Query 025047
Match_columns 258
No_of_seqs 155 out of 1265
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 3E-40 1E-44 291.8 10.8 219 8-232 44-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 1.1E-34 3.9E-39 257.6 8.2 198 24-227 78-279 (279)
3 3hd7_B Syntaxin-1A; membrane p 100.0 8.1E-29 2.8E-33 190.2 14.7 97 152-248 8-104 (109)
4 1fio_A SSO1 protein; four heli 100.0 1.5E-27 5E-32 201.1 16.5 171 8-192 25-196 (196)
5 1jth_B Syntaxin 1A; coiled-coi 99.9 9.5E-25 3.2E-29 157.5 10.5 77 156-232 1-77 (77)
6 2nps_B Syntaxin 13, vesicle-as 99.9 1E-22 3.5E-27 144.6 9.8 70 161-230 2-71 (71)
7 1sfc_B Protein (syntaxin 1A), 99.9 2.5E-22 8.5E-27 146.8 10.4 76 152-227 8-83 (83)
8 3b5n_B Protein SSO1; snare com 99.9 1.8E-21 6.2E-26 137.3 10.8 69 156-224 1-69 (69)
9 3c98_B Syntaxin-1A; protein co 99.8 7.9E-21 2.7E-25 166.2 11.2 219 8-232 56-279 (279)
10 1n7s_B Syntaxin 1A; neuronal s 99.8 2.9E-20 9.8E-25 130.8 9.1 66 155-220 2-67 (68)
11 1gl2_B Syntaxin 7; membrane pr 99.8 1.2E-19 4.1E-24 126.4 8.3 63 159-221 3-65 (65)
12 1s94_A S-syntaxin; three helix 99.7 8.4E-18 2.9E-22 139.8 6.0 122 8-135 59-180 (180)
13 1ez3_A Syntaxin-1A; three heli 99.4 7.7E-13 2.6E-17 103.5 11.4 99 7-110 27-125 (127)
14 2dnx_A Syntaxin-12; snare, HAB 98.6 8.5E-07 2.9E-11 69.5 13.6 97 7-111 26-122 (130)
15 1hs7_A Syntaxin VAM3; UP-and-D 97.6 0.00047 1.6E-08 50.8 8.9 78 6-108 14-92 (97)
16 3hd7_B Syntaxin-1A; membrane p 97.4 0.0072 2.5E-07 45.4 13.5 86 156-245 19-104 (109)
17 2nps_D Syntaxin-6; vesicle fus 97.2 0.0013 4.5E-08 47.0 7.8 66 160-225 14-79 (82)
18 1n7s_D SNAP-25A; neuronal snar 97.1 0.0052 1.8E-07 41.9 9.7 55 164-218 9-63 (66)
19 1gl2_D Syntaxin 8, vesicle tra 97.0 0.0028 9.5E-08 43.1 7.4 58 161-218 5-62 (65)
20 1sfc_D Protein (SNAP-25B), pro 96.9 0.0094 3.2E-07 43.0 9.7 57 162-218 26-82 (87)
21 3hd7_A Vesicle-associated memb 96.9 0.039 1.3E-06 40.0 12.9 57 166-225 6-62 (91)
22 1l4a_D S-SNAP25 fusion protein 96.5 0.011 3.8E-07 42.6 7.6 56 163-218 28-83 (87)
23 3b5n_D Protein transport prote 96.4 0.032 1.1E-06 37.8 9.2 55 164-218 9-63 (64)
24 1nhl_A Synaptosomal-associated 95.0 0.2 7E-06 32.5 8.3 43 175-217 10-52 (54)
25 3b5n_C Protein transport prote 93.7 0.88 3E-05 31.2 9.6 37 186-222 33-69 (70)
26 1n7s_C SNAP-25A; neuronal snar 93.4 1.4 4.6E-05 30.9 10.7 52 167-218 25-76 (79)
27 2kog_A Vesicle-associated memb 92.7 0.022 7.5E-07 43.5 0.2 37 167-203 35-71 (119)
28 1l4a_C S-SNAP25 fusion protein 89.4 1.6 5.6E-05 30.8 7.3 35 182-216 44-78 (83)
29 2nps_B Syntaxin 13, vesicle-as 83.6 8.1 0.00028 26.0 8.5 63 158-220 6-68 (71)
30 3hd7_A Vesicle-associated memb 76.9 17 0.00059 25.7 12.8 12 158-169 26-37 (91)
31 1jth_B Syntaxin 1A; coiled-coi 75.6 16 0.00056 24.8 9.5 65 157-221 9-73 (77)
32 1gl2_C VTI1B, vesicle transpor 73.7 17 0.00058 24.1 8.8 47 171-217 15-61 (65)
33 1n7s_B Syntaxin 1A; neuronal s 71.6 19 0.00066 23.9 9.6 56 158-213 12-67 (68)
34 3b5n_B Protein SSO1; snare com 67.0 25 0.00085 23.4 9.8 57 158-214 10-66 (69)
35 2ww9_B Protein transport prote 66.0 4.4 0.00015 28.4 2.8 54 193-246 13-66 (80)
36 4dnd_A Syntaxin-10, SYN10; str 64.5 33 0.0011 26.0 7.9 84 8-92 40-124 (130)
37 3n27_A Fusion glycoprotein F0, 64.2 27 0.00091 24.2 6.5 62 159-222 14-75 (80)
38 1gl2_B Syntaxin 7; membrane pr 64.0 28 0.00096 22.9 8.3 56 158-213 9-64 (65)
39 1sfc_B Protein (syntaxin 1A), 59.0 41 0.0014 23.2 8.8 60 157-216 20-79 (83)
40 2kog_A Vesicle-associated memb 55.6 14 0.00046 27.8 4.2 7 218-224 83-89 (119)
41 2wvr_A Geminin; DNA replicatio 54.8 73 0.0025 26.1 8.6 69 138-207 96-164 (209)
42 2xhe_B Syntaxin1; exocytosis, 52.1 49 0.0017 28.0 7.8 63 165-227 210-272 (279)
43 2akh_X Protein-export membrane 49.2 15 0.00053 25.2 3.3 19 238-256 10-28 (77)
44 3ghg_A Fibrinogen alpha chain; 48.0 1.8E+02 0.0062 27.3 12.5 31 29-59 50-80 (562)
45 1uii_A Geminin; human, DNA rep 46.3 73 0.0025 22.2 8.5 51 139-190 28-78 (83)
46 1fjk_A Cardiac phospholamban; 44.5 12 0.00042 23.0 1.9 9 230-238 35-43 (52)
47 3efg_A Protein SLYX homolog; x 43.5 77 0.0026 21.7 6.3 46 166-211 15-60 (78)
48 1wlq_A Geminin; coiled-coil; 2 42.5 84 0.0029 21.9 7.9 60 138-198 19-78 (83)
49 2akf_A Coronin-1A; coiled coil 42.1 44 0.0015 18.5 4.8 28 169-203 3-30 (32)
50 1rh5_B Preprotein translocase 40.8 10 0.00035 26.0 1.3 35 197-231 4-38 (74)
51 2nps_C Vesicle transport throu 37.9 96 0.0033 21.2 11.2 57 165-221 19-75 (81)
52 1qu7_A Methyl-accepting chemot 36.5 1.7E+02 0.006 23.8 10.1 54 160-213 142-195 (227)
53 3zx6_A HAMP, methyl-accepting 35.4 2.2E+02 0.0075 24.6 12.0 54 160-213 222-275 (341)
54 2wwb_B SEC61gamma, protein tra 35.2 6 0.00021 26.8 -0.6 49 198-246 4-52 (68)
55 3fym_A Putative uncharacterize 34.5 8.3 0.00028 29.0 0.0 8 228-235 104-111 (130)
56 3p8c_F ABL interactor 2; actin 30.8 1.9E+02 0.0066 22.6 8.3 44 165-208 54-97 (159)
57 1ez3_A Syntaxin-1A; three heli 28.8 1.6E+02 0.0056 21.2 9.0 28 86-113 94-124 (127)
58 1sfc_A VAMP 2, protein (synapt 24.4 1.9E+02 0.0065 20.4 9.2 39 166-204 31-69 (96)
59 2l6w_A Beta-type platelet-deri 29.4 17 0.00057 21.7 0.0 6 249-254 29-34 (39)
60 3swy_A Cyclic nucleotide-gated 23.1 1.4E+02 0.0047 18.4 5.0 24 80-103 12-35 (46)
61 3arc_J Photosystem II reaction 23.0 1.3E+02 0.0043 17.9 3.9 27 228-254 9-35 (40)
62 3swf_A CGMP-gated cation chann 21.9 1.9E+02 0.0064 19.7 5.0 24 80-103 14-37 (74)
63 1yod_A Water-solublized phosph 20.0 76 0.0026 17.4 2.2 7 231-237 15-21 (30)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=3e-40 Score=291.80 Aligned_cols=219 Identities=25% Similarity=0.411 Sum_probs=169.3
Q ss_pred HHhHHHHHHHHhhhcC-----hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVTK-----APAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATT 82 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~-----~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~ 82 (258)
+.+|..++++++.+++ |..++.++.+|+.++.+++++++.|+..|+.|+...... +++.+++++.|+|++|+
T Consensus 44 I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~---~~~~~~~~e~Rirk~q~ 120 (267)
T 1dn1_B 44 IDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQH 120 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCHHHHHHHHHH
Confidence 4555555555555554 334568999999999999999999999999999875421 12234467789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHH
Q 025047 83 LGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQE 162 (258)
Q Consensus 83 ~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~ 162 (258)
.+|+++|+++|.+|+.+|..|.++++.++.| ++.|.||++|++++++++++|++..|.+..+.. ..+++.++.++++
T Consensus 121 ~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R-q~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~--~~~~~~~l~~i~~ 197 (267)
T 1dn1_B 121 STLSRKFVEVMSEYNATQSDYRERCKGRIQR-QLEITGRTTTSEELEDMLESGNPAIFASGIIMD--SSISKQALSEIET 197 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 567889999999999999998876554432322 2356778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 232 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~ 232 (258)
||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||+.|..+|.+|.+|++++|||.||
T Consensus 198 R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 198 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.1e-34 Score=257.62 Aligned_cols=198 Identities=24% Similarity=0.434 Sum_probs=143.3
Q ss_pred hhhhH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC-ch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 24 APAMK--AIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKG-TG-VDRSRTATTLGLKKKFKDKMGEFQVL 99 (258)
Q Consensus 24 ~~~~~--~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~-s~-~~rirk~q~~~L~~~f~~~~~~f~~~ 99 (258)
|.+++ .++.+|+.++.+|+++++.|+..|+.|..........++|.++ +. +.|++++++..|+++|+++|.+|+.+
T Consensus 78 ~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~ 157 (279)
T 2xhe_B 78 VSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDV 157 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 8999999999999999999999999999876433222223222 22 66999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 100 RENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQ 179 (258)
Q Consensus 100 Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~eL~~ 179 (258)
|..|...++.++.| ++.+.+|.+++++++.++++|++..|.+ .. ..++...+.++++|+++|.+||++|.||++
T Consensus 158 Q~~y~e~~k~~~~R-~~~i~~~~~~~ee~~~~~e~g~~~~f~q--~~---~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~ 231 (279)
T 2xhe_B 158 QAENKRRYGENVAR-QCRVVEPSLSDDAIQKVIEHGTEGIFSG--MR---LEGAEAKLNEIRDRHKDIQQLERSLLELHE 231 (279)
T ss_dssp HHHHHHHHHHTTTT-SCCSSCCCCSSTTHHHHHHHC----------------------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHhCCchHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888764 5678889999999999999887655443 11 112345677899999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 025047 180 IFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR 227 (258)
Q Consensus 180 lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~r 227 (258)
||.||+.||++||++||+||+||+.|..||+.|..+|.+|.+||+++|
T Consensus 232 if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 232 MFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp HHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 999999999999999999999999999999999999999999999876
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.96 E-value=8.1e-29 Score=190.23 Aligned_cols=97 Identities=37% Similarity=0.552 Sum_probs=88.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 025047 152 QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 231 (258)
Q Consensus 152 q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~ 231 (258)
+++++++++++||++|.+||++|.||++||.||+.||++||++||+||+||++|.+||+.|+.+|.+|.+||+++|||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025047 232 IAIIILLIIVAIIVVAV 248 (258)
Q Consensus 232 ~~~~~~~iv~~ii~~~i 248 (258)
|+++|++|+++++.+++
T Consensus 88 i~l~~~~i~~~i~~~~~ 104 (109)
T 3hd7_B 88 MIIICCVILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHh
Confidence 98888777766655433
No 4
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.95 E-value=1.5e-27 Score=201.11 Aligned_cols=171 Identities=22% Similarity=0.385 Sum_probs=140.5
Q ss_pred HHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKK 87 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~ 87 (258)
+..|..+|.......++.+.+.++.+|+.++.+|+++++.|+..|+.|+.... ..|++++++.+|++
T Consensus 25 v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~-------------~~r~~k~~~~~L~~ 91 (196)
T 1fio_A 25 INQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI-------------HDTNKQAQAENSRQ 91 (196)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-------------hhhHHHHHHHHHHH
Confidence 34455555554444444455689999999999999999999999999987631 25899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHH-cchhhhhhhHHHHHHHHHH
Q 025047 88 KFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQE-QGRGQIMDTLAEIQERHDA 166 (258)
Q Consensus 88 ~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~-~~~~q~~~~l~~i~~R~~~ 166 (258)
+|+++|.+|+.+|..|..+||+++.|+| .+.+|++++++++.++++++...+|+..+.. +++.++..+++++++||++
T Consensus 92 ~f~~~~~~fq~~Q~~~~~~~k~~~~rq~-~i~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~i~eR~~e 170 (196)
T 1fio_A 92 RFLKLIQDYRIVDSNYKEENKEQAKRQY-MIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQE 170 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCHHHHHHHHHcCCchhHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999775 4457899999999988754445667766543 3455677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQG 192 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qg 192 (258)
|.+||++|.|||+||.|||.||++||
T Consensus 171 I~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 171 LLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998
No 5
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.92 E-value=9.5e-25 Score=157.50 Aligned_cols=77 Identities=40% Similarity=0.626 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 025047 156 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 232 (258)
Q Consensus 156 ~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~ 232 (258)
+|+++++|+++|.+||++|.||++||.||+.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++|||+||
T Consensus 1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999998886
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.88 E-value=1e-22 Score=144.55 Aligned_cols=70 Identities=41% Similarity=0.646 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 025047 161 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM 230 (258)
Q Consensus 161 ~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~ 230 (258)
++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999884
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.88 E-value=2.5e-22 Score=146.77 Aligned_cols=76 Identities=41% Similarity=0.620 Sum_probs=70.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 025047 152 QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR 227 (258)
Q Consensus 152 q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~r 227 (258)
+++.++.++++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999875
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.86 E-value=1.8e-21 Score=137.29 Aligned_cols=69 Identities=38% Similarity=0.475 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025047 156 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 224 (258)
Q Consensus 156 ~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~ 224 (258)
+|+++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||+.|..+|.+|.+|+|
T Consensus 1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999999999999999999999999999985
No 9
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.84 E-value=7.9e-21 Score=166.25 Aligned_cols=219 Identities=24% Similarity=0.401 Sum_probs=154.3
Q ss_pred HHhHHHHHHHHhhhc-----ChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVT-----KAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATT 82 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~-----~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~ 82 (258)
+.+|....+++...+ ++.+.......++.++.+++.++..++..++.|......... .++...+.+.+.+|+
T Consensus 56 i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~---i~~~~~~i~~~~~qt 132 (279)
T 3c98_B 56 IDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG---LNRSSADLRIRKTQH 132 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccchHHHHHHHHHH
Confidence 344444444444333 234556788899999999999999999999999876544322 234467889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHH
Q 025047 83 LGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQE 162 (258)
Q Consensus 83 ~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~ 162 (258)
+.|...|..++..|...+..|...+++.+++. ....++.+++.+.......+....+..... ....++...+..+++
T Consensus 133 n~La~n~a~~~a~~~~~~~~~~~vva~evr~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~ 209 (279)
T 3c98_B 133 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFASGII--MDSSISKQALSEIET 209 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHSCCTTSSTTTSC--SCSSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCccchHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888653 455567777766554444444333222111 112334566889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 232 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~ 232 (258)
|+..+..|+.+|.+|+++|.+++.+|.+||+++|+|++||+.+.++|+.|..+|.+|.+|++++|||+||
T Consensus 210 ~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 210 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.82 E-value=2.9e-20 Score=130.79 Aligned_cols=66 Identities=42% Similarity=0.673 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 155 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 220 (258)
Q Consensus 155 ~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~ 220 (258)
++++++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999999999999995
No 11
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.80 E-value=1.2e-19 Score=126.44 Aligned_cols=63 Identities=37% Similarity=0.698 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 159 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 221 (258)
Q Consensus 159 ~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~ 221 (258)
.+++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||+.|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 588999999999999999999999999999999999999999999999999999999999864
No 12
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.70 E-value=8.4e-18 Score=139.81 Aligned_cols=122 Identities=14% Similarity=0.314 Sum_probs=74.7
Q ss_pred HHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKK 87 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~~ 87 (258)
+.+|..+|..+.. ++.+++.++.+|+.++.+|+.+++.|+..|+.|++.+... +++++++++.|+|++|+.+|++
T Consensus 59 v~~l~~~~~~~L~--~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Rir~~q~~~L~~ 133 (180)
T 1s94_A 59 VDAVKKKHSDILS--APQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE---EHSNKSSADLRIRKTQYSTISR 133 (180)
T ss_dssp HHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCCCcHHHHHHHHHHHHHHH
Confidence 4445555544433 3456788999999999999999999999999999886543 3455667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCC
Q 025047 88 KFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETG 135 (258)
Q Consensus 88 ~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~ 135 (258)
+|+++|.+|+.+|..|+.+||+++. ||+.|+||++|+++|++++++|
T Consensus 134 kf~~~m~~yq~~q~~y~~~~K~~i~-Rq~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 134 KFVEVMSDYNTTQIDYRDRCKARIK-RQMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHhCc
Confidence 9999999999999999999999998 5678899999999999999875
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.44 E-value=7.7e-13 Score=103.46 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=80.0
Q ss_pred hHHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHH
Q 025047 7 CEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLK 86 (258)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~ 86 (258)
.++.|..+|..+ +++|..++.++.+|+.++.+|+++++.|+..|+.|++.+... +++++++++.|+|++|+.+|+
T Consensus 27 ~v~~l~~~~~~~--L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Rir~~q~~~L~ 101 (127)
T 1ez3_A 27 NVEEVKRKHSAI--LASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLS 101 (127)
T ss_dssp HHHHHHHHHHHH--HHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCCcHHHHHHHHHHHHHH
Confidence 455666666655 334556788999999999999999999999999999987643 345677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 87 KKFKDKMGEFQVLRENIHQEYREV 110 (258)
Q Consensus 87 ~~f~~~~~~f~~~Q~~~~~~~k~~ 110 (258)
++|+++|.+|+.+|..|++.++.|
T Consensus 102 ~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 102 RKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776665555443
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=8.5e-07 Score=69.47 Aligned_cols=97 Identities=10% Similarity=0.187 Sum_probs=81.6
Q ss_pred hHHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHH
Q 025047 7 CEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLK 86 (258)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~ 86 (258)
+...+..+...++.++++.|.++|+++|+.+...++.+++.+...|+.|..... .....+.|-++.+...|.
T Consensus 26 In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~--------~~~~~~~r~~k~q~~KL~ 97 (130)
T 2dnx_A 26 ISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPL--------PLSTSEQRQQRLQKERLM 97 (130)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--------CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccccchHHHHHHHHHHHH
Confidence 345577888889999999999999999999999999999999999999986420 011245689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 87 KKFKDKMGEFQVLRENIHQEYREVV 111 (258)
Q Consensus 87 ~~f~~~~~~f~~~Q~~~~~~~k~~~ 111 (258)
++|..++++|+.+|..+.++.|.-+
T Consensus 98 ~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 98 NDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999998877765433
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=97.56 E-value=0.00047 Score=50.84 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=64.3
Q ss_pred hhHHhHHHHHHHHhhhcChhhhHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHH
Q 025047 6 FCEPGMQGAHEESKSVTKAPAMKAIKKRME-KDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLG 84 (258)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~-~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~ 84 (258)
-|-.+|+.+..+..++++..|+++|+.+|+ .+.-.++.+.+.+. .|..+ .+...
T Consensus 14 t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l------------------------~qkeR 68 (97)
T 1hs7_A 14 TFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI------------------------HQNGK 68 (97)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH------------------------HHCHH
T ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc------------------------chhhH
Confidence 356778888889999999999999999999 99999999999888 22111 04578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 85 LKKKFKDKMGEFQVLRENIHQEYR 108 (258)
Q Consensus 85 L~~~f~~~~~~f~~~Q~~~~~~~k 108 (258)
|..+|..+...|+.+|..|.++.+
T Consensus 69 L~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 69 LSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999988876553
No 16
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.35 E-value=0.0072 Score=45.45 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 025047 156 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAII 235 (258)
Q Consensus 156 ~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~ 235 (258)
-..++.+=++.|.+|..-..+|..|..+=+.++..=...+++...||+.+...+.+|.+.=+++++ ..-|++++++
T Consensus 19 R~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk----k~~i~l~~~~ 94 (109)
T 3hd7_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR----KKIMIIICCV 94 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cceehHHHHH
Confidence 345677778889999999999999999999999999999999999999999999999876544433 3455555544
Q ss_pred HHHHHHHHHH
Q 025047 236 ILLIIVAIIV 245 (258)
Q Consensus 236 ~~~iv~~ii~ 245 (258)
++++|+.+++
T Consensus 95 i~~~i~~~~~ 104 (109)
T 3hd7_B 95 ILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 17
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.24 E-value=0.0013 Score=47.00 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 225 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~ 225 (258)
+++-.+.+..|..++..|+.|-.+|+.-|..|..+||.++..|+.+...+..+.+.+.+..+..+.
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~ 79 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD 79 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 444556799999999999999999999999999999999999999999999999999887775543
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.13 E-value=0.0052 Score=41.87 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 164 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 164 ~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
.+.+..|..++..|+.|-.+|+.-|..|..+||.|+..++.+...+..+.+.+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999887754
No 19
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.03 E-value=0.0028 Score=43.13 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 161 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 161 ~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
++-.+.+..|..++..|+.|-.+|+.-|..|..+||.++..++.+...+..+...+.+
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999999999999999999999988887654
No 20
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.89 E-value=0.0094 Score=42.96 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 162 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 162 ~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
+-.+.+..|...+..|+.|-.+|+.-|..|..+||.|+..++.+...+..+++.+.+
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345668999999999999999999999999999999999999999999999887754
No 21
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.87 E-value=0.039 Score=40.02 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 225 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~ 225 (258)
.+.++...+.|+..+..+=-.-|-+.||.+|.+++--+.- ...|...-..|.+-+++
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L---~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL---QAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4667777788888877777777888899888876654432 22333344444444444
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.50 E-value=0.011 Score=42.62 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
-.+.+..|...+..|+.|-.+|+.-|..|.++||+|+..++.+...+..+++.+.+
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999887764
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.032 Score=37.78 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 164 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 164 ~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
...+..|...+.-|+.|-.+|+.-|..|.++||+|+..++.+...+..+++.|.+
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457889999999999999999999999999999999999999999998887753
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.00 E-value=0.2 Score=32.50 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 175 LELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 217 (258)
Q Consensus 175 ~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~ 217 (258)
.|-.++-..-...+..|||.|++|+.+++.+..++..|.+.|.
T Consensus 10 ~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 10 IESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3334444455667889999999999999999999999998874
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.73 E-value=0.88 Score=31.16 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=31.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 186 VLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 222 (258)
Q Consensus 186 ~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~ 222 (258)
.++..|||.|++||.|++.+..+...|.+.|..-..+
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3677899999999999999999999999888665544
No 26
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.42 E-value=1.4 Score=30.89 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 218 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~k 218 (258)
+.+..+-+.|-.++=......++.||+.|++++.++..+..++..|.+.|..
T Consensus 25 ~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 25 TRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 3444444555555666677788999999999999999999999999988853
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=92.73 E-value=0.022 Score=43.49 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025047 167 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVS 203 (258)
Q Consensus 167 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~ 203 (258)
+.++...+.|+..+..+=-.-|-+.||.||.+++--+
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe 71 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 71 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5555666666666666666667788888877765444
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=89.44 E-value=1.6 Score=30.81 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 182 LDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTAL 216 (258)
Q Consensus 182 ~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L 216 (258)
..-..++..||+.|++|+.+++....+...|.+.|
T Consensus 44 ~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 44 IRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455778999999999999999888887776554
No 29
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=83.57 E-value=8.1 Score=26.04 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 158 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 220 (258)
Q Consensus 158 ~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~ 220 (258)
.++..=...|.+|..-..+|..|..+=+.+|..=...++....||..+...+.+|...-.+++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 68 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356666777889999999999999999999999999999999999999999999987665543
No 30
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=76.87 E-value=17 Score=25.74 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 025047 158 AEIQERHDAVRD 169 (258)
Q Consensus 158 ~~i~~R~~~i~~ 169 (258)
+.+-+|.+.+..
T Consensus 26 ~kvL~RgekL~~ 37 (91)
T 3hd7_A 26 DKVLERDQKLSE 37 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHccchHHH
Confidence 333444444333
No 31
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=75.60 E-value=16 Score=24.84 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 157 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 221 (258)
Q Consensus 157 l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~ 221 (258)
..++.+=...|.+|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-.++++
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566667778888888999999999999999988899999999999999999999887665554
No 32
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=73.68 E-value=17 Score=24.08 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 171 ERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 217 (258)
Q Consensus 171 e~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~ 217 (258)
...+.|--++=.....-+..|+|.|.+...++..+..++..|.+-|.
T Consensus 15 ~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 15 HRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 33444445555566667789999999999999999999999988774
No 33
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=71.58 E-value=19 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025047 158 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 213 (258)
Q Consensus 158 ~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 213 (258)
.++..=.+.|.+|..-..+|..|..+=+.+|..=...++....||..+...+.+|.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666777777777777777777777777777777777777777776653
No 34
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=67.04 E-value=25 Score=23.38 Aligned_cols=57 Identities=12% Similarity=0.277 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 025047 158 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNT 214 (258)
Q Consensus 158 ~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~ 214 (258)
.++.+=.+.|.+|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777777777777777777777778888888777777764
No 35
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=66.04 E-value=4.4 Score=28.39 Aligned_cols=54 Identities=28% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 025047 193 DMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 193 e~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~ 246 (258)
.|-|.++..++...+.+..+.+-+..|.+--++-....+....++++++.++.+
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGf 66 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGY 66 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999988888776666555555444444444444443
No 36
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=64.51 E-value=33 Score=26.01 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCCchhHHHHHHHHHHHH
Q 025047 8 EPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPG-CGKGTGVDRSRTATTLGLK 86 (258)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~-~~~~s~~~rirk~q~~~L~ 86 (258)
+++++.+.....++..+...+ -+..+..+..++...+..++..|.+|++.....+..|. ++-+..+..-|+.....+.
T Consensus 40 l~~l~~l~~~w~~l~~~~~~~-s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r 118 (130)
T 4dnd_A 40 VNTARGLYQRWCELLQESAAV-GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMR 118 (130)
T ss_dssp HHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHH
Confidence 345555555555444433222 23566777777777777888888888776543322220 1112234455666666555
Q ss_pred HHHHHH
Q 025047 87 KKFKDK 92 (258)
Q Consensus 87 ~~f~~~ 92 (258)
..+.++
T Consensus 119 ~~I~~m 124 (130)
T 4dnd_A 119 EAVQEM 124 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 37
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=64.19 E-value=27 Score=24.22 Aligned_cols=62 Identities=11% Similarity=0.246 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 159 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 222 (258)
Q Consensus 159 ~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~ 222 (258)
-++.-++.|.+|..+...+.-..+-+..-|..+|.. .|.-|...|....+.....|.++.+.
T Consensus 14 SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 14 SIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 466677777777777777776666666667777654 58889999999999999999988753
No 38
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=63.95 E-value=28 Score=22.86 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025047 158 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 213 (258)
Q Consensus 158 ~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 213 (258)
.++..=.+.|.+|..-..+|..|..+=+.+|..=...+++...||..+...+.+|.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555566677777778888888888888888888888888888888888777664
No 39
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=59.03 E-value=41 Score=23.16 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 157 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTAL 216 (258)
Q Consensus 157 l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L 216 (258)
..++..=.+.|.+|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+.-
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446777777888888889999999999999999888999999999999999998887654
No 40
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=55.63 E-value=14 Score=27.76 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 025047 218 KAKKLQK 224 (258)
Q Consensus 218 kA~~~q~ 224 (258)
.|.+.++
T Consensus 83 ~A~kl~r 89 (119)
T 2kog_A 83 SAAKLKR 89 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 41
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=54.78 E-value=73 Score=26.05 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 025047 138 EQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVD 207 (258)
Q Consensus 138 ~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~ 207 (258)
+.+++ .+.+.++..+..+|.+-+.=|.+|..++..|..|.++-.+|..|+..=..+.+-|+.=+....+
T Consensus 96 e~YWk-~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~ 164 (209)
T 2wvr_A 96 SQYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLD 164 (209)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 34555 3444455555567777777777777777777776666666666665555555555444433333
No 42
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=52.07 E-value=49 Score=28.04 Aligned_cols=63 Identities=13% Similarity=0.266 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR 227 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~r 227 (258)
.+|.+=+..|..|..-..+|+.|..+=+.+|..=..-|+....||+.+...+.+|...=+++.
T Consensus 210 ~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~ 272 (279)
T 2xhe_B 210 NEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQAR 272 (279)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666789999999999999999998999888888888999999999999988887766554
No 43
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=49.17 E-value=15 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhccccCCC
Q 025047 238 LIIVAIIVVAVIKPWSSNK 256 (258)
Q Consensus 238 ~iv~~ii~~~i~~~~~~~~ 256 (258)
+++.+++++.++...++++
T Consensus 10 vi~si~LI~~VLlQ~~Kg~ 28 (77)
T 2akh_X 10 LIVAIGLVGLIMLQQGKGA 28 (77)
T ss_pred HHHHHHHHHHheeeCCCCC
Confidence 3333334444444443443
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.03 E-value=1.8e+02 Score=27.31 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=23.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025047 29 AIKKRMEKDVDEVGKISRFIKSKIEELDREN 59 (258)
Q Consensus 29 ~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~ 59 (258)
.|+.-|+..-.+++..+.+++..+.++.+..
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKns 80 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNN 80 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhc
Confidence 4666777777788888888888888885553
No 45
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.25 E-value=73 Score=22.24 Aligned_cols=51 Identities=16% Similarity=0.344 Sum_probs=39.4
Q ss_pred HHHHHHHHHcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 139 QIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDA 190 (258)
Q Consensus 139 ~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~ 190 (258)
.+++ .+.+.++.....+|.+-+.=|..|..++..+..|.++...+..|+..
T Consensus 28 ~YWk-~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 28 QYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 45555555566778888888999999999999999999999888754
No 46
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=44.46 E-value=12 Score=23.04 Aligned_cols=9 Identities=44% Similarity=1.143 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 025047 230 MCIAIIILL 238 (258)
Q Consensus 230 ~~~~~~~~~ 238 (258)
+|+++++++
T Consensus 35 fclilicll 43 (52)
T 1fjk_A 35 FCLILIFLL 43 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344333333
No 47
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=43.51 E-value=77 Score=21.71 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 211 (258)
.|.+||..+.-.-+...+|+..|..|...||....-+..-...+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777888888888888888888888888777665555443
No 48
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=42.52 E-value=84 Score=21.90 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 025047 138 EQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNI 198 (258)
Q Consensus 138 ~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~I 198 (258)
++++.. +.+.++.....+|.+-+.=|+.|..+...|..|.+.-.+|..|...=..|-+-|
T Consensus 19 e~YWk~-lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 19 SQYWKE-VAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp CTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344442 333344444456666666666666666666666666666655554433333333
No 49
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=42.15 E-value=44 Score=18.54 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025047 169 DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVS 203 (258)
Q Consensus 169 ~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~ 203 (258)
.||..+..|+.+.++| .+-+|+.|+.|.
T Consensus 3 rlee~~r~l~~ivq~l-------q~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKL-------QERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 3555666665555555 566777776654
No 50
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=40.83 E-value=10 Score=26.04 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 025047 197 NIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 231 (258)
Q Consensus 197 ~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~ 231 (258)
.++..++...+.+..+.+-+..|.+--++-....+
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~ia 38 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVA 38 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 44556666667777777777766655554444333
No 51
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=37.90 E-value=96 Score=21.24 Aligned_cols=57 Identities=9% Similarity=0.066 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 221 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~ 221 (258)
..+.+-...+.|=.++=.+...-+..|.|.|.+....+..+..++..+.+-|..-.+
T Consensus 19 ~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~r 75 (81)
T 2nps_C 19 RRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLR 75 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 334555555556666666667778899999999999999999999999988865443
No 52
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=36.54 E-value=1.7e+02 Score=23.83 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 213 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 213 (258)
+.+-...+..|...+.++.+++.+++..+.+|...++.|..++.....-++...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 195 (227)
T 1qu7_A 142 VESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA 195 (227)
T ss_dssp HHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577888899999999999999999999999999888877655544433
No 53
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=35.37 E-value=2.2e+02 Score=24.61 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025047 160 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 213 (258)
Q Consensus 160 i~~R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 213 (258)
+.+=...+..|...+.++.+.+.+++.-+.+|...++.|..++.....-++...
T Consensus 222 ~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 275 (341)
T 3zx6_A 222 VESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA 275 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788889999999999999999999999888887776655544443
No 54
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=35.23 E-value=6 Score=26.78 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 025047 198 IESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 246 (258)
Q Consensus 198 Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~ii~~ 246 (258)
++..++...+.+..+.+-+..|.+--++-....+....++++++.++..
T Consensus 4 ~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf 52 (68)
T 2wwb_B 4 VMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGF 52 (68)
T ss_dssp SSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888888776666555555444444444444443
No 55
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=34.51 E-value=8.3 Score=28.96 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHH
Q 025047 228 KWMCIAII 235 (258)
Q Consensus 228 k~~~~~~~ 235 (258)
.|++.+++
T Consensus 104 ~~~~~~i~ 111 (130)
T 3fym_A 104 EPIQLLVI 111 (130)
T ss_dssp --------
T ss_pred hHHHHHHH
Confidence 34333333
No 56
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=30.77 E-value=1.9e+02 Score=22.60 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025047 165 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDH 208 (258)
Q Consensus 165 ~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~ 208 (258)
-....|......++.+-..|-.|+..|.+.++.+|.+|.....-
T Consensus 54 Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~ 97 (159)
T 3p8c_F 54 YTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQT 97 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888889999999999999999999999999999875444
No 57
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.80 E-value=1.6e+02 Score=21.17 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q 025047 86 KKKFKDKMGEFQVLRENIH---QEYREVVER 113 (258)
Q Consensus 86 ~~~f~~~~~~f~~~Q~~~~---~~~k~~~~r 113 (258)
......+...|..+-..|+ ..||+++++
T Consensus 94 ~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 94 KTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544442 245555543
No 58
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.44 E-value=1.9e+02 Score=20.41 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025047 166 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 204 (258)
Q Consensus 166 ~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~ 204 (258)
.|..+...+.|+..+..+=-.-|-+.|+-||.+++--+.
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 466777777888887777777788899988888665444
No 59
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=29.43 E-value=17 Score=21.72 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=2.5
Q ss_pred hccccC
Q 025047 249 IKPWSS 254 (258)
Q Consensus 249 ~~~~~~ 254 (258)
+.-|++
T Consensus 29 i~~w~q 34 (39)
T 2l6w_A 29 IMLWQK 34 (39)
Confidence 334543
No 60
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.05 E-value=1.4e+02 Score=18.36 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 80 ATTLGLKKKFKDKMGEFQVLRENI 103 (258)
Q Consensus 80 ~q~~~L~~~f~~~~~~f~~~Q~~~ 103 (258)
+....|..+|..++.+|...|.+.
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788899999999999876544
No 61
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=23.02 E-value=1.3e+02 Score=17.91 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccC
Q 025047 228 KWMCIAIIILLIIVAIIVVAVIKPWSS 254 (258)
Q Consensus 228 k~~~~~~~~~~iv~~ii~~~i~~~~~~ 254 (258)
+.|.+..+..+.++.++.+++..++.+
T Consensus 9 PLWlvgtv~G~~vi~~~giFfyGsYsG 35 (40)
T 3arc_J 9 PLWIVATVAGMGVIVIVGLFFYGAYAG 35 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cEEeeeeehhhhhhheeeEEEeecccc
Confidence 567777777777777777767666654
No 62
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.86 E-value=1.9e+02 Score=19.67 Aligned_cols=24 Identities=13% Similarity=0.404 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025047 80 ATTLGLKKKFKDKMGEFQVLRENI 103 (258)
Q Consensus 80 ~q~~~L~~~f~~~~~~f~~~Q~~~ 103 (258)
+....|..+|..++.+|...|.+.
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888999999999999876544
No 63
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=20.03 E-value=76 Score=17.43 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 025047 231 CIAIIIL 237 (258)
Q Consensus 231 ~~~~~~~ 237 (258)
|++.++.
T Consensus 15 cLilICl 21 (30)
T 1yod_A 15 CLREICQ 21 (30)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
Done!