Query 025047
Match_columns 258
No_of_seqs 155 out of 1265
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 1.9E-49 4E-54 352.7 29.3 243 8-255 49-296 (297)
2 COG5074 t-SNARE complex subuni 100.0 1.6E-35 3.5E-40 248.9 26.8 235 4-252 37-274 (280)
3 KOG0811 SNARE protein PEP12/VA 100.0 2E-30 4.3E-35 227.3 26.6 230 8-251 34-266 (269)
4 KOG0809 SNARE protein TLG2/Syn 100.0 9.6E-29 2.1E-33 215.0 22.9 226 8-248 74-301 (305)
5 COG5325 t-SNARE complex subuni 99.9 5.2E-21 1.1E-25 165.5 24.0 94 159-253 189-282 (283)
6 cd00179 SynN Syntaxin N-termin 99.8 6.7E-17 1.4E-21 131.4 16.6 128 8-142 22-149 (151)
7 KOG0812 SNARE protein SED5/Syn 99.6 1.3E-13 2.9E-18 120.0 23.4 200 40-246 80-308 (311)
8 PF05739 SNARE: SNARE domain; 99.5 1.8E-13 3.9E-18 95.2 10.2 63 162-224 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.4 3.2E-12 7E-17 87.4 7.8 59 161-219 2-60 (60)
10 smart00397 t_SNARE Helical reg 99.2 7.6E-11 1.6E-15 82.0 9.2 63 157-219 4-66 (66)
11 smart00503 SynN Syntaxin N-ter 99.1 3.2E-09 7E-14 82.3 12.2 77 27-108 41-117 (117)
12 KOG3202 SNARE protein TLG1/Syn 99.0 3.7E-07 8.1E-12 79.2 23.2 157 72-247 76-233 (235)
13 KOG3894 SNARE protein Syntaxin 98.7 1.1E-05 2.3E-10 72.1 21.4 88 156-243 223-310 (316)
14 PF00804 Syntaxin: Syntaxin; 98.6 6.9E-07 1.5E-11 67.2 10.0 80 9-93 24-103 (103)
15 PF14523 Syntaxin_2: Syntaxin- 98.6 1.9E-06 4.1E-11 65.3 12.2 92 7-108 8-99 (102)
16 KOG3385 V-SNARE [Intracellular 97.7 0.00035 7.6E-09 53.7 8.9 81 163-245 34-114 (118)
17 PF00957 Synaptobrevin: Synapt 97.6 0.0028 6E-08 46.8 12.4 57 166-225 4-60 (89)
18 KOG0810 SNARE protein Syntaxin 97.1 0.22 4.8E-06 45.1 21.4 79 166-244 200-282 (297)
19 PF09753 Use1: Membrane fusion 97.0 0.022 4.7E-07 50.2 13.5 73 176-251 178-250 (251)
20 KOG0860 Synaptobrevin/VAMP-lik 96.9 0.032 6.9E-07 43.2 11.8 57 165-225 29-86 (116)
21 KOG1666 V-SNARE [Intracellular 96.4 0.53 1.1E-05 40.3 24.0 79 167-246 137-215 (220)
22 COG5325 t-SNARE complex subuni 95.9 1.2 2.6E-05 39.6 23.1 89 155-247 192-280 (283)
23 KOG0811 SNARE protein PEP12/VA 95.7 1.5 3.2E-05 39.2 21.8 61 165-225 173-233 (269)
24 COG5074 t-SNARE complex subuni 95.5 1.6 3.4E-05 38.0 21.4 94 160-253 173-270 (280)
25 KOG0809 SNARE protein TLG2/Syn 94.6 3.3 7.2E-05 37.2 17.6 197 27-245 102-301 (305)
26 KOG3065 SNAP-25 (synaptosome-a 94.2 0.24 5.2E-06 44.3 7.9 56 163-218 216-271 (273)
27 PF05478 Prominin: Prominin; 94.2 7.9 0.00017 39.9 25.1 54 167-222 359-412 (806)
28 PF03904 DUF334: Domain of unk 92.4 6.8 0.00015 33.9 18.8 48 40-100 44-91 (230)
29 PF00957 Synaptobrevin: Synapt 92.1 3.6 7.7E-05 30.0 12.8 23 155-177 21-43 (89)
30 PF10717 ODV-E18: Occlusion-de 90.9 0.32 6.8E-06 35.3 3.4 17 241-257 35-51 (85)
31 PF03908 Sec20: Sec20; InterP 87.5 9.5 0.00021 28.1 12.3 33 189-221 32-64 (92)
32 KOG0860 Synaptobrevin/VAMP-lik 84.1 18 0.00038 28.1 9.9 45 202-248 69-113 (116)
33 PF04505 Dispanin: Interferon- 80.3 1.2 2.7E-05 32.4 1.9 37 207-243 44-80 (82)
34 PF12911 OppC_N: N-terminal TM 75.7 7.7 0.00017 25.5 4.7 29 224-252 13-41 (56)
35 PF00523 Fusion_gly: Fusion gl 75.0 4.6 9.9E-05 39.2 4.6 30 198-227 436-465 (490)
36 PF09177 Syntaxin-6_N: Syntaxi 72.9 32 0.0007 25.4 8.0 52 8-62 14-65 (97)
37 PRK10884 SH3 domain-containing 72.6 61 0.0013 27.8 14.3 40 179-218 118-157 (206)
38 PF10779 XhlA: Haemolysin XhlA 72.1 31 0.00067 24.1 10.3 41 192-236 19-59 (71)
39 PRK14762 membrane protein; Pro 71.8 6.5 0.00014 21.9 2.8 19 231-249 5-23 (27)
40 PF09753 Use1: Membrane fusion 71.4 45 0.00098 29.2 9.8 82 157-241 154-237 (251)
41 PF10717 ODV-E18: Occlusion-de 68.2 9 0.0002 27.9 3.8 22 230-251 27-48 (85)
42 PHA02975 hypothetical protein; 68.2 7.6 0.00017 27.2 3.2 17 222-238 37-53 (69)
43 PF14575 EphA2_TM: Ephrin type 66.9 9.8 0.00021 27.1 3.8 16 230-245 2-17 (75)
44 PF01102 Glycophorin_A: Glycop 65.2 7.2 0.00016 30.6 3.0 23 229-251 68-90 (122)
45 PRK08307 stage III sporulation 63.9 22 0.00048 29.4 5.9 32 213-244 138-170 (171)
46 PF06072 Herpes_US9: Alphaherp 63.5 25 0.00055 23.9 4.9 14 210-223 9-22 (60)
47 PHA02819 hypothetical protein; 62.7 12 0.00026 26.3 3.4 8 228-235 45-52 (71)
48 PHA03054 IMV membrane protein; 62.7 12 0.00026 26.4 3.4 8 228-235 47-54 (72)
49 TIGR02833 spore_III_AB stage I 62.0 25 0.00055 29.0 6.0 31 213-243 137-168 (170)
50 PF04102 SlyX: SlyX; InterPro 61.4 52 0.0011 22.9 6.9 48 165-212 4-51 (69)
51 KOG1693 emp24/gp25L/p24 family 61.0 40 0.00087 28.7 6.9 24 229-252 177-200 (209)
52 PHA02650 hypothetical protein; 60.9 15 0.00032 26.5 3.7 8 228-235 48-55 (81)
53 KOG0859 Synaptobrevin/VAMP-lik 60.0 24 0.00052 30.1 5.4 54 167-223 127-180 (217)
54 KOG2678 Predicted membrane pro 59.9 1.2E+02 0.0026 26.4 10.7 78 168-248 154-232 (244)
55 PRK04325 hypothetical protein; 59.6 60 0.0013 23.0 8.2 45 167-211 11-55 (74)
56 PF11166 DUF2951: Protein of u 59.4 72 0.0016 23.8 12.0 79 166-250 12-93 (98)
57 PF09889 DUF2116: Uncharacteri 59.4 35 0.00075 23.3 5.2 18 229-246 37-54 (59)
58 PF14812 PBP1_TM: Transmembran 59.1 0.52 1.1E-05 34.3 -4.0 17 223-239 61-77 (81)
59 PF05399 EVI2A: Ectropic viral 58.3 12 0.00027 32.0 3.5 21 227-247 129-149 (227)
60 PHA02844 putative transmembran 58.3 17 0.00037 25.9 3.6 9 227-235 46-54 (75)
61 PF11239 DUF3040: Protein of u 58.2 20 0.00044 25.7 4.2 20 194-213 10-29 (82)
62 PF09125 COX2-transmemb: Cytoc 57.7 24 0.00052 21.6 3.6 18 227-244 14-31 (38)
63 PF00804 Syntaxin: Syntaxin; 57.4 19 0.00042 26.1 4.1 22 37-58 8-29 (103)
64 PHA02692 hypothetical protein; 56.9 17 0.00036 25.6 3.3 8 228-235 44-51 (70)
65 PF05957 DUF883: Bacterial pro 56.3 77 0.0017 23.2 11.7 14 225-238 70-83 (94)
66 PRK15041 methyl-accepting chem 55.4 2.1E+02 0.0046 28.0 12.5 53 159-211 434-486 (554)
67 PF12669 P12: Virus attachment 54.9 12 0.00026 25.3 2.3 10 246-255 18-27 (58)
68 PF05568 ASFV_J13L: African sw 54.9 11 0.00023 30.6 2.4 19 232-250 34-52 (189)
69 PF02346 Vac_Fusion: Chordopox 54.8 64 0.0014 21.8 6.4 45 166-210 2-46 (57)
70 PRK09400 secE preprotein trans 54.7 62 0.0013 22.1 5.9 48 199-246 4-51 (61)
71 PF06789 UPF0258: Uncharacteri 53.9 3.3 7.3E-05 33.6 -0.6 17 212-228 115-131 (159)
72 PF12352 V-SNARE_C: Snare regi 53.1 68 0.0015 21.6 10.1 55 167-221 10-64 (66)
73 PF12911 OppC_N: N-terminal TM 53.1 14 0.0003 24.2 2.4 22 232-253 17-38 (56)
74 PF10498 IFT57: Intra-flagella 52.5 1.8E+02 0.0038 27.2 10.4 72 6-81 263-337 (359)
75 PF06143 Baculo_11_kDa: Baculo 52.1 21 0.00046 26.1 3.4 10 214-223 20-29 (84)
76 PTZ00478 Sec superfamily; Prov 51.6 66 0.0014 23.4 5.8 52 196-247 14-65 (81)
77 PF00523 Fusion_gly: Fusion gl 51.0 13 0.00027 36.2 2.7 8 89-96 187-194 (490)
78 PRK10404 hypothetical protein; 50.8 1.1E+02 0.0023 23.2 10.9 18 219-237 72-89 (101)
79 PRK13865 type IV secretion sys 50.4 66 0.0014 28.0 6.8 24 229-252 41-64 (229)
80 KOG3202 SNARE protein TLG1/Syn 50.4 1.1E+02 0.0024 26.8 8.2 20 187-206 146-165 (235)
81 PRK10573 type IV pilin biogene 49.5 2.2E+02 0.0048 26.4 11.1 38 170-207 111-148 (399)
82 PRK00295 hypothetical protein; 49.2 88 0.0019 21.7 7.8 45 167-211 7-51 (68)
83 PF04210 MtrG: Tetrahydrometha 49.0 92 0.002 21.9 7.6 14 230-243 49-62 (70)
84 KOG3498 Preprotein translocase 48.4 76 0.0016 22.0 5.4 52 196-247 2-53 (67)
85 PRK01844 hypothetical protein; 48.0 29 0.00062 24.6 3.4 16 229-244 4-19 (72)
86 KOG1666 V-SNARE [Intracellular 47.6 72 0.0016 27.5 6.4 24 36-59 36-59 (220)
87 COG4640 Predicted membrane pro 47.4 29 0.00064 32.6 4.3 43 211-253 31-76 (465)
88 cd00193 t_SNARE Soluble NSF (N 47.0 75 0.0016 20.3 8.1 53 170-222 4-56 (60)
89 KOG3065 SNAP-25 (synaptosome-a 46.9 61 0.0013 29.1 6.2 41 177-217 91-131 (273)
90 PRK10132 hypothetical protein; 46.7 1.3E+02 0.0028 23.0 11.2 12 227-238 85-96 (108)
91 PHA02673 ORF109 EEV glycoprote 46.7 25 0.00054 28.8 3.3 18 215-232 17-34 (161)
92 COG1314 SecG Preprotein transl 46.5 29 0.00063 25.5 3.4 17 238-254 10-26 (86)
93 PRK09793 methyl-accepting prot 46.1 2.9E+02 0.0062 26.8 12.5 54 160-213 431-484 (533)
94 PF09548 Spore_III_AB: Stage I 45.5 74 0.0016 26.1 6.2 31 213-243 137-168 (170)
95 TIGR01294 P_lamban phospholamb 45.2 52 0.0011 21.1 3.9 11 230-240 35-45 (52)
96 PF10027 DUF2269: Predicted in 44.7 30 0.00066 27.6 3.6 33 219-251 118-150 (150)
97 PF04272 Phospholamban: Phosph 44.3 45 0.00099 21.4 3.5 12 230-241 35-46 (52)
98 PF10749 DUF2534: Protein of u 44.0 33 0.00072 24.9 3.3 20 225-244 10-29 (85)
99 KOG3850 Predicted membrane pro 43.9 2.9E+02 0.0062 26.2 18.5 13 82-94 262-274 (455)
100 PHA02844 putative transmembran 43.8 27 0.00059 24.9 2.7 27 222-248 38-64 (75)
101 PRK02793 phi X174 lysis protei 43.7 1.1E+02 0.0025 21.4 7.8 47 165-211 8-54 (72)
102 PRK15048 methyl-accepting chem 43.5 3.2E+02 0.0068 26.5 12.5 52 160-211 433-484 (553)
103 PRK06870 secG preprotein trans 43.3 34 0.00074 24.3 3.3 12 239-250 11-22 (76)
104 COG2443 Sss1 Preprotein transl 43.1 1.1E+02 0.0024 21.2 6.2 30 197-226 3-32 (65)
105 PHA02819 hypothetical protein; 42.9 44 0.00095 23.6 3.6 29 220-248 34-62 (71)
106 PF01299 Lamp: Lysosome-associ 42.8 23 0.0005 32.0 2.9 19 239-257 284-302 (306)
107 COG3352 FlaC Putative archaeal 42.5 1.9E+02 0.0041 23.6 8.6 67 152-218 73-140 (157)
108 PF12606 RELT: Tumour necrosis 42.1 42 0.00091 22.1 3.3 13 239-251 14-26 (50)
109 TIGR00327 secE_euk_arch protei 42.0 91 0.002 21.4 5.1 44 203-246 4-47 (61)
110 PF03653 UPF0093: Uncharacteri 41.9 26 0.00057 28.2 2.9 26 227-252 122-147 (147)
111 PF11598 COMP: Cartilage oligo 41.5 66 0.0014 20.7 4.1 28 169-196 5-32 (45)
112 PHA02650 hypothetical protein; 40.8 31 0.00067 24.9 2.7 24 225-248 42-65 (81)
113 PRK00736 hypothetical protein; 40.3 1.2E+02 0.0027 21.0 7.8 45 167-211 7-51 (68)
114 PRK00523 hypothetical protein; 40.2 45 0.00096 23.7 3.4 18 232-249 4-21 (72)
115 COG4068 Uncharacterized protei 40.1 46 0.00099 22.7 3.3 8 216-223 33-40 (64)
116 TIGR00810 secG protein translo 40.0 39 0.00085 23.7 3.2 8 243-250 14-21 (73)
117 PF00517 GP41: Retroviral enve 39.6 1.1E+02 0.0024 26.0 6.5 15 163-177 106-120 (204)
118 PF06789 UPF0258: Uncharacteri 39.4 18 0.0004 29.4 1.5 33 216-248 122-154 (159)
119 PF10661 EssA: WXG100 protein 39.4 47 0.001 26.8 3.9 19 227-245 117-135 (145)
120 PF12575 DUF3753: Protein of u 39.2 34 0.00073 24.3 2.6 23 224-246 40-62 (72)
121 PF03597 CcoS: Cytochrome oxid 39.0 43 0.00094 21.5 2.9 24 231-254 4-27 (45)
122 PRK04406 hypothetical protein; 38.7 1.4E+02 0.0031 21.2 7.7 46 165-210 11-56 (75)
123 PF14147 Spore_YhaL: Sporulati 38.4 37 0.00081 22.4 2.6 20 228-247 2-21 (52)
124 KOG3251 Golgi SNAP receptor co 38.3 2.6E+02 0.0057 24.1 22.9 28 32-59 29-56 (213)
125 PRK13673 hypothetical protein; 37.3 80 0.0017 24.6 4.7 29 211-239 74-102 (118)
126 PRK02119 hypothetical protein; 36.9 1.5E+02 0.0032 20.9 8.0 47 165-211 9-55 (73)
127 PRK13872 conjugal transfer pro 36.5 1.2E+02 0.0025 26.2 6.3 7 246-252 59-65 (228)
128 COG4575 ElaB Uncharacterized c 36.4 1.9E+02 0.0042 22.0 10.1 10 227-236 82-91 (104)
129 PRK13887 conjugal transfer pro 36.2 1.1E+02 0.0025 26.7 6.3 26 227-252 53-79 (250)
130 PHA02513 V1 structural protein 36.1 71 0.0015 24.7 4.2 22 230-251 68-89 (135)
131 PF06783 UPF0239: Uncharacteri 35.5 59 0.0013 23.8 3.5 24 229-252 21-44 (85)
132 TIGR00847 ccoS cytochrome oxid 35.4 56 0.0012 21.6 3.1 24 231-254 5-28 (51)
133 PF09548 Spore_III_AB: Stage I 35.3 1.5E+02 0.0033 24.2 6.5 23 219-241 147-169 (170)
134 PF01601 Corona_S2: Coronaviru 35.2 17 0.00038 35.9 1.0 31 29-59 291-321 (610)
135 TIGR01477 RIFIN variant surfac 35.1 2.3E+02 0.005 26.4 8.1 21 27-47 57-77 (353)
136 PRK01026 tetrahydromethanopter 34.8 1.7E+02 0.0038 21.0 8.0 12 194-205 23-34 (77)
137 KOG3251 Golgi SNAP receptor co 34.7 2.4E+02 0.0053 24.3 7.7 23 40-62 30-52 (213)
138 PF01788 PsbJ: PsbJ; InterPro 34.7 1.2E+02 0.0025 19.0 4.2 27 228-254 9-35 (40)
139 TIGR00701 conserved hypothetic 34.5 37 0.0008 27.3 2.6 25 228-252 117-141 (142)
140 PHA03054 IMV membrane protein; 34.4 46 0.001 23.5 2.7 24 225-248 41-64 (72)
141 PF00015 MCPsignal: Methyl-acc 34.3 2.6E+02 0.0056 22.8 11.7 60 159-218 129-188 (213)
142 PF07432 Hc1: Histone H1-like 34.1 2E+02 0.0044 22.3 6.4 45 177-221 2-46 (123)
143 PF08412 Ion_trans_N: Ion tran 33.8 90 0.0019 22.4 4.2 26 228-253 46-71 (77)
144 PF09164 VitD-bind_III: Vitami 33.8 81 0.0018 22.0 3.8 28 106-134 13-40 (68)
145 PTZ00046 rifin; Provisional 33.1 4E+02 0.0086 24.9 9.3 29 26-54 53-81 (358)
146 PF07010 Endomucin: Endomucin; 33.0 53 0.0011 28.6 3.4 7 251-257 214-220 (259)
147 PF11446 DUF2897: Protein of u 32.5 75 0.0016 21.3 3.4 18 229-246 6-23 (55)
148 COG3763 Uncharacterized protei 32.3 72 0.0016 22.5 3.4 17 229-245 4-20 (71)
149 PF06388 DUF1075: Protein of u 32.2 74 0.0016 25.8 4.0 26 225-250 90-115 (146)
150 TIGR02120 GspF general secreti 32.1 4.1E+02 0.009 24.6 11.0 42 170-211 113-154 (399)
151 PF04888 SseC: Secretion syste 32.1 3.3E+02 0.0073 24.3 8.8 23 203-225 33-55 (306)
152 PF07457 DUF1516: Protein of u 31.5 84 0.0018 24.1 4.0 30 211-240 76-105 (110)
153 smart00502 BBC B-Box C-termina 31.3 2.2E+02 0.0047 21.1 8.5 66 155-220 21-88 (127)
154 TIGR02302 aProt_lowcomp conser 31.3 6.4E+02 0.014 26.5 11.7 22 177-198 621-642 (851)
155 PRK05529 cell division protein 30.9 49 0.0011 29.1 3.0 7 218-224 26-32 (255)
156 PF06422 PDR_CDR: CDR ABC tran 30.8 1.1E+02 0.0024 23.0 4.6 16 211-226 32-47 (103)
157 COG3736 VirB8 Type IV secretor 30.6 1.5E+02 0.0033 26.0 6.0 43 209-251 23-66 (239)
158 PF15106 TMEM156: TMEM156 prot 30.6 44 0.00096 28.7 2.5 22 228-250 175-196 (226)
159 KOG0972 Huntingtin interacting 30.6 2E+02 0.0043 26.2 6.7 30 30-59 228-257 (384)
160 COG2966 Uncharacterized conser 30.6 82 0.0018 27.8 4.4 44 194-237 91-134 (250)
161 PF05283 MGC-24: Multi-glycosy 30.2 53 0.0011 27.7 2.9 26 229-254 161-186 (186)
162 PF13198 DUF4014: Protein of u 29.9 71 0.0015 22.6 3.0 8 221-228 8-15 (72)
163 PF08693 SKG6: Transmembrane a 29.8 49 0.0011 20.7 2.0 7 248-254 32-38 (40)
164 KOG3208 SNARE protein GS28 [In 29.5 3.8E+02 0.0083 23.3 18.2 38 187-225 171-208 (231)
165 KOG2546 Abl interactor ABI-1, 29.4 1.9E+02 0.0042 27.6 6.7 49 162-210 52-100 (483)
166 PF05739 SNARE: SNARE domain; 28.9 1.7E+02 0.0037 19.1 8.8 51 164-214 10-60 (63)
167 KOG4331 Polytopic membrane pro 28.8 6.9E+02 0.015 26.1 16.0 25 180-204 373-397 (865)
168 COG1930 CbiN ABC-type cobalt t 28.5 87 0.0019 23.3 3.4 11 234-244 10-20 (97)
169 PF14575 EphA2_TM: Ephrin type 28.4 48 0.001 23.5 2.1 20 229-248 4-23 (75)
170 PF15102 TMEM154: TMEM154 prot 28.2 43 0.00094 27.1 2.0 6 230-235 59-64 (146)
171 TIGR01149 mtrG N5-methyltetrah 27.8 2.2E+02 0.0048 20.0 7.9 11 230-240 49-59 (70)
172 PHA02642 C-type lectin-like pr 27.7 32 0.00069 29.8 1.2 10 228-237 49-58 (216)
173 PF01034 Syndecan: Syndecan do 27.6 21 0.00046 24.7 0.1 12 246-257 31-42 (64)
174 PF05781 MRVI1: MRVI1 protein; 27.5 2.1E+02 0.0045 28.2 6.8 21 228-248 478-498 (538)
175 PHA02690 hypothetical protein; 27.1 2.5E+02 0.0053 20.4 5.8 25 194-218 9-33 (90)
176 PF08372 PRT_C: Plant phosphor 27.1 3.5E+02 0.0076 22.1 7.3 18 159-176 56-73 (156)
177 KOG2927 Membrane component of 26.6 51 0.0011 30.6 2.3 21 228-248 189-209 (372)
178 COG4942 Membrane-bound metallo 26.2 5.8E+02 0.013 24.4 10.1 58 160-217 40-97 (420)
179 PF14715 FixP_N: N-terminal do 26.1 1.5E+02 0.0032 19.5 3.9 19 228-246 22-40 (51)
180 TIGR01478 STEVOR variant surfa 26.1 49 0.0011 29.8 2.1 36 26-61 56-91 (295)
181 PF06738 DUF1212: Protein of u 26.0 1.3E+02 0.0028 24.8 4.7 37 194-230 69-105 (193)
182 PF10498 IFT57: Intra-flagella 26.0 5.4E+02 0.012 24.0 9.8 60 32-103 223-282 (359)
183 PF04906 Tweety: Tweety; Inte 25.6 3.4E+02 0.0073 25.7 7.8 10 172-181 125-134 (406)
184 PF09788 Tmemb_55A: Transmembr 25.5 75 0.0016 28.1 3.1 15 227-241 195-209 (256)
185 PF11337 DUF3139: Protein of u 25.4 63 0.0014 23.3 2.3 17 230-246 9-25 (85)
186 PF01102 Glycophorin_A: Glycop 25.3 64 0.0014 25.3 2.4 13 232-244 67-79 (122)
187 PTZ00370 STEVOR; Provisional 25.1 52 0.0011 29.7 2.1 36 26-61 55-90 (296)
188 PRK15471 chain length determin 24.7 81 0.0017 29.0 3.4 25 227-251 30-54 (325)
189 PF05454 DAG1: Dystroglycan (D 24.7 25 0.00053 31.8 0.0 7 249-255 170-176 (290)
190 smart00397 t_SNARE Helical reg 24.7 2E+02 0.0044 18.5 9.4 54 167-220 7-60 (66)
191 PF05667 DUF812: Protein of un 24.7 7.2E+02 0.016 24.9 20.0 37 163-199 545-581 (594)
192 PF07412 Geminin: Geminin; In 24.1 3.3E+02 0.0072 23.2 6.7 64 137-201 105-168 (200)
193 PRK06654 fliL flagellar basal 24.0 81 0.0018 26.5 3.0 6 247-252 53-58 (181)
194 KOG1029 Endocytic adaptor prot 23.9 8.6E+02 0.019 25.5 10.9 29 31-59 530-558 (1118)
195 PF01519 DUF16: Protein of unk 23.8 3.3E+02 0.0071 20.7 7.8 42 165-206 53-94 (102)
196 PF13260 DUF4051: Protein of u 23.7 1E+02 0.0022 20.1 2.7 12 229-240 5-16 (54)
197 COG4736 CcoQ Cbb3-type cytochr 23.5 1.1E+02 0.0024 20.9 3.0 11 244-254 25-35 (60)
198 PF09371 Tex_N: Tex-like prote 23.4 4.6E+02 0.0099 22.1 8.3 70 131-207 18-87 (193)
199 PF04728 LPP: Lipoprotein leuc 23.3 2.4E+02 0.0053 19.0 6.9 29 192-220 16-44 (56)
200 PF06667 PspB: Phage shock pro 23.1 1.2E+02 0.0027 21.6 3.3 6 252-257 30-35 (75)
201 PF12325 TMF_TATA_bd: TATA ele 22.8 1.3E+02 0.0029 23.4 3.8 30 155-184 86-115 (120)
202 PF05399 EVI2A: Ectropic viral 22.8 81 0.0018 27.2 2.7 13 235-247 132-144 (227)
203 PF11293 DUF3094: Protein of u 22.6 1.6E+02 0.0034 19.8 3.5 19 227-245 29-47 (55)
204 PF11857 DUF3377: Domain of un 22.6 69 0.0015 22.9 1.9 20 233-252 35-54 (74)
205 KOG0972 Huntingtin interacting 22.6 6E+02 0.013 23.2 8.8 11 70-80 333-343 (384)
206 PF12166 DUF3595: Protein of u 22.4 83 0.0018 29.7 3.1 22 229-250 63-84 (422)
207 PF15102 TMEM154: TMEM154 prot 22.1 36 0.00078 27.5 0.5 7 248-254 81-87 (146)
208 PF00435 Spectrin: Spectrin re 21.7 2.8E+02 0.0061 19.1 7.3 27 26-52 74-100 (105)
209 PF00429 TLV_coat: ENV polypro 21.7 2.4E+02 0.0053 27.9 6.2 24 165-188 435-458 (561)
210 COG0840 Tar Methyl-accepting c 21.6 6.2E+02 0.013 23.0 12.6 53 161-213 327-379 (408)
211 PF13779 DUF4175: Domain of un 21.4 9.5E+02 0.021 25.1 11.6 27 172-198 581-607 (820)
212 PRK00846 hypothetical protein; 21.3 3.2E+02 0.0069 19.6 7.8 46 166-211 14-59 (77)
213 TIGR02120 GspF general secreti 21.3 6.6E+02 0.014 23.2 10.6 31 180-210 325-355 (399)
214 PF07798 DUF1640: Protein of u 21.3 4.6E+02 0.01 21.5 15.4 26 199-224 126-151 (177)
215 PF05546 She9_MDM33: She9 / Md 21.2 5.3E+02 0.012 22.1 20.3 26 228-253 152-177 (207)
216 PF02009 Rifin_STEVOR: Rifin/s 21.1 79 0.0017 28.7 2.5 7 105-111 64-70 (299)
217 PF04881 Adeno_GP19K: Adenovir 21.0 91 0.002 24.7 2.5 26 230-255 107-132 (139)
218 PF15145 DUF4577: Domain of un 20.9 1.1E+02 0.0023 23.7 2.8 23 226-248 59-81 (128)
219 PHA02662 ORF131 putative membr 20.8 97 0.0021 26.8 2.9 23 228-250 186-208 (226)
220 PF09788 Tmemb_55A: Transmembr 20.8 1E+02 0.0023 27.3 3.1 37 221-257 192-228 (256)
221 PF07544 Med9: RNA polymerase 20.7 2E+02 0.0044 20.6 4.2 29 160-188 54-82 (83)
222 PF13608 Potyvirid-P3: Protein 20.7 7.6E+02 0.016 23.7 10.1 118 82-204 258-400 (445)
223 PF05802 EspB: Enterobacterial 20.6 6.4E+02 0.014 22.8 9.9 39 167-205 43-85 (317)
224 PF08009 CDP-OH_P_tran_2: CDP- 20.2 82 0.0018 19.6 1.7 16 237-252 9-24 (39)
225 KOG0812 SNARE protein SED5/Syn 20.1 6.6E+02 0.014 22.8 12.4 93 158-250 213-309 (311)
226 PF13807 GNVR: G-rich domain o 20.0 3.2E+02 0.007 19.2 5.2 20 167-186 6-25 (82)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-49 Score=352.71 Aligned_cols=243 Identities=42% Similarity=0.650 Sum_probs=218.2
Q ss_pred HHhHHHHHHHH-----hhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHH
Q 025047 8 EPGMQGAHEES-----KSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATT 82 (258)
Q Consensus 8 ~~~l~~~~~~~-----~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~ 82 (258)
+++|...++++ +.+++|..+++++++|+.+++++.+.++.|+.+|+.+++.+...+..+ +.++..|+|++++
T Consensus 49 i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~ 125 (297)
T KOG0810|consen 49 IEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQT 125 (297)
T ss_pred HHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHH
Confidence 34444444444 445556789999999999999999999999999999999987654333 3356789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHH
Q 025047 83 LGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQE 162 (258)
Q Consensus 83 ~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~ 162 (258)
..++++|.++|.+|+.+|.+|+++|++++.|+|..+.+..++|++++.++++|+++.|++.++. ++++.++++.++++
T Consensus 126 ~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~ 203 (297)
T KOG0810|consen 126 SALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQE 203 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHH
Confidence 9999999999999999999999999999998776665559999999999999999999999887 55677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVA 242 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ 242 (258)
||.+|.+||++|.|||+||.|||+||+.||+|||+||+||.+|.+||++|..++.+|.+||+++|||+||++++++|+++
T Consensus 204 Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~ 283 (297)
T KOG0810|consen 204 RHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIV 283 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCC
Q 025047 243 IIVVAVIKPWSSN 255 (258)
Q Consensus 243 ii~~~i~~~~~~~ 255 (258)
|+++++++||...
T Consensus 284 v~v~~i~~~~~~~ 296 (297)
T KOG0810|consen 284 VLVVVIVVPLVLF 296 (297)
T ss_pred HHhhhhccccccC
Confidence 9999999999654
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-35 Score=248.89 Aligned_cols=235 Identities=24% Similarity=0.442 Sum_probs=198.4
Q ss_pred hhhhHHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHH
Q 025047 4 YLFCEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTL 83 (258)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~ 83 (258)
|.-.+.++..+|..+..-........++..|+..+.++..+.+.++..++..++.... ..-++.|..
T Consensus 37 ~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ih-------------l~~k~aQae 103 (280)
T COG5074 37 YEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIH-------------LANKQAQAE 103 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccc-------------hhhHHHHHH
Confidence 3445666777777777777777888999999999999999999999999998765321 234677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHH-cchhhhhhhHHHHHH
Q 025047 84 GLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQE-QGRGQIMDTLAEIQE 162 (258)
Q Consensus 84 ~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~-~~~~q~~~~l~~i~~ 162 (258)
..+++|.+++++|+.++.+|++.|+++.+|+ |.|+.|++|++|++..+++.++.++|.++++. ..++.++.+|.++++
T Consensus 104 ~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQ-y~Ia~P~ATEdeve~aInd~nG~qvfsqalL~anr~geAktaL~Evq~ 182 (280)
T COG5074 104 NVRQKFLKLIQDYRIIDSNYREEEKEQARRQ-YIIAQPEATEDEVEAAINDVNGQQVFSQALLNANRRGEAKTALAEVQA 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-hhhcCCccchHHHHHHhcccchHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 9999999999999999999999999999765 57789999999999999988888888887764 456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh--HHHHHHHHHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK--WMCIAIIILLII 240 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk--~~~~~~~~~~iv 240 (258)
||.+|++||++|.||.+||+||+.||.+|.+++|.|+.|+..++.+|+.|+.++.+|.+|.+++|| |.||+|++++|+
T Consensus 183 Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 183 RHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999884 566655554444
Q ss_pred HHHHHHHHhccc
Q 025047 241 VAIIVVAVIKPW 252 (258)
Q Consensus 241 ~~ii~~~i~~~~ 252 (258)
+++++++=..|+
T Consensus 263 viv~vv~~v~~~ 274 (280)
T COG5074 263 VIVVVVFKVVPF 274 (280)
T ss_pred HHHHHHhcccch
Confidence 443333223454
No 3
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-30 Score=227.33 Aligned_cols=230 Identities=21% Similarity=0.284 Sum_probs=175.6
Q ss_pred HHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKK 87 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~ 87 (258)
.....++.....+++++.++++++++++.....++++++++...|+.+..... ..+.+..+.+...|.+
T Consensus 34 ~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-----------~~~~~~~k~~~~kL~~ 102 (269)
T KOG0811|consen 34 NQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-----------ESDLRQLKIQLDKLVD 102 (269)
T ss_pred hHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHH
Confidence 44566777888899999999999999999999999999999999999987632 3456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhccCCCCCHHHHHHHHhCCCchHHHHHH--HHHcchhhhhhhHHHHHHHH
Q 025047 88 KFKDKMGEFQVLRENIHQEYREVV-ERRVYTVTGKRADEETIDQLIETGDSEQIFQKA--IQEQGRGQIMDTLAEIQERH 164 (258)
Q Consensus 88 ~f~~~~~~f~~~Q~~~~~~~k~~~-~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~--l~~~~~~q~~~~l~~i~~R~ 164 (258)
.|..++++|+.+|.+..+..+.-+ .|..+ . ++.+ +++-+..-+.+......+.. ...+..+.+...+..+++|.
T Consensus 103 ef~~~l~efq~vQrk~ae~ek~~~~a~~s~-~-s~~~-~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~ 179 (269)
T KOG0811|consen 103 EFSAALKEFQKVQRKSAEREKIPMVARGSQ-N-SQQL-DEESPRVDELSNNGSQSQQQLEEQAQDNEILEYQLDLIEERE 179 (269)
T ss_pred HHHHHHHHHHHHHHHhHHhhcccccccccc-c-chhh-hhhhhhhhhhhccchhhhhHHHHHHhhhhhhhhhHHHHHHHH
Confidence 999999999999998877765111 11000 0 1111 11111111111111111111 11111111223567799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAII 244 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii 244 (258)
..|.+||.+|.|||+||+||+.||++||++||+||+||++|..||+.|+.+|.+|.+|+++++||.|+++++++++++++
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii 259 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGLII 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHhcc
Q 025047 245 VVAVIKP 251 (258)
Q Consensus 245 ~~~i~~~ 251 (258)
++++...
T Consensus 260 ~l~i~~~ 266 (269)
T KOG0811|consen 260 GLIIAGI 266 (269)
T ss_pred HHHHHHh
Confidence 8776543
No 4
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.6e-29 Score=214.96 Aligned_cols=226 Identities=20% Similarity=0.276 Sum_probs=165.5
Q ss_pred HHhHHHHHHHHhhhcChh--hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVTKAP--AMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGL 85 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~--~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L 85 (258)
.+++.+|-.....-.-|. |...=...|+.++..|+.+...|.+.|+.+..... .+...+.-+++|.+..+
T Consensus 74 rrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n--------~~~~~e~~~~~n~~~~l 145 (305)
T KOG0809|consen 74 RRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN--------QLSPSERLLRKNAQGYL 145 (305)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHH
Confidence 344444444444444443 44455789999999999999999999999876531 12234567888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHHHHH
Q 025047 86 KKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHD 165 (258)
Q Consensus 86 ~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ 165 (258)
+.+++.++.+|+..|.+|-...+.+-.+-+ .-++..+..+..++...+....+.+++......+...+.+|.+
T Consensus 146 a~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~-------~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE~ 218 (305)
T KOG0809|consen 146 ALQLQTLSREFRGLQSKYLKRLRNREENSQ-------EYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVREREK 218 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhccc-------chhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999988666554444333210 0011112222222222222222211111223345678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIV 245 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~ 245 (258)
||.++.+||.||++||.||+.||.+||..||+|+|||+++..+|+.|.++|.||..|||+++|++||++++++||+++++
T Consensus 219 EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvl 298 (305)
T KOG0809|consen 219 EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVL 298 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHH
Q 025047 246 VAV 248 (258)
Q Consensus 246 ~~i 248 (258)
+++
T Consensus 299 lil 301 (305)
T KOG0809|consen 299 LIL 301 (305)
T ss_pred HHh
Confidence 743
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.89 E-value=5.2e-21 Score=165.52 Aligned_cols=94 Identities=30% Similarity=0.556 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 025047 159 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILL 238 (258)
Q Consensus 159 ~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~ 238 (258)
-+.+|.++|.+|+++|.||++||.||+++|.+||+.||+||+|++++.+|+..|.++|.+|-.|+|+++||..|++++++
T Consensus 189 l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~ 268 (283)
T COG5325 189 LITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILL 268 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHhcccc
Q 025047 239 IIVAIIVVAVIKPWS 253 (258)
Q Consensus 239 iv~~ii~~~i~~~~~ 253 (258)
||++++.+ +.++++
T Consensus 269 vv~lfv~l-~~kl~~ 282 (283)
T COG5325 269 VVLLFVSL-IKKLRS 282 (283)
T ss_pred HHHHHHHH-HHHhcc
Confidence 88887776 444443
No 6
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.75 E-value=6.7e-17 Score=131.41 Aligned_cols=128 Identities=30% Similarity=0.498 Sum_probs=106.5
Q ss_pred HHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKK 87 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~ 87 (258)
+..|+.++..+...++ .++.++.+|+.+.++++++++.++..|+.|+..+..... .+++++.|++++|+.+|++
T Consensus 22 v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~----~~~s~~~r~~~~q~~~L~~ 95 (151)
T cd00179 22 VEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEA----LNGSSVDRIRKTQHSGLSK 95 (151)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCcHHHHHHHHHHHHHHH
Confidence 3455555555444433 377899999999999999999999999999987653322 2256789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHH
Q 025047 88 KFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQ 142 (258)
Q Consensus 88 ~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q 142 (258)
+|.++|.+|+.+|..|+..||++++|++ .|.+|++||+|+++++++|++..|++
T Consensus 96 ~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~-~i~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 96 KFVEVMTEFNKAQRKYRERYKERIQRQL-EITGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCChHHHHHHHHcCChhhhcC
Confidence 9999999999999999999999998765 56689999999999999998777765
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-13 Score=120.03 Aligned_cols=200 Identities=20% Similarity=0.300 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc---CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 025047 40 EVGKISRFIKSKIEELDRENLTSRQ---KPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRV- 115 (258)
Q Consensus 40 ~i~~~~~~ik~~L~~l~~~~~~~~~---~~~~~~~s~~~rirk~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~- 115 (258)
+|.++..-||..|..|........+ ..+..++....-..++.+..|..++..+...|+.+.+--....+..-.|+.
T Consensus 80 eI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dk 159 (311)
T KOG0812|consen 80 EIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDK 159 (311)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 4555555555555555544322211 111111122245678889999999999999999987655555554333332
Q ss_pred hh-----ccC-CC----CCHHHHHH-------------HHhCCCc--hHHHHHHHHHcchhhhhhhHHHHHHHHHHHHHH
Q 025047 116 YT-----VTG-KR----ADEETIDQ-------------LIETGDS--EQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDL 170 (258)
Q Consensus 116 ~~-----i~~-~~----~t~eeie~-------------~~~~~~~--~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~i 170 (258)
+. +.+ |- +....... -++.|++ .+..|.++.+ ...+++++|.+.+..|
T Consensus 160 fs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll~-------es~~Y~Q~R~~~~q~I 232 (311)
T KOG0812|consen 160 FSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQMALLD-------ESDEYVQERAKTMQNI 232 (311)
T ss_pred hccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 21 111 10 00000111 1111221 1111111221 2367899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 025047 171 ERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 171 e~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~ 246 (258)
|.+|.||-+||.+||+||.+|||++.+||+||+.+..+++.|..+|.|..+.-+++|..++=++.+++|+.+|+++
T Consensus 233 EstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 233 ESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776655555555555554444
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.51 E-value=1.8e-13 Score=95.21 Aligned_cols=63 Identities=41% Similarity=0.646 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025047 162 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 224 (258)
Q Consensus 162 ~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~ 224 (258)
+|+++|..|+.++.+|++||.+|+.+|.+||++||+|++||+.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999999999999999999999999986
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.36 E-value=3.2e-12 Score=87.43 Aligned_cols=59 Identities=44% Similarity=0.653 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 161 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 219 (258)
Q Consensus 161 ~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA 219 (258)
++|++++..|+.++.+|+.||.+|+.+|.+||++||+|++|++.+..++..|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999875
No 10
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.24 E-value=7.6e-11 Score=81.96 Aligned_cols=63 Identities=38% Similarity=0.548 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 157 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 219 (258)
Q Consensus 157 l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA 219 (258)
...+.+|+.+|..|+.++.+++.||.+|+.+|.+|+++||+|++|++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999999999999999999999775
No 11
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.07 E-value=3.2e-09 Score=82.30 Aligned_cols=77 Identities=35% Similarity=0.653 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 27 MKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQE 106 (258)
Q Consensus 27 ~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~~f~~~~~~f~~~Q~~~~~~ 106 (258)
++.++.+|+.+..+++.+++.|+..|+.|+........ .++++.|++++++..|+++|+++|.+|+.+|..|++.
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~-----~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 41 DKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA-----SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-----cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999987643221 1356789999999999999999999999999888776
Q ss_pred HH
Q 025047 107 YR 108 (258)
Q Consensus 107 ~k 108 (258)
||
T Consensus 116 ~k 117 (117)
T smart00503 116 EK 117 (117)
T ss_pred cC
Confidence 63
No 12
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3.7e-07 Score=79.17 Aligned_cols=157 Identities=12% Similarity=0.235 Sum_probs=104.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHh-CCCchHHHHHHHHHcch
Q 025047 72 TGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIE-TGDSEQIFQKAIQEQGR 150 (258)
Q Consensus 72 s~~~rirk~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~-~~~~~~~~q~~l~~~~~ 150 (258)
..+.+-|+..+..+..++.++-..|.. ..+... .-|.. ..+|+..+...+.+-. .|.. ..+..-
T Consensus 76 e~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~~--l~~~~~~~~~~~~~~~~~~~D--~v~~~~----- 140 (235)
T KOG3202|consen 76 EFELSRRRRFIDNLRTQLRQMKSKMAM--SGFANS----NIRDI--LLGPEKSPNLDEAMSRASGLD--NVQEIV----- 140 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc----cchhh--hcCCCCCCchhhhHHHhhccC--cHHHHH-----
Confidence 456789999999999888888777764 112111 11221 2234433321111211 1111 011100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 025047 151 GQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM 230 (258)
Q Consensus 151 ~q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~ 230 (258)
...-.-+++....+..|+.++.-++.|-.-++.-+.+||.+||+.++-++.+...+..+.+.|.+..+ .++.+.+|
T Consensus 141 ---~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~ 216 (235)
T KOG3202|consen 141 ---QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCSQW 216 (235)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccccch
Confidence 00112467778889999999999999999999999999999999999999999999999999999999 55556666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025047 231 CIAIIILLIIVAIIVVA 247 (258)
Q Consensus 231 ~~~~~~~~iv~~ii~~~ 247 (258)
|++++++.+++++++++
T Consensus 217 ~~il~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 217 CAILLLVGLLLLVVIIF 233 (235)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 66555555555555443
No 13
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.1e-05 Score=72.09 Aligned_cols=88 Identities=25% Similarity=0.373 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 025047 156 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAII 235 (258)
Q Consensus 156 ~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~ 235 (258)
.+.....--+++..|++.+.|+..|-.-|+.-|-.|...||.|-+++..|..|+..|+..+.+|.....+.|+|+.++++
T Consensus 223 l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~ll 302 (316)
T KOG3894|consen 223 LLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLL 302 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHH
Confidence 35567777889999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred HHHHHHHH
Q 025047 236 ILLIIVAI 243 (258)
Q Consensus 236 ~~~iv~~i 243 (258)
++-.++++
T Consensus 303 vlsf~lLF 310 (316)
T KOG3894|consen 303 VLSFSLLF 310 (316)
T ss_pred HHHHHHHH
Confidence 55444443
No 14
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.57 E-value=6.9e-07 Score=67.17 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=60.1
Q ss_pred HhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHHH
Q 025047 9 PGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKK 88 (258)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~~ 88 (258)
++|..+|........ ++..++.+|+.++.+|++++..|+..|+.|+....... +..+.+++.|++++++.+|+.+
T Consensus 24 ~~l~~l~~~~l~~~~--~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~---~~~~~~~~~ri~~nq~~~L~~k 98 (103)
T PF00804_consen 24 NELRKLHKKILSSPD--QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSE---GEEPSSNEVRIRKNQVQALSKK 98 (103)
T ss_dssp HHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTT--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccCCCcHHHHHHHHHHHHHHHH
Confidence 334444433333333 34789999999999999999999999999999854211 2345578899999999999999
Q ss_pred HHHHH
Q 025047 89 FKDKM 93 (258)
Q Consensus 89 f~~~~ 93 (258)
|+++|
T Consensus 99 f~~~m 103 (103)
T PF00804_consen 99 FQEVM 103 (103)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 99987
No 15
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.56 E-value=1.9e-06 Score=65.34 Aligned_cols=92 Identities=11% Similarity=0.242 Sum_probs=75.6
Q ss_pred hHHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHH
Q 025047 7 CEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLK 86 (258)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~ 86 (258)
+...+..+...++.++++.|+++++++|+.+...++.+++.+...|+.+.... ......+..+.+...|+
T Consensus 8 in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~----------~~~~~~~~~k~~~~KL~ 77 (102)
T PF14523_consen 8 INQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS----------SDRSNDRQQKLQREKLS 77 (102)
T ss_dssp HHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999998651 11245678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025047 87 KKFKDKMGEFQVLRENIHQEYR 108 (258)
Q Consensus 87 ~~f~~~~~~f~~~Q~~~~~~~k 108 (258)
+.|..++.+|+.+|..|.+..+
T Consensus 78 ~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 78 RDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888766553
No 16
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00035 Score=53.67 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVA 242 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ 242 (258)
-.+.+..|..-+.-|..|--|++.-|..|..++|.+++..+.+......+...+..-.+. ..++.+||.+++.+|+++
T Consensus 34 Nee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~f 111 (118)
T KOG3385|consen 34 NEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAFF 111 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 345588899999999999999999999999999999999999999999999988766655 667888887766665555
Q ss_pred HHH
Q 025047 243 IIV 245 (258)
Q Consensus 243 ii~ 245 (258)
++.
T Consensus 112 i~~ 114 (118)
T KOG3385|consen 112 ILW 114 (118)
T ss_pred Hhh
Confidence 443
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.59 E-value=0.0028 Score=46.81 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 225 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~ 225 (258)
.+.++...+.++.++..+=-.-+.+.|+.++.++...+.-... |..--..|.+-+++
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~---a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDN---AKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 4667777888888877777777788999999998866554333 33333344444444
No 18
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.22 Score=45.06 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHH
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR----KWMCIAIIILLIIV 241 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~r----k~~~~~~~~~~iv~ 241 (258)
+|++=...|.+|-.-..+|+.|..+=..+++.=...|+....+|..|.....+|...-+++. +-.+|.++++++++
T Consensus 200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~i 279 (297)
T KOG0810|consen 200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILI 279 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHH
Confidence 33334444555555555555555555555555555555555555555555555544444432 23444444444433
Q ss_pred HHH
Q 025047 242 AII 244 (258)
Q Consensus 242 ~ii 244 (258)
+++
T Consensus 280 ii~ 282 (297)
T KOG0810|consen 280 III 282 (297)
T ss_pred HHH
Confidence 333
No 19
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.01 E-value=0.022 Score=50.24 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 025047 176 ELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKP 251 (258)
Q Consensus 176 eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~~i~~~ 251 (258)
.|.+--.-++..+.+-...|+..+..++.....+......|.. |.+++.+||.|++++++++++|+.+.+++-
T Consensus 178 ~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~---~~~~~~~~~~~~~i~~v~~~Fi~mvl~iri 250 (251)
T PF09753_consen 178 QLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKE---HSSKSWGCWTWLMIFVVIIVFIMMVLFIRI 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHHHHhee
Confidence 3444445567779999999999999999999999988888755 334444476666666555555555555543
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.032 Score=43.18 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhc
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTA-LQKAKKLQKN 225 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~-L~kA~~~q~~ 225 (258)
..+..++..+.|+.++..+=-.=|-+-|+-+|.+++-.++ .+.|... -..|.+-+++
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~----L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ----LQAGASQFEKTAVKLKRK 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3456666677777788777777788899999988765544 3333333 3345555544
No 21
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.53 Score=40.30 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~ 246 (258)
|+.=.+-+.|=-+|=..+-.=++.|-+.|.+--.-.-.+.+++.++.+-|..-.+.-- +.||.|.++++++++++++++
T Consensus 137 l~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~-~nk~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 137 LKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI-RNKFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555556778998888877777888888887777755443332 246776666665555554444
No 22
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.88 E-value=1.2 Score=39.61 Aligned_cols=89 Identities=16% Similarity=0.293 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 025047 155 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAI 234 (258)
Q Consensus 155 ~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~ 234 (258)
.-..+|..=++.|.++..-..+|..+..+=+.+|..=...|+++..|...|.....+|..+=++ .++.+.++.+++
T Consensus 192 er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrr----t~k~~~~~Llil 267 (283)
T COG5325 192 ERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRR----TKKCRFYLLLIL 267 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhh----hccchhhHHHHH
Confidence 4467899999999999999999999999999999999999999999999999999999987644 456677777777
Q ss_pred HHHHHHHHHHHHH
Q 025047 235 IILLIIVAIIVVA 247 (258)
Q Consensus 235 ~~~~iv~~ii~~~ 247 (258)
+++++++++++.+
T Consensus 268 ~vv~lfv~l~~kl 280 (283)
T COG5325 268 LVVLLFVSLIKKL 280 (283)
T ss_pred HHHHHHHHHHHHh
Confidence 7776666666543
No 23
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=1.5 Score=39.15 Aligned_cols=61 Identities=13% Similarity=0.280 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 225 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~ 225 (258)
..|.+=+..|.+|..=..|++.++.+=|.||..=-.-|+.-.++|+.+..+.+.|.+.=++
T Consensus 173 ~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 173 DLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555555544433
No 24
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.45 E-value=1.6 Score=38.01 Aligned_cols=94 Identities=12% Similarity=0.172 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch----hhHHHHHHH
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNS----RKWMCIAII 235 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~----rk~~~~~~~ 235 (258)
++.--.|++.=.+.|..|-.+..||..|..+=.+++-.=+.||+....++..|..++..+..+--++ |+-..=-+.
T Consensus 173 AktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~ 252 (280)
T COG5074 173 AKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIR 252 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhccee
Confidence 4445577888889999999999999999999999999999999999999999999999998887554 444553344
Q ss_pred HHHHHHHHHHHHHhcccc
Q 025047 236 ILLIIVAIIVVAVIKPWS 253 (258)
Q Consensus 236 ~~~iv~~ii~~~i~~~~~ 253 (258)
|..|.+++|++++.+.|+
T Consensus 253 c~gI~~iii~viv~vv~~ 270 (280)
T COG5074 253 CYGICFIIIIVIVVVVFK 270 (280)
T ss_pred hhhhHHHHHHHHHHHHhc
Confidence 433333333333444443
No 25
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=3.3 Score=37.20 Aligned_cols=197 Identities=15% Similarity=0.267 Sum_probs=115.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 025047 27 MKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENI--- 103 (258)
Q Consensus 27 ~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~~f~~~~~~f~~~Q~~~--- 103 (258)
-+.+..+|..+.....+....++..+.....+-...++ ...+.--.+...++.+|...=..|-+--..-
T Consensus 102 IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~--------n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~ 173 (305)
T KOG0809|consen 102 IEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRK--------NAQGYLALQLQTLSREFRGLQSKYLKRLRNREEN 173 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhc
Confidence 35677777777777777777777777422222111110 1234555667778888887777775421111
Q ss_pred HHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 104 HQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLD 183 (258)
Q Consensus 104 ~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~d 183 (258)
...|...... .+..| .|+++... . .+--|.++.++....+..-..++.+=.+.|.+|..-..+|..|..|
T Consensus 174 ~~~~e~~~~~---~~~~~--dd~d~~~~---~--~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvd 243 (305)
T KOG0809|consen 174 SQEYEDSLDN---TVDLP--DDEDFSDR---T--FQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVD 243 (305)
T ss_pred ccchhhhccc---cccCc--chhhhhhh---h--HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123222211 11112 13322211 1 0111111122222334445667888888999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 025047 184 MAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIV 245 (258)
Q Consensus 184 l~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~ 245 (258)
=+..|.-=.-.|+++...|+.|...+.+|... .+..++..-.++++++|+++++++|+
T Consensus 244 QGtvvDRIDyNvEqt~~~v~~a~keL~KAe~y----Qk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 244 QGTVVDRIDYNVEQTQVRVEDALKELHKAERY----QKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred hccchhheecchhhhhhhHHhHHHHHHHHHHH----HhcCCceEehHHHHHHHHHHHHHHHh
Confidence 99999888888999999999999888888654 55666666555555555444444444
No 26
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.24 Score=44.26 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
=...+.+|-..+..|..|-.||+.-|+.|.+.||+|+++|+.+...|..++..+++
T Consensus 216 iD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 216 IDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 34558888899999999999999999999999999999999999999999887754
No 27
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=94.17 E-value=7.9 Score=39.90 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 222 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~ 222 (258)
+..+.+.+..+.+-+.+++.-+-.+ ....+..-...+..++.......++...|
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3345555555555555555555444 44445555555555555555555444443
No 28
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=92.37 E-value=6.8 Score=33.93 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 40 EVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLR 100 (258)
Q Consensus 40 ~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~~f~~~~~~f~~~Q 100 (258)
++..+-++.+-.++.|..-... .-+|+-....+++.|.++..+|+..-
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~-------------qd~reK~~~~I~ssL~eTtkdf~~~~ 91 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEK-------------QDIREKNLKEIKSSLEETTKDFIDKT 91 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666555555543211 12344455788889999999997643
No 29
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=92.06 E-value=3.6 Score=30.00 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 025047 155 DTLAEIQERHDAVRDLERKLLEL 177 (258)
Q Consensus 155 ~~l~~i~~R~~~i~~ie~~i~eL 177 (258)
..+..+-+|.+.+..|+....+|
T Consensus 21 ~Ni~~ll~Rge~L~~L~~kt~~L 43 (89)
T PF00957_consen 21 ENIDKLLERGEKLEELEDKTEEL 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHH
Confidence 44555556665555555444333
No 30
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=90.93 E-value=0.32 Score=35.34 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=9.2
Q ss_pred HHHHHHHHhccccCCCC
Q 025047 241 VAIIVVAVIKPWSSNKG 257 (258)
Q Consensus 241 ~~ii~~~i~~~~~~~~~ 257 (258)
++||+++++..++|||+
T Consensus 35 VIIiLlImlfqsSS~~~ 51 (85)
T PF10717_consen 35 VIIILLIMLFQSSSNGN 51 (85)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 33344445666766664
No 31
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=87.51 E-value=9.5 Score=28.09 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=15.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 189 DAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 221 (258)
Q Consensus 189 ~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~ 221 (258)
.+|.+.+....+-...-..-+..+.+-+.+-.+
T Consensus 32 ~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r 64 (92)
T PF03908_consen 32 EESSATLRSTNDEYDGQSSLLKKSRKLLKKLER 64 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444444455555555544333
No 32
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=18 Score=28.14 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 025047 202 VSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 202 v~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~~i 248 (258)
.+.+...-+.+...|++--=. ++-|++.|++++++|+++++++++
T Consensus 69 L~~~as~F~~~A~klkrk~wW--kn~Km~~il~~v~~i~l~iiii~~ 113 (116)
T KOG0860|consen 69 LQAGASQFEKTAVKLKRKMWW--KNCKMRIILGLVIIILLVVIIIYI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666543333 345655555555555555555444
No 33
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=80.33 E-value=1.2 Score=32.35 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 025047 207 DHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAI 243 (258)
Q Consensus 207 ~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~i 243 (258)
.+-.....+.+.|+++.+++|+|.++.++++++++++
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~i~ 80 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWSIIAIIIGIVIIIL 80 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhe
Confidence 3334455577889999888888887777776665554
No 34
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=75.71 E-value=7.7 Score=25.48 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=16.3
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 025047 224 KNSRKWMCIAIIILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 224 ~~~rk~~~~~~~~~~iv~~ii~~~i~~~~ 252 (258)
++++.-+..++++++++++.++.+++.|+
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33343444445555555666666777776
No 35
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=74.97 E-value=4.6 Score=39.17 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 025047 198 IESQVSSAVDHVQSGNTALQKAKKLQKNSR 227 (258)
Q Consensus 198 Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~r 227 (258)
|..++.++...++++...|.++.+.=.+..
T Consensus 436 IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~ 465 (490)
T PF00523_consen 436 ISSELGQVNNSLNNAKDLLDKSNQILDSVN 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444444444444333
No 36
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=72.90 E-value=32 Score=25.43 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=36.3
Q ss_pred HHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025047 8 EPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTS 62 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~ 62 (258)
+++++.+........++.. -...+..+..++...+..+...|.+|++.....
T Consensus 14 l~~l~~~~~~~~~~~~~~~---~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~iv 65 (97)
T PF09177_consen 14 LDRLESLYRRWQRLRSDTS---SSEELKWLKRELRNALQSIEWDLEDLEEAVRIV 65 (97)
T ss_dssp HHHHHHHHHHHHHHTTHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCC---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666544 566777788888888888888888888875443
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.58 E-value=61 Score=27.75 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 179 QIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 179 ~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
+.-.+|..-+.+-...+..++..-.........+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555555555433
No 38
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.05 E-value=31 Score=24.11 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 025047 192 GDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIII 236 (258)
Q Consensus 192 ge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~ 236 (258)
.+-++.+|.+-+.....+...+.+|.+-. .+.+|.+-+++-
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~----~n~kW~~r~iiG 59 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIK----SNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44555666665555555555555554433 344666554333
No 39
>PRK14762 membrane protein; Provisional
Probab=71.84 E-value=6.5 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025047 231 CIAIIILLIIVAIIVVAVI 249 (258)
Q Consensus 231 ~~~~~~~~iv~~ii~~~i~ 249 (258)
.|++.+++++.++++..++
T Consensus 5 lw~i~iifligllvvtgvf 23 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445554544444
No 40
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=71.41 E-value=45 Score=29.18 Aligned_cols=82 Identities=15% Similarity=0.266 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-HHHHHH
Q 025047 157 LAEIQERHDAVR-DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK-WMCIAI 234 (258)
Q Consensus 157 l~~i~~R~~~i~-~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk-~~~~~~ 234 (258)
++.+-.+|+.++ +|...|..|..-.++=+... +..|..=..-++.+...++.-...|..+...-+...+ .+.|+.
T Consensus 154 ~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~ 230 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWT 230 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 344455666655 46677766666555555444 4444444556777788888888888888777666654 444444
Q ss_pred HHHHHHH
Q 025047 235 IILLIIV 241 (258)
Q Consensus 235 ~~~~iv~ 241 (258)
+++++++
T Consensus 231 ~~~i~~v 237 (251)
T PF09753_consen 231 WLMIFVV 237 (251)
T ss_pred HHHHHHH
Confidence 4444333
No 41
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=68.20 E-value=9 Score=27.90 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 025047 230 MCIAIIILLIIVAIIVVAVIKP 251 (258)
Q Consensus 230 ~~~~~~~~~iv~~ii~~~i~~~ 251 (258)
+..++++++||+++|+++=.-.
T Consensus 27 lMtILivLVIIiLlImlfqsSS 48 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLFQSSS 48 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 3344444555555555554443
No 42
>PHA02975 hypothetical protein; Provisional
Probab=68.18 E-value=7.6 Score=27.17 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=7.5
Q ss_pred HhhchhhHHHHHHHHHH
Q 025047 222 LQKNSRKWMCIAIIILL 238 (258)
Q Consensus 222 ~q~~~rk~~~~~~~~~~ 238 (258)
+.+++..|++++++++.
T Consensus 37 ~~~~~~~~~~~ii~i~~ 53 (69)
T PHA02975 37 PKKKSSLSIILIIFIIF 53 (69)
T ss_pred CCcCCchHHHHHHHHHH
Confidence 33344555544444333
No 43
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=66.85 E-value=9.8 Score=27.13 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 025047 230 MCIAIIILLIIVAIIV 245 (258)
Q Consensus 230 ~~~~~~~~~iv~~ii~ 245 (258)
+++.++++++++++++
T Consensus 2 ii~~~~~g~~~ll~~v 17 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLV 17 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEehHHHHHHHHHHhh
Confidence 3444444443433333
No 44
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.21 E-value=7.2 Score=30.63 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 025047 229 WMCIAIIILLIIVAIIVVAVIKP 251 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~~i~~~ 251 (258)
++|+++++++|.++++++++++.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555555555543
No 45
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=63.94 E-value=22 Score=29.40 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhchhh-HHHHHHHHHHHHHHHH
Q 025047 213 NTALQKAKKLQKNSRK-WMCIAIIILLIIVAII 244 (258)
Q Consensus 213 ~~~L~kA~~~q~~~rk-~~~~~~~~~~iv~~ii 244 (258)
..++..|...++++.| |.++++++++.+++++
T Consensus 138 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 138 EREEEEAEEEQKKNEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh
Confidence 3455666666666655 5566666665555543
No 46
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=63.49 E-value=25 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHh
Q 025047 210 QSGNTALQKAKKLQ 223 (258)
Q Consensus 210 ~~~~~~L~kA~~~q 223 (258)
+.|..-|..--++|
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 44555666655555
No 47
>PHA02819 hypothetical protein; Provisional
Probab=62.73 E-value=12 Score=26.33 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 025047 228 KWMCIAII 235 (258)
Q Consensus 228 k~~~~~~~ 235 (258)
.|++++++
T Consensus 45 ~~~~~ii~ 52 (71)
T PHA02819 45 LRYYLIIG 52 (71)
T ss_pred hHHHHHHH
Confidence 34443333
No 48
>PHA03054 IMV membrane protein; Provisional
Probab=62.68 E-value=12 Score=26.35 Aligned_cols=8 Identities=38% Similarity=0.912 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 025047 228 KWMCIAII 235 (258)
Q Consensus 228 k~~~~~~~ 235 (258)
.|++++++
T Consensus 47 ~~~~~ii~ 54 (72)
T PHA03054 47 GWYWLIII 54 (72)
T ss_pred hHHHHHHH
Confidence 34443333
No 49
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=62.00 E-value=25 Score=29.01 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhchhh-HHHHHHHHHHHHHHH
Q 025047 213 NTALQKAKKLQKNSRK-WMCIAIIILLIIVAI 243 (258)
Q Consensus 213 ~~~L~kA~~~q~~~rk-~~~~~~~~~~iv~~i 243 (258)
..++..|...++++.| |.++++++++.++++
T Consensus 137 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIl 168 (170)
T TIGR02833 137 ERQLTEAEDEQKKNEKMYRYLGVLVGLMIVLL 168 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3455566666666655 556666666555544
No 50
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.40 E-value=52 Score=22.85 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSG 212 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~ 212 (258)
..|.+||..+.-.-+...+|+..|..|...||..+.-+..-...+...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777888888888888888888888888888888877766666554
No 51
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.04 E-value=40 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 025047 229 WMCIAIIILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~~i~~~~ 252 (258)
||-++.++++|++-+.=+.+++.|
T Consensus 177 ~~Sl~e~~~vv~iSi~Qv~ilk~f 200 (209)
T KOG1693|consen 177 WWSLLEIIAVVVISIAQVFILKFF 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454555555555555556677754
No 52
>PHA02650 hypothetical protein; Provisional
Probab=60.88 E-value=15 Score=26.50 Aligned_cols=8 Identities=0% Similarity=-0.081 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 025047 228 KWMCIAII 235 (258)
Q Consensus 228 k~~~~~~~ 235 (258)
.|++++++
T Consensus 48 ~~~~~ii~ 55 (81)
T PHA02650 48 NGQNFIFL 55 (81)
T ss_pred hHHHHHHH
Confidence 34433333
No 53
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.02 E-value=24 Score=30.07 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQ 223 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q 223 (258)
+-++...+.|+..+..+=-.-|-+.||-| |-=|+.++.-..++...-+.+++..
T Consensus 127 lskvkaqv~evk~vM~eNIekvldRGeki---ELLVdKTenl~~~s~~fr~q~r~~~ 180 (217)
T KOG0859|consen 127 LAKVKAQVTEVKGVMMENIEKVLDRGEKI---ELLVDKTENLRSKSFDFRTQGRKLR 180 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCeE---EeeechhhhhhhhhHHHHHHHHHHH
Confidence 44444556666555544444455555432 2334444444444444333344433
No 54
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=59.87 E-value=1.2e+02 Score=26.45 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH-HHHHHHHHHHHHHHHH
Q 025047 168 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM-CIAIIILLIIVAIIVV 246 (258)
Q Consensus 168 ~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~-~~~~~~~~iv~~ii~~ 246 (258)
.+|.+++..|..-|+..+.-. +..|+.=-.-+..+..-++....-|.-+.+.-.+-.+.+ ..++.+.+||++++.+
T Consensus 154 eeLaesll~LArslKtnalAf---qsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sF 230 (244)
T KOG2678|consen 154 EELAESLLKLARSLKTNALAF---QSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSF 230 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HH
Q 025047 247 AV 248 (258)
Q Consensus 247 ~i 248 (258)
++
T Consensus 231 Vs 232 (244)
T KOG2678|consen 231 VS 232 (244)
T ss_pred HH
No 55
>PRK04325 hypothetical protein; Provisional
Probab=59.61 E-value=60 Score=22.99 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
|.+||..+.-.-+...+|+..|..|...|+.....+..-...+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999999998888777666555543
No 56
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=59.44 E-value=72 Score=23.85 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc-hh-hHHHHHHHHHHHHHH
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK-LQKN-SR-KWMCIAIIILLIIVA 242 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~-~q~~-~r-k~~~~~~~~~~iv~~ 242 (258)
.|..||.+-..+..=+..+-.=++.|...-+..+.+++.-.-. +++.+-.+ ...| -+ -++|++.+++.|+..
T Consensus 12 Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-----Re~dee~k~~n~Knir~~KmwilGlvgTi~gs 86 (98)
T PF11166_consen 12 RIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-----REEDEENKKKNDKNIRDIKMWILGLVGTIFGS 86 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3666666666655555566666677777777777777663222 22222111 1112 22 245666777777766
Q ss_pred HHHHHHhc
Q 025047 243 IIVVAVIK 250 (258)
Q Consensus 243 ii~~~i~~ 250 (258)
+|+. +++
T Consensus 87 liia-~lr 93 (98)
T PF11166_consen 87 LIIA-LLR 93 (98)
T ss_pred HHHH-HHH
Confidence 5543 443
No 57
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=59.42 E-value=35 Score=23.26 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025047 229 WMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~ 246 (258)
..-+++++++++++++.+
T Consensus 37 ~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555544444433
No 58
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=59.08 E-value=0.52 Score=34.26 Aligned_cols=17 Identities=24% Similarity=0.827 Sum_probs=2.9
Q ss_pred hhchhhHHHHHHHHHHH
Q 025047 223 QKNSRKWMCIAIIILLI 239 (258)
Q Consensus 223 q~~~rk~~~~~~~~~~i 239 (258)
.++.|+|+|++|-++||
T Consensus 61 ~rkKrrwlwLlikl~lV 77 (81)
T PF14812_consen 61 PRKKRRWLWLLIKLFLV 77 (81)
T ss_dssp ----------TTTTHCC
T ss_pred ccccchhHHHHHHHHHH
Confidence 44555666554443333
No 59
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=58.31 E-value=12 Score=32.02 Aligned_cols=21 Identities=19% Similarity=0.581 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 025047 227 RKWMCIAIIILLIIVAIIVVA 247 (258)
Q Consensus 227 rk~~~~~~~~~~iv~~ii~~~ 247 (258)
--++|++||.|+++++.+++.
T Consensus 129 amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666653
No 60
>PHA02844 putative transmembrane protein; Provisional
Probab=58.26 E-value=17 Score=25.89 Aligned_cols=9 Identities=0% Similarity=-0.237 Sum_probs=3.8
Q ss_pred hhHHHHHHH
Q 025047 227 RKWMCIAII 235 (258)
Q Consensus 227 rk~~~~~~~ 235 (258)
..|++++++
T Consensus 46 ~~~~~~ii~ 54 (75)
T PHA02844 46 SSTKIWILT 54 (75)
T ss_pred hhHHHHHHH
Confidence 344444433
No 61
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=58.18 E-value=20 Score=25.74 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025047 194 MLDNIESQVSSAVDHVQSGN 213 (258)
Q Consensus 194 ~id~Ie~nv~~a~~~v~~~~ 213 (258)
.++.||.+.......-....
T Consensus 10 ~L~eiEr~L~~~DP~fa~~l 29 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFAARL 29 (82)
T ss_pred HHHHHHHHHHhcCcHHHHHh
Confidence 78888888877555544433
No 62
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=57.70 E-value=24 Score=21.61 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 025047 227 RKWMCIAIIILLIIVAII 244 (258)
Q Consensus 227 rk~~~~~~~~~~iv~~ii 244 (258)
|.|+.+.+..++|+++++
T Consensus 14 r~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 355555544444444443
No 63
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=57.37 E-value=19 Score=26.05 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 025047 37 DVDEVGKISRFIKSKIEELDRE 58 (258)
Q Consensus 37 l~~~i~~~~~~ik~~L~~l~~~ 58 (258)
...++......|+..+..|...
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l 29 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKL 29 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 64
>PHA02692 hypothetical protein; Provisional
Probab=56.87 E-value=17 Score=25.59 Aligned_cols=8 Identities=25% Similarity=0.837 Sum_probs=3.5
Q ss_pred hHHHHHHH
Q 025047 228 KWMCIAII 235 (258)
Q Consensus 228 k~~~~~~~ 235 (258)
.|+.++++
T Consensus 44 ~~~~~ii~ 51 (70)
T PHA02692 44 PWTTVFLI 51 (70)
T ss_pred chHHHHHH
Confidence 44444443
No 65
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=56.30 E-value=77 Score=23.16 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=8.3
Q ss_pred chhhHHHHHHHHHH
Q 025047 225 NSRKWMCIAIIILL 238 (258)
Q Consensus 225 ~~rk~~~~~~~~~~ 238 (258)
+.+||.-+++.+++
T Consensus 70 ~e~P~~svgiAagv 83 (94)
T PF05957_consen 70 RENPWQSVGIAAGV 83 (94)
T ss_pred HHChHHHHHHHHHH
Confidence 34688766655543
No 66
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=55.41 E-value=2.1e+02 Score=27.96 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 159 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 159 ~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
.+..-...+.+|..++.++.+++.+++.-+.+|...++.|..++.....-++.
T Consensus 434 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 434 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888999999999999999999999999999998888776555444
No 67
>PF12669 P12: Virus attachment protein p12 family
Probab=54.93 E-value=12 Score=25.34 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=5.4
Q ss_pred HHHhccccCC
Q 025047 246 VAVIKPWSSN 255 (258)
Q Consensus 246 ~~i~~~~~~~ 255 (258)
..+++.+++|
T Consensus 18 r~~~k~~K~G 27 (58)
T PF12669_consen 18 RKFIKDKKKG 27 (58)
T ss_pred HHHHHHhhcC
Confidence 4455555554
No 68
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=54.87 E-value=11 Score=30.56 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 025047 232 IAIIILLIIVAIIVVAVIK 250 (258)
Q Consensus 232 ~~~~~~~iv~~ii~~~i~~ 250 (258)
|++.|++.+++|++++.+.
T Consensus 34 ILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 69
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=54.81 E-value=64 Score=21.82 Aligned_cols=45 Identities=13% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 210 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 210 (258)
++++++.-+..|-..|.....=-...++.++++|.+++.-..++-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 366788888888889999999999999999999999998666553
No 70
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=54.65 E-value=62 Score=22.13 Aligned_cols=48 Identities=8% Similarity=0.119 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 025047 199 ESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 199 e~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~ 246 (258)
+...+...+.+.+..+-+..|.+--++-.+..+....++++++.++..
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf 51 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGF 51 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888888877766665555555555555544443
No 71
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=53.92 E-value=3.3 Score=33.59 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhchhh
Q 025047 212 GNTALQKAKKLQKNSRK 228 (258)
Q Consensus 212 ~~~~L~kA~~~q~~~rk 228 (258)
|.--|-|=.+.+-++.|
T Consensus 115 GyDsLLKkKEae~kr~K 131 (159)
T PF06789_consen 115 GYDSLLKKKEAELKRSK 131 (159)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 44445444444443333
No 72
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=53.07 E-value=68 Score=21.61 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 221 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~ 221 (258)
|..-...+.+..++=.+...-+..|++.|.++...+..+..++..+..-|.+-.+
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 4444455666666667777778899999999999999999999999988866543
No 73
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=53.06 E-value=14 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 025047 232 IAIIILLIIVAIIVVAVIKPWS 253 (258)
Q Consensus 232 ~~~~~~~iv~~ii~~~i~~~~~ 253 (258)
..++.+++++++++++++.|+-
T Consensus 17 ~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 17 LAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 4466667777777777888874
No 74
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.48 E-value=1.8e+02 Score=27.18 Aligned_cols=72 Identities=13% Similarity=0.263 Sum_probs=38.6
Q ss_pred hhHHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHH
Q 025047 6 FCEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISR---FIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTAT 81 (258)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~---~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q 81 (258)
++..++..+..+|+.+... ..+++++..+....++.+.+ .|...|..++....+ +.+....+++..+|++..
T Consensus 263 ~iN~qle~l~~eYr~~~~~--ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee--rg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDE--LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE--RGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCCHHHHHHHHH
Confidence 3556777777777776654 33444444444444444443 444455555544332 223345556777777554
No 75
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=52.11 E-value=21 Score=26.09 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q 025047 214 TALQKAKKLQ 223 (258)
Q Consensus 214 ~~L~kA~~~q 223 (258)
-+|.+-....
T Consensus 20 DQL~qlVsrN 29 (84)
T PF06143_consen 20 DQLEQLVSRN 29 (84)
T ss_pred HHHHHHHHhC
Confidence 3454444333
No 76
>PTZ00478 Sec superfamily; Provisional
Probab=51.56 E-value=66 Score=23.39 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 025047 196 DNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVA 247 (258)
Q Consensus 196 d~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~~ 247 (258)
|.+++-++...+.+..+.+-+.++.+--++-....+....+++++..+|..+
T Consensus 14 ~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~ 65 (81)
T PTZ00478 14 NPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS 65 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4477778888899999999998888777766666666666666666655543
No 77
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=51.05 E-value=13 Score=36.18 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 025047 89 FKDKMGEF 96 (258)
Q Consensus 89 f~~~~~~f 96 (258)
|.++..-|
T Consensus 187 ltElttvF 194 (490)
T PF00523_consen 187 LTELTTVF 194 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 78
>PRK10404 hypothetical protein; Provisional
Probab=50.78 E-value=1.1e+02 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.9
Q ss_pred HHHHhhchhhHHHHHHHHH
Q 025047 219 AKKLQKNSRKWMCIAIIIL 237 (258)
Q Consensus 219 A~~~q~~~rk~~~~~~~~~ 237 (258)
|..|-+. .||.-+++.++
T Consensus 72 td~yV~e-~Pw~avGiaag 89 (101)
T PRK10404 72 ADDYVHE-KPWQGIGVGAA 89 (101)
T ss_pred HHHHHHh-CcHHHHHHHHH
Confidence 3444432 68887666554
No 79
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=50.41 E-value=66 Score=28.00 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 025047 229 WMCIAIIILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~~i~~~~ 252 (258)
|++.++.+++.++.++.++.+.|.
T Consensus 41 w~va~~~~~~~~~~~~Av~~l~PL 64 (229)
T PRK13865 41 AAVAGIAVAGNVAQAFAIATMVPL 64 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 433333334444444444555554
No 80
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.41 E-value=1.1e+02 Score=26.81 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=12.9
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 025047 187 LVDAQGDMLDNIESQVSSAV 206 (258)
Q Consensus 187 lV~~Qge~id~Ie~nv~~a~ 206 (258)
|+.+|.+.+|.|+..|....
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk 165 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLK 165 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677777777776665443
No 81
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=49.45 E-value=2.2e+02 Score=26.44 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 025047 170 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVD 207 (258)
Q Consensus 170 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~ 207 (258)
+...+......|.++..-...-||.--+++.-...+.+
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~ 148 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLAR 148 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 45555555555655544444445554445544444433
No 82
>PRK00295 hypothetical protein; Provisional
Probab=49.25 E-value=88 Score=21.75 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
|.+||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999999998888777766555544
No 83
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=49.05 E-value=92 Score=21.93 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 025047 230 MCIAIIILLIIVAI 243 (258)
Q Consensus 230 ~~~~~~~~~iv~~i 243 (258)
+.+++++++++.++
T Consensus 49 IlYG~v~Glii~~~ 62 (70)
T PF04210_consen 49 ILYGLVIGLIIFII 62 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 84
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.36 E-value=76 Score=22.04 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 025047 196 DNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVA 247 (258)
Q Consensus 196 d~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~~ 247 (258)
|+++.-++-..+++..+..-+++..+--+|-..+......+++++..++..+
T Consensus 2 ~~~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~ 53 (67)
T KOG3498|consen 2 DQVDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFF 53 (67)
T ss_pred chHHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888887777666655555555555566655555543
No 85
>PRK01844 hypothetical protein; Provisional
Probab=47.99 E-value=29 Score=24.64 Aligned_cols=16 Identities=13% Similarity=0.603 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025047 229 WMCIAIIILLIIVAII 244 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii 244 (258)
|++|+++++.+++.++
T Consensus 4 ~~~I~l~I~~li~G~~ 19 (72)
T PRK01844 4 WLGILVGVVALVAGVA 19 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444443333333
No 86
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.64 E-value=72 Score=27.51 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHh
Q 025047 36 KDVDEVGKISRFIKSKIEELDREN 59 (258)
Q Consensus 36 ~l~~~i~~~~~~ik~~L~~l~~~~ 59 (258)
.+..+|.....++...|.+|+-+.
T Consensus 36 ~~l~~i~~~leEa~ell~qMdlEv 59 (220)
T KOG1666|consen 36 QLLSEIDSKLEEANELLDQMDLEV 59 (220)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555666666666788887664
No 87
>COG4640 Predicted membrane protein [Function unknown]
Probab=47.43 E-value=29 Score=32.65 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHhcccc
Q 025047 211 SGNTALQKAKKLQKNSR---KWMCIAIIILLIIVAIIVVAVIKPWS 253 (258)
Q Consensus 211 ~~~~~L~kA~~~q~~~r---k~~~~~~~~~~iv~~ii~~~i~~~~~ 253 (258)
+|++.+....+-.|++- +.+.|.++++++|++++++.+.+.|.
T Consensus 31 qan~~tn~i~~trrkniskK~ii~was~a~~lIlii~~~~fgk~fs 76 (465)
T COG4640 31 QANKSTNEIIQTRRKNISKKKIIPWASGAFILILIIILFFFGKNFS 76 (465)
T ss_pred hhhHHHHHHHHhhccCCccceeehhHHHHHHHHHHHHHHHHhhccC
Confidence 34444444333334442 33344444444444444444444443
No 88
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=47.03 E-value=75 Score=20.35 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 170 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 222 (258)
Q Consensus 170 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~ 222 (258)
-...+..|.....++..|..+=|.+|..=..-++....+++.+...+..|.+.
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666777766666666666666667777777777666666554
No 89
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.95 E-value=61 Score=29.07 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 177 LQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 217 (258)
Q Consensus 177 L~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~ 217 (258)
-...-.--..++.+||+.|++||.|++........|.+.|.
T Consensus 91 ~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~ 131 (273)
T KOG3065|consen 91 SREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLT 131 (273)
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHH
Confidence 33344455677889999999999999998888888877773
No 90
>PRK10132 hypothetical protein; Provisional
Probab=46.71 E-value=1.3e+02 Score=23.00 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHH
Q 025047 227 RKWMCIAIIILL 238 (258)
Q Consensus 227 rk~~~~~~~~~~ 238 (258)
+||.-++|.+++
T Consensus 85 ~Pw~svgiaagv 96 (108)
T PRK10132 85 RPWCSVGTAAAV 96 (108)
T ss_pred CcHHHHHHHHHH
Confidence 588877765543
No 91
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=46.67 E-value=25 Score=28.84 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=9.0
Q ss_pred HHHHHHHHhhchhhHHHH
Q 025047 215 ALQKAKKLQKNSRKWMCI 232 (258)
Q Consensus 215 ~L~kA~~~q~~~rk~~~~ 232 (258)
+-....+.||..+|++-+
T Consensus 17 ~y~as~~r~k~~~R~i~l 34 (161)
T PHA02673 17 NYVASVKRQKAIRRYIKL 34 (161)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 333445556555665433
No 92
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=46.45 E-value=29 Score=25.51 Aligned_cols=17 Identities=6% Similarity=0.349 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhccccC
Q 025047 238 LIIVAIIVVAVIKPWSS 254 (258)
Q Consensus 238 ~iv~~ii~~~i~~~~~~ 254 (258)
+++++.+++.++....+
T Consensus 10 i~~a~~LI~~VLlQ~~k 26 (86)
T COG1314 10 IVVALALIILVLLQRGK 26 (86)
T ss_pred HHHHHHHHHheeeecCC
Confidence 33333344444444433
No 93
>PRK09793 methyl-accepting protein IV; Provisional
Probab=46.09 E-value=2.9e+02 Score=26.80 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 213 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 213 (258)
+..-...+.+|...+.++.+.+.+++..+.+|...++.|..++.....-++...
T Consensus 431 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 484 (533)
T PRK09793 431 VNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNA 484 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677888999999999999999999999999999888877655554443
No 94
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=45.50 E-value=74 Score=26.10 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhchhh-HHHHHHHHHHHHHHH
Q 025047 213 NTALQKAKKLQKNSRK-WMCIAIIILLIIVAI 243 (258)
Q Consensus 213 ~~~L~kA~~~q~~~rk-~~~~~~~~~~iv~~i 243 (258)
..++..|++-.+++.| |.+.++++++.++++
T Consensus 137 ~~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIl 168 (170)
T PF09548_consen 137 EQQLEEAREEAKKKGKLYRSLGVLGGLFLVIL 168 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3445555555555544 455555555544443
No 95
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=45.20 E-value=52 Score=21.12 Aligned_cols=11 Identities=45% Similarity=1.078 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 025047 230 MCIAIIILLII 240 (258)
Q Consensus 230 ~~~~~~~~~iv 240 (258)
+|++++|++++
T Consensus 35 f~lilicllli 45 (52)
T TIGR01294 35 FCLILICLLLI 45 (52)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 96
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=44.70 E-value=30 Score=27.60 Aligned_cols=33 Identities=30% Similarity=0.687 Sum_probs=25.4
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 025047 219 AKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKP 251 (258)
Q Consensus 219 A~~~q~~~rk~~~~~~~~~~iv~~ii~~~i~~~ 251 (258)
..+|++..++|..+..+..++.++++.+-++||
T Consensus 118 ~~~y~~~~~~~~~~g~~~~~~~~~i~~LMV~KP 150 (150)
T PF10027_consen 118 PPEYKRLFRRWFILGWIAFLLLVVIVVLMVFKP 150 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 346777778888888887777777777778887
No 97
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=44.28 E-value=45 Score=21.38 Aligned_cols=12 Identities=42% Similarity=0.988 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 025047 230 MCIAIIILLIIV 241 (258)
Q Consensus 230 ~~~~~~~~~iv~ 241 (258)
+|++++|++++.
T Consensus 35 fclilicllli~ 46 (52)
T PF04272_consen 35 FCLILICLLLIC 46 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 98
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=43.98 E-value=33 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=9.0
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 025047 225 NSRKWMCIAIIILLIIVAII 244 (258)
Q Consensus 225 ~~rk~~~~~~~~~~iv~~ii 244 (258)
+..|+.+++++++.++++.+
T Consensus 10 ~~~kkFl~~l~~vfiia~~V 29 (85)
T PF10749_consen 10 KEGKKFLLALAIVFIIAATV 29 (85)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 99
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.90 E-value=2.9e+02 Score=26.16 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 025047 82 TLGLKKKFKDKMG 94 (258)
Q Consensus 82 ~~~L~~~f~~~~~ 94 (258)
++++...+.++..
T Consensus 262 l~aileeL~eIk~ 274 (455)
T KOG3850|consen 262 LDAILEELREIKE 274 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 100
>PHA02844 putative transmembrane protein; Provisional
Probab=43.80 E-value=27 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=18.5
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHH
Q 025047 222 LQKNSRKWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 222 ~q~~~rk~~~~~~~~~~iv~~ii~~~i 248 (258)
+.+++.++.-+.+++++++++++++.+
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~~~ 64 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFATFL 64 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHH
Confidence 455566788888888777666665544
No 101
>PRK02793 phi X174 lysis protein; Provisional
Probab=43.70 E-value=1.1e+02 Score=21.44 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
..|.+||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34777788888888888888888888888888887777665554433
No 102
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=43.47 E-value=3.2e+02 Score=26.52 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
+..=.+.+.+|...+.++.+.+.+++..+.+|...++.|..+++.....++.
T Consensus 433 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~ 484 (553)
T PRK15048 433 VESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQ 484 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455778889999999999999999999999999998888776666553
No 103
>PRK06870 secG preprotein translocase subunit SecG; Reviewed
Probab=43.31 E-value=34 Score=24.25 Aligned_cols=12 Identities=17% Similarity=0.575 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhc
Q 025047 239 IIVAIIVVAVIK 250 (258)
Q Consensus 239 iv~~ii~~~i~~ 250 (258)
++.+++++.++.
T Consensus 11 i~~i~LI~~vLl 22 (76)
T PRK06870 11 IVALLLIILVLL 22 (76)
T ss_pred HHHHHHHHHhee
Confidence 333333333444
No 104
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=43.08 E-value=1.1e+02 Score=21.23 Aligned_cols=30 Identities=10% Similarity=0.105 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 025047 197 NIESQVSSAVDHVQSGNTALQKAKKLQKNS 226 (258)
Q Consensus 197 ~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~ 226 (258)
.+++-.+...++..+..+-|..|++--+.=
T Consensus 3 ~~~~~~e~~~~~lke~~rvl~~arKP~~eE 32 (65)
T COG2443 3 QMMDKPEELREFLKEYRRVLKVARKPDWEE 32 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 345566777788888888888887665543
No 105
>PHA02819 hypothetical protein; Provisional
Probab=42.91 E-value=44 Score=23.57 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=20.6
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 025047 220 KKLQKNSRKWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 220 ~~~q~~~rk~~~~~~~~~~iv~~ii~~~i 248 (258)
..+.++++++.-+.+++++++++++++.+
T Consensus 34 ~s~~~~~~~~~~~~~~ii~l~~~~~~~~~ 62 (71)
T PHA02819 34 ENYNKKTKKSFLRYYLIIGLVTIVFVIIF 62 (71)
T ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHH
Confidence 34566667888888888887777666544
No 106
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=42.78 E-value=23 Score=32.00 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhccccCCCC
Q 025047 239 IIVAIIVVAVIKPWSSNKG 257 (258)
Q Consensus 239 iv~~ii~~~i~~~~~~~~~ 257 (258)
+|+++++.+++..++++.|
T Consensus 284 lvlivLiaYli~Rrr~~~g 302 (306)
T PF01299_consen 284 LVLIVLIAYLIGRRRSRAG 302 (306)
T ss_pred HHHHHHHhheeEecccccc
Confidence 3333344445555666655
No 107
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=42.47 E-value=1.9e+02 Score=23.64 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=50.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 152 QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDM-LDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 152 q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~-id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
++....++++.=.+.|+.|......+.+=|+-+.....++.+. ++.++.+|..-..-++.+.+.+.-
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 3345566666667777777777778888888888888888887 999999999888877777666543
No 108
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=42.12 E-value=42 Score=22.08 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhcc
Q 025047 239 IIVAIIVVAVIKP 251 (258)
Q Consensus 239 iv~~ii~~~i~~~ 251 (258)
+++++.+.-++|.
T Consensus 14 ~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 14 GLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHhhc
Confidence 3333333334443
No 109
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=41.95 E-value=91 Score=21.36 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 025047 203 SSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 203 ~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~ 246 (258)
+...+.+.+..+-+..|.+--++-....+....++++++.++..
T Consensus 4 e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf 47 (61)
T TIGR00327 4 EAPVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGY 47 (61)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888877776665555555555555444443
No 110
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=41.89 E-value=26 Score=28.18 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccc
Q 025047 227 RKWMCIAIIILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 227 rk~~~~~~~~~~iv~~ii~~~i~~~~ 252 (258)
+.+.++--+..+++++|++++++|||
T Consensus 122 ~~~r~~nei~~ll~i~Iv~lvv~KPF 147 (147)
T PF03653_consen 122 KFFRIFNEIPTLLLIAIVILVVVKPF 147 (147)
T ss_pred HHHHHHhHHHHHHHHHHHHHheeCCC
Confidence 33444544555556666777789997
No 111
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=41.52 E-value=66 Score=20.66 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 025047 169 DLERKLLELQQIFLDMAVLVDAQGDMLD 196 (258)
Q Consensus 169 ~ie~~i~eL~~lf~dl~~lV~~Qge~id 196 (258)
.|-..+.++++++.+|-.++.+|-.-+-
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~ 32 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETR 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999888888755443
No 112
>PHA02650 hypothetical protein; Provisional
Probab=40.81 E-value=31 Score=24.89 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=16.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 025047 225 NSRKWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 225 ~~rk~~~~~~~~~~iv~~ii~~~i 248 (258)
+..+|+-+.+++++++++++++.+
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~ 65 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALF 65 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHH
Confidence 456788888888887776665443
No 113
>PRK00736 hypothetical protein; Provisional
Probab=40.32 E-value=1.2e+02 Score=20.97 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
|..||..+.-.-+...+|+..|..|...||....-+..-.+.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888888888777666555533
No 114
>PRK00523 hypothetical protein; Provisional
Probab=40.21 E-value=45 Score=23.69 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025047 232 IAIIILLIIVAIIVVAVI 249 (258)
Q Consensus 232 ~~~~~~~iv~~ii~~~i~ 249 (258)
.+++|+++|+++++.+++
T Consensus 4 ~~l~I~l~i~~li~G~~~ 21 (72)
T PRK00523 4 IGLALGLGIPLLIVGGII 21 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555444444444443
No 115
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=40.15 E-value=46 Score=22.67 Aligned_cols=8 Identities=50% Similarity=0.596 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 025047 216 LQKAKKLQ 223 (258)
Q Consensus 216 L~kA~~~q 223 (258)
|.+-++.+
T Consensus 33 l~ker~R~ 40 (64)
T COG4068 33 LNKERKRQ 40 (64)
T ss_pred HHHHHHHH
Confidence 44433333
No 116
>TIGR00810 secG protein translocase, SecG subunit. This family of proteins forms a complex with SecY and SecE. SecA then recruits the SecYEG complex to form an active protein translocation channel.
Probab=40.00 E-value=39 Score=23.72 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.0
Q ss_pred HHHHHHhc
Q 025047 243 IIVVAVIK 250 (258)
Q Consensus 243 ii~~~i~~ 250 (258)
++++.++.
T Consensus 14 ~LI~~vLl 21 (73)
T TIGR00810 14 LLIGLVLL 21 (73)
T ss_pred HHHHHhee
Confidence 33333444
No 117
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=39.64 E-value=1.1e+02 Score=26.00 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 025047 163 RHDAVRDLERKLLEL 177 (258)
Q Consensus 163 R~~~i~~ie~~i~eL 177 (258)
-.+++.+++..|..+
T Consensus 106 W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 106 WEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHH
Confidence 455555555544443
No 118
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=39.38 E-value=18 Score=29.39 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 025047 216 LQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 216 L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~~i 248 (258)
=+.|...+.|..|..+++++++|.+++||+++|
T Consensus 122 kKEae~kr~K~Cki~~Li~~~vc~~ilVivVpi 154 (159)
T PF06789_consen 122 KKEAELKRSKVCKIFALIVLAVCAVILVIVVPI 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheEEEEEEE
Confidence 345666677888887777777766666666554
No 119
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=39.35 E-value=47 Score=26.83 Aligned_cols=19 Identities=5% Similarity=-0.265 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 025047 227 RKWMCIAIIILLIIVAIIV 245 (258)
Q Consensus 227 rk~~~~~~~~~~iv~~ii~ 245 (258)
..|.++++++++|+++.++
T Consensus 117 ~~~~i~~~i~g~ll~i~~g 135 (145)
T PF10661_consen 117 ISPTILLSIGGILLAICGG 135 (145)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 120
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=39.21 E-value=34 Score=24.29 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=12.1
Q ss_pred hchhhHHHHHHHHHHHHHHHHHH
Q 025047 224 KNSRKWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 224 ~~~rk~~~~~~~~~~iv~~ii~~ 246 (258)
++..+|+-+.++++.++++++++
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~ii~ 62 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLIIV 62 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHHHH
Confidence 33445555666665555554444
No 121
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=38.98 E-value=43 Score=21.45 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC
Q 025047 231 CIAIIILLIIVAIIVVAVIKPWSS 254 (258)
Q Consensus 231 ~~~~~~~~iv~~ii~~~i~~~~~~ 254 (258)
.+++++.++++++.+.+.+..-++
T Consensus 4 ~~lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 4 YILIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555555555555544443343
No 122
>PRK04406 hypothetical protein; Provisional
Probab=38.70 E-value=1.4e+02 Score=21.17 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 210 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 210 (258)
..|..||..+.-.-+...+|+..|..|...||.....+..-...+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477778888888888888888888888888888777766555443
No 123
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=38.44 E-value=37 Score=22.44 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 025047 228 KWMCIAIIILLIIVAIIVVA 247 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~ 247 (258)
+||++++++++++-..+.+-
T Consensus 2 PwWvY~vi~gI~~S~ym~v~ 21 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVK 21 (52)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 68888877777776666543
No 124
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.31 E-value=2.6e+02 Score=24.10 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=17.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025047 32 KRMEKDVDEVGKISRFIKSKIEELDREN 59 (258)
Q Consensus 32 ~~i~~l~~~i~~~~~~ik~~L~~l~~~~ 59 (258)
.++.....++.+.+.++...+..++...
T Consensus 29 ~e~~~v~~~i~~sI~~~~s~~~rl~~~~ 56 (213)
T KOG3251|consen 29 QEVSAVENSIQRSIDQYASRCQRLDVLV 56 (213)
T ss_pred cchHHHHHHHHHhHHHHHHHHHHHHhHh
Confidence 3455555666666666666666666553
No 125
>PRK13673 hypothetical protein; Provisional
Probab=37.26 E-value=80 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 025047 211 SGNTALQKAKKLQKNSRKWMCIAIIILLI 239 (258)
Q Consensus 211 ~~~~~L~kA~~~q~~~rk~~~~~~~~~~i 239 (258)
=|.-|+.-+++.+.+.....++.+++++|
T Consensus 74 Ig~mEm~l~r~kk~k~~~~~~~~~ii~lv 102 (118)
T PRK13673 74 IGLMEMSLAKRKKGKPTGGFWWIFIIVLV 102 (118)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 35666666766666555444444444433
No 126
>PRK02119 hypothetical protein; Provisional
Probab=36.92 E-value=1.5e+02 Score=20.90 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
..|.+||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888888888999998888888777766555433
No 127
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=36.54 E-value=1.2e+02 Score=26.17 Aligned_cols=7 Identities=0% Similarity=-0.177 Sum_probs=3.0
Q ss_pred HHHhccc
Q 025047 246 VAVIKPW 252 (258)
Q Consensus 246 ~~i~~~~ 252 (258)
++.+.|.
T Consensus 59 v~~l~pl 65 (228)
T PRK13872 59 LVWQSAR 65 (228)
T ss_pred HHHhhcc
Confidence 3344443
No 128
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=36.45 E-value=1.9e+02 Score=22.01 Aligned_cols=10 Identities=10% Similarity=0.534 Sum_probs=5.7
Q ss_pred hhHHHHHHHH
Q 025047 227 RKWMCIAIII 236 (258)
Q Consensus 227 rk~~~~~~~~ 236 (258)
++|.-+++..
T Consensus 82 ~PWq~VGvaA 91 (104)
T COG4575 82 NPWQGVGVAA 91 (104)
T ss_pred CCchHHHHHH
Confidence 4676555544
No 129
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=36.24 E-value=1.1e+02 Score=26.68 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=10.7
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHhccc
Q 025047 227 RKWMCIAII-ILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 227 rk~~~~~~~-~~~iv~~ii~~~i~~~~ 252 (258)
+.|++++++ +++.++.++.++.+.|.
T Consensus 53 ~~w~v~a~~~~~ia~~~v~av~~l~pl 79 (250)
T PRK13887 53 QTWQVVGILSLLIALAAVGGVIHIGSQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346553443 23333333434444454
No 130
>PHA02513 V1 structural protein V1; Reviewed
Probab=36.14 E-value=71 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 025047 230 MCIAIIILLIIVAIIVVAVIKP 251 (258)
Q Consensus 230 ~~~~~~~~~iv~~ii~~~i~~~ 251 (258)
..+++++++|++.+++++.+..
T Consensus 68 k~ii~L~IFIliGivl~~pI~s 89 (135)
T PHA02513 68 GVLLGLFIFILIGIVLLPVITS 89 (135)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 3444454455555555544433
No 131
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=35.49 E-value=59 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 025047 229 WMCIAIIILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~~i~~~~ 252 (258)
.+-+++.++.|+=+|+|++++.|-
T Consensus 21 llRYGLf~GAIFQliCilAiI~~~ 44 (85)
T PF06783_consen 21 LLRYGLFVGAIFQLICILAIILPI 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHheeeec
Confidence 345778888888888888888774
No 132
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=35.41 E-value=56 Score=21.56 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC
Q 025047 231 CIAIIILLIIVAIIVVAVIKPWSS 254 (258)
Q Consensus 231 ~~~~~~~~iv~~ii~~~i~~~~~~ 254 (258)
.+++++.++++++.+++.+..-++
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555555555555444433333
No 133
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=35.29 E-value=1.5e+02 Score=24.21 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=13.1
Q ss_pred HHHHhhchhhHHHHHHHHHHHHH
Q 025047 219 AKKLQKNSRKWMCIAIIILLIIV 241 (258)
Q Consensus 219 A~~~q~~~rk~~~~~~~~~~iv~ 241 (258)
+.++.|=.|..-+++.++++|++
T Consensus 147 ~~~~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 147 AKKKGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHhcccHHHHHHHHHHHHHHHHh
Confidence 44556667776555555555543
No 134
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=35.24 E-value=17 Score=35.88 Aligned_cols=31 Identities=6% Similarity=0.310 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025047 29 AIKKRMEKDVDEVGKISRFIKSKIEELDREN 59 (258)
Q Consensus 29 ~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~ 59 (258)
.|-.+|...-.-|...+..|-.+|+.++.+.
T Consensus 291 ~L~~qL~nnF~AISssI~dIy~RLd~leAda 321 (610)
T PF01601_consen 291 QLTSQLSNNFGAISSSIQDIYNRLDQLEADA 321 (610)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 3444444444456666666677777776653
No 135
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=35.05 E-value=2.3e+02 Score=26.39 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHH
Q 025047 27 MKAIKKRMEKDVDEVGKISRF 47 (258)
Q Consensus 27 ~~~l~~~i~~l~~~i~~~~~~ 47 (258)
+|++++=+++.-.++.+...+
T Consensus 57 DPeMK~Vm~nF~rqTsQRF~E 77 (353)
T TIGR01477 57 DPEMKSVMEQFDRQTSQRFEE 77 (353)
T ss_pred cHHHHHHHHHHhHHHHHHHHh
Confidence 444444444444444443333
No 136
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=34.78 E-value=1.7e+02 Score=20.99 Aligned_cols=12 Identities=42% Similarity=0.518 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 025047 194 MLDNIESQVSSA 205 (258)
Q Consensus 194 ~id~Ie~nv~~a 205 (258)
-+|.||.-|+.+
T Consensus 23 rLD~iEeKVEft 34 (77)
T PRK01026 23 RLDEIEEKVEFT 34 (77)
T ss_pred HHHHHHHHHHHH
Confidence 345555555443
No 137
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.72 E-value=2.4e+02 Score=24.29 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 025047 40 EVGKISRFIKSKIEELDRENLTS 62 (258)
Q Consensus 40 ~i~~~~~~ik~~L~~l~~~~~~~ 62 (258)
++...+..+...|.+....+...
T Consensus 30 e~~~v~~~i~~sI~~~~s~~~rl 52 (213)
T KOG3251|consen 30 EVSAVENSIQRSIDQYASRCQRL 52 (213)
T ss_pred chHHHHHHHHHhHHHHHHHHHHH
Confidence 67777777788887777766544
No 138
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=34.70 E-value=1.2e+02 Score=19.00 Aligned_cols=27 Identities=4% Similarity=0.166 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccC
Q 025047 228 KWMCIAIIILLIIVAIIVVAVIKPWSS 254 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i~~~~~~ 254 (258)
+.|.+..+..+.++.++.+++..++.+
T Consensus 9 PLWlVgtv~G~~vi~lvglFfYGsYsG 35 (40)
T PF01788_consen 9 PLWLVGTVAGIAVIGLVGLFFYGSYSG 35 (40)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred cchHHHHHHHHHHHHHHHHheecccCC
Confidence 667777777777777777777777654
No 139
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=34.50 E-value=37 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Q 025047 228 KWMCIAIIILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i~~~~ 252 (258)
.+.+.--+..++++++++++++|||
T Consensus 117 ~~r~~ne~p~llli~iV~lvV~KPf 141 (142)
T TIGR00701 117 FYRIVNEAPTILMVIIVILVVVKPF 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCC
Confidence 3445555556666666777789997
No 140
>PHA03054 IMV membrane protein; Provisional
Probab=34.36 E-value=46 Score=23.47 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 025047 225 NSRKWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 225 ~~rk~~~~~~~~~~iv~~ii~~~i 248 (258)
++++++-+.+++++++++++++.+
T Consensus 41 ~~~~~~~~~~~ii~l~~v~~~~l~ 64 (72)
T PHA03054 41 NNTGCWGWYWLIIIFFIVLILLLL 64 (72)
T ss_pred cccCCchHHHHHHHHHHHHHHHHH
Confidence 456678888888887766666544
No 141
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=34.28 E-value=2.6e+02 Score=22.84 Aligned_cols=60 Identities=7% Similarity=0.258 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 159 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 159 ~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
.+.+-...+..+...+.++...+.+++.-+.+|...+..|...+......++.....+..
T Consensus 129 ~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~ 188 (213)
T PF00015_consen 129 SVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEE 188 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888888888888888888888888888887776666555555444433
No 142
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=34.11 E-value=2e+02 Score=22.34 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 177 LQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 221 (258)
Q Consensus 177 L~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~ 221 (258)
|.++|..|..|++.=..-.+.+|..--.|-..+..|..+|++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 556677777776655555567888888888888888888877544
No 143
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=33.82 E-value=90 Score=22.39 Aligned_cols=26 Identities=12% Similarity=0.392 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccc
Q 025047 228 KWMCIAIIILLIIVAIIVVAVIKPWS 253 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i~~~~~ 253 (258)
|..|=++.++++++.++++|+...|-
T Consensus 46 R~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 46 RFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 34555566666666667777766553
No 144
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=33.76 E-value=81 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhccCCCCCHHHHHHHHhC
Q 025047 106 EYREVVERRVYTVTGKRADEETIDQLIET 134 (258)
Q Consensus 106 ~~k~~~~rr~~~i~~~~~t~eeie~~~~~ 134 (258)
+||+++..+.. -.-|++++.++.+|++.
T Consensus 13 EyKKrL~e~l~-~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 13 EYKKRLAERLR-AKLPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHH-HH-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHCCCCCHHHHHHHHHH
Confidence 45555543221 12389999999999874
No 145
>PTZ00046 rifin; Provisional
Probab=33.09 E-value=4e+02 Score=24.92 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025047 26 AMKAIKKRMEKDVDEVGKISRFIKSKIEE 54 (258)
Q Consensus 26 ~~~~l~~~i~~l~~~i~~~~~~ik~~L~~ 54 (258)
++|++++=+++-..++.+...+=-.+++.
T Consensus 53 NDPeMK~Vme~F~rqTsQRF~EYdERM~~ 81 (358)
T PTZ00046 53 NDPEMKSVMENFDRQTSQRFEEYDERMKE 81 (358)
T ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444
No 146
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=33.05 E-value=53 Score=28.65 Aligned_cols=7 Identities=29% Similarity=0.994 Sum_probs=4.8
Q ss_pred cccCCCC
Q 025047 251 PWSSNKG 257 (258)
Q Consensus 251 ~~~~~~~ 257 (258)
-|+..||
T Consensus 214 C~k~dPg 220 (259)
T PF07010_consen 214 CWKTDPG 220 (259)
T ss_pred hhcCCCC
Confidence 3777776
No 147
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=32.48 E-value=75 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.682 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025047 229 WMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~ 246 (258)
|+++++++++||.-+.+|
T Consensus 6 wlIIviVlgvIigNia~L 23 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAAL 23 (55)
T ss_pred hHHHHHHHHHHHhHHHHH
Confidence 444444444444444444
No 148
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.26 E-value=72 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.837 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025047 229 WMCIAIIILLIIVAIIV 245 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~ 245 (258)
|++++++++++++.+++
T Consensus 4 ~lail~ivl~ll~G~~~ 20 (71)
T COG3763 4 WLAILLIVLALLAGLIG 20 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 149
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=32.22 E-value=74 Score=25.77 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc
Q 025047 225 NSRKWMCIAIIILLIIVAIIVVAVIK 250 (258)
Q Consensus 225 ~~rk~~~~~~~~~~iv~~ii~~~i~~ 250 (258)
+.|-+.|++.+++.|+++++.++..+
T Consensus 90 k~RIkv~~~Mi~lTiiGc~~mv~sGK 115 (146)
T PF06388_consen 90 KARIKVCYIMIALTIIGCIAMVISGK 115 (146)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667888888888888888765554
No 150
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=32.11 E-value=4.1e+02 Score=24.56 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 170 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 170 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
+...+......|.++..-+..-||.--+++.......++.+.
T Consensus 113 ls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 113 LADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEE 154 (399)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 445555545566666555545555555555555555555443
No 151
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=32.07 E-value=3.3e+02 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 025047 203 SSAVDHVQSGNTALQKAKKLQKN 225 (258)
Q Consensus 203 ~~a~~~v~~~~~~L~kA~~~q~~ 225 (258)
.+..++-++-.+..++|.+-+|.
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555566666655
No 152
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=31.50 E-value=84 Score=24.11 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 025047 211 SGNTALQKAKKLQKNSRKWMCIAIIILLII 240 (258)
Q Consensus 211 ~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv 240 (258)
=|.-|+.-|++.+.+..+..++.+++++++
T Consensus 76 I~lmEm~l~rkkk~k~~~~~~~~~ii~~vl 105 (110)
T PF07457_consen 76 IGLMEMALARKKKGKPTKILWWLFIILLVL 105 (110)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 356677777777776665555544444433
No 153
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=31.30 E-value=2.2e+02 Score=21.05 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 155 DTLAEIQERHDAVRD-LERKLLELQQIFLDMAVLVDAQ-GDMLDNIESQVSSAVDHVQSGNTALQKAK 220 (258)
Q Consensus 155 ~~l~~i~~R~~~i~~-ie~~i~eL~~lf~dl~~lV~~Q-ge~id~Ie~nv~~a~~~v~~~~~~L~kA~ 220 (258)
.....+......+.. .+..-.++..-|..|...+.+. ..+++.|+..-......+..-...+....
T Consensus 21 ~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l 88 (127)
T smart00502 21 DALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQ 88 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555443 4455667778888888888755 45788888776666555555555554443
No 154
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=31.26 E-value=6.4e+02 Score=26.50 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 025047 177 LQQIFLDMAVLVDAQGDMLDNI 198 (258)
Q Consensus 177 L~~lf~dl~~lV~~Qge~id~I 198 (258)
..+...+|+.++.+|....|.-
T Consensus 621 ~~q~m~~L~e~lr~QQ~L~D~t 642 (851)
T TIGR02302 621 MEQQMNKLGELMRKQQQLRDET 642 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777654
No 155
>PRK05529 cell division protein FtsQ; Provisional
Probab=30.87 E-value=49 Score=29.11 Aligned_cols=7 Identities=0% Similarity=-0.036 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 025047 218 KAKKLQK 224 (258)
Q Consensus 218 kA~~~q~ 224 (258)
+..+..+
T Consensus 26 ~~~~~~~ 32 (255)
T PRK05529 26 RFTTRIR 32 (255)
T ss_pred chhhhcc
Confidence 3333333
No 156
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=30.79 E-value=1.1e+02 Score=22.96 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhch
Q 025047 211 SGNTALQKAKKLQKNS 226 (258)
Q Consensus 211 ~~~~~L~kA~~~q~~~ 226 (258)
.|..-|..+..|..+.
T Consensus 32 ~G~~YL~~~y~y~~sh 47 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSH 47 (103)
T ss_pred eHHHHHhhhccccccc
Confidence 4556676666666543
No 157
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=30.65 E-value=1.5e+02 Score=26.00 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHHHHHHHHhcc
Q 025047 209 VQSGNTALQKAKKLQKNSRKWMCI-AIIILLIIVAIIVVAVIKP 251 (258)
Q Consensus 209 v~~~~~~L~kA~~~q~~~rk~~~~-~~~~~~iv~~ii~~~i~~~ 251 (258)
.+...=+..+..+.-++++-.||+ ++..++-+++++.++++.|
T Consensus 23 ~~a~~~~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia~llP 66 (239)
T COG3736 23 KEARNWEEDRVIKLERSRRLAWRVAILFTLLAVAAVIAIAILLP 66 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444444444444322222 2222333333344444444
No 158
>PF15106 TMEM156: TMEM156 protein family
Probab=30.63 E-value=44 Score=28.72 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 025047 228 KWMCIAIIILLIIVAIIVVAVIK 250 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i~~ 250 (258)
|..|+. ++++|+++.|+++|-|
T Consensus 175 KITWYv-LVllVfiflii~iI~K 196 (226)
T PF15106_consen 175 KITWYV-LVLLVFIFLIILIIYK 196 (226)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHH
Confidence 444443 3333334444444533
No 159
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=30.60 E-value=2e+02 Score=26.25 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025047 30 IKKRMEKDVDEVGKISRFIKSKIEELDREN 59 (258)
Q Consensus 30 l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~ 59 (258)
--++|+.+...|...+..+..-|+.|..+.
T Consensus 228 H~~QM~s~~~nIe~~~~~~~~~Ldklh~ei 257 (384)
T KOG0972|consen 228 HLEQMNSMHKNIEQKVGNVGPYLDKLHKEI 257 (384)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 336777777778888888888888877764
No 160
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=30.57 E-value=82 Score=27.79 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 025047 194 MLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIIL 237 (258)
Q Consensus 194 ~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~ 237 (258)
.+++|-..|++-..+++.|.+.|.+-.+...+..+|.+.+...+
T Consensus 91 ~v~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~ 134 (250)
T COG2966 91 EVNRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGL 134 (250)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHH
Confidence 46677777777778889999999888777777778866544433
No 161
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=30.21 E-value=53 Score=27.73 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC
Q 025047 229 WMCIAIIILLIIVAIIVVAVIKPWSS 254 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~~i~~~~~~ 254 (258)
+-+|+.|++++-++.|+++++|++++
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~KF~ks 186 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYKFCKS 186 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhccC
Confidence 45677777777777777777887764
No 162
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=29.94 E-value=71 Score=22.57 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=4.6
Q ss_pred HHhhchhh
Q 025047 221 KLQKNSRK 228 (258)
Q Consensus 221 ~~q~~~rk 228 (258)
+|-+++|+
T Consensus 8 ~Y~rrSr~ 15 (72)
T PF13198_consen 8 EYPRRSRK 15 (72)
T ss_pred HccchhHH
Confidence 45566665
No 163
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.85 E-value=49 Score=20.73 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=2.8
Q ss_pred HhccccC
Q 025047 248 VIKPWSS 254 (258)
Q Consensus 248 i~~~~~~ 254 (258)
++..|+.
T Consensus 32 l~~~~rR 38 (40)
T PF08693_consen 32 LFFWYRR 38 (40)
T ss_pred hheEEec
Confidence 3434443
No 164
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.47 E-value=3.8e+02 Score=23.32 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=26.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025047 187 LVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 225 (258)
Q Consensus 187 lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~ 225 (258)
-.+.|+.++-.|..-|.++....-.-+.=| ...+.+|+
T Consensus 171 ~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll-~kIk~kkr 208 (231)
T KOG3208|consen 171 NLHSQRSVLGGINNKVNNIANRFPAINQLL-QKIKIKKR 208 (231)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHH-HHHHHHhh
Confidence 356799999999999988887776555444 44444443
No 165
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=29.41 E-value=1.9e+02 Score=27.65 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025047 162 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 210 (258)
Q Consensus 162 ~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 210 (258)
.|....+.++.....+|.|..+.-.|+..|...+...|.+|+....-|.
T Consensus 52 tk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 52 TKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 3556677888888999999999999999999999999999998776654
No 166
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=28.88 E-value=1.7e+02 Score=19.15 Aligned_cols=51 Identities=8% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 025047 164 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNT 214 (258)
Q Consensus 164 ~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~ 214 (258)
+..|..|..-..+++.+..+=+.++..=...+|....++..+...+.++.+
T Consensus 10 ~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 10 EQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555666666666666666666666665543
No 167
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=28.81 E-value=6.9e+02 Score=26.12 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 025047 180 IFLDMAVLVDAQGDMLDNIESQVSS 204 (258)
Q Consensus 180 lf~dl~~lV~~Qge~id~Ie~nv~~ 204 (258)
...++-..|.++|+.+|....++..
T Consensus 373 vv~~~~r~l~q~~~~l~~~a~~l~~ 397 (865)
T KOG4331|consen 373 VVDDVMRDLPQIPGDLDGLAEKLPS 397 (865)
T ss_pred cchHHHHHHHhCCchHHHHHhhccH
Confidence 3344444557789999999888887
No 168
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.48 E-value=87 Score=23.32 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 025047 234 IIILLIIVAII 244 (258)
Q Consensus 234 ~~~~~iv~~ii 244 (258)
+++++|+++.+
T Consensus 10 l~i~~i~~l~l 20 (97)
T COG1930 10 LAIGIILALPL 20 (97)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 169
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=28.39 E-value=48 Score=23.55 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025047 229 WMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~~i 248 (258)
+.++..++++++++++++.+
T Consensus 4 ~~~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 4 ASIIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred ehHHHHHHHHHHhheeEEEE
Confidence 34445555555455455433
No 170
>PF15102 TMEM154: TMEM154 protein family
Probab=28.20 E-value=43 Score=27.11 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.4
Q ss_pred HHHHHH
Q 025047 230 MCIAII 235 (258)
Q Consensus 230 ~~~~~~ 235 (258)
++++|+
T Consensus 59 LmIlIP 64 (146)
T PF15102_consen 59 LMILIP 64 (146)
T ss_pred EEEeHH
Confidence 334444
No 171
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.77 E-value=2.2e+02 Score=20.03 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 025047 230 MCIAIIILLII 240 (258)
Q Consensus 230 ~~~~~~~~~iv 240 (258)
+.+++++++++
T Consensus 49 IlYG~viGlli 59 (70)
T TIGR01149 49 ILYGLVIGLIL 59 (70)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 172
>PHA02642 C-type lectin-like protein; Provisional
Probab=27.65 E-value=32 Score=29.76 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=4.7
Q ss_pred hHHHHHHHHH
Q 025047 228 KWMCIAIIIL 237 (258)
Q Consensus 228 k~~~~~~~~~ 237 (258)
|+.||.++|+
T Consensus 49 ~~~~c~~~i~ 58 (216)
T PHA02642 49 KLYCCIITIC 58 (216)
T ss_pred ceeeeeehHH
Confidence 5555444443
No 173
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=27.61 E-value=21 Score=24.70 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=0.5
Q ss_pred HHHhccccCCCC
Q 025047 246 VAVIKPWSSNKG 257 (258)
Q Consensus 246 ~~i~~~~~~~~~ 257 (258)
+.+.+-++++-|
T Consensus 31 f~iyR~rkkdEG 42 (64)
T PF01034_consen 31 FLIYRMRKKDEG 42 (64)
T ss_dssp ------S-----
T ss_pred HHHHHHHhcCCC
Confidence 333444455544
No 174
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=27.52 E-value=2.1e+02 Score=28.22 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 025047 228 KWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i 248 (258)
|.+|+.++++||+++++-|..
T Consensus 478 K~LWIsvAliVLLAaLlSfLt 498 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLT 498 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444433
No 175
>PHA02690 hypothetical protein; Provisional
Probab=27.08 E-value=2.5e+02 Score=20.36 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 194 MLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 194 ~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
-+|.|+.-.-....|.+.-..+++.
T Consensus 9 rV~gi~~Ra~adrrYLeAIqrhlEg 33 (90)
T PHA02690 9 RVDGIVERARADRRYLEAIQRHLEG 33 (90)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 4555555555555555555555543
No 176
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=27.05 E-value=3.5e+02 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025047 159 EIQERHDAVRDLERKLLE 176 (258)
Q Consensus 159 ~i~~R~~~i~~ie~~i~e 176 (258)
-+..|...+..+...++.
T Consensus 56 ~lr~Rydrlr~va~rvQ~ 73 (156)
T PF08372_consen 56 SLRMRYDRLRSVAGRVQN 73 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788777777665443
No 177
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.56 E-value=51 Score=30.62 Aligned_cols=21 Identities=19% Similarity=0.724 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 025047 228 KWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i 248 (258)
.|+.++++++++++.++++|+
T Consensus 189 ~~~vl~~~fvl~tlaivLFPL 209 (372)
T KOG2927|consen 189 MWQVLGVLFVLVTLAIVLFPL 209 (372)
T ss_pred hHHHHHHHHHHHHHHHHhccc
Confidence 455555555555555555544
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.18 E-value=5.8e+02 Score=24.39 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 217 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~ 217 (258)
+.+-..+|..+++.|.+..+-+..|...+.++..-++.|+.-+-.+.....+...++.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 4444566777777777777777777777777777777777776666665555544443
No 179
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=26.11 E-value=1.5e+02 Score=19.52 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 025047 228 KWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~ 246 (258)
+|+.+++++.+|++++-++
T Consensus 22 ~ww~~~f~~tivfa~~Y~~ 40 (51)
T PF14715_consen 22 RWWLWLFYGTIVFAVGYLV 40 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655443
No 180
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=26.07 E-value=49 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 025047 26 AMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT 61 (258)
Q Consensus 26 ~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~ 61 (258)
.+|++++=++....+.-+.-.++....+++++...+
T Consensus 56 nDpEmK~iid~~n~eaikkyqqT~~~f~e~~e~~~k 91 (295)
T TIGR01478 56 NDPELKEIIDKLNEEAIKKYQETHDPYEQLQELVEK 91 (295)
T ss_pred CcHHHHHHHHHHhHHHhhhhhhhcchHHHHHHHHHh
Confidence 567888888887776767777777777777665443
No 181
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.04 E-value=1.3e+02 Score=24.78 Aligned_cols=37 Identities=5% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 025047 194 MLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM 230 (258)
Q Consensus 194 ~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~ 230 (258)
.++++-.++....-..+++.+.|++-.+......+|.
T Consensus 69 ~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~ 105 (193)
T PF06738_consen 69 AVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWL 105 (193)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHH
Confidence 3455556666666678888899977777665555553
No 182
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.97 E-value=5.4e+02 Score=23.96 Aligned_cols=60 Identities=8% Similarity=0.262 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 32 KRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENI 103 (258)
Q Consensus 32 ~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~~f~~~~~~f~~~Q~~~ 103 (258)
+++......|......++..|+.|..+.... .++|... -..|.+.|...+.+|+..+...
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~-----------lekI~sR-Ek~iN~qle~l~~eYr~~~~~l 282 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKT-----------LEKIESR-EKYINNQLEPLIQEYRSAQDEL 282 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----------HHHHHHH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 5666667777777777788888777765321 2222211 2344455666666666554433
No 183
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=25.60 E-value=3.4e+02 Score=25.67 Aligned_cols=10 Identities=40% Similarity=0.786 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 025047 172 RKLLELQQIF 181 (258)
Q Consensus 172 ~~i~eL~~lf 181 (258)
..+..|.++|
T Consensus 125 ~~l~~Le~~~ 134 (406)
T PF04906_consen 125 QHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHh
Confidence 3344444444
No 184
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.54 E-value=75 Score=28.13 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHHH
Q 025047 227 RKWMCIAIIILLIIV 241 (258)
Q Consensus 227 rk~~~~~~~~~~iv~ 241 (258)
||+.++++++.++++
T Consensus 195 RkR~i~f~llgllfl 209 (256)
T PF09788_consen 195 RKRAIIFFLLGLLFL 209 (256)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444333333
No 185
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.39 E-value=63 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025047 230 MCIAIIILLIIVAIIVV 246 (258)
Q Consensus 230 ~~~~~~~~~iv~~ii~~ 246 (258)
.+++++++++++++.++
T Consensus 9 iii~li~i~li~~~~~~ 25 (85)
T PF11337_consen 9 IIIILIVISLIIGIYYF 25 (85)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555444443333
No 186
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.33 E-value=64 Score=25.31 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 025047 232 IAIIILLIIVAII 244 (258)
Q Consensus 232 ~~~~~~~iv~~ii 244 (258)
++|+++++.++|.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3333333333333
No 187
>PTZ00370 STEVOR; Provisional
Probab=25.13 E-value=52 Score=29.67 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 025047 26 AMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT 61 (258)
Q Consensus 26 ~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~ 61 (258)
++|++++=++....+.-+.-.++.+..+++++...+
T Consensus 55 NDpemK~i~d~~n~eaikkyqqT~~~f~e~~e~~~k 90 (296)
T PTZ00370 55 NDPELKEIIDKMNEEAIKKYQQTHDPYEQLKEVVEK 90 (296)
T ss_pred CcHHHHHHHHHHhHHHhhhhhhhcchHHHHHHHHHh
Confidence 678888888888887777777777777777665443
No 188
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=24.74 E-value=81 Score=28.95 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcc
Q 025047 227 RKWMCIAIIILLIIVAIIVVAVIKP 251 (258)
Q Consensus 227 rk~~~~~~~~~~iv~~ii~~~i~~~ 251 (258)
.||+++++.++++++.++...+..|
T Consensus 30 ~k~~Ii~~~~~~~~lg~~Ya~~a~p 54 (325)
T PRK15471 30 GKMTIIISVIVAIALAVGYLAVAKE 54 (325)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3455444444444444444444445
No 189
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.71 E-value=25 Score=31.84 Aligned_cols=7 Identities=0% Similarity=-0.097 Sum_probs=0.0
Q ss_pred hccccCC
Q 025047 249 IKPWSSN 255 (258)
Q Consensus 249 ~~~~~~~ 255 (258)
.+.+++|
T Consensus 170 yrrkR~G 176 (290)
T PF05454_consen 170 YRRKRKG 176 (290)
T ss_dssp -------
T ss_pred hhhhhcc
Confidence 3333444
No 190
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=24.69 E-value=2e+02 Score=18.53 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 220 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~ 220 (258)
+.+-...+..|.....++..+..+=|..|+.=...++....++..+...+..|.
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~ 60 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444555555555555444444444444445555555555555554444
No 191
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.65 E-value=7.2e+02 Score=24.91 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIE 199 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie 199 (258)
+....++.-+.+..||+.|.+|-..|.+=|...-.|.
T Consensus 545 kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEir 581 (594)
T PF05667_consen 545 KDEAARKAYKLLASLHENCSQLIETVEETGTISREIR 581 (594)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556777888999999999999999999988766553
No 192
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=24.11 E-value=3.3e+02 Score=23.25 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=34.6
Q ss_pred chHHHHHHHHHcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025047 137 SEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQ 201 (258)
Q Consensus 137 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~n 201 (258)
++.++. .+.+.++..+..+|.+-+.=|.+|..++..|..|.+--.+|..|+..=..|.+-|+.=
T Consensus 105 se~YWk-~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l 168 (200)
T PF07412_consen 105 SENYWK-ELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERL 168 (200)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 3444455555566666666666666666666665555555544444444444444433
No 193
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.04 E-value=81 Score=26.50 Aligned_cols=6 Identities=33% Similarity=-0.136 Sum_probs=2.5
Q ss_pred HHhccc
Q 025047 247 AVIKPW 252 (258)
Q Consensus 247 ~i~~~~ 252 (258)
++.+..
T Consensus 53 ~~~~~~ 58 (181)
T PRK06654 53 FVSKMV 58 (181)
T ss_pred hhhhhh
Confidence 344443
No 194
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.93 E-value=8.6e+02 Score=25.52 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=19.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025047 31 KKRMEKDVDEVGKISRFIKSKIEELDREN 59 (258)
Q Consensus 31 ~~~i~~l~~~i~~~~~~ik~~L~~l~~~~ 59 (258)
...|+.....=.-+.+.|+..+..++++.
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777777887777664
No 195
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=23.80 E-value=3.3e+02 Score=20.68 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAV 206 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~ 206 (258)
+.|..+...+.-.-+-...+..-+..||+.++.|..-+..-.
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~in 94 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSIN 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666666688888888876665543
No 196
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.65 E-value=1e+02 Score=20.12 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 025047 229 WMCIAIIILLII 240 (258)
Q Consensus 229 ~~~~~~~~~~iv 240 (258)
|.||.+++++++
T Consensus 5 wywivli~lv~~ 16 (54)
T PF13260_consen 5 WYWIVLIVLVVV 16 (54)
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
No 197
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=1.1e+02 Score=20.93 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=5.4
Q ss_pred HHHHHhccccC
Q 025047 244 IVVAVIKPWSS 254 (258)
Q Consensus 244 i~~~i~~~~~~ 254 (258)
++..++.|.++
T Consensus 25 vi~~ayr~~~K 35 (60)
T COG4736 25 VIYFAYRPGKK 35 (60)
T ss_pred HHHHHhcccch
Confidence 33345556544
No 198
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=23.35 E-value=4.6e+02 Score=22.14 Aligned_cols=70 Identities=21% Similarity=0.388 Sum_probs=38.7
Q ss_pred HHhCCCchHHHHHHHHHcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 025047 131 LIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVD 207 (258)
Q Consensus 131 ~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~ 207 (258)
++++|++-.|....-.+..-+-.-..+..+..|...+.+|++--.++-. .+.+||-+-+.+...+..|..
T Consensus 18 Ll~eG~TvPFIARYRKe~TG~Lde~~lR~i~~~~~~~~~L~~Rk~~il~-------~i~eqgkLt~eL~~~I~~a~t 87 (193)
T PF09371_consen 18 LLDEGNTVPFIARYRKEMTGGLDEVQLREIQDRYEYLRELEKRKESILK-------SIEEQGKLTPELKQAIENATT 87 (193)
T ss_dssp HHHTT--HHHHHHH-HHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTT---HHHHHHHHH--S
T ss_pred HHhCCCCcchhhhhhhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcccCCHHHHHHHHhcCC
Confidence 6677887777776543210000113466777888777777766655543 466888888888888877654
No 199
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.30 E-value=2.4e+02 Score=18.97 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 192 GDMLDNIESQVSSAVDHVQSGNTALQKAK 220 (258)
Q Consensus 192 ge~id~Ie~nv~~a~~~v~~~~~~L~kA~ 220 (258)
..-||.+...|......+..|..+-..|.
T Consensus 16 ~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 16 NSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544443
No 200
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.11 E-value=1.2e+02 Score=21.62 Aligned_cols=6 Identities=50% Similarity=1.415 Sum_probs=3.0
Q ss_pred ccCCCC
Q 025047 252 WSSNKG 257 (258)
Q Consensus 252 ~~~~~~ 257 (258)
|++++|
T Consensus 30 ~~~~~g 35 (75)
T PF06667_consen 30 WKSSQG 35 (75)
T ss_pred cccCCC
Confidence 455554
No 201
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.82 E-value=1.3e+02 Score=23.42 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 155 DTLAEIQERHDAVRDLERKLLELQQIFLDM 184 (258)
Q Consensus 155 ~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl 184 (258)
..|.-+-++.+++.+|..++.+|.+||...
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999864
No 202
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.77 E-value=81 Score=27.17 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 025047 235 IILLIIVAIIVVA 247 (258)
Q Consensus 235 ~~~~iv~~ii~~~ 247 (258)
+|+|||++++++.
T Consensus 132 IClIIIAVLfLIC 144 (227)
T PF05399_consen 132 ICLIIIAVLFLIC 144 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 203
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.64 E-value=1.6e+02 Score=19.76 Aligned_cols=19 Identities=21% Similarity=0.585 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 025047 227 RKWMCIAIIILLIIVAIIV 245 (258)
Q Consensus 227 rk~~~~~~~~~~iv~~ii~ 245 (258)
|+|..+++++++++++-++
T Consensus 29 rP~~Ll~~li~Vv~gl~ll 47 (55)
T PF11293_consen 29 RPWRLLIVLIVVVIGLGLL 47 (55)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5666655555555554443
No 204
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=22.64 E-value=69 Score=22.86 Aligned_cols=20 Identities=15% Similarity=0.463 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 025047 233 AIIILLIIVAIIVVAVIKPW 252 (258)
Q Consensus 233 ~~~~~~iv~~ii~~~i~~~~ 252 (258)
.+++++++.++++++.+..|
T Consensus 35 viPl~L~LCiLvl~yai~~f 54 (74)
T PF11857_consen 35 VIPLVLLLCILVLIYAIFQF 54 (74)
T ss_pred eHHHHHHHHHHHHHHHhhee
Confidence 34444444333333333333
No 205
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.57 E-value=6e+02 Score=23.24 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=5.4
Q ss_pred CCchhHHHHHH
Q 025047 70 KGTGVDRSRTA 80 (258)
Q Consensus 70 ~~s~~~rirk~ 80 (258)
.+++...||+.
T Consensus 333 DGaplvkIkqa 343 (384)
T KOG0972|consen 333 DGAPLVKIKQA 343 (384)
T ss_pred CCchHHHHHHH
Confidence 34455555544
No 206
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=22.36 E-value=83 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 025047 229 WMCIAIIILLIIVAIIVVAVIK 250 (258)
Q Consensus 229 ~~~~~~~~~~iv~~ii~~~i~~ 250 (258)
+++.+++++++++++|.+|++.
T Consensus 63 K~~~G~~~~~~li~iiw~PLll 84 (422)
T PF12166_consen 63 KYLMGGLLLLLLIIIIWFPLLL 84 (422)
T ss_pred EeeehHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666654
No 207
>PF15102 TMEM154: TMEM154 protein family
Probab=22.05 E-value=36 Score=27.55 Aligned_cols=7 Identities=14% Similarity=-0.078 Sum_probs=3.0
Q ss_pred HhccccC
Q 025047 248 VIKPWSS 254 (258)
Q Consensus 248 i~~~~~~ 254 (258)
+.+.|+.
T Consensus 81 ~~kRkr~ 87 (146)
T PF15102_consen 81 YYKRKRT 87 (146)
T ss_pred EEeeccc
Confidence 3444433
No 208
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.69 E-value=2.8e+02 Score=19.15 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 025047 26 AMKAIKKRMEKDVDEVGKISRFIKSKI 52 (258)
Q Consensus 26 ~~~~l~~~i~~l~~~i~~~~~~ik~~L 52 (258)
+.+.++.+++.+...-..+...+...-
T Consensus 74 ~~~~i~~~~~~l~~~w~~l~~~~~~r~ 100 (105)
T PF00435_consen 74 DSDEIQEKLEELNQRWEALCELVEERR 100 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 209
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=21.68 E-value=2.4e+02 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLV 188 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV 188 (258)
.++..++.+|..|++=..-|+.+|
T Consensus 435 ~d~~~~~~~i~~l~~~~~sl~~~v 458 (561)
T PF00429_consen 435 EDLQALEDSISALQEQLTSLAEVV 458 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 210
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.59 E-value=6.2e+02 Score=23.01 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025047 161 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 213 (258)
Q Consensus 161 ~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 213 (258)
.+-...+..|...+.++.++...++.-..+|...++.|..++.....-+....
T Consensus 327 ~~~~~~~~~i~~~i~~i~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 379 (408)
T COG0840 327 EETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEELDDVTQENA 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344578888999999999999999999999999999888888777666665
No 211
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=21.40 E-value=9.5e+02 Score=25.14 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 025047 172 RKLLELQQIFLDMAVLVDAQGDMLDNI 198 (258)
Q Consensus 172 ~~i~eL~~lf~dl~~lV~~Qge~id~I 198 (258)
..-.+..+...+|+.|+.+|..+.|.-
T Consensus 581 ~~~~~~~q~m~~L~dl~r~Qq~L~D~t 607 (820)
T PF13779_consen 581 QQQQEMQQAMEELGDLLRRQQQLMDET 607 (820)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888999999888764
No 212
>PRK00846 hypothetical protein; Provisional
Probab=21.35 E-value=3.2e+02 Score=19.61 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
.|..||..+.-.-+...+|+..|..|...||....-+..-.+.+..
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777777888888888777766665554443
No 213
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=21.30 E-value=6.6e+02 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025047 180 IFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 210 (258)
Q Consensus 180 lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 210 (258)
+|.++..-...-||.-.+++.-...+.+..+
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~ 355 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQE 355 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 5666666666667776666666665555443
No 214
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.26 E-value=4.6e+02 Score=21.46 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025047 199 ESQVSSAVDHVQSGNTALQKAKKLQK 224 (258)
Q Consensus 199 e~nv~~a~~~v~~~~~~L~kA~~~q~ 224 (258)
+..+......+..-...|+...+..|
T Consensus 126 ~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 126 ELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444544444433
No 215
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.22 E-value=5.3e+02 Score=22.14 Aligned_cols=26 Identities=12% Similarity=0.581 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccc
Q 025047 228 KWMCIAIIILLIIVAIIVVAVIKPWS 253 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i~~~~~ 253 (258)
-|.-|+++.+=|++++++.+++=||+
T Consensus 152 TwgT~~lmgvNvllFl~~~~~~EPwk 177 (207)
T PF05546_consen 152 TWGTWGLMGVNVLLFLVAQLLVEPWK 177 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 35555555555555555555666885
No 216
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.09 E-value=79 Score=28.73 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 025047 105 QEYREVV 111 (258)
Q Consensus 105 ~~~k~~~ 111 (258)
.++|+++
T Consensus 64 qkcKEqc 70 (299)
T PF02009_consen 64 QKCKEQC 70 (299)
T ss_pred HHHHHHh
Confidence 3444444
No 217
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.05 E-value=91 Score=24.72 Aligned_cols=26 Identities=38% Similarity=0.658 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCC
Q 025047 230 MCIAIIILLIIVAIIVVAVIKPWSSN 255 (258)
Q Consensus 230 ~~~~~~~~~iv~~ii~~~i~~~~~~~ 255 (258)
+|-+++-+++++.++++.-.+|+.+|
T Consensus 107 ~~aclit~l~~~~i~~~i~~kpR~~n 132 (139)
T PF04881_consen 107 ICACLITALLCVCIHLLIKIKPRNSN 132 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeccccCc
Confidence 44455556666666666667777665
No 218
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.88 E-value=1.1e+02 Score=23.73 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 025047 226 SRKWMCIAIIILLIIVAIIVVAV 248 (258)
Q Consensus 226 ~rk~~~~~~~~~~iv~~ii~~~i 248 (258)
++..++++++++++|-+.++.++
T Consensus 59 ~~~lffvglii~LivSLaLVsFv 81 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFV 81 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHH
Confidence 34555556666555555544333
No 219
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=20.84 E-value=97 Score=26.84 Aligned_cols=23 Identities=9% Similarity=0.553 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 025047 228 KWMCIAIIILLIIVAIIVVAVIK 250 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i~~ 250 (258)
+|+.+++++.+++++++.+..++
T Consensus 186 ~W~i~~~v~~i~~i~vv~i~~ir 208 (226)
T PHA02662 186 PWTLLLAVAAVTVLGVVAVSLLR 208 (226)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 77766666634444444444444
No 220
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.76 E-value=1e+02 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=24.4
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 025047 221 KLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKG 257 (258)
Q Consensus 221 ~~q~~~rk~~~~~~~~~~iv~~ii~~~i~~~~~~~~~ 257 (258)
+|.+++.-+++++.++++++++.+.+.....-+.+||
T Consensus 192 ~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~g 228 (256)
T PF09788_consen 192 RFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGG 228 (256)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCc
Confidence 5777888777777777777777776655444334433
No 221
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.72 E-value=2e+02 Score=20.63 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLV 188 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV 188 (258)
++++..+|..++..+....++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677778888888888888888776654
No 222
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=20.70 E-value=7.6e+02 Score=23.71 Aligned_cols=118 Identities=25% Similarity=0.326 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHhhh--hhccCCCCCHHHHHHHHhCCCch--HHHHHHHH-Hcchhh
Q 025047 82 TLGLKKKFKDKMGEFQVLRENIHQE-YREV---VERRV--YTVTGKRADEETIDQLIETGDSE--QIFQKAIQ-EQGRGQ 152 (258)
Q Consensus 82 ~~~L~~~f~~~~~~f~~~Q~~~~~~-~k~~---~~rr~--~~i~~~~~t~eeie~~~~~~~~~--~~~q~~l~-~~~~~q 152 (258)
.-++...+...+.+|+..+...... +.+. +..-| ....|..+|.+|.-+.++..+++ .++..... +....|
T Consensus 258 Ll~i~~~~~~ii~~~r~~K~~~~~~~~~~~~~~i~~ly~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQ 337 (445)
T PF13608_consen 258 LLQIANTIRNIINEHRQLKRRAAEEKEEKEEDEIEHLYMLCKKHGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQ 337 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEec
Confidence 3444566666777776655433222 1111 11112 22347788999988887754443 34443331 111122
Q ss_pred hhhh----HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025047 153 IMDT----LAE------------IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 204 (258)
Q Consensus 153 ~~~~----l~~------------i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~ 204 (258)
++.. ++. =.+|...+-++ +..|..+|.=++.-|..|+ ||.|++..+.
T Consensus 338 aK~~~e~~lEkIiAf~aL~~M~FD~ERSD~VyKi---LnKlK~v~st~~~~V~hQS--LDdi~~~~ee 400 (445)
T PF13608_consen 338 AKTASEKNLEKIIAFVALLMMMFDAERSDCVYKI---LNKLKGVFSTMGQDVRHQS--LDDIEDIFEE 400 (445)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhCchhhHHHHHH---HHHHHHHHhccCCCccCCC--ccchhhhhhh
Confidence 2211 111 12677776665 4556666777777788887 8888876653
No 223
>PF05802 EspB: Enterobacterial EspB protein
Probab=20.62 E-value=6.4e+02 Score=22.83 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVD----AQGDMLDNIESQVSSA 205 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~----~Qge~id~Ie~nv~~a 205 (258)
+-.|..-|.+|.+||.+|-.+.. .|.+.==+|..|+.+.
T Consensus 43 ~adIs~lileL~eL~kKLRdiLq~YNQKQQ~LgW~IQvasmqt 85 (317)
T PF05802_consen 43 IADISDLILELAELFKKLRDILQDYNQKQQELGWEIQVASMQT 85 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44556667777777777666553 3444444455444443
No 224
>PF08009 CDP-OH_P_tran_2: CDP-alcohol phosphatidyltransferase 2; InterPro: IPR012616 This domain is found on CDP-alcohol phosphatidyltransferases. These enzymes catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=20.24 E-value=82 Score=19.57 Aligned_cols=16 Identities=19% Similarity=0.592 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhccc
Q 025047 237 LLIIVAIIVVAVIKPW 252 (258)
Q Consensus 237 ~~iv~~ii~~~i~~~~ 252 (258)
++.+++++.+.+..||
T Consensus 9 ~~~v~l~~a~Lis~PW 24 (39)
T PF08009_consen 9 ILLVGLYAALLISYPW 24 (39)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 3334444444466676
No 225
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.12 E-value=6.6e+02 Score=22.82 Aligned_cols=93 Identities=13% Similarity=0.224 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch----hhHHHHH
Q 025047 158 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNS----RKWMCIA 233 (258)
Q Consensus 158 ~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~----rk~~~~~ 233 (258)
.-+.+-.+=+.+=..++..+-.-..+|+.+..+=..||-.=+.-+....++|..+.-++..|..-=.|. .+=.|+.
T Consensus 213 ~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLm 292 (311)
T KOG0812|consen 213 ALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLM 292 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 334444555666678888888889999999988889999999999999999999999998886554443 2346888
Q ss_pred HHHHHHHHHHHHHHHhc
Q 025047 234 IIILLIIVAIIVVAVIK 250 (258)
Q Consensus 234 ~~~~~iv~~ii~~~i~~ 250 (258)
+=|+.|++++++++++.
T Consensus 293 vkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 293 VKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888887764
No 226
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.02 E-value=3.2e+02 Score=19.17 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAV 186 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~ 186 (258)
..+|++...--.++|..|..
T Consensus 6 ~l~L~R~~~~~~~~Y~~Ll~ 25 (82)
T PF13807_consen 6 YLRLQRDVEIKRELYETLLQ 25 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666644
Done!