Query 025046
Match_columns 258
No_of_seqs 186 out of 811
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 6.2E-81 2.1E-85 593.2 20.1 258 1-258 296-554 (554)
2 3m00_A Aristolochene synthase; 100.0 6.4E-80 2.2E-84 585.8 20.2 257 1-258 292-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 1.2E-79 4E-84 585.0 20.6 257 1-257 294-551 (555)
4 1n1b_A (+)-bornyl diphosphate 100.0 2.1E-75 7.1E-80 557.9 19.5 257 1-257 291-549 (549)
5 2ong_A 4S-limonene synthase; m 100.0 7.4E-75 2.5E-79 554.1 22.0 257 1-257 285-543 (543)
6 3p5p_A Taxadiene synthase; cla 100.0 2E-74 6.8E-79 566.5 20.1 258 1-258 496-756 (764)
7 3sdr_A Alpha-bisabolene syntha 100.0 2.8E-74 9.5E-79 568.8 20.2 258 1-258 555-817 (817)
8 2j5c_A 1,8-cineole synthase; t 100.0 2.9E-74 9.8E-79 551.7 18.3 256 1-257 312-569 (569)
9 3s9v_A Abietadiene synthase, c 100.0 7.8E-74 2.7E-78 563.6 20.8 256 1-257 527-785 (785)
10 1ps1_A Pentalenene synthase; a 100.0 2.8E-47 9.5E-52 344.5 10.4 200 1-208 69-271 (337)
11 1di1_A Aristolochene synthase; 100.0 3.3E-45 1.1E-49 325.6 9.7 192 1-207 65-264 (300)
12 3kb9_A EPI-isozizaene synthase 100.0 5E-44 1.7E-48 329.1 7.6 201 1-207 109-312 (382)
13 3bny_A Aristolochene synthase; 100.0 2.6E-43 8.8E-48 316.4 9.9 192 1-207 79-278 (320)
14 3v1v_A 2-MIB synthase, 2-methy 100.0 2.6E-34 8.9E-39 267.5 11.3 199 2-207 180-390 (433)
15 3pya_A ENT-copalyl diphosphate 100.0 9.9E-35 3.4E-39 282.9 8.3 203 1-257 502-720 (727)
16 1yyq_A Trichodiene synthase; t 99.7 1.1E-18 3.8E-23 159.4 7.3 201 2-227 90-294 (374)
17 3ipi_A Geranyltranstransferase 91.8 0.59 2E-05 40.7 8.3 139 73-226 129-277 (295)
18 3lmd_A Geranylgeranyl pyrophos 90.5 1.3 4.4E-05 39.7 9.3 87 72-163 161-247 (360)
19 3acx_A Dehydrosqualene synthas 88.5 11 0.00038 32.3 13.6 170 8-205 50-231 (293)
20 3rmg_A Octaprenyl-diphosphate 86.8 5.1 0.00017 35.3 10.5 88 71-162 133-220 (334)
21 3oyr_A Trans-isoprenyl diphosp 86.0 6.7 0.00023 34.7 10.9 88 71-163 151-239 (345)
22 3mzv_A Decaprenyl diphosphate 86.0 10 0.00035 33.4 12.1 89 71-163 139-227 (341)
23 2ftz_A Geranyltranstransferase 84.1 8.1 0.00028 33.2 10.3 120 72-205 135-264 (284)
24 1rtr_A Geranyltranstransferase 83.4 3.6 0.00012 35.7 7.8 113 81-205 148-271 (301)
25 3m0g_A Farnesyl diphosphate sy 83.0 3.2 0.00011 36.0 7.3 110 81-205 147-269 (297)
26 3ts7_A Geranyltranstransferase 81.7 7.3 0.00025 34.2 9.1 111 81-204 158-281 (324)
27 3p8l_A Geranyltranstransferase 81.2 6.3 0.00022 34.2 8.5 110 82-205 157-279 (302)
28 1wy0_A Geranylgeranyl pyrophos 81.2 8.2 0.00028 34.0 9.4 88 72-163 138-225 (342)
29 3pko_A Geranylgeranyl pyrophos 79.5 15 0.00051 32.2 10.5 85 72-162 144-230 (334)
30 3p8r_A Geranyltranstransferase 78.7 4.4 0.00015 35.2 6.7 111 82-205 159-282 (302)
31 2h8o_A Geranyltranstransferase 78.6 7.1 0.00024 34.4 8.1 111 81-205 192-315 (335)
32 4f62_A Geranyltranstransferase 78.0 7.2 0.00025 34.1 7.9 110 83-205 153-275 (317)
33 3lom_A Geranyltranstransferase 76.6 11 0.00039 32.8 8.7 112 82-204 159-282 (313)
34 3apz_A Geranyl diphosphate syn 76.6 13 0.00043 32.8 9.2 88 72-163 154-241 (348)
35 3lsn_A Geranyltranstransferase 76.4 7.2 0.00025 33.9 7.4 110 83-204 154-275 (304)
36 4hd1_A Squalene synthase HPNC; 76.4 35 0.0012 29.1 15.8 145 8-187 51-199 (294)
37 4dhd_A Polyprenyl synthetase; 74.6 11 0.00039 33.4 8.3 88 72-162 133-231 (358)
38 3pde_A Farnesyl-diphosphate sy 71.1 17 0.00057 31.7 8.4 109 82-204 156-277 (309)
39 3uca_A Geranyltranstransferase 70.7 14 0.00047 32.4 7.8 112 82-205 181-304 (324)
40 3llw_A Geranyltranstransferase 68.4 12 0.00041 32.6 6.9 112 81-204 159-280 (311)
41 1rqj_A Geranyltranstransferase 68.4 19 0.00065 31.0 8.1 112 81-205 152-276 (299)
42 1wmw_A Geranylgeranyl diphosph 65.8 17 0.00057 31.8 7.3 84 72-162 131-218 (330)
43 3npk_A Geranyltranstransferase 65.5 38 0.0013 29.1 9.4 113 80-204 144-265 (291)
44 3nf2_A Putative polyprenyl syn 65.2 21 0.00071 31.6 7.9 85 73-162 145-230 (352)
45 2j1p_A Geranylgeranyl pyrophos 58.3 6.3 0.00021 34.0 3.1 108 83-205 162-272 (293)
46 2her_A Fragment, farnesyl pyro 58.1 39 0.0013 30.1 8.4 86 72-162 169-260 (368)
47 3fau_A NEDD4-binding protein 2 57.0 10 0.00035 25.9 3.5 23 181-203 6-28 (82)
48 1uby_A FPS, farnesyl diphospha 56.6 32 0.0011 30.5 7.5 88 72-163 170-264 (367)
49 2q80_A Geranylgeranyl pyrophos 53.8 50 0.0017 28.3 8.2 84 71-162 111-195 (301)
50 1yhl_A Farnesyl pyrophosphate 50.4 32 0.0011 30.3 6.5 88 72-163 152-257 (362)
51 2e8v_A Geranylgeranyl pyrophos 49.2 35 0.0012 29.9 6.5 87 72-163 132-221 (340)
52 2azj_A Geranylgeranyl pyrophos 49.1 49 0.0017 28.3 7.3 115 73-204 137-257 (289)
53 3aqb_B Component B of hexapren 47.0 34 0.0011 29.7 6.0 88 72-163 131-218 (325)
54 3tc1_A Octaprenyl pyrophosphat 44.0 77 0.0026 27.4 7.8 82 72-162 123-206 (315)
55 2zqe_A MUTS2 protein; alpha/be 42.2 24 0.00082 24.3 3.4 21 181-201 10-30 (83)
56 3kra_B Geranyl diphosphate syn 41.7 18 0.00062 30.8 3.3 93 83-204 151-244 (274)
57 1tr8_A Conserved protein (MTH1 41.5 14 0.00047 26.8 2.1 24 171-194 66-89 (102)
58 2d9i_A NEDD4-binding protein 2 40.1 24 0.00083 24.7 3.3 21 181-201 14-34 (96)
59 1v4e_A Octoprenyl-diphosphate 36.7 67 0.0023 27.5 6.2 84 71-164 127-212 (299)
60 2qis_A Farnesyl pyrophosphate 34.8 60 0.002 28.8 5.7 89 72-163 177-271 (374)
61 3vj8_A Squalene synthase; farn 32.2 2.5E+02 0.0086 24.3 9.6 116 79-204 119-244 (343)
62 4akk_A Nitrate regulatory prot 32.1 35 0.0012 30.8 3.8 54 147-200 346-400 (423)
63 3fx7_A Putative uncharacterize 31.2 1.2E+02 0.0041 21.5 5.6 18 17-34 4-21 (94)
64 1nh1_A Avirulence B protein; h 31.0 96 0.0033 26.5 5.9 70 32-113 48-121 (330)
65 3qd7_X Uncharacterized protein 30.4 43 0.0015 25.4 3.4 36 165-202 39-74 (137)
66 2cqq_A RSGI RUH-037, DNAJ homo 30.2 1.2E+02 0.0041 20.1 5.8 45 20-84 12-56 (72)
67 1l1q_A Adenine phosphoribosylt 29.9 16 0.00053 28.9 0.9 22 8-29 120-141 (186)
68 2q58_A Fragment, farnesyl pyro 29.8 22 0.00074 31.6 1.9 88 74-164 171-262 (368)
69 1d0q_A DNA primase; zinc-bindi 29.5 35 0.0012 24.3 2.7 29 168-196 65-93 (103)
70 1vch_A Phosphoribosyltransfera 28.2 17 0.00059 28.1 0.9 21 8-28 123-143 (175)
71 1nul_A XPRT, xanthine-guanine 27.7 25 0.00084 26.8 1.7 21 8-28 84-104 (152)
72 1vdm_A Purine phosphoribosyltr 27.3 17 0.00059 27.4 0.7 21 8-28 86-106 (153)
73 3lk5_A Geranylgeranyl pyrophos 26.1 1.1E+02 0.0038 27.2 5.9 76 81-162 185-263 (380)
74 1xri_A AT1G05000; structural g 25.7 23 0.00077 26.5 1.1 25 171-195 107-131 (151)
75 1y0b_A Xanthine phosphoribosyl 25.7 20 0.00069 28.4 0.9 22 8-29 123-144 (197)
76 2ki0_A DS119; beta-alpha-beta, 24.1 78 0.0027 17.6 2.8 17 17-33 10-26 (36)
77 1g2q_A Adenine phosphoribosylt 23.8 23 0.00079 27.9 0.9 21 8-28 125-145 (187)
78 1a3c_A PYRR, pyrimidine operon 23.7 24 0.00081 27.5 0.9 22 8-29 101-122 (181)
79 3emu_A Leucine rich repeat and 23.6 52 0.0018 25.0 2.9 24 171-194 102-126 (161)
80 1ufr_A TT1027, PYR mRNA-bindin 23.5 24 0.00082 27.6 0.9 22 8-29 99-120 (181)
81 1zn8_A APRT, adenine phosphori 23.3 24 0.00083 27.5 0.9 21 8-28 123-143 (180)
82 2yzk_A OPRT, oprtase, orotate 22.9 25 0.00086 27.5 0.9 22 8-29 109-130 (178)
83 3ic3_A Putative pyruvate dehyd 22.6 95 0.0032 22.3 3.8 25 174-198 61-85 (101)
84 4dhi_B Ubiquitin thioesterase 22.5 2.6E+02 0.0088 23.8 7.3 89 20-108 104-204 (284)
85 2dy0_A APRT, adenine phosphori 22.5 25 0.00087 27.7 0.9 22 8-29 129-150 (190)
86 2p1z_A Phosphoribosyltransfera 21.8 28 0.00097 27.3 1.0 22 8-29 117-138 (180)
87 2ckx_A NGTRF1, telomere bindin 20.1 2.1E+02 0.0073 19.4 6.2 52 199-250 22-75 (83)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=6.2e-81 Score=593.16 Aligned_cols=258 Identities=44% Similarity=0.844 Sum_probs=242.5
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++++|++||+||+|||+|||++||+||+|||++++++||+|||+||.+++++++|++.++.++||+++++|++++|
T Consensus 296 ~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w 375 (554)
T 3g4d_A 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAM 375 (554)
T ss_dssp HHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+++++||++||+|+++||+||+||||++|.+|+|++++++++++++|+.+|+++++|++++|+++++++.++||+|||+|
T Consensus 376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S 455 (554)
T 3g4d_A 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAE 455 (554)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccCCCCCC
Q 025046 161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH 240 (258)
Q Consensus 161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~ 240 (258)
|++|+++|+++|+|+|||+|||+|+|||+++++++++++||+||+++++++++|++|+++++|++|+++++|+++||||.
T Consensus 456 ~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~ 535 (554)
T 3g4d_A 456 HKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535 (554)
T ss_dssp HCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----C
T ss_pred hhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred c-HHHHHHHHHhcccccCC
Q 025046 241 S-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 241 ~-~~~k~~i~~l~~~p~~~ 258 (258)
| ..||++|++||++|||+
T Consensus 536 ~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 536 VGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp CCHHHHHHHHHHHTCCCCC
T ss_pred ccHHHHHHHHHHhcCCCCC
Confidence 9 78999999999999985
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=6.4e-80 Score=585.76 Aligned_cols=257 Identities=44% Similarity=0.805 Sum_probs=246.6
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++++|++||+||+|||+|||++||+||+|||++++++||+|||+||.+++++++|+++++.++||+++++|++++|
T Consensus 292 ~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w 371 (550)
T 3m00_A 292 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 371 (550)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+++++||++||+|+++||+||+||||++|.+|+|++++++++++|+ +.+|+++++|+.++|+++++++.++||+|||+|
T Consensus 372 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S 450 (550)
T 3m00_A 372 KEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTAT 450 (550)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchh
Confidence 9999999999999999999999999999999999999999998877 679999999999999999999999999999999
Q ss_pred hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccC-CCCC
Q 025046 161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKG-DCYT 239 (258)
Q Consensus 161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t 239 (258)
|++|++||+++|+|+|||+|||+|+|||+++++++++++||+||+++++++++|++|+++++|++|+++++|+++ ||||
T Consensus 451 ~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t 530 (550)
T 3m00_A 451 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYT 530 (550)
T ss_dssp HHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999988999999999999999999999998 9999
Q ss_pred Cc-HHHHHHHHHhcccccCC
Q 025046 240 HS-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 240 ~~-~~~k~~i~~l~~~p~~~ 258 (258)
.| ..||++|++||++|||+
T Consensus 531 ~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 531 HPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp CCHHHHHHHHHHHHTCCCCC
T ss_pred CccHHHHHHHHHHhhCCCCC
Confidence 99 58999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.2e-79 Score=585.05 Aligned_cols=257 Identities=31% Similarity=0.551 Sum_probs=249.3
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.+++++++|++.++.++||+++++|++++|
T Consensus 294 ~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w 373 (555)
T 3n0f_A 294 VAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAW 373 (555)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998988889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+++++||++||+|+++||+||+||||++|.+|+|+++++++++++||+.+|+++++|+.++|+++++++.++||+|||+|
T Consensus 374 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S 453 (555)
T 3n0f_A 374 ADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLAS 453 (555)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccCCCCCC
Q 025046 161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH 240 (258)
Q Consensus 161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~ 240 (258)
|++|+++|+++|+|+|||+|+|+|+|||+++++++++++||+||+++++++++|++|+++++|+||+++++|+++||||.
T Consensus 454 ~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~ 533 (555)
T 3n0f_A 454 ASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTS 533 (555)
T ss_dssp HHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CC
T ss_pred hhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred c-HHHHHHHHHhcccccC
Q 025046 241 S-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 241 ~-~~~k~~i~~l~~~p~~ 257 (258)
| ..||++|++||++|||
T Consensus 534 ~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 534 PDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHTTSCCC
T ss_pred ccHHHHHHHHHHHhcCCC
Confidence 9 6899999999999996
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.1e-75 Score=557.91 Aligned_cols=257 Identities=30% Similarity=0.562 Sum_probs=240.4
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||+|||++|++.||+||+|||.+++++||+|||+||.+++++++|++.++.+.+++++++|++++|
T Consensus 291 ~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w 370 (549)
T 1n1b_A 291 AATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSV 370 (549)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhH-HhhhccchHHHHHHHhHHHHhcCcc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEA-FEWISKNPKISRASSVISRLMNDIV 159 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~-~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
++++++|++||+|+++||+||+||||++|.+|+|++++++++++++|+.+|+++ ++|+.++|+++++++.++||+|||+
T Consensus 371 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~ 450 (549)
T 1n1b_A 371 VDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLG 450 (549)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred chhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccCCCCC
Q 025046 160 SHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYT 239 (258)
Q Consensus 160 S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t 239 (258)
||++|+++|+++|+|+|||+|||+|+|||+++++++++++||+||+++++++++|++|+++++|++|+++++|+++||||
T Consensus 451 S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t 530 (549)
T 1n1b_A 451 TSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFG 530 (549)
T ss_dssp ---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC-
T ss_pred hhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred Cc-HHHHHHHHHhcccccC
Q 025046 240 HS-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~~~k~~i~~l~~~p~~ 257 (258)
+| ..||++|++||++|||
T Consensus 531 ~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 531 VQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp ---CHHHHHHHHHHTSCCC
T ss_pred CCcHHHHHHHHHHhcCCCC
Confidence 99 6899999999999997
No 5
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=7.4e-75 Score=554.15 Aligned_cols=257 Identities=29% Similarity=0.488 Sum_probs=251.7
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||+|||++|++.||+||+|||.+++++||+|||+||.+++++++|++.++.+.|++++++|++++|
T Consensus 285 ~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w 364 (543)
T 2ong_A 285 MGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSW 364 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+.+||+||+||||++|.+|+|++++++++++++|+.+|+++++|+.++|+++++++.++||+|||+|
T Consensus 365 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S 444 (543)
T 2ong_A 365 VDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGT 444 (543)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCcHHHHHHHHHhhhhhhhhhccCCCCC
Q 025046 161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEF-LRPTAFPVALIERPFNIARVLEFLYKKGDCYT 239 (258)
Q Consensus 161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~-l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t 239 (258)
|++|+++|+++|+|+|||+|+|+|+|||+++++++++++||+||+++ ++++++|++|+++++|++|+++++|+++||||
T Consensus 445 ~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t 524 (543)
T 2ong_A 445 SVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHG 524 (543)
T ss_dssp SHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTS
T ss_pred hhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCC
Confidence 99999999999999999999999999999999999999999999999 99888999999999999999999999999999
Q ss_pred Cc-HHHHHHHHHhcccccC
Q 025046 240 HS-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~~~k~~i~~l~~~p~~ 257 (258)
.| ..+|++|++||++|||
T Consensus 525 ~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 525 TQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp SSCTTHHHHHHHHHTSCC-
T ss_pred CccHHHHHHHHHHhccCCC
Confidence 99 7899999999999997
No 6
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2e-74 Score=566.50 Aligned_cols=258 Identities=28% Similarity=0.466 Sum_probs=242.9
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|++++||+||+|||+|||++||+||+|||++++++||+|||+||.+++++++|++.++.+++|+++++|++++|
T Consensus 496 ~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw 575 (764)
T 3p5p_A 496 FTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPW 575 (764)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998866779999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+++||+||+||||++|.+|+|++++++.+++++|+.+|+++++|+..+|+|+++++.|+||+|||+|
T Consensus 576 ~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S 655 (764)
T 3p5p_A 576 ELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKT 655 (764)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999976669999999999999999999
Q ss_pred hhhhhhcCcccchhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCcHHHHHHHHHhhhhhhhhhccCCCC
Q 025046 161 HQFEQKRGHVTTGVECYCKQH-GVSEEEVVKVFTEEVENAWKDMNEEFLR-PTAFPVALIERPFNIARVLEFLYKKGDCY 238 (258)
Q Consensus 161 ~~~E~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~~k~ln~e~l~-~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~ 238 (258)
|++|+++|+++|+|+|||+|| |+|+|||+++++++|+++||+||+++++ ++.+|++|+++++|++|++++||+++|||
T Consensus 656 ~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~ 735 (764)
T 3p5p_A 656 YQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGY 735 (764)
T ss_dssp HHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC----
T ss_pred hHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999 7999999999999999999999999997 77899999999999999999999999999
Q ss_pred CCc-HHHHHHHHHhcccccCC
Q 025046 239 THS-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 239 t~~-~~~k~~i~~l~~~p~~~ 258 (258)
|.| ..||++|++||++||++
T Consensus 736 t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 736 GIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp ---CCCHHHHHHHHHTCCCCC
T ss_pred CCCcHHHHHHHHHHHhcCCcc
Confidence 998 56999999999999974
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.8e-74 Score=568.80 Aligned_cols=258 Identities=32% Similarity=0.582 Sum_probs=244.0
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.+++++++|++.++.++||+++++|++++|
T Consensus 555 ~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw 634 (817)
T 3sdr_A 555 FTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGW 634 (817)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchh-HHHHHHhhcCCcCChhHHhhhc--cchHHHHHHHhHHHHhcC
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFM-LATNSFLGMCEVANKEAFEWIS--KNPKISRASSVISRLMND 157 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~-~~~~~~~~~g~~l~~e~~~~~~--~~~~l~~~~~~i~rL~ND 157 (258)
++++++|++||+|+++||+||+||||++|.+|+|+++ ++..+++++|+.+|+++++|+. ++|+|+++++.++||+||
T Consensus 635 ~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~ND 714 (817)
T 3sdr_A 635 EDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADD 714 (817)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999 8888889999999999999976 456999999999999999
Q ss_pred ccchhhhhhcCcccchhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccCC
Q 025046 158 IVSHQFEQKRGHVTTGVECYCKQH-GVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGD 236 (258)
Q Consensus 158 i~S~~~E~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D 236 (258)
|+||++|+++|+++|+|+|||+|| |+|+|||+++++++|+++||+||+++++++.+|++|+++++|++|++++||+++|
T Consensus 715 i~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D 794 (817)
T 3sdr_A 715 TKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGD 794 (817)
T ss_dssp HHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSCC
T ss_pred chHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999 7999999999999999999999999999888999999999999999999999999
Q ss_pred CCCCc-HHHHHHHHHhcccccCC
Q 025046 237 CYTHS-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 237 ~~t~~-~~~k~~i~~l~~~p~~~ 258 (258)
|||.| ..||++|++||++||++
T Consensus 795 g~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 795 GFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp SSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CCCCchHHHHHHHHHHhcCCCCC
Confidence 99998 68999999999999985
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.9e-74 Score=551.67 Aligned_cols=256 Identities=32% Similarity=0.537 Sum_probs=234.7
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||+|||++|++.||+||+|||.+++++||+|||+||.+++++++|++.++.+.+++++++|++++|
T Consensus 312 ~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w 391 (569)
T 2j5c_A 312 LTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVW 391 (569)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+.+||+||+||||++|.+|+|++++++++++++|+.+|+++++|+.++|+++++++.++||+|||+|
T Consensus 392 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S 471 (569)
T 2j5c_A 392 VGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGT 471 (569)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccC-CCCC
Q 025046 161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKG-DCYT 239 (258)
Q Consensus 161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t 239 (258)
|++|+++|+++|+|+|||+|+|+|+|||+++++++++++||+||+++++ +++|++|+++++|++|+++++|+++ ||||
T Consensus 472 ~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t 550 (569)
T 2j5c_A 472 SLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFG 550 (569)
T ss_dssp ----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC
T ss_pred hhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999 8899999999999999999999999 9999
Q ss_pred Cc-HHHHHHHHHhcccccC
Q 025046 240 HS-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~~~k~~i~~l~~~p~~ 257 (258)
.| ..+|++|++||++|||
T Consensus 551 ~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 551 MQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp -CCCHHHHHHHHHHTSCCC
T ss_pred CchHHHHHHHHHHhccCCC
Confidence 99 7899999999999997
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=7.8e-74 Score=563.64 Aligned_cols=256 Identities=31% Similarity=0.525 Sum_probs=244.5
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.+++++++|++.++.+++|+++++|++++|
T Consensus 527 ~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw 606 (785)
T 3s9v_A 527 YTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVW 606 (785)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998876779999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+++||+||+||||++|.+|+|++++++.+++++|+.+|+++++|+..+|+|+++++.++||+|||+|
T Consensus 607 ~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S 686 (785)
T 3s9v_A 607 KVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKT 686 (785)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999976669999999999999999999
Q ss_pred hhhhhhcCcccchhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccCCCCC
Q 025046 161 HQFEQKRGHVTTGVECYCKQH-GVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYT 239 (258)
Q Consensus 161 ~~~E~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t 239 (258)
|++|+++|+++|+|+|||+|| |+|+|||+++++++|+++||+||+++++++ +|++|+++++|++|++++||+++||||
T Consensus 687 ~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t 765 (785)
T 3s9v_A 687 YQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQGDGLT 765 (785)
T ss_dssp HHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCCC---
T ss_pred hhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999 999999999999999999999999999977 999999999999999999999999999
Q ss_pred Cc-H-HHHHHHHHhcccccC
Q 025046 240 HS-H-AIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~-~~k~~i~~l~~~p~~ 257 (258)
.| . .||++|++||++||.
T Consensus 766 ~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 766 LSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp -CHHHHHHHHHHHHHTSCCC
T ss_pred CCChHHHHHHHHHHhcccCC
Confidence 99 4 699999999999984
No 10
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=2.8e-47 Score=344.52 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=181.3
Q ss_pred CceeeeehheecccccCC--CCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHH
Q 025046 1 MTKTIYMASIIDDTFDAY--GFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKE 78 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~--gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~ 78 (258)
+||+++|+|++||+||.+ ||++|++.|+++++||+.+ .+|++++++++++.+++++++..+.+ ...+++++
T Consensus 69 ~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~ 141 (337)
T 1ps1_A 69 GVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSAR 141 (337)
T ss_dssp HHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHH
Confidence 479999999999999998 6999999999999999864 58999999999999999999876433 34679999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC-ChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcC
Q 025046 79 KMQELVQMYFVQAKWSSEGYVP-TWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMND 157 (258)
Q Consensus 79 ~~~~~~~~~~~Ea~w~~~~~~P-t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 157 (258)
+|+++++++++||+|+.+|++| |++||+++|++|+|++++++++++++|..+|++++++ +..++++++++.++||+||
T Consensus 142 ~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~ND 220 (337)
T 1ps1_A 142 HWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLND 220 (337)
T ss_dssp HHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999998877 5566899999999999999
Q ss_pred ccchhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 025046 158 IVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFL 208 (258)
Q Consensus 158 i~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l 208 (258)
|+||+||+++|+++|+|.|||+++|+|+|+|++++.++++++||++|++.-
T Consensus 221 l~S~~kE~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 221 IASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLLLES 271 (337)
T ss_dssp HHTHHHHHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999873
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=3.3e-45 Score=325.63 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=178.0
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++.|+|++||+||. |+.+|++.|++++.||+.+ +.+|++++++++++++++++++..+ + .+.++.|
T Consensus 65 ~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~-~-------~~~~~~~ 133 (300)
T 1di1_A 65 ACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHD-A-------ELANEVL 133 (300)
T ss_dssp HHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHH-H-------HHHHHHH
T ss_pred HHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhC-h-------HHHHHHH
Confidence 47999999999999999 8899999999999999875 5789999999999999999999876 2 2566779
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+.++++++ |++|+.+|++||++||+++|++|+|++++++++++++|..+|+++++ ..++++++++.++||+|||+|
T Consensus 134 ~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S 209 (300)
T 1di1_A 134 EPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYS 209 (300)
T ss_dssp HHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHH
Confidence 99999997 89999999999999999999999999999999999999999999998 359999999999999999999
Q ss_pred hhhhhhcCc--------ccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025046 161 HQFEQKRGH--------VTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 161 ~~~E~~~g~--------~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~ 207 (258)
|+||+++|+ ++|+|.|||+++|+|+|+|+++++++++++||++|+..
T Consensus 210 ~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 210 YDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp TTTTCCC----------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccccccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 77999999999999999999999999999999999876
No 12
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=5e-44 Score=329.15 Aligned_cols=201 Identities=12% Similarity=0.014 Sum_probs=183.7
Q ss_pred CceeeeehheecccccC--CC-CHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhH
Q 025046 1 MTKTIYMASIIDDTFDA--YG-FFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDK 77 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~--~g-t~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~ 77 (258)
+||+++|+|++||+||. +| ++++++.|++++.++-.. ...+|++++++++++.+++++++..+.+. ..++++
T Consensus 109 ~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~~----~~~r~~ 183 (382)
T 3kb9_A 109 IADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPAT----WNARFA 183 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCHH----HHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHHHHccCCHH----HHHHHH
Confidence 37899999999999997 66 999999999999986222 22368899999999999999998765442 367999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcC
Q 025046 78 EKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMND 157 (258)
Q Consensus 78 ~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 157 (258)
++|++++++|++||+|+.+|++||++|||++|++|+|+.++++++++++|..+|++++++ +..++|+++++.++||+||
T Consensus 184 ~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~ND 262 (382)
T 3kb9_A 184 RHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYND 262 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 6678899999999999999
Q ss_pred ccchhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025046 158 IVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 158 i~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~ 207 (258)
|+||+||+++|+++|+|.|||+++|+|+|+|+++++++++++||+||+..
T Consensus 263 i~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 263 LCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999843
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.6e-43 Score=316.40 Aligned_cols=192 Identities=16% Similarity=0.126 Sum_probs=174.4
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM 80 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||. |+++|++.|++++.||+.+ +.+|++++++++++++++++++..+ + .+.++.|
T Consensus 79 ~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~ 147 (320)
T 3bny_A 79 ACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEIL 147 (320)
T ss_dssp HHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTH
T ss_pred HHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHH
Confidence 48999999999999999 8999999999999999865 4689999999999999999999775 2 1445556
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+.++ ++++|++|+.+|++||++||+++|++|+|++++++++++++|..+|+++++. .++++++++.++||+|||+|
T Consensus 148 ~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S 223 (320)
T 3bny_A 148 EPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYS 223 (320)
T ss_dssp HHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccch
Confidence 6677 5999999999999999999999999999999999999999999999999983 69999999999999999999
Q ss_pred hhhhhhcCc--------ccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025046 161 HQFEQKRGH--------VTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 161 ~~~E~~~g~--------~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~ 207 (258)
|+||+++|+ ++|+|.|||+++|+|+|+|++++.+++++.|+++|+..
T Consensus 224 ~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 224 YEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHCC-----------CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhcccccccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 78999999999999999999999999999999999865
No 14
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=2.6e-34 Score=267.54 Aligned_cols=199 Identities=12% Similarity=0.062 Sum_probs=157.4
Q ss_pred ceeeeehheeccc-ccCCC-CHHHH-HHHHHHHHhccCcc---cCCCChh-----HHHHHHHHHHHHHHHHHHHHHhCCC
Q 025046 2 TKTIYMASIIDDT-FDAYG-FFEEL-KLFVEAVQRWDIGA---MDILPEY-----MKVLYKALLDTYNEVEQDLAKEGRS 70 (258)
Q Consensus 2 tK~~~~~~~~DD~-~D~~g-t~~El-~~~~~ai~rWd~~~---~~~lp~~-----~k~~~~al~~~~~ei~~~~~~~~~~ 70 (258)
+|+..|+|++||. +|..| +.+.+ ..+..+ .+.-... .+.-|.. -.++.++++++++++...+.+.
T Consensus 180 ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a-~~~~d~l~~~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~~--- 255 (433)
T 3v1v_A 180 TRLMVAENAVDDCYCEDHGGSPVGLGGRLLLA-HTAIDHFHSTAEYTPTWQASLAADAPRRAYDSAMGYFVRAATPS--- 255 (433)
T ss_dssp HHHHHHHHHHHHHHTC----CCTTHHHHHHHH-HTTTSCCCCCTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhHHHHHHH-HHHHHhhhcccCCCCccccccCCchHHHHHHHHHHHHHhhcCHH---
Confidence 5789999999999 59755 33321 111211 0111111 1101110 1256899999999998876553
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHh
Q 025046 71 SYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSV 150 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
..++++++|++|+++|++||+|+..|++||++|||++|++| |+.+++++..+++|..+|++++++ +...+|+++++.
T Consensus 256 -q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~ 332 (433)
T 3v1v_A 256 -QSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGN 332 (433)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999 667766777888999999999987 556778999999
Q ss_pred HHHHhcCccchhhhhhcC-cccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025046 151 ISRLMNDIVSHQFEQKRG-HVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 151 i~rL~NDi~S~~~E~~~g-~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~ 207 (258)
++||+|||+||+||+++| +++|+|.|||+++|+|+|||++++.+++++.++++.+..
T Consensus 333 i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 333 ATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999995 788999999999999999999999999999999887654
No 15
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=9.9e-35 Score=282.93 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=165.9
Q ss_pred CceeeeehheecccccCCCCHHHHHHHHHHHHhccCc---------ccCC---CChh--HHHHHHHHHHHHHHHHHHHHH
Q 025046 1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIG---------AMDI---LPEY--MKVLYKALLDTYNEVEQDLAK 66 (258)
Q Consensus 1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~---------~~~~---lp~~--~k~~~~al~~~~~ei~~~~~~ 66 (258)
+||++++++++||+||+|| |||++||+||+|||.+ +.+. +|+| ||+||.+++++++|++.++.+
T Consensus 502 ~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k 579 (727)
T 3pya_A 502 WAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFM 579 (727)
T ss_dssp HHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999 9999999999999974 3333 3887 899999999999999999988
Q ss_pred hCCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHH
Q 025046 67 EGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISR 146 (258)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~ 146 (258)
.||+++++|++++|.+++++++.|++ + +| + . +++....+..|..+++ ++.+ +.+..|.+
T Consensus 580 ~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E----A-----e-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ 638 (727)
T 3pya_A 580 SHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE----G-----E-LMVKMIILMKNNDLTN-FFTH-THFVRLAE 638 (727)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH----H-----H-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc----e-----e-eeeeeeecCCCcchHh-hccC-hhHHHHHH
Confidence 88889999999999999999999997 2 33 1 1 2222223333777887 7765 66777999
Q ss_pred HHHhHHHHhcCccchhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCcHHHHHHHHHh
Q 025046 147 ASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPT--AFPVALIERPFNI 224 (258)
Q Consensus 147 ~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~--~~p~~~~~~~~n~ 224 (258)
+++.++||+||+.+|++|+ .+++.+.|+..|+++++.+++++ .+|++| |+
T Consensus 639 ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf 690 (727)
T 3pya_A 639 IINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TF 690 (727)
T ss_dssp HHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HH
T ss_pred HHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cH
Confidence 9999999999999999977 55889999999999999999854 799999 99
Q ss_pred hhhhhhhhccCCCCCCcHHHHHHHHHhcccccC
Q 025046 225 ARVLEFLYKKGDCYTHSHAIKDQIAAVLRDPVT 257 (258)
Q Consensus 225 ~R~~~~~Y~~~D~~t~~~~~k~~i~~l~~~p~~ 257 (258)
.++++.||.. ||+.|+ |+.||.+++++||-
T Consensus 691 ~~V~ksFYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 691 LDVAKAFYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHHHHHHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 9999999986 999998 99999999999984
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.75 E-value=1.1e-18 Score=159.36 Aligned_cols=201 Identities=12% Similarity=0.055 Sum_probs=149.0
Q ss_pred ceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHHH
Q 025046 2 TKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQ 81 (258)
Q Consensus 2 tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~ 81 (258)
+++..|+|++||++|..+ +++..|.+.+-+ .. -|+ .++..++.+.+.++...+ ++.+..++.++|.
T Consensus 90 ad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~--G~----~~~--~Pl~~al~dl~~rl~~~~----~p~~~~rf~~s~~ 155 (374)
T 1yyq_A 90 SIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GR----EQA--HPWWALVNEHFPNVLRHF----GPFCSLNLIRSTL 155 (374)
T ss_dssp HHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH--TC----CCS--SHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccCcH--HHHHHHHHHHhc--CC----CCC--ChHHHHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 578899999999999754 778888887764 22 122 377788888888876554 3345678999999
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHh---hhccchHHHHHHHhHHHHhcCc
Q 025046 82 ELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFE---WISKNPKISRASSVISRLMNDI 158 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~~~~l~~~~~~i~rL~NDi 158 (258)
+++.++..|+.. .+..|+.++|...++.++|+.-.... -.+|+..+. ..+.+...++....++.|+|||
T Consensus 156 ~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDI 227 (374)
T 1yyq_A 156 DFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDL 227 (374)
T ss_dssp HHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhh
Confidence 999999999873 77789999999998888887544332 123333331 1122345677777799999999
Q ss_pred cchhhhhh-cCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhh
Q 025046 159 VSHQFEQK-RGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARV 227 (258)
Q Consensus 159 ~S~~~E~~-~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~ 227 (258)
.||.||.. .|+.+|+|.+++.++|+|.++|++++.+++..+..++.+. +. ...|. +++.+-+..|.
T Consensus 228 lSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~~-L~-~~~~~-~l~al~~~irG 294 (374)
T 1yyq_A 228 MSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV-FS-DKDPQ-VMDTIECFMHG 294 (374)
T ss_dssp HHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-HS-SSCHH-HHHHHHHHHHH
T ss_pred hccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHHH-hc-cCCHH-HHHHHHHHHhH
Confidence 99999998 4999999999999999999999999999999999888553 32 22332 44444444443
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=91.85 E-value=0.59 Score=40.71 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=75.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHHhhhccchHHHHHHHh
Q 025046 73 LRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAFEWISKNPKISRASSV 150 (258)
Q Consensus 73 ~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
+..+.+.....+.+-..+..|... .||.++|++.-..-+|.-+..+. ..|. +. .+++..+.+ ..+-+....
T Consensus 129 ~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~-~~ga~lag-~~~~~~~~l---~~~g~~lGl 201 (295)
T 3ipi_A 129 IQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISA-SIGAYTGG-AEEELAERF---SHFGNALGT 201 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHH-HHHHHHTT-CCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHHHH
Confidence 445566667778888877777543 48999999886665555443222 2221 11 344444433 456778888
Q ss_pred HHHHhcCccchhhhh-----hcCcccchhhhhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH-HHHHHHH
Q 025046 151 ISRLMNDIVSHQFEQ-----KRGHVTTGVECYCKQHGV--SEEEVVKVFTEEVENAWKDMNEEFLRPTAFPV-ALIERPF 222 (258)
Q Consensus 151 i~rL~NDi~S~~~E~-----~~g~~~n~V~~ym~e~g~--s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~-~~~~~~~ 222 (258)
..-+.||+..+.... ..|. .+...+|..+.+- ..+.|.+.+++.++++.+.+. .+|. +.++...
T Consensus 202 aFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~L~ 273 (295)
T 3ipi_A 202 AYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDKLF 273 (295)
T ss_dssp HHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHHH
Confidence 999999998886533 2233 3666666655421 145555556666666665543 2443 3444444
Q ss_pred Hhhh
Q 025046 223 NIAR 226 (258)
Q Consensus 223 n~~R 226 (258)
++++
T Consensus 274 ~l~~ 277 (295)
T 3ipi_A 274 QITD 277 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=90.48 E-value=1.3 Score=39.73 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=58.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.+.+...+.+-..+..|.... ||.++|+++-..-+|.-+..++..-++--..+++..+.+ ..+-+.....
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l---~~~g~~lG~a 235 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDAL---KNFGAAVGMI 235 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 45677788889999999999987655 999999988766555554332211111011344544433 4567788888
Q ss_pred HHHhcCccchhh
Q 025046 152 SRLMNDIVSHQF 163 (258)
Q Consensus 152 ~rL~NDi~S~~~ 163 (258)
.-+.||+..+..
T Consensus 236 FQI~DDilD~~~ 247 (360)
T 3lmd_A 236 FQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHccC
Confidence 899999988753
No 19
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=88.49 E-value=11 Score=32.26 Aligned_cols=170 Identities=16% Similarity=0.116 Sum_probs=87.8
Q ss_pred hheecccccCCCCHHHHHHHHHHHHh-ccCccc--CCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVEAVQR-WDIGAM--DILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELV 84 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ai~r-Wd~~~~--~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~ 84 (258)
.-.+||+=|....+.+|+.+.+.+++ .+.... ...|+ .++..++.++..+. + --++.+.+++
T Consensus 50 ~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~-----l~~~~~~~li 114 (293)
T 3acx_A 50 CRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------N-----IAFQSFYNLI 114 (293)
T ss_dssp HHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------C-----CCHHHHHHHH
T ss_pred HHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------C-----CCHHHHHHHH
Confidence 34579999976555557777776665 222110 00032 36777777665442 2 1235567777
Q ss_pred HHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccchhhh
Q 025046 85 QMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFE 164 (258)
Q Consensus 85 ~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E 164 (258)
.++-. +......+|++|+..+...+.|.--..++-.++..+ .++..+ .....+...-|.|=+......
T Consensus 115 ~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~-------~A~~lG~AlQltNilRDv~eD 182 (293)
T 3acx_A 115 DTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYD-------VARRLGESLQLINILRDVGED 182 (293)
T ss_dssp HHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHH-------HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 77743 334456778888877777666655444444443321 122222 222223333333322333344
Q ss_pred hhcCcccchhhhhhhcCCCCHHH---------HHHHHHHHHHHHHHHHHH
Q 025046 165 QKRGHVTTGVECYCKQHGVSEEE---------VVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 165 ~~~g~~~n~V~~ym~e~g~s~ee---------A~~~i~~~i~~~~k~ln~ 205 (258)
.++|-+ =.=.--|.++|+|.++ ..+-+..++..+...+.+
T Consensus 183 ~~~gR~-YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 183 FENERI-YFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp HHTTCC-CSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCcE-EeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 556653 1112346788999876 223455566666555543
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=86.75 E-value=5.1 Score=35.30 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=56.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHh
Q 025046 71 SYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSV 150 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
..+..+.+.....+.+-..+..|.. +..||.++|++.-..-+|..+..++..-++--..+++..+.+ ..+-+....
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 208 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFA---RLLGEYIGI 208 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 3456677788888999888888854 345899999988776666554322211111011344444433 457778888
Q ss_pred HHHHhcCccchh
Q 025046 151 ISRLMNDIVSHQ 162 (258)
Q Consensus 151 i~rL~NDi~S~~ 162 (258)
..-+.||+..+.
T Consensus 209 aFQi~DD~ld~~ 220 (334)
T 3rmg_A 209 CFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHhccCC
Confidence 899999998875
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=85.98 E-value=6.7 Score=34.73 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=56.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc-CCcCChhHHhhhccchHHHHHHH
Q 025046 71 SYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM-CEVANKEAFEWISKNPKISRASS 149 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
..+..+.+.....+.+-..+..|.. +..||.++|++.-..-+|.-+..+. ..|. --..+++..+.+ ..+-+...
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG 225 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAAS-EAGAVSAGVDVAKSEAL---RDYGLNLG 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHH
Confidence 3456677778888888888888743 3458999999887766665543222 2221 011345544433 45677888
Q ss_pred hHHHHhcCccchhh
Q 025046 150 VISRLMNDIVSHQF 163 (258)
Q Consensus 150 ~i~rL~NDi~S~~~ 163 (258)
...-+.||+..+..
T Consensus 226 ~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 226 LAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhccC
Confidence 89999999988754
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=85.96 E-value=10 Score=33.44 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=55.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHh
Q 025046 71 SYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSV 150 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
..+..+.+.....+.+-..+..|.. +..||.++|+++-..-+|.-+..+...-+.--..+++..+.+ ..+-+....
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 214 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQAL---FDYGDALGI 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 3455677777888899888888854 446899999987666555544322211111011344444332 456778888
Q ss_pred HHHHhcCccchhh
Q 025046 151 ISRLMNDIVSHQF 163 (258)
Q Consensus 151 i~rL~NDi~S~~~ 163 (258)
..-+.||+..+..
T Consensus 215 aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 215 AFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhccC
Confidence 8889999887753
No 23
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=84.14 E-value=8.1 Score=33.22 Aligned_cols=120 Identities=10% Similarity=-0.030 Sum_probs=77.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHh--hcCCcCChhHHhhhccchHHHHHHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFL--GMCEVANKEAFEWISKNPKISRASS 149 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~--~~g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
.+..+.+.....+.+-..+..|......||.++|++.-..-+|.-+..+...- ..| .+++ . ..++-....
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHHH
Confidence 45566677788889999898987654478999999987665555433222111 112 2333 1 145677888
Q ss_pred hHHHHhcCccchhhhh-hcCc-----c--cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 150 VISRLMNDIVSHQFEQ-KRGH-----V--TTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 150 ~i~rL~NDi~S~~~E~-~~g~-----~--~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
...-+.||+..+..+. ..|. . .+...+| ..|.|.+.+++.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999986542 2232 1 2333333 2688999999999999988765
No 24
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=83.38 E-value=3.6 Score=35.74 Aligned_cols=113 Identities=9% Similarity=0.045 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
...+.+-..+..|... .+|.++|++.-..-+|.-+..+...-+.--..+++..+.+ .++-.......-+.||+..
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~aFQI~DDilD 222 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHL---ESYSYHLGMMFQIKDDLLD 222 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777543 7899999998776555544322211111001455545443 4577788889999999998
Q ss_pred hhhhh-----------hcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 161 HQFEQ-----------KRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 161 ~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
+..+. ..|. .+...++- .+.|.+.+.+.++++.+.+..
T Consensus 223 ~~~d~~~~GK~~g~Dl~~gK-~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 223 CYGDEAKLGKKVGSDLENNK-STYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHCC--------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHhCCCcchHHHcCC-CcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 85432 1222 24444432 578888999999999877754
No 25
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=82.97 E-value=3.2 Score=36.03 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHHhhhccchHHHHHHHhHHHHhcCc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAFEWISKNPKISRASSVISRLMNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
...+.+-..+..|...+..||.++|++.-..-+|.-+..+. ..|. +. .+++ . ..++-+......-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~-~~ga~lag-~~~~---~---l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAA-QAGAILAG-ADRG---P---LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHT-CCCH---H---HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHH-HHHHHHcC-CCHH---H---HHHHHHHHHHHHHHHHHH
Confidence 45677778888887657789999999875554444332221 1111 11 2333 1 145677888899999999
Q ss_pred cchhhhh-----------hcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 159 VSHQFEQ-----------KRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 159 ~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
..+..+. ..|.. +...++ | .|.|.+..++.++++...++.
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~----~--l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL----G--LAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------C-CHHHHH----C--SSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH----H--HHHHHHHHHHHHHHHHHHHHh
Confidence 9886432 12222 444333 3 477888999999999877653
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=81.72 E-value=7.3 Score=34.22 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHHhhhccchHHHHHHHhHHHHhcCc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAFEWISKNPKISRASSVISRLMNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
...+.+-..+-.|.. ..||.++|++.-..-+|.-+..+ ...|. +...+++..+.+ .++-+......-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346667777777754 37899999988554444443322 22221 221345544433 45677888888999999
Q ss_pred cchhhh-----------hhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 025046 159 VSHQFE-----------QKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 159 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
..+..+ ...|.. +.+.+| ..|.|.+.+++.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 887532 122322 444444 368899999999998886654
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=81.25 E-value=6.3 Score=34.24 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHHhhhccchHHHHHHHhHHHHhcCcc
Q 025046 82 ELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAFEWISKNPKISRASSVISRLMNDIV 159 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
..+.+-..+-.|. +..||.++|.++-..-+|.-+..+. ..|. + ..+++..+.+ .++-+......-+.||+.
T Consensus 157 ~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~~-~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 157 GMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFAL-IAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHHH-HHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556666666664 3478999999875444443332221 2211 1 1344444433 456778888889999998
Q ss_pred chhhh-----------hhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 160 SHQFE-----------QKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 160 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
.+..+ ...|.. +...++ ..+.|.+.+++.++++.+.++.
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87432 122222 444333 4789999999999999988764
No 28
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=81.17 E-value=8.2 Score=33.96 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=57.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.+.....+.+-..+..|.... ..|.++|+++-..-+|..+..+...-+.--..+++..+.+ .++-......
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 213 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKAL---SSWGRNVGIA 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 34566677788899999999986533 4599999998776565554332221111011345544433 4577888889
Q ss_pred HHHhcCccchhh
Q 025046 152 SRLMNDIVSHQF 163 (258)
Q Consensus 152 ~rL~NDi~S~~~ 163 (258)
.-+.||+..+.-
T Consensus 214 FQI~DD~lD~~~ 225 (342)
T 1wy0_A 214 FQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHhccC
Confidence 999999988753
No 29
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=79.52 E-value=15 Score=32.24 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=53.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHHhhhccchHHHHHHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAFEWISKNPKISRASS 149 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
.+..+.+.....+.+-+.+..|.. +..||.++|++.-..-+|..+..+ ...|. +. .+++..+.+ ..+-+...
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG-APQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 345666777888888887777643 456899999987655555443322 22221 11 345544433 45667778
Q ss_pred hHHHHhcCccchh
Q 025046 150 VISRLMNDIVSHQ 162 (258)
Q Consensus 150 ~i~rL~NDi~S~~ 162 (258)
...-+.||+..+.
T Consensus 218 ~aFQi~DD~ld~~ 230 (334)
T 3pko_A 218 CAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcc
Confidence 8888888887764
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=78.68 E-value=4.4 Score=35.22 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHHhhhccchHHHHHHHhHHHHhcCcc
Q 025046 82 ELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAFEWISKNPKISRASSVISRLMNDIV 159 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
..+.+-..+..|. +..||.++|++.-..-+|.-+..+ ...|. +...+++..+. ..++-+......-+.||+.
T Consensus 159 ~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDil 232 (302)
T 3p8r_A 159 GMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDIL 232 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777775 457899999988654444433322 22221 11112222222 2456678888899999998
Q ss_pred chhhhh-----------hcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 160 SHQFEQ-----------KRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 160 S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
.+..+. ..|.. +...+| ..|.|.+.+++.++++.+.++.
T Consensus 233 D~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 233 DIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 875432 22222 444444 3688999999999999877753
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=78.61 E-value=7.1 Score=34.43 Aligned_cols=111 Identities=12% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHh--hcCCcCChhHHhhhccchHHHHHHHhHHHHhcCc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFL--GMCEVANKEAFEWISKNPKISRASSVISRLMNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~--~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
...+.+-..+..|... .+|.++|++.-..-+|.-+..+...- ..| .+++..+.+ .++-+......-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777788654 68999999987766655433222111 112 345544443 45677888899999999
Q ss_pred cchhhhh-----------hcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 159 VSHQFEQ-----------KRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 159 ~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
..+..+. ..|. .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGK-GTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875422 1222 2444333 2688999999999999877754
No 32
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=78.02 E-value=7.2 Score=34.13 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhh--cCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 83 LVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLG--MCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 83 ~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
.+.+-..+-.|. +..||.++|++.-..-+|.-+..+ ...| ++...+++..+.+ .++-+......-+.||+..
T Consensus 153 m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 153 MITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp HHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 566666666764 445899999988654444433222 2222 1222344444433 4567788889999999988
Q ss_pred hhhhh-----------hcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 161 HQFEQ-----------KRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 161 ~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
+..+. +.|. .+...+| ..|.|.+.+++.++++...++.
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp TC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 75321 2222 2545444 3688999999999999877753
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=76.62 E-value=11 Score=32.75 Aligned_cols=112 Identities=9% Similarity=0.071 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCc-CChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 82 ELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEV-ANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~-l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
..+.+-..+..|... ..||.++|++.-..-+|.-+..+.....++.. .+++..+.+ .++-+......-+.||+..
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDilD 234 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYLD 234 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 456677777777532 37899999988654444433222222222322 455555443 4577788889999999988
Q ss_pred hhhhh-----------hcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 025046 161 HQFEQ-----------KRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 161 ~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
+..+. ..|.. +.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 235 ~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 235 LYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 75432 22222 444333 378999999999999886654
No 34
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=76.61 E-value=13 Score=32.82 Aligned_cols=88 Identities=10% Similarity=0.022 Sum_probs=53.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.+.....+.+-..+..|.. +..+|.++|++.-..-+|..+..++..-++--..+++..+.+ .++-+.....
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 229 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLA---FEYGRNLGLA 229 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHHH
Confidence 455666677778888777766543 235799999988665555443322211111011344444332 4566778888
Q ss_pred HHHhcCccchhh
Q 025046 152 SRLMNDIVSHQF 163 (258)
Q Consensus 152 ~rL~NDi~S~~~ 163 (258)
.-+.||+..+.-
T Consensus 230 FQi~DD~lD~~g 241 (348)
T 3apz_A 230 FQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHhhccC
Confidence 889999988864
No 35
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=76.45 E-value=7.2 Score=33.88 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhh--cCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 83 LVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLG--MCEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 83 ~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
.+.+-..+..|.. ..||.++|++.-..-+|.-+..+ ...| ++...+++..+.+ .++-+......-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 5666666777754 35899999988554444433222 1222 1221144444433 4567788889999999998
Q ss_pred hhhhh-hcCc-----c----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 025046 161 HQFEQ-KRGH-----V----TTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 161 ~~~E~-~~g~-----~----~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
+..+. ..|. . .+...+| ..|.|.+.+++.++++.+.++
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 86432 1122 1 2444443 468899999999999987765
No 36
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=76.41 E-value=35 Score=29.09 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=75.4
Q ss_pred hheecccccCCC-C-HHHHHHHHHHHHh-ccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHH
Q 025046 8 ASIIDDTFDAYG-F-FEELKLFVEAVQR-WDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELV 84 (258)
Q Consensus 8 ~~~~DD~~D~~g-t-~~El~~~~~ai~r-Wd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~ 84 (258)
.=.+||+=|... . ...|+.+-+.+++ .... |. .|++.+|.++..+.. . -++.+.+++
T Consensus 51 ~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~~--------l-----~~~~~~~li 110 (294)
T 4hd1_A 51 CRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATCN--------L-----PMEPFLRLI 110 (294)
T ss_dssp HHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHHT--------C-----CSHHHHHHH
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHcC--------C-----CHHHHHHHH
Confidence 345799998643 2 3456666666654 2211 22 277788777665432 1 123456677
Q ss_pred HHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccchhhh
Q 025046 85 QMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFE 164 (258)
Q Consensus 85 ~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E 164 (258)
.++..... ....+|++|+..+...+.|..-.+++..++.. +++.... -...+...-|.|=+......
T Consensus 111 ~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~~~~~~~-------A~~lG~AlQltNilRDv~eD 177 (294)
T 4hd1_A 111 EANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---DDERARL-------SDATCTALQVANHMQDIDRD 177 (294)
T ss_dssp HHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---SHHHHHH-------HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---CHHHHHH-------HHHHHHHHHHHHHHHhchhh
Confidence 77754433 34567888877776666554444333333321 2232222 12222333333333333444
Q ss_pred hhcCcccchh-hhhhhcCCCCHHH
Q 025046 165 QKRGHVTTGV-ECYCKQHGVSEEE 187 (258)
Q Consensus 165 ~~~g~~~n~V-~~ym~e~g~s~ee 187 (258)
.++|-+ .+ .-.|.++|+|.++
T Consensus 178 ~~~gR~--YlP~~~l~~~gv~~~d 199 (294)
T 4hd1_A 178 LALGRI--YVPRADLEQFGATLDD 199 (294)
T ss_dssp HHTTCB--CSCHHHHHTTTCCHHH
T ss_pred hccCce--eCCHHHHHHcCCCHHH
Confidence 566653 12 2357889999875
No 37
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=74.56 E-value=11 Score=33.39 Aligned_cols=88 Identities=10% Similarity=0.130 Sum_probs=56.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhh----------CCC-CCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhcc
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSS----------EGY-VPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISK 140 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~----------~~~-~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~ 140 (258)
.+..+.+.....+.+-..+..|.. .+. .||.++|+++-..-+|..+..++..-++--..+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l-- 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAA-- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH--
Confidence 345677778888999988888862 233 6799999998666565554322211111011344444333
Q ss_pred chHHHHHHHhHHHHhcCccchh
Q 025046 141 NPKISRASSVISRLMNDIVSHQ 162 (258)
Q Consensus 141 ~~~l~~~~~~i~rL~NDi~S~~ 162 (258)
..+-+......-+.||+..+-
T Consensus 211 -~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 -WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhc
Confidence 456777888888899988774
No 38
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=71.15 E-value=17 Score=31.65 Aligned_cols=109 Identities=7% Similarity=-0.008 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhh--cCCcCChhHHhhhccchHHHHHHHhHHHHhcCcc
Q 025046 82 ELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLG--MCEVANKEAFEWISKNPKISRASSVISRLMNDIV 159 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
..+.+-..+-.|. +..+|.++|...-..-+|.-+..+. ..| ++. .+++..+.+ .++-+......-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~ga~lag-a~~~~~~~l---~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAV-QAGLILGQ-APEAQWPAY---LQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT-CCGGGHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3556666666664 4468999999885444444332222 221 111 344444332 456778888889999998
Q ss_pred chhhh-----------hhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 025046 160 SHQFE-----------QKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 160 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
.+..+ ...|.. +...+| ..+.|.+..+++++++...+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 87532 122222 333333 357888899999999987775
No 39
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=70.68 E-value=14 Score=32.44 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc-CCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046 82 ELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM-CEVANKEAFEWISKNPKISRASSVISRLMNDIVS 160 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
..+.+-..+..|... ..||.++|++.-..-+|.-+..+. ..|. --..+++..+.+ .++-+......-+.||+..
T Consensus 181 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~-~~Ga~laga~~~~~~~l---~~~g~~lGlAFQI~DDiLD 255 (324)
T 3uca_A 181 GMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASI-MSGAVLAEASEGDIKKL---EGFGYKLGLAFQIKDDILD 255 (324)
T ss_dssp THHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 466777777777532 368999999885444443332222 2221 011344444433 4567788888999999988
Q ss_pred hhhh-----------hhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 161 HQFE-----------QKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 161 ~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
+..+ ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 256 ~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 256 VVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 122222 444333 3689999999999999988754
No 40
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=68.41 E-value=12 Score=32.58 Aligned_cols=112 Identities=11% Similarity=0.157 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHH-hhhccchHHHHHHHhHHHHhcC
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAF-EWISKNPKISRASSVISRLMND 157 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~-~~~~~~~~l~~~~~~i~rL~ND 157 (258)
...+.+-..+..|. +..||.++|+..-..-+|.-+..+. ..|. +. .+++.. +.+ ..+-+......-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga~lag-a~~~~~~~~l---~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGLVASG-IKDEELFKWL---QAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC-CCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC-CCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34566766666764 5678999999885544444432222 1221 11 334433 333 4577788889999999
Q ss_pred ccchhhh-hhcCcccchhhhhhhcCCCC------HHHHHHHHHHHHHHHHHHHH
Q 025046 158 IVSHQFE-QKRGHVTTGVECYCKQHGVS------EEEVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 158 i~S~~~E-~~~g~~~n~V~~ym~e~g~s------~eeA~~~i~~~i~~~~k~ln 204 (258)
+..+..+ ..-|..... .+...| .|.|.+..+++++++.+.+.
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988643 223433211 233333 58888889999998887775
No 41
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=68.39 E-value=19 Score=31.00 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc-C-CcCChhHHhhhccchHHHHHHHhHHHHhcCc
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM-C-EVANKEAFEWISKNPKISRASSVISRLMNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g-~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
...+.+-..+..|... .+|.++|++.-..-+|.-+..+. ..|. - -..+++..+.+ .++-+......-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~l~ag~~~~~~~~l---~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAV-RLGALSAGDKGRRALPVL---DKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3456777777777543 78999999987655554433222 2221 0 01233433332 45677888899999999
Q ss_pred cchhhhh-----------hcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 159 VSHQFEQ-----------KRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 159 ~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
..+..+. ..|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8885432 22222 444333 2478888999999999988765
No 42
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=65.83 E-value=17 Score=31.82 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=54.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHH-hhCCCCCChhhhhccccccccch-hHHHHHH--hhcCCcCChhHHhhhccchHHHHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKW-SSEGYVPTWEEYYPVGLVSGGYF-MLATNSF--LGMCEVANKEAFEWISKNPKISRA 147 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w-~~~~~~Pt~eEYl~~~~~s~g~~-~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~ 147 (258)
.+..+.+.....+.+-..+..| ...+..||.++|+++-..-+|.. +..+... +..| .+++.. ...+-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag--~~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG--KTPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC--CCHHHH-----HHHHHHH
Confidence 3556677788899999999999 65435689999998876655544 3222111 1112 222222 2456777
Q ss_pred HHhHHHHhcCccchh
Q 025046 148 SSVISRLMNDIVSHQ 162 (258)
Q Consensus 148 ~~~i~rL~NDi~S~~ 162 (258)
.....-+.||+..+.
T Consensus 204 lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCccc
Confidence 888888888888775
No 43
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=65.53 E-value=38 Score=29.09 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc-CCcCChhHHhhhccchHHHHHHHhHHHHhcCc
Q 025046 80 MQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM-CEVANKEAFEWISKNPKISRASSVISRLMNDI 158 (258)
Q Consensus 80 ~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
....+.+-..+..|. +..||.++|..+-..-+|.-+..+. ..|. --..+++..+.+ .++-+......-+.||+
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~laga~~~~~~~l---~~~g~~lGlaFQI~DDi 217 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEICELNNEESNQI---YKLGLKLGLIFQINDDI 217 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344566666666664 3578999999886544444433222 2221 011344444332 45777888899999999
Q ss_pred cchhhhh-hcCccc-------chhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 025046 159 VSHQFEQ-KRGHVT-------TGVECYCKQHGVSEEEVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 159 ~S~~~E~-~~g~~~-------n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
..+..+. ..|... +.+.++ ..|.|.+..+++++++.+.++
T Consensus 218 LD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 218 IDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 8876432 223321 222222 357888888899998887775
No 44
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=65.22 E-value=21 Score=31.58 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=56.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc-CCcCChhHHhhhccchHHHHHHHhH
Q 025046 73 LRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM-CEVANKEAFEWISKNPKISRASSVI 151 (258)
Q Consensus 73 ~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
+..+.+....++.+-..+..|... ..||.++|+++-..-+|..+..++ .+|. --..+++..+.+ ..+-+.....
T Consensus 145 ~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~a 219 (352)
T 3nf2_A 145 TRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGGADERTADTL---EKYGYHLGLA 219 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 456677788899998888888643 378999999887666655543222 2221 011345544433 4567788888
Q ss_pred HHHhcCccchh
Q 025046 152 SRLMNDIVSHQ 162 (258)
Q Consensus 152 ~rL~NDi~S~~ 162 (258)
.-+.||+..+-
T Consensus 220 FQi~DD~ld~~ 230 (352)
T 3nf2_A 220 FQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 89999998774
No 45
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=58.28 E-value=6.3 Score=34.03 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhCC-CCCChhhhhccccccccchhHHHHHHhhc--CCcCChhHHhhhccchHHHHHHHhHHHHhcCcc
Q 025046 83 LVQMYFVQAKWSSEG-YVPTWEEYYPVGLVSGGYFMLATNSFLGM--CEVANKEAFEWISKNPKISRASSVISRLMNDIV 159 (258)
Q Consensus 83 ~~~~~~~Ea~w~~~~-~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
.+.+-..+..|...+ ..+|.++|+..-..-+|.-+..+. ..|. +. .+++..+.+ .++-.......-+.||+.
T Consensus 162 ~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~-~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 162 LVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASA-VLGGIIGG-GSDEEIERL---RKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp HHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 455666555554321 246889998875443333332221 2221 11 345544433 456778888999999999
Q ss_pred chhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025046 160 SHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNE 205 (258)
Q Consensus 160 S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
.+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 237 D~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 237 DVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 886543 23444433 4678888888888888876643
No 46
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=58.11 E-value=39 Score=30.06 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=53.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCCh-hhhhccccccccch-hHHH--HHHhhcCCcCChhH--HhhhccchHHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTW-EEYYPVGLVSGGYF-MLAT--NSFLGMCEVANKEA--FEWISKNPKIS 145 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~-eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e~--~~~~~~~~~l~ 145 (258)
.+..+.+.....+.+-..+..|...+..+++ ++|+++-..-+|.. +... +..+..| .+++. .+. ..++-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag--~~~~~~~~~~---l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE--IQVSSAQLNL---IEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSC--CCCCCSSTTT---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcC--CChhHHHHHH---HHHHH
Confidence 3456677778888888888887665534455 99998866555544 2211 1112223 23332 222 24577
Q ss_pred HHHHhHHHHhcCccchh
Q 025046 146 RASSVISRLMNDIVSHQ 162 (258)
Q Consensus 146 ~~~~~i~rL~NDi~S~~ 162 (258)
.......-+.||+..+-
T Consensus 244 ~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888899999998875
No 47
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=57.02 E-value=10 Score=25.91 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 025046 181 HGVSEEEVVKVFTEEVENAWKDM 203 (258)
Q Consensus 181 ~g~s~eeA~~~i~~~i~~~~k~l 203 (258)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999988643
No 48
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=56.60 E-value=32 Score=30.54 Aligned_cols=88 Identities=9% Similarity=-0.021 Sum_probs=56.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCC----CCChhhhhccccccccch-hHHHH--HHhhcCCcCChhHHhhhccchHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGY----VPTWEEYYPVGLVSGGYF-MLATN--SFLGMCEVANKEAFEWISKNPKI 144 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~----~Pt~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~l~~e~~~~~~~~~~l 144 (258)
.+..+.+.....+.+-+.+..|...+. .+|.++|+..-..-+|.. +..+. ..+..| ..+++..+.+ .++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~~~~~~~~~l---~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-IDSKEEHENA---KAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CccHHHHHHH---HHH
Confidence 345566777788888888888876543 579999998877655554 22111 111112 1344544433 457
Q ss_pred HHHHHhHHHHhcCccchhh
Q 025046 145 SRASSVISRLMNDIVSHQF 163 (258)
Q Consensus 145 ~~~~~~i~rL~NDi~S~~~ 163 (258)
-.......-+.||+..+..
T Consensus 246 g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7888889999999988754
No 49
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=53.82 E-value=50 Score=28.34 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=56.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc-CCcCChhHHhhhccchHHHHHHH
Q 025046 71 SYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM-CEVANKEAFEWISKNPKISRASS 149 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
..+..+.+.+...+.+-..+..|+.....||.++|+++-..-+|..+.++....+. +. .++ ...++-+...
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 34556778888999999999999876668999999998776666544322222111 11 121 1245677788
Q ss_pred hHHHHhcCccchh
Q 025046 150 VISRLMNDIVSHQ 162 (258)
Q Consensus 150 ~i~rL~NDi~S~~ 162 (258)
...-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 8888889988774
No 50
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=50.37 E-value=32 Score=30.33 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=54.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHh-----------hCCC----CCChhhhhccccccccch-hHHHH--HHhhcCCcCChh
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWS-----------SEGY----VPTWEEYYPVGLVSGGYF-MLATN--SFLGMCEVANKE 133 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~-----------~~~~----~Pt~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~l~~e 133 (258)
.+..+.+.....+.+-..+..|. ..|. .+|.++|+++-..-+|.. +..++ ..+..| ..+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCHH
Confidence 35566677788888888888886 3223 489999999877655554 32211 111112 12233
Q ss_pred HHhhhccchHHHHHHHhHHHHhcCccchhh
Q 025046 134 AFEWISKNPKISRASSVISRLMNDIVSHQF 163 (258)
Q Consensus 134 ~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~ 163 (258)
..+.+ ..+-.......-+.||+..+.-
T Consensus 231 ~~~~l---~~~g~~lG~aFQi~DD~lD~~~ 257 (362)
T 1yhl_A 231 EMNLV---ERVAHLIGEYFQVQDDVMDCFT 257 (362)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHhccC
Confidence 33322 4567788888999999988753
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=49.16 E-value=35 Score=29.87 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=55.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCC--CCCChhhhhccccccccchhHHHHHHhhc-CCcCChhHHhhhccchHHHHHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEG--YVPTWEEYYPVGLVSGGYFMLATNSFLGM-CEVANKEAFEWISKNPKISRAS 148 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~--~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~ 148 (258)
.+..+.+.....+.+-..+..|+... ..||.++|+++-..-+|..+.++...-+. +. .+++ . .....+-+..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~-~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH-G---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH-H---HHHHHHHHHH
Confidence 34556677788889999999997755 57899999998776665543322211111 11 1221 1 2335677888
Q ss_pred HhHHHHhcCccchhh
Q 025046 149 SVISRLMNDIVSHQF 163 (258)
Q Consensus 149 ~~i~rL~NDi~S~~~ 163 (258)
....-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 207 GIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999988753
No 52
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=49.12 E-value=49 Score=28.27 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhh-cCCcCChhHHhhhccchHHHHHHHhH
Q 025046 73 LRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLG-MCEVANKEAFEWISKNPKISRASSVI 151 (258)
Q Consensus 73 ~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
+..+.+.....+.+-..+..| .++|++.-..-+|.-+..++..-+ ++ .+++..+.+ .++-+.....
T Consensus 137 ~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~a 203 (289)
T 2azj_A 137 LNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGII 203 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHHH
Confidence 444555555666665544432 688998766555554432221111 23 444444433 4566778888
Q ss_pred HHHhcCccchhhhh----hcCcccchhhhhhhcCCCCHHHH-HHHHHHHHHHHHHHHH
Q 025046 152 SRLMNDIVSHQFEQ----KRGHVTTGVECYCKQHGVSEEEV-VKVFTEEVENAWKDMN 204 (258)
Q Consensus 152 ~rL~NDi~S~~~E~----~~g~~~n~V~~ym~e~g~s~eeA-~~~i~~~i~~~~k~ln 204 (258)
.-+.||+..+..+. ..|. .+...+| .+. ..++| ...+.+.++++.+.+.
T Consensus 204 FQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~~~--g~~~a~~~~a~~~~~~A~~~L~ 257 (289)
T 2azj_A 204 YQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-REG--KLEEYVRSVYLEYKQKYDELIS 257 (289)
T ss_dssp HHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-TTT--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCCChhhhcCc-ccHHHHH-HcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988875432 2222 3555556 333 45777 4567777777776664
No 53
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=47.02 E-value=34 Score=29.74 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=57.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.+.....+.+-..+..|.. +..||.++|++.-..-+|..+..+...-++--..+++..+.+ .++-......
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 206 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCIGMS 206 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 455566777888888888888854 336899999998776665554332222111111345544433 4567788888
Q ss_pred HHHhcCccchhh
Q 025046 152 SRLMNDIVSHQF 163 (258)
Q Consensus 152 ~rL~NDi~S~~~ 163 (258)
.-+.||+..+..
T Consensus 207 fQi~DD~ld~~~ 218 (325)
T 3aqb_B 207 YQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHhccC
Confidence 999999988753
No 54
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=43.96 E-value=77 Score=27.37 Aligned_cols=82 Identities=6% Similarity=0.009 Sum_probs=52.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHH--hhcCCcCChhHHhhhccchHHHHHHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSF--LGMCEVANKEAFEWISKNPKISRASS 149 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
.+..+.+.....+.+-..+..|.. +..||.++|++.-..-+|..+..+... +..|.. .+ . ...+-+...
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~---~---l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AK---I---YADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HH---H---HHHHHHHHH
Confidence 345566777888899988888864 356899999987665555443322211 111222 11 1 245667788
Q ss_pred hHHHHhcCccchh
Q 025046 150 VISRLMNDIVSHQ 162 (258)
Q Consensus 150 ~i~rL~NDi~S~~ 162 (258)
...-+.||+..+-
T Consensus 194 ~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 194 MAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccc
Confidence 8888899888774
No 55
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=42.23 E-value=24 Score=24.26 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 025046 181 HGVSEEEVVKVFTEEVENAWK 201 (258)
Q Consensus 181 ~g~s~eeA~~~i~~~i~~~~k 201 (258)
||++.+||...+.+.+.++..
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~ 30 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARA 30 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999998884
No 56
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=41.67 E-value=18 Score=30.77 Aligned_cols=93 Identities=10% Similarity=-0.025 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhc-CCcCChhHHhhhccchHHHHHHHhHHHHhcCccch
Q 025046 83 LVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGM-CEVANKEAFEWISKNPKISRASSVISRLMNDIVSH 161 (258)
Q Consensus 83 ~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~ 161 (258)
.+.+-..+..|.. ..||.++|+..-..-+|.-+..+. ..|. --..+++..+.+ .++-+......-+.||+..
T Consensus 151 ~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a~-~lGailaga~~~~~~~l---~~~G~~lG~aFQI~DD~~~- 223 (274)
T 3kra_B 151 MISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACGA-ACGAILGGAAEEEIQKL---RNFGLYQGTLRGMMEMKNS- 223 (274)
T ss_dssp HHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHhhcc-
Confidence 4555555555543 378999999865544444433222 2221 011345544433 4567788888889999711
Q ss_pred hhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 025046 162 QFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 162 ~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
..|++.+.+.++.+.+.+.+.
T Consensus 224 ----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 224 ----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp ----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 225566667777777776653
No 57
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=41.48 E-value=14 Score=26.80 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.4
Q ss_pred cchhhhhhhcCCCCHHHHHHHHHH
Q 025046 171 TTGVECYCKQHGVSEEEVVKVFTE 194 (258)
Q Consensus 171 ~n~V~~ym~e~g~s~eeA~~~i~~ 194 (258)
.--|...|.|.|+|.++|++.+.+
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355889999999999999988765
No 58
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=40.06 E-value=24 Score=24.71 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 025046 181 HGVSEEEVVKVFTEEVENAWK 201 (258)
Q Consensus 181 ~g~s~eeA~~~i~~~i~~~~k 201 (258)
||++.+||+..+.+.++++..
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~ 34 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTE 34 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999998874
No 59
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=36.67 E-value=67 Score=27.53 Aligned_cols=84 Identities=14% Similarity=0.056 Sum_probs=54.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHH--hhcCCcCChhHHhhhccchHHHHHH
Q 025046 71 SYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSF--LGMCEVANKEAFEWISKNPKISRAS 148 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 148 (258)
..+..+.+.....+.+-..+..|.... ||.++|++.-..-+|.-+..+... +..|. +++.+ ..+-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~~l------~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LGEDL------YNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CHHHH------HHHHHHH
Confidence 345667778888999999999997654 999999988776555543322211 11122 21211 3466777
Q ss_pred HhHHHHhcCccchhhh
Q 025046 149 SVISRLMNDIVSHQFE 164 (258)
Q Consensus 149 ~~i~rL~NDi~S~~~E 164 (258)
....-+.||+..+..+
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 8888888888887544
No 60
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=34.80 E-value=60 Score=28.81 Aligned_cols=89 Identities=8% Similarity=-0.024 Sum_probs=57.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCC----CCChhhhhccccccccch-hHHHHHHh-hcCCcCChhHHhhhccchHHH
Q 025046 72 YLRYDKEKMQELVQMYFVQAKWSSEGY----VPTWEEYYPVGLVSGGYF-MLATNSFL-GMCEVANKEAFEWISKNPKIS 145 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~----~Pt~eEYl~~~~~s~g~~-~~~~~~~~-~~g~~l~~e~~~~~~~~~~l~ 145 (258)
.+..+.+.....+.+-+.+..|...+. .+|.++|+..-..-+|.. +..+...- .++...+++..+.+ .++-
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l---~~~g 253 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANA---KKIL 253 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHH---HHHH
Confidence 345566777888888888888866544 389999999877655554 32211111 11221345544433 5677
Q ss_pred HHHHhHHHHhcCccchhh
Q 025046 146 RASSVISRLMNDIVSHQF 163 (258)
Q Consensus 146 ~~~~~i~rL~NDi~S~~~ 163 (258)
.......-+.||+..+..
T Consensus 254 ~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 254 LEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 888889999999988753
No 61
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=32.16 E-value=2.5e+02 Score=24.34 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCc
Q 025046 79 KMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDI 158 (258)
Q Consensus 79 ~~~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
....++.++. .+.. ...+|++|+..+-..+.|.--..++-.++....-++ ..+. ........+...-+.|=+
T Consensus 119 ~~~~m~~gm~---~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~---~~~~A~~lG~AlQltNil 190 (343)
T 3vj8_A 119 ICRRMGIGMA---EFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGE---DTERANSMGLFLQKTNII 190 (343)
T ss_dssp HHHHHHHHHH---HGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHH---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---Hhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhh---HHHHHHHHHHHHHHHHHH
Confidence 3344555552 2332 567888887777666666554444444443221111 1111 123344445555555555
Q ss_pred cchhhhhhcCcccchh-hhhhhcCCCCHH---------HHHHHHHHHHHHHHHHHH
Q 025046 159 VSHQFEQKRGHVTTGV-ECYCKQHGVSEE---------EVVKVFTEEVENAWKDMN 204 (258)
Q Consensus 159 ~S~~~E~~~g~~~n~V-~~ym~e~g~s~e---------eA~~~i~~~i~~~~k~ln 204 (258)
........+|-+ .+ .--|.++|++.+ .+..-+..++..+..-+.
T Consensus 191 RDv~eD~~~gR~--YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 191 RDYLEDQQGGRE--FWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIP 244 (343)
T ss_dssp HTHHHHHHTTCC--CSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhHHHHhCCCe--eCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 555666666754 22 224678888865 344555666666664443
No 62
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=32.07 E-value=35 Score=30.77 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHHhHHHHhcCccchhhhhh-cCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHH
Q 025046 147 ASSVISRLMNDIVSHQFEQK-RGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAW 200 (258)
Q Consensus 147 ~~~~i~rL~NDi~S~~~E~~-~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~ 200 (258)
....+-+|-+.+...+...+ |.-+.-+..++|..+|+|++||++.+++.--+.-
T Consensus 346 ~~~~~~~l~~~~~~l~~~l~~r~~i~~Akg~lm~~~~~~e~~A~~~l~~~sm~~~ 400 (423)
T 4akk_A 346 QAHELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQAWQALRKMAMDKN 400 (423)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHcC
Confidence 34445555565665555543 3345667778999999999999999998765544
No 63
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=31.19 E-value=1.2e+02 Score=21.47 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 025046 17 AYGFFEELKLFVEAVQRW 34 (258)
Q Consensus 17 ~~gt~~El~~~~~ai~rW 34 (258)
+.+.++|++.|..-+++.
T Consensus 4 a~~dpeElr~Fa~~L~~F 21 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERF 21 (94)
T ss_dssp -CCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 357899999999888763
No 64
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=31.00 E-value=96 Score=26.52 Aligned_cols=70 Identities=13% Similarity=0.270 Sum_probs=46.1
Q ss_pred Hhc-cCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhCC---CCCChhhhhc
Q 025046 32 QRW-DIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEG---YVPTWEEYYP 107 (258)
Q Consensus 32 ~rW-d~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~---~~Pt~eEYl~ 107 (258)
-|| |...-+..|+.|+.| +.+|+--...+..+.. |+ +.-|-+.|.+- .+||.+. --++..+|-+
T Consensus 48 ARWPD~~Nkd~tp~qmeYg-qSfy~~sR~aG~~IA~-G~---I~sF~eLW~~A-------~~WR~Sr~~~a~~~~~~Fa~ 115 (330)
T 1nh1_A 48 ARWPDDSSKSNTPENRAYC-QSMYNSIRSAGDEISR-GG---ITSFEELWGRA-------TEWRLSKLQRGEPLYSAFAS 115 (330)
T ss_dssp CCCSSCCCCCCSHHHHHHH-HHHHHHHHHHHHHHHT-TS---CCSHHHHHHHH-------HHHHHHTSCTTCTTHHHHTS
T ss_pred eccCCccccccCHHHHHHH-HHHHHHHHHhcccccc-Cc---cccHHHHHHHH-------HHHHHhhhcccCcchHHhcC
Confidence 489 456667889999887 5567777777766655 33 55677777643 5888766 4455666665
Q ss_pred cccccc
Q 025046 108 VGLVSG 113 (258)
Q Consensus 108 ~~~~s~ 113 (258)
-|....
T Consensus 116 ~R~~nt 121 (330)
T 1nh1_A 116 ERTSDT 121 (330)
T ss_dssp BCCTTS
T ss_pred ccCCCc
Confidence 555433
No 65
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=30.35 E-value=43 Score=25.38 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=26.5
Q ss_pred hhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHH
Q 025046 165 QKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKD 202 (258)
Q Consensus 165 ~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ 202 (258)
.++|+.. ++.-..=||++.+||...+.+.+.++...
T Consensus 39 Lr~G~~~--~~~~LDLHG~~~~EA~~~L~~fL~~a~~~ 74 (137)
T 3qd7_X 39 LRSGKYP--QQASLNLLRQPVEECRKMVFSFIQQALAD 74 (137)
T ss_dssp HHSCCCC--GGGEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCC--CCeEEECCCCCHHHHHHHHHHHHHHHHHC
Confidence 5677652 33233348999999999999999998843
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=30.24 E-value=1.2e+02 Score=20.09 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHH
Q 025046 20 FFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELV 84 (258)
Q Consensus 20 t~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~ 84 (258)
|.+|.+.|.+|+...+....+ -|..|+..+ |+. ..-.++.|+.+.
T Consensus 12 T~eE~k~fe~al~~~p~~t~~---------------RW~~IA~~l---gRt--~~eV~~~y~~L~ 56 (72)
T 2cqq_A 12 TEEDLSQLTRSMVKFPGGTPG---------------RWEKIAHEL---GRS--VTDVTTKAKQLK 56 (72)
T ss_dssp CHHHHHHHHHHHHHSCTTCTT---------------HHHHHHHHH---TSC--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCc---------------HHHHHHHHh---CCC--HHHHHHHHHHHH
Confidence 889999999999987654422 277777654 342 334444555443
No 67
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=29.86 E-value=16 Score=28.94 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=17.5
Q ss_pred hheecccccCCCCHHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ 29 (258)
+.++||+++.++|+.++.....
T Consensus 120 VLLVDDVitTG~Tl~aa~~~L~ 141 (186)
T 1l1q_A 120 VLLHDDVLATGGTLLAAIELCE 141 (186)
T ss_dssp EEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEecccccHHHHHHHHHHHH
Confidence 4579999999999998765443
No 68
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=29.78 E-value=22 Score=31.63 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCCC-Chhhhhccccc-cccchhH--HHHHHhhcCCcCChhHHhhhccchHHHHHHH
Q 025046 74 RYDKEKMQELVQMYFVQAKWSSEGYVP-TWEEYYPVGLV-SGGYFML--ATNSFLGMCEVANKEAFEWISKNPKISRASS 149 (258)
Q Consensus 74 ~~~~~~~~~~~~~~~~Ea~w~~~~~~P-t~eEYl~~~~~-s~g~~~~--~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
..+.+.....+.+-..+-.|...+..+ |.++|++.-.. |.+.... +....+..|...+++..+.+ ..+-....
T Consensus 171 ~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l---~~~g~~lG 247 (368)
T 2q58_A 171 KIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLI---EAILYKLG 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTH---HHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHH---HHHHHHHH
Confidence 344455556666777677776655554 78889987554 4433221 22222233434444444332 45677888
Q ss_pred hHHHHhcCccchhhh
Q 025046 150 VISRLMNDIVSHQFE 164 (258)
Q Consensus 150 ~i~rL~NDi~S~~~E 164 (258)
...-+.||+..+-..
T Consensus 248 ~aFQI~DDiLD~~~g 262 (368)
T 2q58_A 248 EFYQVHNDVSDYLFN 262 (368)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhcccC
Confidence 899999999887543
No 69
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=29.47 E-value=35 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=23.5
Q ss_pred CcccchhhhhhhcCCCCHHHHHHHHHHHH
Q 025046 168 GHVTTGVECYCKQHGVSEEEVVKVFTEEV 196 (258)
Q Consensus 168 g~~~n~V~~ym~e~g~s~eeA~~~i~~~i 196 (258)
|...|+|..+|+-.|+|-.||++.+.+..
T Consensus 65 g~gGd~i~fv~~~~~~sf~eA~~~La~~~ 93 (103)
T 1d0q_A 65 GAGGNAFTFLMDIEGIPFVEAAKRLAAKA 93 (103)
T ss_dssp CCEECHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44458899999888999999999888753
No 70
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=28.16 E-value=17 Score=28.11 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=16.9
Q ss_pred hheecccccCCCCHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFV 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 123 VllVDDvitTG~Tl~~~~~~L 143 (175)
T 1vch_A 123 VVLVSDVVASGETMRAMEKMV 143 (175)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEeccccchHHHHHHHHHH
Confidence 568999999999988875443
No 71
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A*
Probab=27.67 E-value=25 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.8
Q ss_pred hheecccccCCCCHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFV 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~ 28 (258)
+.++||+.|.++|+.++....
T Consensus 84 VliVDDii~TG~Tl~~a~~~l 104 (152)
T 1nul_A 84 FIVIDDLVDTGGTAVAIREMY 104 (152)
T ss_dssp EEEEEEEECTTSSHHHHHHHC
T ss_pred EEEEEeecCchHHHHHHHHHH
Confidence 357999999999998875543
No 72
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=27.33 E-value=17 Score=27.42 Aligned_cols=21 Identities=29% Similarity=0.175 Sum_probs=16.6
Q ss_pred hheecccccCCCCHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFV 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~ 28 (258)
+.++||++|.++|+.++....
T Consensus 86 VllVDDvitTG~Tl~~a~~~L 106 (153)
T 1vdm_A 86 VVIVDDVSDTGKTLEVVIEEV 106 (153)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEEecccCChHHHHHHHHHH
Confidence 457999999999988875444
No 73
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=26.13 E-value=1.1e+02 Score=27.16 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhh---cCCcCChhHHhhhccchHHHHHHHhHHHHhcC
Q 025046 81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLG---MCEVANKEAFEWISKNPKISRASSVISRLMND 157 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~---~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 157 (258)
...+.+-+.+..|...+ .||.++|+++-..-+|...+.....+| .| .+++..+.+ ..+-+...+..-+.||
T Consensus 185 ~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~l---~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 185 TEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDAL---LHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 46677878888886644 679999998866555544211111121 12 344544433 4577788889999999
Q ss_pred ccchh
Q 025046 158 IVSHQ 162 (258)
Q Consensus 158 i~S~~ 162 (258)
+..+-
T Consensus 259 iLd~~ 263 (380)
T 3lk5_A 259 LLGVF 263 (380)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 98874
No 74
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=25.70 E-value=23 Score=26.47 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=20.4
Q ss_pred cchhhhhhhcCCCCHHHHHHHHHHH
Q 025046 171 TTGVECYCKQHGVSEEEVVKVFTEE 195 (258)
Q Consensus 171 ~n~V~~ym~e~g~s~eeA~~~i~~~ 195 (258)
...+.+||...|+|.++|++.++..
T Consensus 107 g~~~a~~l~~~g~~~~~a~~~~~~~ 131 (151)
T 1xri_A 107 GCLVGCLRKLQKWCLTSIFDEYQRF 131 (151)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4566789998999999999877654
No 75
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU genomics, PSI, protein structure initative, midwest center structural genomics; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=25.67 E-value=20 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.160 Sum_probs=17.4
Q ss_pred hheecccccCCCCHHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ 29 (258)
+.++||+++.++|+.++.....
T Consensus 123 VllVDDvitTG~Tl~~a~~~L~ 144 (197)
T 1y0b_A 123 VLIIDDFLANGQAAHGLVSIVK 144 (197)
T ss_dssp EEEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEcccccCHHHHHHHHHHH
Confidence 4579999999999988755443
No 76
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=24.06 E-value=78 Score=17.55 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHh
Q 025046 17 AYGFFEELKLFVEAVQR 33 (258)
Q Consensus 17 ~~gt~~El~~~~~ai~r 33 (258)
++||++||+.+-+....
T Consensus 10 vggtpeelkklkeeakk 26 (36)
T 2ki0_A 10 VGGTPEELKKLKEEAKK 26 (36)
T ss_dssp BCCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 57899999988877664
No 77
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=23.82 E-value=23 Score=27.90 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=16.8
Q ss_pred hheecccccCCCCHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFV 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 125 VLlVDDvitTG~Tl~~~~~~L 145 (187)
T 1g2q_A 125 VIIVDDIIATGGSAAAAGELV 145 (187)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHH
Confidence 457999999999998875544
No 78
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding P pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Probab=23.67 E-value=24 Score=27.53 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=17.3
Q ss_pred hheecccccCCCCHHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ 29 (258)
+.++||+++.++|+.++.....
T Consensus 101 VllVDDvitTG~Tl~~a~~~L~ 122 (181)
T 1a3c_A 101 VILVDDVLYTGRTVRAGMDALV 122 (181)
T ss_dssp EEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEeCccCcHHHHHHHHHHHH
Confidence 4579999999999988755443
No 79
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=23.59 E-value=52 Score=25.01 Aligned_cols=24 Identities=8% Similarity=-0.139 Sum_probs=18.1
Q ss_pred cchhhh-hhhcCCCCHHHHHHHHHH
Q 025046 171 TTGVEC-YCKQHGVSEEEVVKVFTE 194 (258)
Q Consensus 171 ~n~V~~-ym~e~g~s~eeA~~~i~~ 194 (258)
+..|.+ +|+.+|+|.++|++.+++
T Consensus 102 ~~vv~ayLm~~~~~s~~~A~~~v~~ 126 (161)
T 3emu_A 102 PAIVIAFLMYYQRLSFINAFNKVQG 126 (161)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345544 467789999999998876
No 80
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=23.49 E-value=24 Score=27.57 Aligned_cols=22 Identities=9% Similarity=-0.093 Sum_probs=17.3
Q ss_pred hheecccccCCCCHHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ 29 (258)
+.++||+++.++|+.++.....
T Consensus 99 VllVDDvitTG~Tl~~a~~~L~ 120 (181)
T 1ufr_A 99 IVLVDDVLYTGRTARAALDALI 120 (181)
T ss_dssp EEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHH
Confidence 4579999999999988755443
No 81
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=23.29 E-value=24 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=16.8
Q ss_pred hheecccccCCCCHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFV 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 123 VllVDDvitTG~Tl~~~~~~L 143 (180)
T 1zn8_A 123 VVVVDDLLATGGTMNAACELL 143 (180)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEcCCcccHHHHHHHHHHH
Confidence 457999999999998875543
No 82
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=22.85 E-value=25 Score=27.51 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=17.1
Q ss_pred hheecccccCCCCHHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ 29 (258)
+.++||++|.++|+.++.....
T Consensus 109 VllVDDvitTG~Tl~~~~~~L~ 130 (178)
T 2yzk_A 109 VVVVDDVATTGTSIAKSIEVLR 130 (178)
T ss_dssp EEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEEeccCCcHHHHHHHHHHH
Confidence 3579999999999988755443
No 83
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=22.56 E-value=95 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.6
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHHH
Q 025046 174 VECYCKQHGVSEEEVVKVFTEEVEN 198 (258)
Q Consensus 174 V~~ym~e~g~s~eeA~~~i~~~i~~ 198 (258)
...|-++.|+|+++|++.+.+..+.
T Consensus 61 A~a~a~~~~~s~~eal~rI~egF~~ 85 (101)
T 3ic3_A 61 ARSYARESEYTEDEALERIVEMFEA 85 (101)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3467788999999999988776553
No 84
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=22.47 E-value=2.6e+02 Score=23.83 Aligned_cols=89 Identities=9% Similarity=0.161 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhccCccc-CCCChh-HHHHHHHHHHHHHHHHHHH------HH-hCCCcchhhhHHHHHHHHHHHHHH
Q 025046 20 FFEELKLFVEAVQRWDIGAM-DILPEY-MKVLYKALLDTYNEVEQDL------AK-EGRSSYLRYDKEKMQELVQMYFVQ 90 (258)
Q Consensus 20 t~~El~~~~~ai~rWd~~~~-~~lp~~-~k~~~~al~~~~~ei~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~E 90 (258)
+.+|+..|.+.+++|..... -+.|+. ..-++..+.++.+.++... .. ..-...-++....++....+|++.
T Consensus 104 ~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~ell~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~~ 183 (284)
T 4dhi_B 104 DRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQ 183 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 46789999999988865433 244543 3345555555555553221 00 000012234444555566777776
Q ss_pred HHHhhCCCCC---Chhhhhcc
Q 025046 91 AKWSSEGYVP---TWEEYYPV 108 (258)
Q Consensus 91 a~w~~~~~~P---t~eEYl~~ 108 (258)
....-...++ ++++|.+.
T Consensus 184 ~~d~f~pFi~~~~~v~~yC~~ 204 (284)
T 4dhi_B 184 NSEEYAPFIDEGMTVAQYCEQ 204 (284)
T ss_dssp THHHHGGGSCTTCCHHHHHHH
T ss_pred CHHHHHhhcCCCCCHHHHHHH
Confidence 5555555553 68888763
No 85
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=22.46 E-value=25 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.2
Q ss_pred hheecccccCCCCHHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ 29 (258)
+.++||+++.++|+.++.....
T Consensus 129 VLlVDDvitTG~Tl~~a~~~L~ 150 (190)
T 2dy0_A 129 VLVVDDLLATGGTIEATVKLIR 150 (190)
T ss_dssp EEEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEccccchHHHHHHHHHHH
Confidence 4579999999999988755443
No 86
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.44A {Corynebacterium diphtheriae}
Probab=21.84 E-value=28 Score=27.26 Aligned_cols=22 Identities=9% Similarity=-0.084 Sum_probs=17.3
Q ss_pred hheecccccCCCCHHHHHHHHH
Q 025046 8 ASIIDDTFDAYGFFEELKLFVE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~~El~~~~~ 29 (258)
+.++||+++.++|+.++.....
T Consensus 117 VllVDDvitTG~Tl~~~~~~L~ 138 (180)
T 2p1z_A 117 VLVVEDTTTTGNSPLTAVKALR 138 (180)
T ss_dssp EEEEEEECSSSHHHHHHHHHHH
T ss_pred EEEEEeccCCcHHHHHHHHHHH
Confidence 4579999999999988755443
No 87
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=20.06 E-value=2.1e+02 Score=19.41 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=32.7
Q ss_pred HHHHHHHhhcC--CCCCcHHHHHHHHHhhhhhhhhhccCCCCCCcHHHHHHHHH
Q 025046 199 AWKDMNEEFLR--PTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAA 250 (258)
Q Consensus 199 ~~k~ln~e~l~--~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~k~~i~~ 250 (258)
.|+.+-+.... +..-+..|++..-|+.|....-+...-|=..|.++.+.|.+
T Consensus 22 ~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~ 75 (83)
T 2ckx_A 22 RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLA 75 (83)
T ss_dssp CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHH
T ss_pred CcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHH
Confidence 68887776331 45567788888888888766555434443445556666654
Done!