-
T Consensus 164 ~~A~~~~~~al~~~~~-~-~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTA-L-GDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Confidence 7899999999999864 3 333444445555555544 47999999999888876643
No 45
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.83 E-value=19 Score=31.35 Aligned_cols=57 Identities=14% Similarity=-0.041 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
.++|...|++|..++.. .+ ..|.-.|...+...-+|...++..+|+..-.++|...-
T Consensus 191 ~~~A~~~~~~al~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 191 LAKSKASLTAARTAANS-IY-CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CC-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 36799999999999853 43 23344566667777777888999999998888887654
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=84.25 E-value=14 Score=29.19 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
.-+..++.+....|+|++++.++++++...+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence 34567888999999999999999999987655
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=84.05 E-value=17 Score=30.12 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.+.|...|++|+++ .|.+| ....+.+..++ .+|+.++|+...++|+.
T Consensus 288 ~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~-~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 288 PVEAIRICSEVLQM-----EPDNV---NALKDRAEAYL-IEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----CcccH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 36688888888765 34444 34555555544 47999999887777664
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=83.94 E-value=18 Score=35.90 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRIL 64 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l 64 (258)
+-+..++.+..+.|+|++++.+.++.++.+|+.. +=.+-|..+|... +..-.|...+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~-~a~~nLg~~l~~~-g~~~eA~~~~ 66 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA-AAHSNLASVLQQQ-GKLQEALMHY 66 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3466789999999999999999999999988753 3444555555442 3334444433
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=83.57 E-value=15 Score=29.19 Aligned_cols=166 Identities=9% Similarity=0.016 Sum_probs=83.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKE 85 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~ 85 (258)
+-+..+|.+..+.|+|++++.++++++...|.. .+-...+..+|-. .+....|...+....+..... ......+..-
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQT-EMEPKLADEEYRKALASDSRN-ARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHH
Confidence 345678888889999999999999998876553 4444455555543 344555555554322221100 0111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCC
Q 025044 86 YRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELS 165 (258)
Q Consensus 86 yk~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~ 165 (258)
|.. ..--.+.+..++..+- ....+. ....+...|..|... |+ .+.|...|++|+.. .
T Consensus 115 ~~~------~g~~~~A~~~~~~~~~-~~~~~~-~~~~~~~la~~~~~~-----g~-----~~~A~~~~~~~~~~-----~ 171 (252)
T 2ho1_A 115 LYE------QKRYEEAYQRLLEASQ-DTLYPE-RSRVFENLGLVSLQM-----KK-----PAQAKEYFEKSLRL-----N 171 (252)
T ss_dssp HHH------TTCHHHHHHHHHHHTT-CTTCTT-HHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHH-----C
T ss_pred HHH------HhHHHHHHHHHHHHHh-CccCcc-cHHHHHHHHHHHHHc-----CC-----HHHHHHHHHHHHhc-----C
Confidence 111 1112334444444332 111111 122222334433221 11 35677888887754 2
Q ss_pred CCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 166 PTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 166 pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
|.+| ....+.+..++. .|+.++|....++++.
T Consensus 172 ~~~~---~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 172 RNQP---SVALEMADLLYK-EREYVPARQYYDLFAQ 203 (252)
T ss_dssp SCCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred cccH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 3333 233444444444 6899998887777653
No 50
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=83.56 E-value=16 Score=31.96 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..++.+..+.|+|++++.++++++..+|. +.+-...+..+|-. .+....|...+..
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQ-LGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 3556788888999999999999999876554 34445555555544 3555666666654
No 51
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=82.60 E-value=29 Score=31.65 Aligned_cols=55 Identities=9% Similarity=-0.000 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
.+.|...|++|+++... . +.+|-....+++.-...|-..|+.++|+...++++..
T Consensus 491 ~~~A~~~~~~~~~~~~~-~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKK-T-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHHHHHHH-S-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc-c-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 46799999999988743 2 4456553334444444455589999999998888754
No 52
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=82.22 E-value=2.2 Score=32.59 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhcC---CCC-------CcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAEL---SPT-------HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L---~pt-------~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+..... .|+ +|....+.+|.+..|+. +|+.++|+..+.+|+.
T Consensus 28 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 28 KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHh
Confidence 679999999999874321 233 67777888888888776 6999999999888854
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=82.05 E-value=20 Score=29.60 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHH
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQ 88 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ 88 (258)
..+|.+....|+|++++.++++++...|. +.+-...+..+|-. .+....+...+.......... ......+..-|..
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~ 200 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIK-EGEPRKAISDLKAASKLKSDN-TEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 44588899999999999999999987664 34555555555544 355566666665433221100 0111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCCCCccceeheeec--------cccccchhccccchhhHHHHHHHHHHHHHHHH
Q 025044 89 KVEAELSKISTDIMQVIDEHL--IPSCTGGESTVFYYKMK--------GDYYRYLAEFKTGDERKDVADLSMKAYQAAST 158 (258)
Q Consensus 89 kie~EL~~~C~eii~lid~~L--ip~~~~~eskVfy~Kmk--------gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 158 (258)
. .--.+.+..+...+ -|.. +....+|.++. |..+. ..+ -.+.|...|+++++
T Consensus 201 -----~-~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~-----~~~-----~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 201 -----L-GDHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELI-----RDG-----RYTDATSKYESVMK 262 (359)
T ss_dssp -----H-TCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHH-----HTT-----CHHHHHHHHHHHHH
T ss_pred -----c-CCHHHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHHHHHHHHHHH-----HcC-----CHHHHHHHHHHHHh
Confidence 0 00112222222222 2321 11111221111 22111 111 13567888888875
Q ss_pred HHHhcCCCCCcchH-HHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 159 TAEAELSPTHPIRL-GLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 159 ~a~~~L~pt~pirL-gL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
. .|.+|... .+..+.+..++. +|+.++|+...++++..
T Consensus 263 ~-----~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 263 T-----EPSVAEYTVRSKERICHCFSK-DEKPVEAIRICSEVLQM 301 (359)
T ss_dssp H-----CCSSHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred c-----CCCchHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh
Confidence 4 35566443 344555555554 79999999998888764
No 54
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=81.97 E-value=20 Score=31.17 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
.+++...-..|+|++++.++++.....+.
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~ 133 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPF 133 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhh
Confidence 45677778899999999999998865433
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=81.09 E-value=20 Score=28.76 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=38.1
Q ss_pred CCchHHhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 1 MDKDRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 1 m~~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
|..+-+-+..++.+..+.|+|++++..+.+++..+|.. .+=...+..+|-. .+....+...+.
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~-~g~~~~A~~~~~ 63 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD-PEALYWLARTQLK-LGLVNPALENGK 63 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 33333456677888888888888888888888776653 4444455555433 344455555553
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=80.98 E-value=3.1 Score=34.23 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
.+.|...|++|+++.....++.+|.......+.+..++. .|+.++|+...+++++...
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 127 YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence 367999999999999777777788877777777777665 7999999999999887643
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=80.71 E-value=24 Score=29.62 Aligned_cols=58 Identities=10% Similarity=-0.049 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
..++.++.+..+.|+|++++.++++++...|. +..=...+..+|... +....|...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~-g~~~~A~~~~~ 122 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAEN-EQELLAISALR 122 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 34778999999999999999999999987665 344455555555432 44445555443
No 58
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=80.54 E-value=11 Score=26.25 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+.. ..++.+|.......+.+..++. +|+.++|+...++++.
T Consensus 55 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 55 NKCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYFK-EEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 678999999998874 3455555555666777776665 7999999887776665
No 59
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=80.33 E-value=5.9 Score=28.54 Aligned_cols=56 Identities=14% Similarity=-0.075 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
.+.|...|++|++++... .+|..++.+++.-...|-..|+.++|+...++|++-+-
T Consensus 25 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEF---GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 367899999999998642 34455555555444455557999999999888877653
No 60
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=80.00 E-value=23 Score=28.94 Aligned_cols=58 Identities=16% Similarity=-0.005 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
+.++.+|...-+.|+|++++.++++++...|. +..-...+..+|-.. +....|...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~~A~~~~~ 79 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAEN-EKDGLAIIALN 79 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 34566777777777777777777777766554 333444444444332 33444444443
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=79.84 E-value=18 Score=27.69 Aligned_cols=167 Identities=11% Similarity=-0.023 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEY 86 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~y 86 (258)
-+..++.+..+.|+|++++.++++++...|.. .+-...+..+|-. .+....+...+....+..... ......+..-|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~ 86 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDS-AEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Confidence 45677888899999999999999999876653 4444555555543 344555655554322211100 01111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 025044 87 RQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSP 166 (258)
Q Consensus 87 k~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~p 166 (258)
.. ...--.+.+..++..+- ....+ .....+...|..|... |+ .+.|...|+++++. .|
T Consensus 87 ~~-----~~~~~~~A~~~~~~~~~-~~~~~-~~~~~~~~l~~~~~~~-----~~-----~~~A~~~~~~~~~~-----~~ 144 (225)
T 2vq2_A 87 CG-----RLNRPAESMAYFDKALA-DPTYP-TPYIANLNKGICSAKQ-----GQ-----FGLAEAYLKRSLAA-----QP 144 (225)
T ss_dssp HT-----TTCCHHHHHHHHHHHHT-STTCS-CHHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHH-----ST
T ss_pred HH-----hcCcHHHHHHHHHHHHc-CcCCc-chHHHHHHHHHHHHHc-----CC-----HHHHHHHHHHHHHh-----CC
Confidence 11 00011223333333222 11111 1122223344444221 21 35678888888754 34
Q ss_pred CCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 167 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 167 t~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
.+| ....+.+..++ -.|+.++|+...++++..
T Consensus 145 ~~~---~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 145 QFP---PAFKELARTKM-LAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp TCH---HHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred CCc---hHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 443 23344444444 479999999988887653
No 62
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=79.45 E-value=8.4 Score=27.68 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
+.|...|++|+.++.. .+ .+|.......|.+..++. .|+.++|+...+++++-+.
T Consensus 66 ~~A~~~~~~a~~~~~~-~~-~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQ-LK-DRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hC-CcHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 6789999999999864 22 223344445555555554 7999999999998887654
No 63
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=79.45 E-value=28 Score=29.52 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..++.+..+.|+|++++.++++++..+|.. ..-...+..+|.. .+....|...+..
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQPNN-LKALMALAVSYTN-TSHQQDACEALKN 158 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHc-cccHHHHHHHHHH
Confidence 45678889999999999999999999887653 4445555555543 3445555555543
No 64
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=79.21 E-value=33 Score=30.22 Aligned_cols=172 Identities=11% Similarity=-0.042 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEY 86 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~y 86 (258)
-+..++.+....|+|++++.++++++...|... +-...+..+|-. .+....+...+.......... ......+..-|
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 382 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENI-FPYIQLACLAYR-ENKFDDCETLFSEAKRKFPEA-PEVPNFFAEIL 382 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS-HHHHHHHHHTTT-TTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH-HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcccC-HHHHHHHHHHH
Confidence 345677888888889999988888887766633 233333443322 344555555554432221110 11111111111
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCC
Q 025044 87 R-QKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELS 165 (258)
Q Consensus 87 k-~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~ 165 (258)
. ..--++-......++.+- |........+..+-..|..|.... ..| -.+.|...|++|+.+ .
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~--~~~-----~~~~A~~~~~~a~~~-----~ 445 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELE-----NKLDGIYVGIAPLVGKATLLTRNP--TVE-----NFIEATNLLEKASKL-----D 445 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-----HTSSSCSSCSHHHHHHHHHHHTSC--CTT-----HHHHHHHHHHHHHHH-----C
T ss_pred HHCCCHHHHHHHHHHHHHhh-----hccchHHHHHHHHHHHHHHHhhhh--hcC-----CHHHHHHHHHHHHHh-----C
Confidence 1 111122223333333322 322111111112222333332100 012 246788888888765 3
Q ss_pred CCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 166 PTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 166 pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
|.+| ....+.+..+ .-.|+.++|+...+++++-
T Consensus 446 ~~~~---~~~~~la~~~-~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 446 PRSE---QAKIGLAQMK-LQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTCH---HHHHHHHHHH-HHTTCHHHHHHHHHHHHHH
T ss_pred cccH---HHHHHHHHHH-HHhcCHHHHHHHHHHHHHh
Confidence 4444 3334444444 4579999999888777653
No 65
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=78.99 E-value=6 Score=29.33 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|..+|++|+++ .|.+| .+..|.+..|+. +|+.++|+...++|+.
T Consensus 30 ~~A~~~~~~al~~-----~p~~~---~~~~~~~~~~~~-~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 30 PTAMRHYNEAVKR-----DPENA---ILYSNRAACLTK-LMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHhhHHHh-hccHHHHHHHHHHHHH
Confidence 6788899998854 45554 445666666665 7999999988777764
No 66
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=78.49 E-value=24 Score=28.19 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 148 LSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 148 ~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.|...|++++..... ..|....+.++.+..|+. +|+.++|+...++++.
T Consensus 195 ~a~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 195 TLMERLKADATDNTS----LAEHLSETNFYLGKYYLS-LGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHCCSHHH----HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccc----ccccccHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence 455566655543321 112223445555555554 6999999887777653
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=78.02 E-value=5 Score=35.12 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=48.6
Q ss_pred ceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHH
Q 025044 119 TVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 198 (258)
Q Consensus 119 kVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~ 198 (258)
..+|+-.+|.+|... |+ -+.|...|++|+.++.. ++ .+|..-....|.+.+|+. +|++++|+...++
T Consensus 100 ~~~~~~~~g~~~~~~-----g~-----~~~A~~~~~~al~~~~~-~~-~~~~~a~~~~~lg~~y~~-~~~~~~A~~~~~~ 166 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQ-----KE-----YVEAIGYYREAEKELPF-VS-DDIEKAEFHFKVAEAYYH-MKQTHVSMYHILQ 166 (378)
T ss_dssp HHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHTTGGG-CC-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----CC-----HHHHHHHHHHHHHHHhh-CC-ChHHHHHHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 344555667666443 22 36799999999998853 33 334444455556665555 7999999999998
Q ss_pred HHHHHH
Q 025044 199 AFDEAI 204 (258)
Q Consensus 199 afd~Ai 204 (258)
|++-.-
T Consensus 167 al~~~~ 172 (378)
T 3q15_A 167 ALDIYQ 172 (378)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
No 68
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=77.59 E-value=11 Score=29.53 Aligned_cols=85 Identities=21% Similarity=0.119 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh-----HhhhhhhhcchhHHHHHHHHHHHH
Q 025044 19 ERYDEMVDAMKKVA---NLDVELTVEERNLLSVGYKNVIGARRASWRILSS-----IEQKEEARGNELNVKRIKEYRQKV 90 (258)
Q Consensus 19 eRy~Dm~~~mk~~i---~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~-----ieqk~~~~~~~~~~~~i~~yk~ki 90 (258)
+|.+..++.+|.-+ -++++||.|-|.=|.--.|...-.-|-|.|-+.. +..-+. .+ .+-++-..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~K-dk-----eISEDe~kr~ 84 (121)
T 3lf9_A 11 ERMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGK-DK-----EVNWFDISQA 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-CT-----TSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-cC-----CCCHHHHHhH
Confidence 56777788887665 3589999999999999999988888888888732 111110 00 0113334455
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 025044 91 EAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 91 e~EL~~~C~eii~lid~~L 109 (258)
+++|..+.+..+.-||..|
T Consensus 85 e~eIQKLTDkyIkkID~ll 103 (121)
T 3lf9_A 85 LWEIQKLTDVAVKKIDEVL 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666665555543
No 69
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=76.80 E-value=25 Score=27.57 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
+.+..++.+.-..|+|++++.++.+++... -+..=...+..+|-. .+....|...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~-~~~~~~A~~~~~ 62 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYE-KGEYETAISTLN 62 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence 456678888888999999999999988766 334444555555433 233444444443
No 70
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=76.67 E-value=17 Score=29.13 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
+.++.+|.+.-+.|+|++++.+++++++.+|.-. +-...+..+|-. .+....|...+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~-~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-YIYNRRAVCYYE-LAKYDLAQKDIET 62 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-TTHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 4577888888889999999999999888766532 234445554433 3455556555544
No 71
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=76.65 E-value=7.6 Score=28.65 Aligned_cols=52 Identities=8% Similarity=-0.011 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
+.|...|++|+++.. ..++.++.+-....|.+.. |.-+|+.++|+..-++|+
T Consensus 59 ~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~-~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 59 AECVQFCEKAVEVGR-ETRADYKLIAKAMSRAGNA-FQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-ccchhhHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Confidence 678999999999974 4555555433344555555 455799999998655554
No 72
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=75.55 E-value=23 Score=29.99 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
-+.|...|++|+.+... .+. +| ..+.++.-.+..|-.+|+.++|+...++++
T Consensus 171 ~~~A~~~~~~al~~~~~-~~~-~~-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKE-MEN-YP-TCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-TTC-HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-cCC-hh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 36799999999999854 222 22 333333334445556799999988776654
No 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=75.40 E-value=6.3 Score=35.02 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAE-LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~-L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
+.|.++|++|+++.+.. ....||-.+...-|.+.-|+. +|+.++|...-+++.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~-~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH-MGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH-cCChHHHHHHHHHHH
Confidence 67999999999998653 345677777777788877766 799999987666554
No 74
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=75.29 E-value=18 Score=28.36 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
.+..+|...-+.|+|++++.++++++...|.- .+-...+..+|-. .+....|...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~ 82 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSS-VNELERALAFYDK 82 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 45667888888999999999999998866553 4444455555532 4555566666544
No 75
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=73.69 E-value=11 Score=28.82 Aligned_cols=55 Identities=9% Similarity=-0.000 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
+.|...|++|+.+++ ..+ .+|...+.+++.-...|-.+|++++|+...++|+.-+
T Consensus 83 ~~A~~~~~~al~~~~-~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 83 DAARRCFLEERELLA-SLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 678999999999996 344 3454555555444445555899999999999888654
No 76
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=72.98 E-value=28 Score=26.28 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+ .|.+| ....+.+..|+. .|+.++|+...++++.
T Consensus 98 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALAL-----DSNEI---TALMLLASDAFM-QANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHH-cccHHHHHHHHHHHHh
Confidence 5678888888765 34444 445566666555 6999998887766654
No 77
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=72.88 E-value=12 Score=25.59 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
+.|...|++|+.+ .|.+| ....|.+..++. +|+.++|+...++|+
T Consensus 21 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~-~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 21 REAVHCYDQLITA-----QPQNP---VGYSNKAMALIK-LGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 5688889988865 44554 344566666555 799999988776665
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=72.59 E-value=34 Score=27.06 Aligned_cols=60 Identities=8% Similarity=-0.073 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIE 68 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ie 68 (258)
-+..+|.+..+.|+|++++.++++++...|.- ..-...+..+|-. .+....+.+.+....
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRN-ARVLNNYGGFLYE-QKRYEEAYQRLLEAS 132 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 45678889999999999999999999876653 4444555555543 455566666665443
No 79
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=72.35 E-value=15 Score=30.78 Aligned_cols=190 Identities=13% Similarity=0.023 Sum_probs=90.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-----hhhhhhhhHHHHHHHh-HhhhhhhhcchhH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGY-----KNVIGARRASWRILSS-IEQKEEARGNELN 79 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAy-----Kn~i~~~R~s~R~l~~-ieqk~~~~~~~~~ 79 (258)
+.+...+...-..|+|++++.++++.++..+. ..+....+..-| -...+....|...+.. ++...........
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34456677777789999999999998876555 333222111111 1112233345444432 2111111000000
Q ss_pred H----HHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHH
Q 025044 80 V----KRIKEYR-QKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQ 154 (258)
Q Consensus 80 ~----~~i~~yk-~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~ 154 (258)
. .+-.-|. ..=-++-...++..+.+.+. .|.. +...+..+-..|..|..+ ++ -+.|...|+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--~~~~--~~~~~~~~~nlg~~y~~~-----~~-----y~~Al~~~~ 220 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEA--LHDN--EEFDVKVRYNHAKALYLD-----SR-----YEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCC--HHHHHHHHHHHHHHHHHT-----TC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--cCcc--ccchHHHHHhHHHHHHHH-----hh-----HHHHHHHHH
Confidence 1 0111111 11112334455556555543 2321 111111122334443221 11 367999999
Q ss_pred HHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHH
Q 025044 155 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYK 216 (258)
Q Consensus 155 ~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ 216 (258)
+|++++.. ..++..++.+++.--..|.-+|+.++|+. ..|+.|+.-.+.++...++
T Consensus 221 kal~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~---~~~~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 221 KAIEISCR---INSMALIGQLYYQRGECLRKLEYEEAEIE---DAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHH---TTBCSSHHHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHh---cCcHHHHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHHHHHHhCcHhhH
Confidence 99999853 23444556555555556667899999942 2344444444555555553
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=71.84 E-value=36 Score=27.14 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVE--LTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~--Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
.+..+|...-+.|+|++++..+++++...|. +..+-...+..+|-. .+....|...+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 4556777778888888888888888876553 334445555555533 3455555555554
No 81
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=71.33 E-value=16 Score=23.92 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++.
T Consensus 26 ~~A~~~~~~a~~~-----~~~~~---~~~~~l~~~~~~-~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 26 DEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYK-QGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 5688888888865 34443 344566665554 7999999988777765
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=70.50 E-value=14 Score=31.77 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.++...-.+.+|.......|.+..+++ .|+.++|....++++.-
T Consensus 110 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Confidence 56889999999998754444556665566667776666 59999998888887654
No 83
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=70.33 E-value=15 Score=26.21 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+++ .|.+ ..+..|.+..++. +|+.++|+...++++..
T Consensus 44 ~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 44 RKAEAVLANGVKQ-----FPNH---QALRVFYAMVLYN-LGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCc---hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 6688888888755 4455 3455666666665 79999999988887754
No 84
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=68.96 E-value=22 Score=24.96 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++++.. .|.+|......++.+..++. +|+.++|+..-++++.
T Consensus 56 ~~A~~~~~~~~~~-----~p~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 56 QLAEAQFRDLVSR-----YPTHDKAAGGLLKLGLSQYG-EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 5688888888753 46777655566666666664 7999999887666654
No 85
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=68.76 E-value=18 Score=24.20 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+ .|.++ ....+.+..++. +|+.++|+...++++.
T Consensus 23 ~~A~~~~~~a~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 23 TESIDLFEKAIQL-----DPEES---KYWLMKGKALYN-LERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CcCCH---HHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence 5688888888765 23333 345666666665 6999999887777664
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=67.42 E-value=65 Score=31.84 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEY 86 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~y 86 (258)
-+..++.+..+.|+|++++.+.++.++.+|+.. .+|-|+-. +-... | ...+.+..|
T Consensus 45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--------~a~~nLg~-----------~l~~~---g--~~~~A~~~~ 100 (723)
T 4gyw_A 45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--------DAYSNMGN-----------TLKEM---Q--DVQGALQCY 100 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------HHHHHHHH-----------HHHHT---T--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHH-----------HHHHc---C--CHHHHHHHH
Confidence 356789999999999999999999999887753 22322211 11100 1 122344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 025044 87 RQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSP 166 (258)
Q Consensus 87 k~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~p 166 (258)
++-|+ +-|.. ..+ +-..|..|+-+ |+ .+.|..+|++|+++ .|
T Consensus 101 ~kAl~-----------------l~P~~----~~a--~~~Lg~~~~~~-----g~-----~~eAi~~~~~Al~l-----~P 142 (723)
T 4gyw_A 101 TRAIQ-----------------INPAF----ADA--HSNLASIHKDS-----GN-----IPEAIASYRTALKL-----KP 142 (723)
T ss_dssp HHHHH-----------------HCTTC----HHH--HHHHHHHHHHT-----TC-----HHHHHHHHHHHHHH-----CS
T ss_pred HHHHH-----------------hCCCC----HHH--HHHHHHHHHHc-----CC-----HHHHHHHHHHHHHh-----CC
Confidence 44332 12321 111 11223332211 11 46799999999865 45
Q ss_pred CCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 025044 167 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 207 (258)
Q Consensus 167 t~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 207 (258)
.+|- ...|.+. .|..+++.++|++..+++..-.-..+
T Consensus 143 ~~~~---a~~~L~~-~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 143 DFPD---AYCNLAH-CLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp CCHH---HHHHHHH-HHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred CChH---HHhhhhh-HHHhcccHHHHHHHHHHHHHhChhHH
Confidence 5553 3344443 35557999999998888877655443
No 87
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=67.18 E-value=23 Score=26.96 Aligned_cols=56 Identities=11% Similarity=-0.094 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
.+.|...|++|+.++.. . .+|...+.+++.-...|.-.|++++|+...++|++-+-
T Consensus 123 ~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 123 LAGARQEYEKSLVYAQQ-A--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-c--cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36789999999999853 2 34555565555555566668999999988887776654
No 88
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.89 E-value=14 Score=26.45 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+. +.|.+|....+..+.+..|+. +|+.++|+...++++..
T Consensus 45 ~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 45 GGALAAYTQALG-----LDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEK 94 (148)
T ss_dssp HHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhh
Confidence 456777777753 456666556667777776655 68899888888777653
No 89
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=66.77 E-value=20 Score=28.90 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHH-----HhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLG-----LALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-----L~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
-+.|..+|++|+++.-. .|+..++.+. +..|-+.-+.. +|+.++|+..+.+|+.
T Consensus 27 ~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 36799999999998743 3333333333 66666665555 7999999998877765
No 90
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=66.45 E-value=23 Score=23.89 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|++. .|.+|.. ...+.+..|+. +|+.++|+...++++.
T Consensus 17 ~~A~~~~~~al~~-----~p~~~~~--~~~~lg~~~~~-~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 17 ENALQALEEFLQT-----EPVGKDE--AYYLMGNAYRK-LGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHHHH-----CSSTHHH--HHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCcHHH--HHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence 5677777777654 4555421 45566666655 6999999887777664
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=66.39 E-value=35 Score=24.90 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
+..++.+..+.|+|++++..+++++...|.- ..-...+..+|-. .+....+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~A~~~~~ 66 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFD-VDVALHLGIAYVK-TGAVDRGTELLE 66 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-hHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 4567888888999999999999988765542 3333344444432 344445555544
No 92
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=66.15 E-value=48 Score=26.34 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGY 50 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAy 50 (258)
-+..++.+..+.|+|++++.++++++..+|... +=...+..+|
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~ 83 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYL-GGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Confidence 456788899999999999999999998877643 3334444444
No 93
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=66.05 E-value=52 Score=26.72 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
-+..++.+..+.|+|++++.+++++++..|.
T Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 57 AWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 4567888899999999999999999987654
No 94
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=64.06 E-value=48 Score=25.59 Aligned_cols=31 Identities=6% Similarity=0.016 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
.+..++.+....|+|++++.++++++...+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 70 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH 70 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 4567788888899999999999999876443
No 95
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=63.40 E-value=34 Score=23.66 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
.-+..++.+..+.|+|++++.+++++++.+|.... =...+..+|.. .+..-.|...+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~-~g~~~~A~~~~~ 65 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVG-TYYHLGKLYER-LDRTDDAIDTYA 65 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHH-cCCHHHHHHHHH
Confidence 34567899999999999999999999998887544 45556666644 344444544443
No 96
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=63.21 E-value=10 Score=27.22 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
-+++++.++.+.|+|++++.+..++.+.+|+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888888888888888877776
No 97
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=63.05 E-value=24 Score=24.96 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+ .|.+| .+..|.+..++. +|+.++|+...++|+.
T Consensus 21 ~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 21 PNAVKAYTEMIKR-----APEDA---RGYSNRAAALAK-LMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Confidence 4577777777654 34443 344455555444 6888888777776654
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=62.37 E-value=24 Score=25.84 Aligned_cols=46 Identities=7% Similarity=-0.012 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+++ .|.+| ....|.+..|+. +|+.++|+..-++|+.
T Consensus 64 ~~A~~~~~~al~~-----~p~~~---~a~~~lg~~~~~-~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 64 QRALDDCDTCIRL-----DSKFI---KGYIRKAACLVA-MREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----hhhhh---HHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 5688899998864 45554 344555555544 7999999877666554
No 99
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=62.03 E-value=37 Score=23.63 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..++.+..+.|+|++++.++++++..+|.. .+=...|..+|.. .+....|...+..
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~ 78 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQG-QGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 45678889999999999999999999887754 3445566666654 3555556555543
No 100
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=61.95 E-value=39 Score=23.81 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..++.+..+.|+|++++.+++++++.+|.. .+=...+..+|-. .+....|...+..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYN-LGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 45678889999999999999999999988775 4555566666654 3556666666643
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=61.21 E-value=28 Score=26.19 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|..+|++|+.+ .|.||. ..+|.++.|+. +|+.++|+...++|+.-
T Consensus 72 ~~A~~~~~~al~l-----~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 72 DLAIHSYSYGAVM-----DIXEPR---FPFHAAECLLQ-XGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHH-----STTCTH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 6789999999765 466663 34566666555 79999998766665543
No 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=61.06 E-value=29 Score=24.07 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.+ .|.+| ....+.+..++ -+|+.++|+...++++..
T Consensus 67 ~~A~~~~~~a~~~-----~~~~~---~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 67 QLALKDCEECIQL-----EPTFI---KGYTRKAAALE-AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCch---HHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 5688888888865 34443 34455555554 479999998887776643
No 103
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=59.54 E-value=27 Score=26.20 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=6.4
Q ss_pred hCChHHHHHHHHHH
Q 025044 186 MNSPERACHLAKQA 199 (258)
Q Consensus 186 ~~~~~~A~~iak~a 199 (258)
+|+.++|+...+++
T Consensus 92 ~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 92 MADYKGAKEAYEKG 105 (164)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 35555544444433
No 104
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.03 E-value=32 Score=24.31 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++.-.
T Consensus 55 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 55 PEAIADCNKAIEK-----DPNFV---RAYIRKATAQIA-VKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHH-HhCHHHHHHHHHHHHHhC
Confidence 5688899998865 34544 344555555544 799999998888877654
No 105
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=58.34 E-value=86 Score=26.66 Aligned_cols=31 Identities=6% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVEL 38 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L 38 (258)
+..++.+..+.|+|++++.++++++..+|+.
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcch
Confidence 4556666666777777777777666655543
No 106
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=58.30 E-value=29 Score=26.21 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|..+|++|+++ .|.|| ....+.+..|+ -+|+.++|+...+++..
T Consensus 22 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~-~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 22 DGAIRAYKKVLKA-----DPNNV---ETLLKLGKTYM-DIGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHH-HCCCHHHHHHHHHHHHh
Confidence 6788899998855 45554 23334444444 46889888887777644
No 107
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=58.05 E-value=1e+02 Score=27.51 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIG 55 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~ 55 (258)
+..++.+..+.|+|++++.++.+++..+|. +..=.+-+..+|....+
T Consensus 203 ~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 445666777777777777777777776655 33444445555554333
No 108
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.95 E-value=29 Score=29.16 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|..+|++|+++... +. +|...+.+++-.-..|.-+|++++|+...++|+.-
T Consensus 54 ~~A~~~~~~al~~~~~-~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKK-AG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHHHHHHHHH-TT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6799999999999853 32 55555666666666677789999999988887654
No 109
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=57.44 E-value=42 Score=23.34 Aligned_cols=48 Identities=15% Similarity=-0.000 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
+.|...|++|+.+ .|.++ ....+.+..|.. +|+.++|+...++++...
T Consensus 36 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 36 DAALPHLRAALDF-----DPTYS---VAWKWLGKTLQG-QGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCcH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 5688888888864 34443 234555555554 799999999888777654
No 110
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=57.16 E-value=22 Score=30.31 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh--Hhh--hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSS--IEQ--KEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~--ieq--k~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|+||.|-|.=|....|...-.-|.|.|.+.. ... +.+..+ .+-++-.++.+++|..+.+..+.-||..+
T Consensus 127 P~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~-----~isEDe~k~~e~eiQklTd~~i~~iD~~l 199 (209)
T 4gfq_A 127 PALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAG-----EITEDDLRGYTEDIQKETDKYIAKVDEIA 199 (209)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999888998888743 111 100000 01133445666667777666666666543
No 111
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=56.78 E-value=86 Score=26.19 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.+.|...|++|+... .++|.++ ..+-.+|..|+.. .|+.+.|..+.+++.+
T Consensus 219 ~~~A~~~~~~al~~~--~l~p~~~--~~l~~~~~~~~~~-~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 219 DNNTRVLFERVLTSG--SLPPEKS--GEIWARFLAFESN-IGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHHHSS--SSCGGGC--HHHHHHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCHHHH--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 367899999987532 3555432 3456777777766 6999999876666554
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=56.52 E-value=55 Score=23.86 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
+.|..+|++|+.+ .|.+|. ..+|.+..|+. +|++++|+...++++.-.
T Consensus 69 ~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 69 EQALQSYSYGALM-----DINEPR---FPFHAAECHLQ-LGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHH-----CTTCTH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCcH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHhC
Confidence 6689999998764 466663 33556665554 799999998877776544
No 113
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=56.46 E-value=46 Score=22.94 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 226 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLr 226 (258)
+.|...|++|+++ .|.+|. ...+.+..| .-+|+.++|+...++|+.-+-.. ....-...+.++|+
T Consensus 24 ~~A~~~~~~al~~-----~p~~~~---a~~~lg~~~-~~~g~~~~A~~~~~~al~l~~~~------~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 24 SRALALFEELVET-----DPDYVG---TYYHLGKLY-ERLDRTDDAIDTYAQGIEVAREE------GTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHHHH-----STTCTH---HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHhhhhcC------CchhHHHHHHHHHH
Confidence 6688888888765 344443 445555554 44799999999888887665322 11233455566666
Q ss_pred hhHhhhh
Q 025044 227 DNLTLWT 233 (258)
Q Consensus 227 dNl~lW~ 233 (258)
..=..|.
T Consensus 89 ~~~~~~~ 95 (100)
T 3ma5_A 89 KAEGLEH 95 (100)
T ss_dssp HHHTTC-
T ss_pred Hcccccc
Confidence 5544443
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=56.24 E-value=28 Score=26.17 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDVEL 38 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L 38 (258)
...+|++..+.|+|+.++.+++++++.+|.-
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4678999999999999999999999887763
No 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=56.20 E-value=34 Score=22.94 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
+.|...|++|+.+ .|.+| ....+.+..++ -+|+.++|+...++++
T Consensus 55 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~-~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 55 QKAYEDGCKTVDL-----KPDWG---KGYSRKAAALE-FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 5678888888765 34444 34456665544 4799999988766654
No 116
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=56.17 E-value=77 Score=25.45 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHhhh---------hhhhhHHHHHHHhHh
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVEL--TVEERNLLSVGYKNV---------IGARRASWRILSSIE 68 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L--s~eERnLlsvAyKn~---------i~~~R~s~R~l~~ie 68 (258)
..+|.+..+.|+|++++..+++++...|.- ..+-...+..+|.+. .+....|...+..+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 678999999999999999999999876653 456677777788654 255566666665443
No 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=55.72 E-value=61 Score=24.10 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
+..++.+..+.|+|++++.++.+++..+|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p 42 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAP 42 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444444445555555555555544433
No 118
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=55.21 E-value=43 Score=22.81 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.. .|.+| ....+.+..++. .|+.++|+....+++.
T Consensus 29 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 29 EAAVHFYGKAIEL-----NPANA---VYFCNRAAAYSK-LGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHH-hhchHHHHHHHHHHHh
Confidence 3455566665543 22222 223334444333 5677776666666554
No 119
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=54.78 E-value=44 Score=22.74 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.+ .|.+| ....+.+..++ -+|+.++|+...++++..
T Consensus 63 ~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 63 AGAVQDCERAICI-----DPAYS---KAYGRMGLALS-SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CccCH---HHHHHHHHHHH-HhCCHHHHHHHHHHHHhc
Confidence 5688888888764 34443 23445555544 479999999887777653
No 120
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=54.62 E-value=14 Score=33.10 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhc--------CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAE--------LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~--------L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+.... ....+|....+.+|.+..|+. +|+.++|+..+++|+.
T Consensus 240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 56888899998876431 111567778888899888775 7999999998888864
No 121
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=53.72 E-value=47 Score=22.17 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.. .|.+| ....+.+..++. .|+.++|+...++++..
T Consensus 21 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 21 DDALQCYSEAIKL-----DPHNH---VLYSNRSAAYAK-KGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCcH---HHHHHHHHHHHh-hccHHHHHHHHHHHHHh
Confidence 5678888888754 34443 244555555554 79999999988887654
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=53.60 E-value=41 Score=24.34 Aligned_cols=47 Identities=4% Similarity=-0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++..
T Consensus 64 ~~A~~~~~~a~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 64 GYALGDATRAIEL-----DKKYI---KGYYRRAASNMA-LGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHHH-hccHHHHHHHHHHHHHh
Confidence 5688888888865 34443 344555555444 79999999888877653
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=52.60 E-value=64 Score=23.47 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
+..+|....+.|+|++++.++++++..+|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p 49 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDH 49 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCC
Confidence 34455555556666666666666655444
No 124
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.39 E-value=46 Score=23.52 Aligned_cols=46 Identities=9% Similarity=-0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+ .|.+| ....+.+..++. +|+.++|+...++++.
T Consensus 82 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 82 DKAETEASKAIEK-----DGGDV---KALYRRSQALEK-LGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHH-----TSCCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----CccCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 5688888888765 34443 334555555554 7999999887776654
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=51.50 E-value=45 Score=24.98 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+++ .|.||- ...+.+..| .-+|+.++|+..-++|+.
T Consensus 48 ~~A~~~~~~al~~-----~p~~~~---a~~~lg~~~-~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 48 DLAKKYICTYINV-----QERDPK---AHRFLGLLY-ELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHHHH-----CTTCHH---HHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHH-HHcCchHHHHHHHHHHHH
Confidence 6688888888755 455552 334444444 447999999887776654
No 126
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=51.04 E-value=33 Score=28.54 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh-----HhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSS-----IEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~-----ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|+||.|-|.=|....|...-..|.+.|.+.. +...++ .+ .+-++-.++.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K-~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1dd5_A 103 PSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQK-EG-----LIPEDDAKRLENEIQKLTDEFIEKLDEVF 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999888999888742 111110 00 01234445566666666666666666543
No 127
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=50.83 E-value=32 Score=19.93 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025044 81 KRIKEYRQKVEAELSKISTDIMQVID 106 (258)
Q Consensus 81 ~~i~~yk~kie~EL~~~C~eii~lid 106 (258)
+.++.||.+|.+.|..+.+.|-.++-
T Consensus 4 krlrkfrnkikeklkkigqkiqgllp 29 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQGLLP 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45778999999999999998877664
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=50.80 E-value=37 Score=26.14 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
-+.|..+|++|+.+ .|.+|. ...|.++.|+. +|++++|+..-++|+.
T Consensus 86 ~~~Ai~~~~~al~l-----~P~~~~---~~~~lg~~~~~-lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 86 FQQAADLYAVAFAL-----GKNDYT---PVFHTGQCQLR-LKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHHH-----SSSCCH---HHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-----CCCCcH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 36799999999855 466663 34566666554 7999999886666554
No 129
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=50.08 E-value=15 Score=27.30 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=38.7
Q ss_pred CccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHH----HhhhHHHHH
Q 025044 116 GESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLG----LALNFSVFY 182 (258)
Q Consensus 116 ~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLg----L~LN~SVF~ 182 (258)
+.+.+|+ .|+---|+-.+...-+ .-+..+.+.++.|++-- +..|.||..|+ +.-+|++|+
T Consensus 4 ~~~~~~~---~~~~~~~Ld~vs~~f~--~~a~~~~~~l~~Al~~L--~~~psNPa~LAe~Qa~lseynl~R 67 (92)
T 2g0u_A 4 PPTPLLA---DYEWSGYLTGIGRAFD--DGVKDLNKQLQDAQANL--TKNPSDPTALANYQMIMSEYNLYR 67 (92)
T ss_dssp CCCCCTT---SSSSTHHHHHHHGGGC--TTTHHHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHh---cCcccchHHHHHHHHH--HHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4466776 4455557766654322 22455666777777554 36899999998 666777764
No 130
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=49.74 E-value=29 Score=27.92 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHH--hcCCCCCcchH-HHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHH
Q 025044 147 DLSMKAYQAASTTAE--AELSPTHPIRL-GLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQ 223 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~--~~L~pt~pirL-gL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilq 223 (258)
+.|..+|.+|+++-. -.+.|.++--+ .-..|-++-+ .-+|+.++|+.--++|+.-.= -+-..+++...+.+
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL-~~lgr~eEAl~~y~kAlel~p-----~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALAL-DGLGRGAEAMPEFKKVVEMIE-----ERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH-----HCCSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHH-HHCCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHH
Confidence 568899999998732 24566554211 0012333332 248999999876555544321 12234556666666
Q ss_pred HHHhhHh
Q 025044 224 LLRDNLT 230 (258)
Q Consensus 224 LLrdNl~ 230 (258)
.+.+.+.
T Consensus 148 ~~~~~~~ 154 (159)
T 2hr2_A 148 VAIDRIA 154 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=49.73 E-value=85 Score=24.00 Aligned_cols=57 Identities=12% Similarity=-0.026 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRIL 64 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l 64 (258)
+-+..++.+..+.|||++++.++++++..+|. +.+=...|..+|-. .+....|...+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~-~g~~~~Ai~~~ 93 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQI-KEQFQQAADLY 93 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-HccHHHHHHHH
Confidence 44556777777778888888888777776554 33444445555532 23344444433
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=49.59 E-value=51 Score=23.81 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++|+.+ .|.+ ..+..+.+..++. +|+.++|+...++++..
T Consensus 30 ~~A~~~~~~al~~-----~~~~---~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 30 ENAIKFYSQAIEL-----NPSN---AIYYGNRSLAYLR-TECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 5678888888765 2333 3445555555554 79999999988887654
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=49.34 E-value=57 Score=21.90 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.. .|.+| ....+.+..++. .|+.++|+...++++.
T Consensus 26 ~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 26 DEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYK-QGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CcCcH---HHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 5577777777654 23333 233444444444 6888888887777654
No 134
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=48.90 E-value=35 Score=28.39 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh-----HhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSS-----IEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~-----ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|+||.|-|.=|....|...-..|.+.|.+.. +...++ .+ .+-++-.++.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K-~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1ise_A 103 PPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLK-DK-----EISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HS-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999888999888832 111111 00 01233444566666666666666666543
No 135
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=48.79 E-value=1.6e+02 Score=26.96 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
-+..+|.+..+.|+|++++.++++.++.+|.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 55 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPG 55 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4567788888889999999999998887664
No 136
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=48.59 E-value=68 Score=22.59 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
..|..-|++|+......-. ..+.+-.+..++++-+| .+|+.++|+...++|+.
T Consensus 22 ~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 22 YHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHh
Confidence 5688889999887642211 12334444455555444 58999999998888764
No 137
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=47.97 E-value=30 Score=26.19 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHhhhhhh----------------hhHHHHHHHhH
Q 025044 19 ERYDEMVDAMKKVANLD-VELTVEERNLLSVGYKNVIGA----------------RRASWRILSSI 67 (258)
Q Consensus 19 eRy~Dm~~~mk~~i~~~-~~Ls~eERnLlsvAyKn~i~~----------------~R~s~R~l~~i 67 (258)
++|+.++..++.+-..+ ..++.+++-.|---||..... +..||..+..+
T Consensus 10 ~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gm 75 (106)
T 2wh5_A 10 KQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKM 75 (106)
T ss_dssp HHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCC
Confidence 57888898888865433 268999999998888887532 56778777543
No 138
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=47.91 E-value=36 Score=28.26 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh-----HhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSS-----IEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~-----ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|+||.|-|.=|....|...-..|.+.|.+.. +...++ .+ .+-++-.++.+++|..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K-~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1is1_A 103 PPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLK-DK-----EISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998888899888832 111111 00 01234444566666666666666666543
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=47.78 E-value=58 Score=21.50 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
..++.+..+.|+|++++.++++++...+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 37 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDP 37 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 3445555555666666666666555443
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=47.70 E-value=61 Score=21.74 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++++.+ .|.+| ....+.+..++. .|+.++|....++++..
T Consensus 60 ~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 60 DEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYK-QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCccH---HHHHHHHHHHHH-hcCHHHHHHHHHHHHHh
Confidence 5678888888754 34443 334556666555 69999998877776643
No 141
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=47.70 E-value=1.3e+02 Score=25.51 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYK 51 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyK 51 (258)
-+..++.+.-+.++++++..+.+.++..+|. +.+-...+..+|.
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHH
Confidence 4567788888899999999999888877665 3444555555543
No 142
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=47.54 E-value=35 Score=28.40 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
|+||.|-|.=|....|...-..|.+.|.+..-..+ ..+...+...+-++-.++.+++|..+.+..+.-||..+
T Consensus 104 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~-~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 176 (185)
T 1eh1_A 104 PPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALD-KLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998889998888421100 00000000011234445666777777777777666543
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=47.37 E-value=29 Score=31.70 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCCC--------CCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSP--------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~p--------t~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+... .+. .+|.+..+.+|.+..|+. +|+.++|+...++|+.
T Consensus 285 ~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 285 MQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Confidence 5688888888876521 110 134667788888888777 6999999988887743
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=47.20 E-value=53 Score=25.18 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+ .|.+| ....|.+..|+. +|+.++|+...++++.
T Consensus 54 ~~A~~~~~~al~~-----~~~~~---~~~~~lg~~~~~-~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 54 TEAEKAFTRSINR-----DKHLA---VAYFQRGMLYYQ-TEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----Cccch---HHHHHHHHHHHH-cccHHHHHHHHHHHHH
Confidence 6688899998865 24443 445666666655 7999999998888876
No 145
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=47.14 E-value=55 Score=27.55 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcch-HHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIR-LGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pir-LgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
.+.|...|++|+++... . .+|.. .....|.+.+|.. +|+.++|+...++|+.-
T Consensus 131 ~~~A~~~~~~Al~~~~~-~--~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFEN-E--ERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-C--CChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 36799999999999854 2 22333 3345566666655 79999999888877664
No 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=47.09 E-value=54 Score=22.32 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGY 50 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAy 50 (258)
-+..+|.+..+.|+|++++.++++++...+ +.+-+..+..++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~ 122 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 355778888899999999999999988765 454444444433
No 147
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=46.43 E-value=40 Score=28.03 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh-----HhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025044 36 VELTVEERNLLSVGYKNVIGARRASWRILSS-----IEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEH 108 (258)
Q Consensus 36 ~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~-----ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~ 108 (258)
|+||.|-|.=|....|...-..|.+.|.+.. +...++ .+ .+-++-.++.+++|..+.+..+.-||..
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K-~~-----~iseD~~k~~e~~iQkltd~~i~~id~~ 174 (185)
T 1wqg_A 103 PQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRK-EG-----EAGEDEVGRAEKDLDKTTHQYVTQIDEL 174 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998888889888732 111110 00 0113344455566666666666666553
No 148
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=46.17 E-value=1.7e+02 Score=26.47 Aligned_cols=161 Identities=14% Similarity=0.039 Sum_probs=74.3
Q ss_pred HhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh-hHHHHHHHhH-hhhhhhhcchhHHHHHHHHHHHHHHHH
Q 025044 17 QAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGAR-RASWRILSSI-EQKEEARGNELNVKRIKEYRQKVEAEL 94 (258)
Q Consensus 17 qaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~-R~s~R~l~~i-eqk~~~~~~~~~~~~i~~yk~kie~EL 94 (258)
..+++++.+..+.++... .+-..+-...+..+|-. .+.. ..|...+... +..+.. ......+-.-|...
T Consensus 80 ~~~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~----- 150 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEPEL--VEAWNQLGEVYWKK----- 150 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc-----
Confidence 345577777777776543 33556666666666654 3555 5666666432 222210 01111111111110
Q ss_pred HHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Q 025044 95 SKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGL 174 (258)
Q Consensus 95 ~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL 174 (258)
.--.+.+......|--. +. ...+...|..|+.+.. .....+..-.+.|...|++|+++ .|.+|. .
T Consensus 151 -g~~~~A~~~~~~al~~~---p~--~~~~~~lg~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~ 215 (474)
T 4abn_A 151 -GDVTSAHTCFSGALTHC---KN--KVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQM-----DVLDGR---S 215 (474)
T ss_dssp -TCHHHHHHHHHHHHTTC---CC--HHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHHHHH-----CTTCHH---H
T ss_pred -CCHHHHHHHHHHHHhhC---CC--HHHHHHHHHHHHHhcc-CChhhhhhhHHHHHHHHHHHHHh-----CCCCHH---H
Confidence 11122333333332111 22 2344455666655422 11122233356788999998865 355552 2
Q ss_pred hhhHHHHHHHh---h----CChHHHHHHHHHHHH
Q 025044 175 ALNFSVFYYEI---M----NSPERACHLAKQAFD 201 (258)
Q Consensus 175 ~LN~SVF~yEi---~----~~~~~A~~iak~afd 201 (258)
..|.+..|... . |+.++|+...++|+.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 23333333331 1 556777666665544
No 149
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=46.07 E-value=54 Score=25.81 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 5 RENFVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 5 re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
-+.++..+...-+.|+|++++.++.+++..+|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 35 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI 35 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 45678888888899999999999999987654
No 150
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=45.78 E-value=1.6e+02 Score=26.17 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh-hhHHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGA-RRASWRILS 65 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~-~R~s~R~l~ 65 (258)
+-+.+++.+..+.|+|++++.+..+++..+|... +=.+.+..+|... +. ...+...+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~-~a~~~~g~~l~~~-g~d~~eAl~~~~ 156 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANY-TVWHFRRVLLKSL-QKDLHEEMNYIT 156 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH-HHHHHHHHHHHHc-ccCHHHHHHHHH
Confidence 4456788888889999999999999999887643 3344445555443 32 455555553
No 151
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=45.72 E-value=25 Score=32.23 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 207 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 207 (258)
.+.|...|++|+.. +| ...+-+.|.-|..+..|+.+.|.+.+.++|+.|+..+
T Consensus 62 ~~~a~~~~~ral~~--------~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~ 114 (530)
T 2ooe_A 62 YDKVEKLFQRCLMK--------VL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI 114 (530)
T ss_dssp HHHHHHHHHHHTTT--------CC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--------CC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC
Confidence 36688888888632 23 2457888888999999999999999999999998754
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=45.61 E-value=18 Score=31.61 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhcCC--------CCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELS--------PTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~--------pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
+.|..+|++|+.+... .+ ..+|.+..+.+|.+..|+. +|+.++|+...++|+
T Consensus 164 ~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 164 KQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4677777777755421 10 0124445666777766555 577777777766664
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=44.37 E-value=38 Score=25.24 Aligned_cols=58 Identities=5% Similarity=-0.125 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..+|.+..+.|+|++++.+..+++..+|. +..=...+..+|.. .+....|...+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~-~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIA-AWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHH-HhcHHHHHHHHHH
Confidence 3556788888899999999999999988765 34455566666654 3666667666653
No 154
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=43.82 E-value=1e+02 Score=23.23 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQ 69 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieq 69 (258)
-+..++.+..+.|+|++++.++.+++...|.. ..-...+..+|-...+....+...+....+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 45678888889999999999999999876653 444455555554432556666666654433
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=43.11 E-value=48 Score=30.52 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=7.5
Q ss_pred hCChHHHHHHHHHHH
Q 025044 186 MNSPERACHLAKQAF 200 (258)
Q Consensus 186 ~~~~~~A~~iak~af 200 (258)
+|+.++|+...++|+
T Consensus 87 ~g~~~eA~~~~~~al 101 (477)
T 1wao_1 87 LGKFRAALRDYETVV 101 (477)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555444443
No 156
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=42.95 E-value=76 Score=22.98 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (258)
+.|...|++++.. .|.+| ....+.+..++. .|+.++|+...++++..
T Consensus 93 ~~A~~~~~~~~~~-----~~~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 93 DLAVPLLIKVAEA-----NPINF---NVRFRLGVALDN-LGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CcHhH---HHHHHHHHHHHH-cCcHHHHHHHHHHHHhc
Confidence 5677788887755 33343 334555555444 79999999988887654
No 157
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=42.77 E-value=86 Score=25.95 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025044 35 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 109 (258)
Q Consensus 35 ~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lid~~L 109 (258)
-|+||.|-|.=|....|...-..|.+.|.+..-..+. .+... ++-++-.++.++++..+.+..+.-||..+
T Consensus 104 iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~---kiseD~~k~~e~~iQkltd~~i~~id~~~ 174 (184)
T 1ge9_A 104 LPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEM-IEELE---GISEDEKKRALERLQKLTDKYIDEINKLM 174 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHST---TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999998884311111 01000 02244555667777777777777776543
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=41.08 E-value=60 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCC
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVEL 38 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L 38 (258)
+-+..++.+..+.|+|++++.++.+++..+|..
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 345567777778888888888888888776654
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=40.32 E-value=48 Score=21.35 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..++.+..+.++|++++.++++.+...|.- ..=...+..+|-. .+....|...+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~ 68 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYK-QGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 45678888999999999999999999876653 4444555666543 4555666666644
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=40.11 E-value=1e+02 Score=22.06 Aligned_cols=58 Identities=16% Similarity=0.004 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILS 65 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~ 65 (258)
...+.++...-+.|+|++++..+++++..+|. +.+=...+..+|-. .+....|...+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~-~g~~~~A~~~~~ 75 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAE-NEKDGLAIIALN 75 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 35677888888999999999999999988776 45555666766653 355555555554
No 161
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=40.10 E-value=82 Score=26.22 Aligned_cols=53 Identities=9% Similarity=-0.231 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHh-hCChHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEI-MNSPERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi-~~~~~~A~~iak~afd~ 202 (258)
+.|..+|++|+++... + -+|...+-+++----.|.- +|++++|+..-++|+.-
T Consensus 94 ~~A~~~~~~Al~l~~~-~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTH-R--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-c--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 6799999999999853 2 2444444444433344555 59999999888887654
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=40.00 E-value=47 Score=27.84 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=28.1
Q ss_pred HHHHHHHHHHh--cCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025044 152 AYQAASTTAEA--ELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI 204 (258)
Q Consensus 152 aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (258)
-|++|....+. .+.|.++ ....+.+..|+ -+|+.++|+...++|+.-.-
T Consensus 53 ~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 53 QPEQALADCRRALELDGQSV---KAHFFLGQCQL-EMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp CHHHHHHHHHHHTTSCTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 35566655543 2334443 34445555444 46888888887777776543
No 163
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=39.77 E-value=44 Score=22.34 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
+.+|...-+.|+|++++..+++++..+|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 32 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV 32 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45667777778888888888887766554
No 164
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=38.48 E-value=82 Score=24.84 Aligned_cols=16 Identities=6% Similarity=-0.172 Sum_probs=10.8
Q ss_pred hCChHHHHHHHHHHHH
Q 025044 186 MNSPERACHLAKQAFD 201 (258)
Q Consensus 186 ~~~~~~A~~iak~afd 201 (258)
+|+.++|+...++++.
T Consensus 124 ~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 6777777776666654
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=37.29 E-value=46 Score=22.38 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
+.+..++.+....|+|++++.+..+++...|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 35 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP 35 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455566666667777777777777665543
No 166
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=37.28 E-value=66 Score=24.62 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhcC--------CCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAEL--------SPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 200 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L--------~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (258)
+.|...|++|+++...+- ...+|-......|.+..|+. +|+.++|+...++|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Confidence 668889999886542100 00334445666777777666 699999988766654
No 167
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=36.61 E-value=57 Score=27.37 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 146 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
.+.|...|++|+.+. |.+ ..+.++++.|+.. +|+.++|+.+-++|+.
T Consensus 185 ~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~-~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-----GDI---PEYVLAYIDYLSH-LNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 367889999998753 344 4566888888755 6999998876666654
No 168
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=36.31 E-value=1.6e+02 Score=23.46 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhh
Q 025044 8 FVYIAKLAEQAERYDEMVDAMKKVAN 33 (258)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mk~~i~ 33 (258)
+..++.+..+.++|++++.++++.++
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~ 34 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD 34 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 169
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=36.19 E-value=1.3e+02 Score=22.27 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGY 50 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAy 50 (258)
-+..++.+..+.|+|++++.++++++..+|. +.+-...+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 65 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACR 65 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 3455677777777777777777777766554 333344445444
No 170
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=34.48 E-value=1e+02 Score=20.62 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++++.. .|.+| ....+.+..+ --.|+.++|+...++++.
T Consensus 52 ~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~-~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 52 DEAIEYYQKALEL-----DPRSA---EAWYNLGNAY-YKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHH-HTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCch---HHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 5677778777654 23333 2233444443 446899998888777665
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=33.66 E-value=1.2e+02 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q 025044 9 VYIAKLAEQAERYDEMVDAMKKVANLDVE 37 (258)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 37 (258)
..+|...-+.|+|++++..+++++...|.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 34 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN 34 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Confidence 44555555566666666666665554443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=33.46 E-value=86 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=10.3
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcC
Q 025044 11 IAKLAEQAERYDEMVDAMKKVANLD 35 (258)
Q Consensus 11 ~AklaeqaeRy~Dm~~~mk~~i~~~ 35 (258)
++.+..+.|+|++++.++++++..+
T Consensus 57 lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 57 LGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3333444444444444444444333
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=32.51 E-value=1e+02 Score=23.58 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
.-+..+|.+..+.|+|++++.+..+++...|. +..=...+..+|- ..+....|...+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANM-YFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH-HcccHHHHHHHHHH
Confidence 34557888888999999999999999987664 3444556666664 34556666666654
No 174
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=32.21 E-value=97 Score=24.11 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+. +.|. ......+.+..|+. +|+.++|+...++++.
T Consensus 59 ~~A~~~~~~al~-----~~p~---~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 59 KEAADYFDIAIK-----KNYN---LANAYIGKSAAYRD-MKNNQEYIATLTEGIK 104 (228)
T ss_dssp HHHHHHHHHHHH-----TTCS---HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hCcc---hHHHHHHHHHHHHH-cccHHHHHHHHHHHHH
Confidence 568888888873 3344 34455566665555 6999999988887765
No 175
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.48 E-value=1.2e+02 Score=25.17 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHhCChHHHHHHHHHHhhcCCCC
Q 025044 6 ENFVYIAKLAEQAERYDEMVDAMKKVANLDVEL 38 (258)
Q Consensus 6 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L 38 (258)
+-...+|.+..+.|||++++..+.+++..+|..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 345667788888888888888888888877765
No 176
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=30.90 E-value=1.4e+02 Score=22.17 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCCh--HHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSP--ERACHLAKQAFDE 202 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~--~~A~~iak~afd~ 202 (258)
+.|..+|++|+.+. |.+| .+..+.+..+|.-.|+. ++|+...++++..
T Consensus 61 ~~A~~~~~~al~~~-----p~~~---~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 61 SNSLLAYRQALQLR-----GENA---ELYAALATVLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp HHHHHHHHHHHHHH-----CSCH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-----CCCH---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 67899999998764 4444 34556666656567887 9998887777653
No 177
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=30.65 E-value=1e+02 Score=23.72 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHhhhh
Q 025044 19 ERYDEMVDAMKKVANLDV-ELTVEERNLLSVGYKNVI 54 (258)
Q Consensus 19 eRy~Dm~~~mk~~i~~~~-~Ls~eERnLlsvAyKn~i 54 (258)
++|+.++.+++.+-..++ .++.+++-.|=--||...
T Consensus 26 ~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT 62 (119)
T 3flv_A 26 TRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQAT 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 579999999998876554 579999998888888766
No 178
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=29.79 E-value=66 Score=25.76 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=53.3
Q ss_pred ccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCc---chHHHhhhHHHHH----HHhhCChHHHHHHHHH
Q 025044 126 KGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHP---IRLGLALNFSVFY----YEIMNSPERACHLAKQ 198 (258)
Q Consensus 126 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---irLgL~LN~SVF~----yEi~~~~~~A~~iak~ 198 (258)
.|.-+.=+..+..+.+..+..+.|..+|++|+.+ .|.++ ..||.++.---|+ -+-.++.++|+.
T Consensus 42 ~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~---- 112 (158)
T 1zu2_A 42 WGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ---- 112 (158)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHH----
Confidence 3445544555555655566788999999999865 45555 3466555322221 111245666665
Q ss_pred HHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhc
Q 025044 199 AFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 234 (258)
Q Consensus 199 afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~lW~~ 234 (258)
+|+.|+.. + .+ +.+...-+++...+-.+|..
T Consensus 113 ~~~kAl~l-~---P~-~~~y~~al~~~~ka~el~~~ 143 (158)
T 1zu2_A 113 FFQQAVDE-Q---PD-NTHYLKSLEMTAKAPQLHAE 143 (158)
T ss_dssp HHHHHHHH-C---TT-CHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHh-C---CC-CHHHHHHHHHHHhCHhccCc
Confidence 55555532 2 11 23445556667777777764
No 179
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=29.18 E-value=2e+02 Score=22.30 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=24.6
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCC
Q 025044 11 IAKLAEQAERYDEMVDAMKKVANLDVEL 38 (258)
Q Consensus 11 ~AklaeqaeRy~Dm~~~mk~~i~~~~~L 38 (258)
++.+..+.|+|++++.+++++++.+|.-
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 7888889999999999999999887753
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=28.29 E-value=48 Score=28.78 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc--------------chHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHP--------------IRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~p--------------irLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|++|+.+. |.++ ++..+.+|.+..|+. +|+.++|+...++|+.
T Consensus 196 ~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 196 EEAMQQYEMAIAYM-----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHHHHS-----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 181
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=27.88 E-value=1.8e+02 Score=27.97 Aligned_cols=54 Identities=15% Similarity=0.035 Sum_probs=35.9
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCC-cchHHHhhhHHHHHHHhhCC
Q 025044 133 LAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTH-PIRLGLALNFSVFYYEIMNS 188 (258)
Q Consensus 133 laE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~-pirLgL~LN~SVF~yEi~~~ 188 (258)
.||....+.-.+++++|.++|++|++..++ +..|+ |--.-.+||-| -.||..||
T Consensus 435 k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k-~~~tdd~~~v~~~~~~a-k~yE~aGD 489 (526)
T 2wb7_A 435 KAKGMNNENAIEYAQGAIDEYKAAINDLQK-AAQQDDYQMFLNYLNAA-KKHEMAGD 489 (526)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-HTTCCSHHHHHHHHHHH-HHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHh-hhccCCHHHHHHHHHHh-hhhhhccH
Confidence 356667777778899999999999999964 55444 43333444433 33665553
No 182
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=27.87 E-value=1.7e+02 Score=21.18 Aligned_cols=75 Identities=8% Similarity=0.126 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhh---hhcchhHHHHHHHHHHHHHHHHHHH
Q 025044 22 DEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE---ARGNELNVKRIKEYRQKVEAELSKI 97 (258)
Q Consensus 22 ~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~---~~~~~~~~~~i~~yk~kie~EL~~~ 97 (258)
.....-++..+..-+.++-++|+-+.......+..-..=++.+. +|-+.- ..........++.||..+..+|..-
T Consensus 11 ~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMe-lE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~ 88 (97)
T 3onj_A 11 KTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMD-VEVNNSIGDASERATYKAKLREWKKTIQSDIKRP 88 (97)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444678889999887777777776554444442 222211 0111245567888988877766553
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=27.22 E-value=1e+02 Score=28.33 Aligned_cols=11 Identities=18% Similarity=-0.200 Sum_probs=4.3
Q ss_pred CChHHHHHHHH
Q 025044 187 NSPERACHLAK 197 (258)
Q Consensus 187 ~~~~~A~~iak 197 (258)
|+.++|+...+
T Consensus 54 g~~~~A~~~~~ 64 (477)
T 1wao_1 54 ECYGYALGDAT 64 (477)
T ss_dssp TCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 34444433333
No 184
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=26.31 E-value=4.3e+02 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.9
Q ss_pred hHHHHHHHhhCChHHHHHHHHHH
Q 025044 177 NFSVFYYEIMNSPERACHLAKQA 199 (258)
Q Consensus 177 N~SVF~yEi~~~~~~A~~iak~a 199 (258)
.-.|-+|+-.|..++|+.+..+|
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567799999999999999988
No 185
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=26.19 E-value=75 Score=25.87 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC----CcchHHHhhhHHHHHHHhhCChHHHHHHHHHH
Q 025044 144 DVADLSMKAYQAASTTAEAELSPT----HPIRLGLALNFSVFYYEIMNSPERACHLAKQA 199 (258)
Q Consensus 144 ~~~~~a~~aY~~A~~~a~~~L~pt----~pirLgL~LN~SVF~yEi~~~~~~A~~iak~a 199 (258)
...++-.+.|++|.. .+||+ ..-+.-|=++|+.| .++ +|+++|.++=+.|
T Consensus 33 ~~l~rlrd~YerAia----~~Pp~k~~~wrrYI~LWIrYA~~-~ei-~D~d~aR~vy~~a 86 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIE----ALPPDKYGQNESFARIQVRFAEL-KAI-QEPDDARDYFQMA 86 (161)
T ss_dssp HHHHHHHHHHHHHHH----HSCGGGGTTCHHHHHHHHHHHHH-HHH-HCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----cCCccccccHHHHHHHHHHHHHH-HHh-cCHHHHHHHHHHH
Confidence 566788899998863 46665 33455688999998 455 8999888777766
No 186
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.76 E-value=26 Score=33.36 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=30.4
Q ss_pred ccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhH------HHHHHH
Q 025044 126 KGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNF------SVFYYE 184 (258)
Q Consensus 126 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~------SVF~yE 184 (258)
-||..||...+ ..|...|.+|..+.=.+= ..-..||+.-.+ +||||-
T Consensus 158 LGDL~RY~~~~----------~~A~~~Y~~A~~~~P~~G--~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 158 LGDIARYRNQT----------SQAESYYRHAAQLVPSNG--QPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHCTTBS--HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHHHHHHHHHhCCCCC--chHHHHHHHHhcccccHHHHHHHH
Confidence 69999999764 579999999986641111 111456655554 566664
No 187
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=24.74 E-value=2.9e+02 Score=22.57 Aligned_cols=175 Identities=9% Similarity=-0.090 Sum_probs=85.5
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHH------HHHHhhhhhhhhHHHHHHHhHhh-hhhhhcchh----
Q 025044 10 YIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLL------SVGYKNVIGARRASWRILSSIEQ-KEEARGNEL---- 78 (258)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLl------svAyKn~i~~~R~s~R~l~~ieq-k~~~~~~~~---- 78 (258)
..+...-..++|+++..+++++.... ..+++.+..+ ...|- -.+....|+..+..... ... ..+..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~ 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLT-GIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCC-CSCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 34666667899999999999988743 4455544322 22221 11233445444432211 111 01110
Q ss_pred -HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHH
Q 025044 79 -NVKRIKEYR-QKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAA 156 (258)
Q Consensus 79 -~~~~i~~yk-~kie~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 156 (258)
...+-.-|. ..=-++-......++.+.... |. +....+-.+--.|..|.-+ ++ -+.|...|++|
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~--~~~~~~~~~~nlg~~y~~~-----~~-----y~~A~~~~~~a 222 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL--HD--NEEFDVKVRYNHAKALYLD-----SR-----YEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SC--CHHHHHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--cc--chhHHHHHHHHHHHHHHHH-----hH-----HHHHHHHHHHH
Confidence 011111111 001133444555566655542 22 1111111112233333211 11 36799999999
Q ss_pred HHHHHhcCCCCCcchHHHhhhHHHHHHHhhCC-hHHHHHHHHHHHHHHH
Q 025044 157 STTAEAELSPTHPIRLGLALNFSVFYYEIMNS-PERACHLAKQAFDEAI 204 (258)
Q Consensus 157 ~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~-~~~A~~iak~afd~Ai 204 (258)
++++... .++..++.+++.--..|.-+|+ .++|+...++|+.-+-
T Consensus 223 l~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 223 IEISCRI---NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHT---TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc---CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9999642 2344455555554555566785 5999988777766553
No 188
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=24.18 E-value=72 Score=28.54 Aligned_cols=47 Identities=6% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcch-HHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIR-LGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pir-LgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
++|...|++|+.+. |-. +..-.-|+-|+..-.++++.|....++|+.
T Consensus 221 ekA~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 221 EKAHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 67999999999875 432 556677888877777999998887777765
No 189
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=23.86 E-value=1.3e+02 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=29.1
Q ss_pred hCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhh
Q 025044 18 AERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVI 54 (258)
Q Consensus 18 aeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i 54 (258)
+.+|+.++..++.+-. ..++.+++-.|---||...
T Consensus 11 ~~~F~~A~~~vk~l~~--~~ps~~~~L~LYaLyKQAt 45 (96)
T 2lbb_A 11 ADDFDAAVKYVSNTTT--MMASNDDKLCFYKYYKQAT 45 (96)
T ss_dssp SSTHHHHHHHHHHCCC--SCCCTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHh
Confidence 6889999999988642 5789999998888888875
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.27 E-value=3.6e+02 Score=22.88 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 203 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (258)
..|...|+++...... ...+|..+.+.++-+-.|+. +|+.++|..+-++|..-+
T Consensus 152 ~~A~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 152 KDSLALINDLLREFKK--LDDKPSLVDVHLLESKVYHK-LRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTT--SSCSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHh
Confidence 5688888888877743 34567777777777777666 699999998887776543
No 191
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=22.10 E-value=1.1e+02 Score=25.34 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDV 36 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 36 (258)
.+..+|.+..+.|+|++++.++.+++...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 35 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP 35 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455677777777888888888777776544
No 192
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=21.97 E-value=3.6e+02 Score=22.72 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhcchhHHHHHHHHHHHH
Q 025044 11 IAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKV 90 (258)
Q Consensus 11 ~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~ki 90 (258)
.|+|.+...+|-.||+-+|.-.. +..|..|.=.-||=-+. .++.+. +.+.++..=+..-.+-
T Consensus 100 iarllekiqkyfQ~IEtlK~ql~-----nf~e~RLiYDHYKlKvd----------ELEK~~---KdSeKI~RNQsKLssA 161 (294)
T 3caz_A 100 IARLLEKIQKYRQEIEEIKKEYK-----ETDKYRERYDHYKVKLD----------NLEKKN---KDQERIERNQQKFKDA 161 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH----------HHHHHT---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhHH----------HHHhcc---chHHHHHHhHHHhhhH
Confidence 46777777777777777754221 23344555555554433 233221 1222222222222334
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCccceeheeeccccccchhccccchhhHHHHHHHHHHHHHHHHHHHh
Q 025044 91 EAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEA 162 (258)
Q Consensus 91 e~EL~~~C~eii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 162 (258)
+.--..+|-++|+-.++. -|.|||.++|..+. +=...--|-+|++.|..
T Consensus 162 EtaYkqvcsDiInkMnkl-----------------l~n~~riineaasa------vwstqlqyakaleaaan 210 (294)
T 3caz_A 162 EAAYSSVCADLIQKMETV-----------------WKKHVSIFAEAASA------VWSTQLQYAKALEAAAN 210 (294)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcC
Confidence 455566788888777653 47899999987653 22344558888888854
No 193
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.91 E-value=2.4e+02 Score=20.60 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhh---CChHHHHHHHHHHHHHHHHhhcc---CCcccHHhHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIM---NSPERACHLAKQAFDEAISELDT---LSEESYKDSTL 220 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~---~~~~~A~~iak~afd~Ai~~ld~---l~ee~y~ds~~ 220 (258)
..-+.+|++|+..... +|+ .|=. |++++|+++-++.+..-...+.- =.-+.|..+..
T Consensus 7 ~~ik~~h~~AF~~Is~------------aL~-----~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~ 69 (89)
T 3eab_A 7 ERVRVFHKQAFEYISI------------ALR-----IDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARR 69 (89)
T ss_dssp HHHHHHHHHHHHHHHH------------HHH-----HHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------------HHH-----hhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHH
Confidence 4456778888776643 333 2334 89999999988876654443321 13456888999
Q ss_pred HHHHHHhhHhhh
Q 025044 221 IMQLLRDNLTLW 232 (258)
Q Consensus 221 ilqLLrdNl~lW 232 (258)
+-+-|+.||..=
T Consensus 70 LQ~KM~~nL~~v 81 (89)
T 3eab_A 70 LQAKMMTNLVMA 81 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999753
No 194
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=21.34 E-value=3.8e+02 Score=22.76 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025044 7 NFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSS 66 (258)
Q Consensus 7 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Ls~eERnLlsvAyKn~i~~~R~s~R~l~~ 66 (258)
-+..+|.+..+.|+|++++.++.+++..+|. +..=...+..+|-. .+....|...+..
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~-~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLA-VNDFELARADFQK 255 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 4557888888999999999999999988776 34445556666644 3555556655543
No 195
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=21.09 E-value=2e+02 Score=25.95 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=11.4
Q ss_pred HHHhhCChHHHHHHHHHHHH
Q 025044 182 YYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 182 ~yEi~~~~~~A~~iak~afd 201 (258)
.|...|++++|+.+-.+|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHHHHHH
Confidence 34456777666666555543
No 196
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.00 E-value=2.4e+02 Score=23.50 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025044 147 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 201 (258)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (258)
+.|...|+++++. +|-...+..|.++.+.. +|+.++|...-++|+.
T Consensus 183 ~eA~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 183 QDAYYIFQEMADK--------CSPTLLLLNGQAACHMA-QGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHHHHH--------SCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Done!