Query 025050
Match_columns 258
No_of_seqs 183 out of 464
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nee_A EIF-2-beta, probable tr 100.0 7.2E-56 2.5E-60 369.8 2.6 132 115-252 4-135 (138)
2 2d74_B Translation initiation 100.0 5.9E-55 2E-59 368.0 7.3 132 115-252 5-137 (148)
3 3cw2_K Translation initiation 100.0 1E-55 3.5E-60 369.2 -12.0 133 115-252 4-136 (139)
4 2e9h_A EIF-5, eukaryotic trans 100.0 4.3E-48 1.5E-52 328.8 11.4 123 126-252 10-138 (157)
5 2g2k_A EIF-5, eukaryotic trans 100.0 1.1E-46 3.7E-51 323.7 11.7 117 136-252 9-131 (170)
6 1k8b_A EIF-2-beta, probable tr 99.9 3.4E-23 1.2E-27 147.0 6.2 52 149-202 1-52 (52)
7 1k81_A EIF-2-beta, probable tr 99.4 6.5E-14 2.2E-18 92.2 2.9 34 220-253 1-34 (36)
8 1pft_A TFIIB, PFTFIIBN; N-term 87.0 0.36 1.2E-05 32.4 2.4 30 220-251 6-35 (50)
9 1qyp_A RNA polymerase II; tran 86.9 0.58 2E-05 32.3 3.5 33 219-251 15-54 (57)
10 1tfi_A Transcriptional elongat 86.6 0.68 2.3E-05 31.8 3.7 31 219-249 9-46 (50)
11 4h62_V Mediator of RNA polymer 84.5 0.52 1.8E-05 29.2 2.0 21 201-221 7-27 (31)
12 2ogh_A Eukaryotic translation 81.9 2.8 9.7E-05 32.9 5.9 57 155-216 37-97 (108)
13 1wii_A Hypothetical UPF0222 pr 81.9 1.1 3.6E-05 34.2 3.2 35 218-252 22-59 (85)
14 2fiy_A Protein FDHE homolog; F 81.5 0.81 2.8E-05 42.1 3.0 33 218-250 181-218 (309)
15 1pqv_S STP-alpha, transcriptio 79.8 1.1 3.8E-05 40.9 3.2 31 219-249 268-305 (309)
16 1dl6_A Transcription factor II 79.6 0.71 2.4E-05 32.5 1.5 28 220-249 12-39 (58)
17 2jrp_A Putative cytoplasmic pr 79.5 1 3.6E-05 34.1 2.5 33 220-257 3-35 (81)
18 4bbr_M Transcription initiatio 77.7 0.96 3.3E-05 41.8 2.2 31 219-249 21-51 (345)
19 2vut_I AREA, nitrogen regulato 76.9 0.49 1.7E-05 31.7 -0.0 29 221-249 3-31 (43)
20 2xzm_F EIF1; ribosome, transla 76.9 6.3 0.00021 30.6 6.3 56 154-214 29-88 (101)
21 2pk7_A Uncharacterized protein 76.8 0.86 2.9E-05 33.3 1.3 34 215-251 4-37 (69)
22 2jne_A Hypothetical protein YF 76.1 1.7 5.9E-05 34.2 2.9 35 218-257 31-65 (101)
23 1gnf_A Transcription factor GA 73.7 0.53 1.8E-05 32.1 -0.5 31 220-250 5-35 (46)
24 3k1f_M Transcription initiatio 72.8 1.6 5.5E-05 37.9 2.1 31 219-249 21-51 (197)
25 2jr6_A UPF0434 protein NMA0874 72.0 1.9 6.4E-05 31.4 2.0 32 217-251 6-37 (68)
26 2hf1_A Tetraacyldisaccharide-1 71.4 1.9 6.4E-05 31.4 1.9 32 217-251 6-37 (68)
27 3po3_S Transcription elongatio 70.9 1.4 4.8E-05 37.4 1.4 32 219-250 137-175 (178)
28 3h0g_I DNA-directed RNA polyme 69.6 2.8 9.7E-05 32.8 2.8 31 220-250 73-110 (113)
29 1twf_I B12.6, DNA-directed RNA 67.4 4.3 0.00015 32.2 3.5 31 220-250 73-110 (122)
30 2jny_A Uncharacterized BCR; st 66.7 1.6 5.5E-05 31.8 0.7 35 214-251 5-39 (67)
31 2kae_A GATA-type transcription 66.6 0.95 3.2E-05 33.5 -0.5 30 219-249 8-39 (71)
32 3dfx_A Trans-acting T-cell-spe 66.5 0.77 2.6E-05 33.2 -1.0 30 220-249 8-37 (63)
33 4gat_A Nitrogen regulatory pro 64.2 1.2 4.2E-05 32.4 -0.3 27 220-248 10-38 (66)
34 3k7a_M Transcription initiatio 63.9 1.6 5.3E-05 40.1 0.2 32 219-250 21-52 (345)
35 3a43_A HYPD, hydrogenase nicke 63.6 5 0.00017 32.5 3.2 20 219-238 107-126 (139)
36 3j20_Y 30S ribosomal protein S 63.4 3.9 0.00013 27.9 2.1 28 219-249 19-46 (50)
37 1d0q_A DNA primase; zinc-bindi 63.2 7.6 0.00026 29.5 4.0 31 220-250 38-68 (103)
38 1qxf_A GR2, 30S ribosomal prot 62.8 2 6.8E-05 31.5 0.6 29 219-249 7-35 (66)
39 2js4_A UPF0434 protein BB2007; 61.7 3.6 0.00012 30.0 1.8 32 217-251 6-37 (70)
40 1x0t_A Ribonuclease P protein 60.6 7.2 0.00025 30.9 3.6 35 220-254 66-108 (120)
41 1d1r_A Hypothetical 11.4 KD pr 59.4 2.4 8.3E-05 33.9 0.6 56 154-214 44-99 (116)
42 2if1_A EIF1, SUI1; translation 58.7 6.4 0.00022 31.9 3.0 58 152-214 51-113 (126)
43 2k3r_A Ribonuclease P protein 57.9 7.7 0.00026 30.9 3.3 34 220-253 61-102 (123)
44 1gh9_A 8.3 kDa protein (gene M 57.2 4.8 0.00016 29.6 1.8 27 220-251 5-31 (71)
45 1x3z_A Peptide: N-glycanase; h 56.5 9.3 0.00032 35.7 4.1 45 205-249 99-164 (335)
46 2jrp_A Putative cytoplasmic pr 56.0 4.3 0.00015 30.7 1.4 7 243-249 44-50 (81)
47 3j20_W 30S ribosomal protein S 56.0 3 0.0001 30.3 0.5 29 219-249 15-43 (63)
48 2e2z_A TIM15; protein import, 56.0 5.2 0.00018 31.5 1.9 30 220-249 14-47 (100)
49 2lo3_A SAGA-associated factor 55.6 3.5 0.00012 27.9 0.8 23 227-249 1-26 (44)
50 2lcq_A Putative toxin VAPC6; P 55.2 3 0.0001 34.0 0.4 44 208-258 107-153 (165)
51 1vk6_A NADH pyrophosphatase; 1 52.9 6.7 0.00023 34.7 2.4 37 210-249 98-134 (269)
52 2xzm_6 RPS27E; ribosome, trans 51.5 3.4 0.00012 31.4 0.2 29 219-249 32-60 (81)
53 3u5c_b RP61, YS20, 40S ribosom 48.2 4.9 0.00017 30.6 0.6 29 219-249 34-62 (82)
54 3h0g_I DNA-directed RNA polyme 46.2 7.2 0.00024 30.5 1.3 32 220-251 5-37 (113)
55 3iz6_X 40S ribosomal protein S 44.8 4.2 0.00014 31.2 -0.2 29 219-249 36-64 (86)
56 2kdx_A HYPA, hydrogenase/ureas 43.7 15 0.00053 28.4 2.9 16 219-234 89-105 (119)
57 1vq8_Z 50S ribosomal protein L 43.4 9.5 0.00033 28.7 1.6 28 220-250 28-55 (83)
58 4esj_A Type-2 restriction enzy 43.2 19 0.00064 32.5 3.7 52 201-252 15-68 (257)
59 3a43_A HYPD, hydrogenase nicke 42.8 11 0.00037 30.5 1.9 61 175-250 41-117 (139)
60 2kpi_A Uncharacterized protein 42.8 15 0.00052 25.5 2.4 31 216-251 7-39 (56)
61 2au3_A DNA primase; zinc ribbo 42.3 15 0.00052 34.1 3.2 29 220-250 35-65 (407)
62 3lsg_A Two-component response 42.3 24 0.00081 25.6 3.6 27 162-188 21-47 (103)
63 3j21_g 50S ribosomal protein L 42.1 4.2 0.00014 28.2 -0.6 28 215-249 10-37 (51)
64 2qkd_A Zinc finger protein ZPR 42.0 16 0.00056 34.7 3.3 32 219-250 220-259 (404)
65 3qt1_I DNA-directed RNA polyme 41.8 5.4 0.00019 32.4 0.0 31 220-250 93-130 (133)
66 2apo_B Ribosome biogenesis pro 40.9 10 0.00035 27.1 1.3 25 219-252 6-30 (60)
67 3mn2_A Probable ARAC family tr 40.5 24 0.00082 25.8 3.4 27 162-188 20-46 (108)
68 4hc9_A Trans-acting T-cell-spe 40.4 5.7 0.0002 31.5 -0.1 30 220-249 60-89 (115)
69 2k7r_A Primosomal protein DNAI 40.0 59 0.002 24.7 5.7 68 163-246 21-101 (106)
70 4hc9_A Trans-acting T-cell-spe 39.9 5.9 0.0002 31.4 -0.1 29 220-248 6-34 (115)
71 3ga8_A HTH-type transcriptiona 39.9 26 0.00089 25.1 3.5 30 221-250 4-46 (78)
72 2k9s_A Arabinose operon regula 38.5 28 0.00097 25.4 3.6 27 162-188 22-48 (107)
73 3oou_A LIN2118 protein; protei 37.7 29 0.001 25.4 3.6 27 162-188 23-49 (108)
74 1twf_L ABC10-alpha, DNA-direct 36.3 5.7 0.0002 29.0 -0.6 25 221-249 30-54 (70)
75 2kdx_A HYPA, hydrogenase/ureas 36.2 15 0.0005 28.6 1.7 55 176-250 44-100 (119)
76 3cc2_Z 50S ribosomal protein L 36.1 22 0.00076 28.5 2.7 78 162-250 10-88 (116)
77 2k2d_A Ring finger and CHY zin 35.8 11 0.00038 27.9 0.9 16 219-234 55-70 (79)
78 3oio_A Transcriptional regulat 35.8 31 0.001 25.5 3.4 27 162-188 25-51 (113)
79 1u8b_A ADA polyprotein; protei 34.6 32 0.0011 26.2 3.4 28 161-188 94-121 (133)
80 1bl0_A Protein (multiple antib 32.0 37 0.0013 25.7 3.4 46 119-188 10-55 (129)
81 2con_A RUH-035 protein, NIN on 31.0 17 0.00058 27.2 1.2 24 227-250 2-25 (79)
82 3irb_A Uncharacterized protein 30.4 14 0.00049 29.8 0.8 24 234-257 41-65 (145)
83 1twf_I B12.6, DNA-directed RNA 29.3 42 0.0014 26.3 3.3 32 220-251 5-37 (122)
84 3mhs_E SAGA-associated factor 28.5 14 0.00048 28.8 0.4 25 227-251 59-86 (96)
85 2j9u_B VPS36, vacuolar protein 28.4 17 0.00057 27.3 0.7 26 220-252 18-52 (76)
86 1l8d_A DNA double-strand break 28.3 27 0.00091 26.4 1.9 11 220-230 48-58 (112)
87 2aus_D NOP10, ribosome biogene 27.3 21 0.00071 25.5 1.1 22 220-252 6-29 (60)
88 3r8s_0 50S ribosomal protein L 27.3 24 0.00081 24.6 1.3 18 240-257 27-44 (56)
89 2dkt_A Ring finger and CHY zin 26.3 18 0.00062 29.9 0.7 35 215-258 54-88 (143)
90 3iz5_m 60S ribosomal protein L 26.1 25 0.00086 27.1 1.4 42 204-250 22-64 (92)
91 3h0g_L DNA-directed RNA polyme 24.9 23 0.00079 25.4 1.0 28 219-250 21-48 (63)
92 2k4x_A 30S ribosomal protein S 24.8 45 0.0015 23.0 2.4 29 219-250 18-46 (55)
93 2fiy_A Protein FDHE homolog; F 24.7 47 0.0016 30.3 3.2 37 219-255 222-268 (309)
94 1wee_A PHD finger family prote 24.6 39 0.0013 23.8 2.1 24 218-247 15-38 (72)
95 2mob_A Protein (methane monoox 24.4 2.9E+02 0.0099 22.6 8.4 66 130-202 61-127 (138)
96 1tc3_C Protein (TC3 transposas 23.1 64 0.0022 19.1 2.7 21 162-182 23-43 (51)
97 2gnr_A Conserved hypothetical 22.9 33 0.0011 27.8 1.6 23 235-257 42-65 (145)
98 1wem_A Death associated transc 22.4 38 0.0013 24.1 1.7 24 219-249 16-39 (76)
99 2iyb_E Testin, TESS, TES; LIM 22.2 57 0.002 21.8 2.6 29 221-249 4-41 (65)
100 3mkl_A HTH-type transcriptiona 21.0 77 0.0026 23.5 3.3 27 161-188 24-50 (120)
101 1vq8_1 50S ribosomal protein L 20.9 20 0.0007 25.4 -0.0 25 218-248 16-40 (57)
102 1nd9_A Translation initiation 20.2 86 0.0029 19.6 3.0 25 162-187 4-28 (49)
103 3nsj_A Perforin-1; pore formin 20.1 62 0.0021 31.5 3.2 22 205-226 336-357 (540)
104 1d5y_A ROB transcription facto 20.0 61 0.0021 27.3 2.8 27 162-188 21-47 (292)
No 1
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=100.00 E-value=7.2e-56 Score=369.77 Aligned_cols=132 Identities=33% Similarity=0.629 Sum_probs=126.2
Q ss_pred CccHHHHHHHHHHHHhhcCCCcccccceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 025050 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ 194 (258)
Q Consensus 115 ~~~YeeLL~R~~~~L~~~nP~~~~~~~R~~mp~pqV~reG~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~~ 194 (258)
+|+|++||+|||++| |+..++.+||+||+|+|+++| +||+|+||.|||++|||+|+||++||++||||+|+|| +
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG-~kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~ 77 (138)
T 1nee_A 4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-G 77 (138)
T ss_dssp CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-T
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEEC-CcEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-C
Confidence 688999999999999 454466789999999999999 5799999999999999999999999999999999999 8
Q ss_pred ceEEEEeecChHHHHHHHHHHHHhccccCCCCCCCceeEEcCceEEeeeccccCcccc
Q 025050 195 QRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 195 ~rliikGrf~~k~ie~~L~~YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~ 252 (258)
+||||+|+|++++||++|++||++||+|++|+||||.|++++|+++++|.||||+++.
T Consensus 78 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 78 GRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAKAPL 135 (138)
T ss_dssp TTEEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCS
T ss_pred CEEEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCCccc
Confidence 8999999999999999999999999999999999999999999999999999999975
No 2
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=100.00 E-value=5.9e-55 Score=367.97 Aligned_cols=132 Identities=39% Similarity=0.751 Sum_probs=127.6
Q ss_pred CccHHHHHHHHHHHHhhcCCCcc-cccceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecC
Q 025050 115 DYEYEELLGRVFNILRENNPELA-GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG 193 (258)
Q Consensus 115 ~~~YeeLL~R~~~~L~~~nP~~~-~~~~R~~mp~pqV~reG~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~ 193 (258)
.|+|++||+|||++| |+.+ ++.+||+||+|+|+++| +||+|+||.|||++|||+|+||++||++||||+|+||
T Consensus 5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eG-kKTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id- 78 (148)
T 2d74_B 5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEG-NKTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE- 78 (148)
T ss_dssp TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEET-TEEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-
T ss_pred cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEec-CeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence 478999999999999 8876 77899999999999999 7999999999999999999999999999999999999
Q ss_pred CceEEEEeecChHHHHHHHHHHHHhccccCCCCCCCceeEEcCceEEeeeccccCcccc
Q 025050 194 QQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 194 ~~rliikGrf~~k~ie~~L~~YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~ 252 (258)
++||||+|+|++++||++|++||++||+|++|+||||.|++++|+++++|.||||+++.
T Consensus 79 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 79 GRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAETPI 137 (148)
T ss_dssp TTEEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCC
T ss_pred CCEEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCCccc
Confidence 78999999999999999999999999999999999999999999999999999999875
No 3
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=100.00 E-value=1e-55 Score=369.20 Aligned_cols=133 Identities=30% Similarity=0.607 Sum_probs=120.8
Q ss_pred CccHHHHHHHHHHHHhhcCCCcccccceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 025050 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ 194 (258)
Q Consensus 115 ~~~YeeLL~R~~~~L~~~nP~~~~~~~R~~mp~pqV~reG~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~~ 194 (258)
+|+|++||+|||++|+ +..++.+||+||+|+|+++| +||+|+||.|||++|||+|+||++||++||||+|+||++
T Consensus 4 ~~~Y~~lL~R~~~~l~----~~~~~~~R~kmp~~~v~~eG-~kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~ 78 (139)
T 3cw2_K 4 EKEYVEMLDRLYSKLP----EKGRKEGTQSLPNMIILNIG-NTTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK 78 (139)
T ss_dssp SGGGHHHHTTTTTSST----TSSSCSSCCSCCCCCCCCCS-SSCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSSS
T ss_pred ccCHHHHHHHHHHHcc----cccCCccceecCCCeEEEEC-CeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECCC
Confidence 6899999999999995 44466789999999999999 579999999999999999999999999999999999988
Q ss_pred ceEEEEeecChHHHHHHHHHHHHhccccCCCCCCCceeEEcCceEEeeeccccCcccc
Q 025050 195 QRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 195 ~rliikGrf~~k~ie~~L~~YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~ 252 (258)
+||||+|+|++++||++|++||++||+|++|+||||.|++++|+++++|.||||+++.
T Consensus 79 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 79 GELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPV 136 (139)
T ss_dssp CCCTTTCSCCSCCSCSTTTTTSSCCSSCCSSSSSCCCSCSSCSTTTSSCCC-------
T ss_pred CeEEEEeeeCHHHHHHHHHHHHHHeeECCCCCCcCcEEEEeCCeEEEEecCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999875
No 4
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.3e-48 Score=328.84 Aligned_cols=123 Identities=24% Similarity=0.422 Sum_probs=115.5
Q ss_pred HHHHhhcCCCcccccceeecCCCeEEEeCc---eeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeec-CCceEEEEe
Q 025050 126 FNILRENNPELAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLD-GQQRLVVKG 201 (258)
Q Consensus 126 ~~~L~~~nP~~~~~~~R~~mp~pqV~reG~---kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid-~~~rliikG 201 (258)
+++++++||. .+||+||+|||+++|+ +||+|+||.|||++|||+|+||++||++||||+|+|| +++||||+|
T Consensus 10 ~nI~r~~~d~----~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G 85 (157)
T 2e9h_A 10 VNVNRSVSDQ----FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG 85 (157)
T ss_dssp EESSTTCCCS----CCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEB
T ss_pred EeccCCCCCc----ccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence 5677666554 4699999999999997 7999999999999999999999999999999999999 689999999
Q ss_pred ecChHHHHHHHHHHHHhccccCCCCCCCceeEE--cCceEEeeeccccCcccc
Q 025050 202 RFAPKNFEGILRRYVNEYVICLGCKSPDTILSK--ENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 202 rf~~k~ie~~L~~YI~eYVlC~~C~sPdT~L~k--e~rl~~l~C~aCGa~~~~ 252 (258)
+|++++||++|++||++||+|++|+||||.|++ ++|+++++|.||||+++.
T Consensus 86 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 86 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcc
Confidence 999999999999999999999999999999998 799999999999999875
No 5
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=323.68 Aligned_cols=117 Identities=24% Similarity=0.418 Sum_probs=111.9
Q ss_pred cccccceeecCCCeEEEeCc---eeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEeecChHHHHHH
Q 025050 136 LAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGRFAPKNFEGI 211 (258)
Q Consensus 136 ~~~~~~R~~mp~pqV~reG~---kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~-~~rliikGrf~~k~ie~~ 211 (258)
.....+||+||+|+|.+||+ +||+|+||.|||++|||+|+||++||++||||+|+||+ ++||||+|+|++++||++
T Consensus 9 ~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~ 88 (170)
T 2g2k_A 9 VMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDM 88 (170)
T ss_dssp CCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHH
T ss_pred CCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHH
Confidence 34556899999999999996 69999999999999999999999999999999999997 899999999999999999
Q ss_pred HHHHHHhccccCCCCCCCceeEE--cCceEEeeeccccCcccc
Q 025050 212 LRRYVNEYVICLGCKSPDTILSK--ENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 212 L~~YI~eYVlC~~C~sPdT~L~k--e~rl~~l~C~aCGa~~~~ 252 (258)
|++||++||+|++|+||||.|++ ++|+++++|.||||+++.
T Consensus 89 L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 89 LDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp HHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred HHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCcccc
Confidence 99999999999999999999999 799999999999999875
No 6
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.88 E-value=3.4e-23 Score=146.95 Aligned_cols=52 Identities=35% Similarity=0.705 Sum_probs=49.7
Q ss_pred eEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEee
Q 025050 149 QVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGR 202 (258)
Q Consensus 149 qV~reG~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~~~rliikGr 202 (258)
+|.++| +||+|+||.|||++|||+|+||++||++||||+|++| ++||||+|+
T Consensus 1 ~v~~eG-~kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~ 52 (52)
T 1k8b_A 1 EILIEG-NRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-GGRLILQRR 52 (52)
T ss_dssp CEEEET-TEEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred CcEEEc-CeEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-CCEEEEeCC
Confidence 589999 6799999999999999999999999999999999999 789999996
No 7
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=99.41 E-value=6.5e-14 Score=92.23 Aligned_cols=34 Identities=38% Similarity=0.632 Sum_probs=32.2
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCccccc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAHIQSY 253 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~~ 253 (258)
|+|++|+||||.|++++|+++++|+|||++++.-
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCccccc
Confidence 8999999999999999999999999999998753
No 8
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=87.00 E-value=0.36 Score=32.41 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=20.5
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCccc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~ 251 (258)
+.||.|++++ |+-+..--.+.|..||..-.
T Consensus 6 ~~CP~C~~~~--l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAE--LIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCC--EEEETTTTEEEESSSCCBCC
T ss_pred EeCcCCCCcc--eEEcCCCCeEECcccCCccc
Confidence 5799999954 54442222589999998543
No 9
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=86.91 E-value=0.58 Score=32.34 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=25.1
Q ss_pred ccccCCCCCCCceeEE-------cCceEEeeeccccCccc
Q 025050 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 219 YVlC~~C~sPdT~L~k-------e~rl~~l~C~aCGa~~~ 251 (258)
.|.||.|+..+..... +.-..|..|..||.+-.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 5899999997766543 24577999999998743
No 10
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=86.64 E-value=0.68 Score=31.78 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=25.2
Q ss_pred ccccCCCCCCCceeEE-------cCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~k-------e~rl~~l~C~aCGa~ 249 (258)
-+.||.|++.+..+.. +.-..|..|..||.+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 3789999999987764 345778999999986
No 11
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=84.47 E-value=0.52 Score=29.23 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=17.2
Q ss_pred eecChHHHHHHHHHHHHhccc
Q 025050 201 GRFAPKNFEGILRRYVNEYVI 221 (258)
Q Consensus 201 Grf~~k~ie~~L~~YI~eYVl 221 (258)
.||..+||+.+|++-|+.||.
T Consensus 7 trfdekqieelldncietfva 27 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 479999999999999999985
No 12
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=81.88 E-value=2.8 Score=32.88 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=46.5
Q ss_pred ceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC----ceEEEEeecChHHHHHHHHHHH
Q 025050 155 TKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ----QRLVVKGRFAPKNFEGILRRYV 216 (258)
Q Consensus 155 ~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~~----~rliikGrf~~k~ie~~L~~YI 216 (258)
+.-|+|.+|.. .-+++-+.+.|...+|+.|++-++ ..+.|+|.+.....+-++.+++
T Consensus 37 K~VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g~ 97 (108)
T 2ogh_A 37 KTLTTVQGVPE-----EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLG 97 (108)
T ss_dssp CCEEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCc-----chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcCC
Confidence 46788999962 448999999999999999999532 3899999999887777777654
No 13
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=81.86 E-value=1.1 Score=34.25 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=28.5
Q ss_pred hccccCCCCCCCceeEE---cCceEEeeeccccCcccc
Q 025050 218 EYVICLGCKSPDTILSK---ENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 218 eYVlC~~C~sPdT~L~k---e~rl~~l~C~aCGa~~~~ 252 (258)
.+-.||-|+..++.-++ ..++-.+.|..||.+.+.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 46689999999877665 457999999999987653
No 14
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=81.54 E-value=0.81 Score=42.09 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=24.2
Q ss_pred hccccCCCCCCC-ceeEE----cCceEEeeeccccCcc
Q 025050 218 EYVICLGCKSPD-TILSK----ENRLFFLRCEKVKAHI 250 (258)
Q Consensus 218 eYVlC~~C~sPd-T~L~k----e~rl~~l~C~aCGa~~ 250 (258)
..-.||.|+|+= ..+++ .++.-+++|.-||+.-
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 357899999975 44555 3677799999998753
No 15
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=79.76 E-value=1.1 Score=40.93 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=24.9
Q ss_pred ccccCCCCCCCceeEE-------cCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~k-------e~rl~~l~C~aCGa~ 249 (258)
-+.|+.|+..++.+.- +.-..|..|..||.+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 4689999999987753 345779999999986
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=79.60 E-value=0.71 Score=32.45 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=20.6
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
..||.|++.+ |+.+..-=-+.|..||-.
T Consensus 12 ~~Cp~C~~~~--lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCc--eeEeCCCCeEEeCCCCCE
Confidence 4799999866 665533336899999965
No 17
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.46 E-value=1 Score=34.13 Aligned_cols=33 Identities=24% Similarity=0.594 Sum_probs=21.2
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCccccccccc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAHIQSYYLCP 257 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~~~~~~ 257 (258)
++||.|.++ |..+++ +-.|.+||+..+.--+||
T Consensus 3 ~~CP~C~~~---l~~~~~--~~~C~~C~~~~~~~afCP 35 (81)
T 2jrp_A 3 ITCPVCHHA---LERNGD--TAHCETCAKDFSLQALCP 35 (81)
T ss_dssp CCCSSSCSC---CEECSS--EEECTTTCCEEEEEEECS
T ss_pred CCCCCCCCc---cccCCC--ceECccccccCCCcccCc
Confidence 578888776 445555 335777777666655665
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=77.68 E-value=0.96 Score=41.77 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.8
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
-+.||.|+++.|.|+-+-.-=.+.|..||-.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 4589999996677776543347899999964
No 19
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=76.87 E-value=0.49 Score=31.74 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=22.1
Q ss_pred ccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 221 ICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 221 lC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
.|..|+..+|-+-+.+.-=-.-|+|||-.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 69999999999988531112789999953
No 20
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=76.86 E-value=6.3 Score=30.63 Aligned_cols=56 Identities=7% Similarity=0.017 Sum_probs=43.7
Q ss_pred CceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeec-CC---ceEEEEeecChHHHHHHHHH
Q 025050 154 GTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLD-GQ---QRLVVKGRFAPKNFEGILRR 214 (258)
Q Consensus 154 G~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid-~~---~rliikGrf~~k~ie~~L~~ 214 (258)
|+.-|+|.+|. -.-++.-|++.|...+|+.||+- +. ..+.|+|-+.....+-++..
T Consensus 29 ~K~VT~V~Gl~-----~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 29 RKCFTTVEGIP-----PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp TEEEEEEECCC-----TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CccEEEEecCC-----CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 44678899995 34579999999999999999994 32 28999999988766655554
No 21
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=76.84 E-value=0.86 Score=33.33 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHhccccCCCCCCCceeEEcCceEEeeeccccCccc
Q 025050 215 YVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 215 YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~ 251 (258)
-+-+.+.||.|++|=+ +..... .|.|.+||...+
T Consensus 4 ~LLeiL~CP~ck~~L~-~~~~~~--~LiC~~cg~~YP 37 (69)
T 2pk7_A 4 KLLDILACPICKGPLK-LSADKT--ELISKGAGLAYP 37 (69)
T ss_dssp CGGGTCCCTTTCCCCE-ECTTSS--EEEETTTTEEEE
T ss_pred HHHhheeCCCCCCcCe-EeCCCC--EEEcCCCCcEec
Confidence 3456789999998632 222222 578999987644
No 22
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.12 E-value=1.7 Score=34.21 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=27.9
Q ss_pred hccccCCCCCCCceeEEcCceEEeeeccccCccccccccc
Q 025050 218 EYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQSYYLCP 257 (258)
Q Consensus 218 eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~~~~~~ 257 (258)
.-.+||.|..+ |...++. ..|.+|+.....-.+||
T Consensus 31 M~~~CP~Cq~e---L~~~g~~--~hC~~C~~~f~~~a~CP 65 (101)
T 2jne_A 31 MELHCPQCQHV---LDQDNGH--ARCRSCGEFIEMKALCP 65 (101)
T ss_dssp CCCBCSSSCSB---EEEETTE--EEETTTCCEEEEEEECT
T ss_pred ccccCccCCCc---ceecCCE--EECccccchhhccccCc
Confidence 44899999986 5566773 36999999988888888
No 23
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=73.68 E-value=0.53 Score=32.06 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=23.5
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCcc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAHI 250 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~ 250 (258)
..|..|+..+|-+-+.+.-=..-|+|||-..
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 4699999999999886422137899999643
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=72.81 E-value=1.6 Score=37.94 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=23.7
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
-+.||.|++..+.|+.+..-=-+.|..||..
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 4689999996677777543347899999975
No 25
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=71.97 E-value=1.9 Score=31.44 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=21.2
Q ss_pred HhccccCCCCCCCceeEEcCceEEeeeccccCccc
Q 025050 217 NEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 217 ~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~ 251 (258)
-+.+.||.|++|= .+..+.. .|.|.+||...+
T Consensus 6 L~iL~CP~ck~~L-~~~~~~~--~LiC~~cg~~YP 37 (68)
T 2jr6_A 6 LDILVCPVTKGRL-EYHQDKQ--ELWSRQAKLAYP 37 (68)
T ss_dssp SCCCBCSSSCCBC-EEETTTT--EEEETTTTEEEE
T ss_pred hhheECCCCCCcC-eEeCCCC--EEEcCCCCcEec
Confidence 3568999999862 2333333 578999987544
No 26
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=71.37 E-value=1.9 Score=31.44 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=21.0
Q ss_pred HhccccCCCCCCCceeEEcCceEEeeeccccCccc
Q 025050 217 NEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 217 ~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~ 251 (258)
-+.+.||.|++|= .+..... .|.|.+||...+
T Consensus 6 L~iL~CP~ck~~L-~~~~~~~--~LiC~~cg~~YP 37 (68)
T 2hf1_A 6 LEILVCPLCKGPL-VFDKSKD--ELICKGDRLAFP 37 (68)
T ss_dssp EEECBCTTTCCBC-EEETTTT--EEEETTTTEEEE
T ss_pred hhheECCCCCCcC-eEeCCCC--EEEcCCCCcEec
Confidence 3568899999862 2233333 478999986543
No 27
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=70.87 E-value=1.4 Score=37.35 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=25.0
Q ss_pred ccccCCCCCCCceeEE-------cCceEEeeeccccCcc
Q 025050 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKVKAHI 250 (258)
Q Consensus 219 YVlC~~C~sPdT~L~k-------e~rl~~l~C~aCGa~~ 250 (258)
-+.||.|+..+..+.- +.-..|..|..||.+.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 4799999999987643 2446688999999874
No 28
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.56 E-value=2.8 Score=32.81 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=25.0
Q ss_pred cccCCCCCCCceeEE-------cCceEEeeeccccCcc
Q 025050 220 VICLGCKSPDTILSK-------ENRLFFLRCEKVKAHI 250 (258)
Q Consensus 220 VlC~~C~sPdT~L~k-------e~rl~~l~C~aCGa~~ 250 (258)
+.||.|++.+..+.- +.-..|.+|..||.+.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 899999999977753 3456788999999864
No 29
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=67.35 E-value=4.3 Score=32.16 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=25.1
Q ss_pred cccCCCCCCCceeEE-------cCceEEeeeccccCcc
Q 025050 220 VICLGCKSPDTILSK-------ENRLFFLRCEKVKAHI 250 (258)
Q Consensus 220 VlC~~C~sPdT~L~k-------e~rl~~l~C~aCGa~~ 250 (258)
+.||.|+..+..+.- +.-..|-.|..||.+-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w 110 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF 110 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEE
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEe
Confidence 789999999987764 3457788999999863
No 30
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=66.68 E-value=1.6 Score=31.76 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHHhccccCCCCCCCceeEEcCceEEeeeccccCccc
Q 025050 214 RYVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 214 ~YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~ 251 (258)
..+-+...||.|++|= .+..+.+ .|.|.+||...+
T Consensus 5 ~~LLeiL~CP~ck~~L-~~~~~~g--~LvC~~c~~~YP 39 (67)
T 2jny_A 5 PQLLEVLACPKDKGPL-RYLESEQ--LLVNERLNLAYR 39 (67)
T ss_dssp GGGTCCCBCTTTCCBC-EEETTTT--EEEETTTTEEEE
T ss_pred HHHHHHhCCCCCCCcC-eEeCCCC--EEEcCCCCcccc
Confidence 3455678999999962 2333333 367999986543
No 31
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=66.55 E-value=0.95 Score=33.48 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=23.0
Q ss_pred ccccCCCCCCCceeEEc--CceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKE--NRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke--~rl~~l~C~aCGa~ 249 (258)
-..|..|+..+|-+-+. +.- -.-|+|||-.
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~-g~LCNACGl~ 39 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKE-GIQCNACFIY 39 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSS-CCCSSHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-CccchHHHHH
Confidence 36899999999999886 211 1789999943
No 32
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=66.52 E-value=0.77 Score=33.23 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.6
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
..|..|+..+|-+-+.+.-=-.-|+|||-.
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~ 37 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLY 37 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHH
Confidence 469999999999988542112689999943
No 33
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=64.18 E-value=1.2 Score=32.39 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=21.8
Q ss_pred cccCCCCCCCceeEEcC--ceEEeeeccccC
Q 025050 220 VICLGCKSPDTILSKEN--RLFFLRCEKVKA 248 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~--rl~~l~C~aCGa 248 (258)
..|..|+.-+|-+-+.+ +- .-|+|||-
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~--~LCNaCGl 38 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQ--PLCNACGL 38 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTE--EECHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCC--CccHHHHH
Confidence 57999999999998753 33 66999984
No 34
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=63.92 E-value=1.6 Score=40.08 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=23.4
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCcc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAHI 250 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~ 250 (258)
-..||.|++..+.++.+..-=.+.|..||..-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 46799999986666665333367999999754
No 35
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=63.58 E-value=5 Score=32.51 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=14.8
Q ss_pred ccccCCCCCCCceeEEcCce
Q 025050 219 YVICLGCKSPDTILSKENRL 238 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl 238 (258)
+..||.|+||+..++.-..+
T Consensus 107 ~~~CP~Cgs~~~~i~~G~el 126 (139)
T 3a43_A 107 FLACPKCGSHDFEVVKGRGV 126 (139)
T ss_dssp GCSCSSSSCCCEEEEESSCE
T ss_pred CCcCccccCCccEEecCCeE
Confidence 67899999998887664433
No 36
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.37 E-value=3.9 Score=27.93 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=18.6
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
+-.||.|+++-......+ -++|..||.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~---R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGD---RWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSS---EEECSSSCCE
T ss_pred cccCCCCCCceEEecCCC---eEECCCCCCE
Confidence 566999999642222233 4689999975
No 37
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=63.21 E-value=7.6 Score=29.53 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=17.9
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCcc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAHI 250 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~ 250 (258)
..||-|.--.-.+.....--.-+|-+||+.+
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~gG 68 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQIFHCFGCGAGG 68 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCCEE
T ss_pred EECCCCCCCCCcEEEEcCCCEEEECCCCCCC
Confidence 3788886333245543211245899999754
No 38
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=62.75 E-value=2 Score=31.52 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=23.6
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
.|.|+.|.+.-|.+..-.. ...|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~t--vV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPST--IVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCSS--CEECSSSCCE
T ss_pred EEECCCCCCceEEEecCce--EEEcccCCCE
Confidence 5999999999888876543 5789999974
No 39
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=61.68 E-value=3.6 Score=30.04 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=21.0
Q ss_pred HhccccCCCCCCCceeEEcCceEEeeeccccCccc
Q 025050 217 NEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 217 ~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~ 251 (258)
-+.+.||.|++|= .+..... .|.|.+||...+
T Consensus 6 L~iL~CP~ck~~L-~~~~~~~--~LiC~~cg~~YP 37 (70)
T 2js4_A 6 LDILVCPVCKGRL-EFQRAQA--ELVCNADRLAFP 37 (70)
T ss_dssp CCCCBCTTTCCBE-EEETTTT--EEEETTTTEEEE
T ss_pred hhheECCCCCCcC-EEeCCCC--EEEcCCCCceec
Confidence 3568999999952 2222233 578999986543
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=60.57 E-value=7.2 Score=30.90 Aligned_cols=35 Identities=14% Similarity=0.400 Sum_probs=23.7
Q ss_pred cccCCCCC---CC-ce-eEEcCc---eEEeeeccccCcccccc
Q 025050 220 VICLGCKS---PD-TI-LSKENR---LFFLRCEKVKAHIQSYY 254 (258)
Q Consensus 220 VlC~~C~s---Pd-T~-L~ke~r---l~~l~C~aCGa~~~~~~ 254 (258)
-+|..|++ |- |. +...++ .+...|..||...--.|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~ 108 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPY 108 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEEC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEcc
Confidence 37999999 53 22 222333 67999999998765443
No 41
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=59.40 E-value=2.4 Score=33.94 Aligned_cols=56 Identities=9% Similarity=0.031 Sum_probs=43.2
Q ss_pred CceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHHH
Q 025050 154 GTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRR 214 (258)
Q Consensus 154 G~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~~~rliikGrf~~k~ie~~L~~ 214 (258)
|+.-|+|.+|..- .-+++-|++.|...+|+.|++-+ +.+.|+|.+.....+=++..
T Consensus 44 GK~VT~V~Gl~~~----~~dlk~laK~LKkk~acgGtVk~-~~IeiQGD~r~~i~~~L~~~ 99 (116)
T 1d1r_A 44 GKGVCLITGVDLD----DAELTKLAAELKKKCGCGGAVKD-GVIEIQGDKRDLLKSLLEAK 99 (116)
T ss_dssp SCCCEEEECCCSC----HHHHHHHHHHHTTSSSSCCBCCS-SCEEECSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCcCc----hhhHHHHHHHHHHHhcCCcEEcC-CEEEEeCcHHHHHHHHHHHc
Confidence 3467899999631 12467789999999999999974 59999999988766666555
No 42
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=58.66 E-value=6.4 Score=31.89 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=45.3
Q ss_pred EeCc-eeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecC----CceEEEEeecChHHHHHHHHH
Q 025050 152 REGT-KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG----QQRLVVKGRFAPKNFEGILRR 214 (258)
Q Consensus 152 reG~-kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~----~~rliikGrf~~k~ie~~L~~ 214 (258)
|-|+ .-|+|.+|.. .-+++-|.+.|.+.+|+.|++-+ ...+.|+|-+.....+-++.+
T Consensus 51 R~grK~VT~V~GL~~-----~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 51 RNGRKTLTTVQGIAD-----DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp SSSSCCBCEEBSCCT-----TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred ecCCccEEEEeCCCC-----chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 3443 5788999973 44799999999999999999953 248999999988766666555
No 43
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=57.87 E-value=7.7 Score=30.95 Aligned_cols=34 Identities=12% Similarity=0.374 Sum_probs=22.8
Q ss_pred cccCCCCC---CC-ce-eEEcCc---eEEeeeccccCccccc
Q 025050 220 VICLGCKS---PD-TI-LSKENR---LFFLRCEKVKAHIQSY 253 (258)
Q Consensus 220 VlC~~C~s---Pd-T~-L~ke~r---l~~l~C~aCGa~~~~~ 253 (258)
-+|..|++ |- |. +...++ .+...|..||...--.
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 37999999 53 22 222333 6799999999876433
No 44
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=57.17 E-value=4.8 Score=29.58 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=19.4
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCccc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~ 251 (258)
|-|+ |+.. .+++. +--..+|. ||++.+
T Consensus 5 v~C~-C~~~--~~~~~-~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRA--LYSRE-GAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCC--EEEET-TCSEEEET-TTEEEE
T ss_pred EECC-CCCE--EEEcC-CCcEEECC-CCCeee
Confidence 6799 9987 34443 44478998 998764
No 45
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=56.51 E-value=9.3 Score=35.71 Aligned_cols=45 Identities=11% Similarity=0.306 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHhc------cccCCCCCCC--ceeE--------E-----cCceEEeeeccccCc
Q 025050 205 PKNFEGILRRYVNEY------VICLGCKSPD--TILS--------K-----ENRLFFLRCEKVKAH 249 (258)
Q Consensus 205 ~k~ie~~L~~YI~eY------VlC~~C~sPd--T~L~--------k-----e~rl~~l~C~aCGa~ 249 (258)
.-.|..+|+=|=.+| -.|+.|+++. |... . -+++..-+|..||+.
T Consensus 99 d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~ 164 (335)
T 1x3z_A 99 DYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNI 164 (335)
T ss_dssp HHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCE
T ss_pred HHHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcc
Confidence 345677777776653 3699999986 4442 0 136888999999984
No 46
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.05 E-value=4.3 Score=30.72 Aligned_cols=7 Identities=14% Similarity=-0.064 Sum_probs=6.3
Q ss_pred eccccCc
Q 025050 243 CEKVKAH 249 (258)
Q Consensus 243 C~aCGa~ 249 (258)
|.||||.
T Consensus 44 lkACGA~ 50 (81)
T 2jrp_A 44 LKACGAV 50 (81)
T ss_dssp EEETTEE
T ss_pred HHhcCCc
Confidence 8999988
No 47
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.02 E-value=3 Score=30.28 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=22.8
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
-|.|+.|.+.-|.+..-.. ...|..||..
T Consensus 15 ~VkCp~C~~~q~VFSha~t--~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPAT--KVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCSS--CEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCCe--EEEccCcCCE
Confidence 4999999998888766533 6789999864
No 48
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=56.00 E-value=5.2 Score=31.47 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=26.0
Q ss_pred cccCCCCCCCceeEE----cCceEEeeeccccCc
Q 025050 220 VICLGCKSPDTILSK----ENRLFFLRCEKVKAH 249 (258)
Q Consensus 220 VlC~~C~sPdT~L~k----e~rl~~l~C~aCGa~ 249 (258)
-+|..|....+..+- ++++.+++|..|...
T Consensus 14 FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 14 FTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EEccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 489999998888886 479999999999875
No 49
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=55.62 E-value=3.5 Score=27.88 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.7
Q ss_pred CCCceeEE---cCceEEeeeccccCc
Q 025050 227 SPDTILSK---ENRLFFLRCEKVKAH 249 (258)
Q Consensus 227 sPdT~L~k---e~rl~~l~C~aCGa~ 249 (258)
+|+|.|+. +..+-|-.|++||..
T Consensus 1 n~n~~ii~~ple~~~~YRvC~~CgkP 26 (44)
T 2lo3_A 1 NPNAQLIEDPLDKPIQYRVCEKCGKP 26 (44)
T ss_dssp CCSSCCCCCCCCCCCCEEECTTTCCE
T ss_pred CCccchhhcccCccccchhhcccCCc
Confidence 47788876 456778999999964
No 50
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=55.19 E-value=3 Score=34.00 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccccCCCCCCCceeEEcCceEEeeeccccCcccc---cccccC
Q 025050 208 FEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQS---YYLCPI 258 (258)
Q Consensus 208 ie~~L~~YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~---~~~~~~ 258 (258)
++++.+.+ =| .+.+.. .++++-+.|-.+|.+||..... ...||.
T Consensus 107 l~~vA~~~---Gv---~v~~~~-~~i~~~~~~~y~C~~Cg~~~~~~~~~~~Cp~ 153 (165)
T 2lcq_A 107 VQNIASLL---GL---RFRTLK-RGIKKVIKWRYVCIGCGRKFSTLPPGGVCPD 153 (165)
T ss_dssp HHHHHHHT---TC---CEECCS-CCCSSCCCCCEEESSSCCEESSCCGGGBCTT
T ss_pred HHHHHHHC---CC---eEEchh-hhccccccEEEECCCCCCcccCCCCCCcCCC
Confidence 55555544 12 333555 6677889999999999988875 336884
No 51
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=52.86 E-value=6.7 Score=34.71 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHHHHHHhccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 210 GILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 210 ~~L~~YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
..|..|-..+--|+.|++|-.. .++ -+...|.+||..
T Consensus 98 ~~l~~w~~~~~fC~~CG~~~~~--~~~-~~~~~C~~C~~~ 134 (269)
T 1vk6_A 98 VQLAEFYRSHKYCGYCGHEMYP--SKT-EWAMLCSHCRER 134 (269)
T ss_dssp HHHHHHHHTTSBCTTTCCBEEE--CSS-SSCEEESSSSCE
T ss_pred HHHHhhhhcCCccccCCCcCcc--CCC-ceeeeCCCCCCE
Confidence 4567788889999999998543 233 357799999974
No 52
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=51.46 E-value=3.4 Score=31.36 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=22.9
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
.|.|+.|.+.-|.+..-. ..+.|..||..
T Consensus 32 ~VkCp~C~n~q~VFShA~--t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQ--STIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEETTCS--SCEECSSSCCE
T ss_pred EeECCCCCCeeEEEecCc--cEEEccCCCCE
Confidence 599999999888776543 36789999874
No 53
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=48.16 E-value=4.9 Score=30.57 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=23.0
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
-|.|+.|.+.-|.+..-.- .+.|..||..
T Consensus 34 ~VkCp~C~~~q~VFSha~t--~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQT--AVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEEESBCSS--CCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCe--EEEccccCCE
Confidence 4999999999888876533 5789999864
No 54
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.22 E-value=7.2 Score=30.47 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=21.0
Q ss_pred cccCCCCCCCceeEE-cCceEEeeeccccCccc
Q 025050 220 VICLGCKSPDTILSK-ENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 220 VlC~~C~sPdT~L~k-e~rl~~l~C~aCGa~~~ 251 (258)
--||.|+|.=..-.- .++...+.|..||....
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 359999998222111 13566789999998643
No 55
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.84 E-value=4.2 Score=31.21 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=22.4
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
-|.|+.|.+.-|.+..-. ..+.|..||..
T Consensus 36 ~VkCp~C~~~~~VFShA~--t~V~C~~Cgtv 64 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQ--TVVVCPGCQTV 64 (86)
T ss_dssp EEECTTTCCEEEEETTCS--SCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCC--cEEEccCCCCE
Confidence 399999999887776543 36789999864
No 56
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=43.69 E-value=15 Score=28.44 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=11.1
Q ss_pred cc-ccCCCCCCCceeEE
Q 025050 219 YV-ICLGCKSPDTILSK 234 (258)
Q Consensus 219 YV-lC~~C~sPdT~L~k 234 (258)
+. .||.|+||.+.++.
T Consensus 89 ~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 89 DYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp TTCCCSSSSSCCCEEEE
T ss_pred CCCcCccccCCCcEEec
Confidence 45 67777777777655
No 57
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=43.36 E-value=9.5 Score=28.68 Aligned_cols=28 Identities=11% Similarity=0.322 Sum_probs=19.2
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCcc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAHI 250 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~ 250 (258)
-.||.|+.+ ...-.... .++|..||...
T Consensus 28 y~Cp~CG~~-~v~r~atG--iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 28 HACPNCGED-RVDRQGTG--IWQCSYCDYKF 55 (83)
T ss_dssp EECSSSCCE-EEEEEETT--EEEETTTCCEE
T ss_pred CcCCCCCCc-ceeccCCC--eEECCCCCCEe
Confidence 479999973 22222344 67999999874
No 58
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=43.18 E-value=19 Score=32.51 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=36.2
Q ss_pred eecChHHHHHHH-HHHHHhccccCCCCCC-CceeEEcCceEEeeeccccCcccc
Q 025050 201 GRFAPKNFEGIL-RRYVNEYVICLGCKSP-DTILSKENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 201 Grf~~k~ie~~L-~~YI~eYVlC~~C~sP-dT~L~ke~rl~~l~C~aCGa~~~~ 252 (258)
|-.+..|+-.|| ..++.+...||.|++. =+.+.-..++--..|..|+....+
T Consensus 15 ~YkS~SQ~aRVLTE~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyEL 68 (257)
T 4esj_A 15 TYKSNSQKARILTEDWVYRQSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFEL 68 (257)
T ss_dssp HTTTCTTHHHHHHHHHHHHHCCCTTTCCSSCEEC----CCCEEECTTTCCEEEE
T ss_pred hccChhheehhhhHHHHHHCCcCCCCCChhhhhccCCCcccccccCCcchhhee
Confidence 345566666666 5789999999999994 456655667777899999876543
No 59
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=42.85 E-value=11 Score=30.49 Aligned_cols=61 Identities=16% Similarity=0.371 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHHHHHHhccccCCCCCCCce------eEEcCceE---------
Q 025050 175 DHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTI------LSKENRLF--------- 239 (258)
Q Consensus 175 ehv~kfl~~ELGt~gsid~~~rliikGrf~~k~ie~~L~~YI~eYVlC~~C~sPdT~------L~ke~rl~--------- 239 (258)
...++|.+..+ +.|++-.+-+|.|.-. .-...|..|+..=+. |.-..+-.
T Consensus 41 ~e~l~faf~~~-~~gt~~e~A~L~i~~~--------------p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~ 105 (139)
T 3a43_A 41 EDIVKFAMEQL-FAGTIAEGAEIEFVEE--------------EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVH 105 (139)
T ss_dssp HHHHHHHHHHH-HTTSTTTTCEEEEEEE--------------CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCG
T ss_pred HHHHHHHHHHH-HcCCcccCCEEEEEec--------------CCcEECCCCCCEEecccccccccccccccccccccccc
Confidence 34556666666 5566654558888543 235789999764221 00001112
Q ss_pred -EeeeccccCcc
Q 025050 240 -FLRCEKVKAHI 250 (258)
Q Consensus 240 -~l~C~aCGa~~ 250 (258)
+..|..||+..
T Consensus 106 ~~~~CP~Cgs~~ 117 (139)
T 3a43_A 106 AFLACPKCGSHD 117 (139)
T ss_dssp GGCSCSSSSCCC
T ss_pred cCCcCccccCCc
Confidence 68899999875
No 60
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=42.78 E-value=15 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=21.6
Q ss_pred HHhccccCCCCCCCceeEEcCceEEeeec--cccCccc
Q 025050 216 VNEYVICLGCKSPDTILSKENRLFFLRCE--KVKAHIQ 251 (258)
Q Consensus 216 I~eYVlC~~C~sPdT~L~ke~rl~~l~C~--aCGa~~~ 251 (258)
+-+...||.|++| |.-+. -.|.|. +||...+
T Consensus 7 lL~iL~CP~c~~~---L~~~~--~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 7 LLEILACPACHAP---LEERD--AELICTGQDCGLAYP 39 (56)
T ss_dssp CTTSCCCSSSCSC---EEEET--TEEEECSSSCCCEEE
T ss_pred HHhheeCCCCCCc---ceecC--CEEEcCCcCCCcEEe
Confidence 4467899999996 44333 357899 8986543
No 61
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=42.29 E-value=15 Score=34.06 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=19.0
Q ss_pred cccCCCCCCCceeEE--cCceEEeeeccccCcc
Q 025050 220 VICLGCKSPDTILSK--ENRLFFLRCEKVKAHI 250 (258)
Q Consensus 220 VlC~~C~sPdT~L~k--e~rl~~l~C~aCGa~~ 250 (258)
.+||-|.--.-.+.. +++ +-+|-+||+.+
T Consensus 35 ~~CPfh~ektpSf~V~~~k~--~~~CFgCg~gG 65 (407)
T 2au3_A 35 TNCPFHPDDTPSFYVSPSKQ--IFKCFGCGVGG 65 (407)
T ss_dssp ECCSSSCCSSCCEEEETTTT--EEEETTTCCEE
T ss_pred eeCcCCCCCCCeEEEECCCC--EEEECCCCCCC
Confidence 389999643334554 334 56899999754
No 62
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=42.28 E-value=24 Score=25.60 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=25.4
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
++.+||..++-++.||.+.|..++|++
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 579999999999999999999999985
No 63
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.06 E-value=4.2 Score=28.24 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=19.8
Q ss_pred HHHhccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 215 YVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 215 YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
+....-+|+.|++. +..-.-+|..||+.
T Consensus 10 r~~~k~iCpkC~a~-------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 10 RIFKKYVCLRCGAT-------NPWGAKKCRKCGYK 37 (51)
T ss_dssp HSSSEEECTTTCCE-------ECTTCSSCSSSSSC
T ss_pred HHhCCccCCCCCCc-------CCCCceecCCCCCc
Confidence 34456689999986 22335679999987
No 64
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=41.96 E-value=16 Score=34.75 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=22.7
Q ss_pred ccccCCCCCCC-ceeEEc-----Cc--eEEeeeccccCcc
Q 025050 219 YVICLGCKSPD-TILSKE-----NR--LFFLRCEKVKAHI 250 (258)
Q Consensus 219 YVlC~~C~sPd-T~L~ke-----~r--l~~l~C~aCGa~~ 250 (258)
-..|+.|+.+- |.+..- +. +....|..||.+.
T Consensus 220 ~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 220 NTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred cccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 36899999874 544432 22 5578999999875
No 65
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=41.78 E-value=5.4 Score=32.37 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=0.0
Q ss_pred cccCCCCCCCceeEE-------cCceEEeeeccccCcc
Q 025050 220 VICLGCKSPDTILSK-------ENRLFFLRCEKVKAHI 250 (258)
Q Consensus 220 VlC~~C~sPdT~L~k-------e~rl~~l~C~aCGa~~ 250 (258)
+.|+.|+..+..+.. +.-..|.+|..||.+.
T Consensus 93 ~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w 130 (133)
T 3qt1_I 93 RECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRW 130 (133)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEe
Confidence 799999999876642 3456788999999764
No 66
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=40.89 E-value=10 Score=27.08 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=16.0
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCcccc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~ 252 (258)
-+.|+.|+..-. .-.|..||+...+
T Consensus 6 mr~C~~CgvYTL---------k~~CP~CG~~T~~ 30 (60)
T 2apo_B 6 MKKCPKCGLYTL---------KEICPKCGEKTVI 30 (60)
T ss_dssp CEECTTTCCEES---------SSBCSSSCSBCBC
T ss_pred ceeCCCCCCEec---------cccCcCCCCcCCC
Confidence 357888943211 2349999988765
No 67
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.45 E-value=24 Score=25.77 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=25.4
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
++.+||..++-++.||.+.|...+|++
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~~~G~s 46 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQRSRGYS 46 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 479999999999999999999999985
No 68
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=40.40 E-value=5.7 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.5
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
..|..|+..+|.+-+.+.-=..-|+|||-.
T Consensus 60 ~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~ 89 (115)
T 4hc9_A 60 TSCANCQTTTTTLWRRNANGDPVCNACGLY 89 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHH
T ss_pred ccCCCcCCCCcceeEECCCCCCcchHHHHH
Confidence 689999999999987531113569999943
No 69
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=39.98 E-value=59 Score=24.66 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=44.9
Q ss_pred hHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHH---HHHHHHHHhccccCCCC---C-CC------
Q 025050 163 FMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFE---GILRRYVNEYVICLGCK---S-PD------ 229 (258)
Q Consensus 163 f~eI~k~L~R~pehv~kfl~~ELGt~gsid~~~rliikGrf~~k~ie---~~L~~YI~eYVlC~~C~---s-Pd------ 229 (258)
+.++.+.+--+|+ |..||..-= ...+...|+ ..|..||.+.-.|..|. . |.
T Consensus 21 ~~~~~~~vl~dP~-V~~Fl~~h~---------------~~l~~~~I~~s~~kL~ey~~e~~~c~~~~gl~~C~~~~kGy~ 84 (106)
T 2k7r_A 21 LEQMKEKVMKDQD-VQAFLKENE---------------EVIDQKMIEKSLNKLYEYIEQSKNCSYCSEDENCNNLLEGYH 84 (106)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHST---------------TTCCHHHHHHTHHHHHHHHHSCSSCTTTSCCTTSCCSSTTEE
T ss_pred HHHHHHHHHcCHH-HHHHHHHCh---------------hhCCHHHHHhhHHHHHHHHHHHHhhccCcccccCCCcCCCcc
Confidence 4567788888888 777876531 112334444 47889999999999998 5 55
Q ss_pred ceeEEcCceEEeeeccc
Q 025050 230 TILSKENRLFFLRCEKV 246 (258)
Q Consensus 230 T~L~ke~rl~~l~C~aC 246 (258)
+.|+..++.+.+.=..|
T Consensus 85 p~L~~~~g~i~v~Y~~c 101 (106)
T 2k7r_A 85 PKLVVNGRSIDIEYYEC 101 (106)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred cEEEecCCEEEEEEecC
Confidence 67777665544433333
No 70
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=39.95 E-value=5.9 Score=31.41 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=22.0
Q ss_pred cccCCCCCCCceeEEcCceEEeeeccccC
Q 025050 220 VICLGCKSPDTILSKENRLFFLRCEKVKA 248 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~C~aCGa 248 (258)
-.|..|+..+|-+-+.+.--..-|+|||-
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhh
Confidence 46999999999998743211468999994
No 71
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=39.92 E-value=26 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=19.0
Q ss_pred ccCCCCCCCce-------eEEcCc------eEEeeeccccCcc
Q 025050 221 ICLGCKSPDTI-------LSKENR------LFFLRCEKVKAHI 250 (258)
Q Consensus 221 lC~~C~sPdT~-------L~ke~r------l~~l~C~aCGa~~ 250 (258)
.||.|++..+. +..++. +-...|..||..-
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEE
Confidence 79999986442 222332 3456799999753
No 72
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=38.52 E-value=28 Score=25.40 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=25.5
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
++.+||+.++-++.|+.+.|..++|++
T Consensus 22 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 48 (107)
T 2k9s_A 22 DIASVAQHVCLSPSRLSHLFRQQLGIS 48 (107)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCcC
Confidence 589999999999999999999999986
No 73
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=37.72 E-value=29 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=25.6
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
++.+||..++-++.||.+.|..++|++
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 589999999999999999999999985
No 74
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=36.27 E-value=5.7 Score=29.04 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=17.4
Q ss_pred ccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 221 ICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 221 lC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
+|+.|+..-... ... -++|..||++
T Consensus 30 ~C~~CG~~~e~~--~~d--~irCp~CG~R 54 (70)
T 1twf_L 30 ICAECSSKLSLS--RTD--AVRCKDCGHR 54 (70)
T ss_dssp ECSSSCCEECCC--TTS--TTCCSSSCCC
T ss_pred ECCCCCCcceeC--CCC--CccCCCCCce
Confidence 699999864433 222 3589999985
No 75
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=36.19 E-value=15 Score=28.55 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCcee-ecCCceEEEEeecChHHHHHHHHHHHHhccccCCCCCCCceeEEcCceEEe-eeccccCcc
Q 025050 176 HVMTFLLAELGTSGS-LDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFL-RCEKVKAHI 250 (258)
Q Consensus 176 hv~kfl~~ELGt~gs-id~~~rliikGrf~~k~ie~~L~~YI~eYVlC~~C~sPdT~L~ke~rl~~l-~C~aCGa~~ 250 (258)
..++|.+..+ +.|+ +=.+-+|.|.-. .--..|..|+..=+. + . ... .|..||+..
T Consensus 44 e~l~f~f~~~-~~gt~~~e~a~L~i~~~--------------p~~~~C~~CG~~~e~---~-~-~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 44 SLFVSAFETF-REESLVCKDAILDIVDE--------------KVELECKDCSHVFKP---N-A-LDYGVCEKCHSKN 100 (119)
T ss_dssp HHHHHHHHHH-GGGCTTTSSCCEEEEEE--------------CCEEECSSSSCEECS---C-C-STTCCCSSSSSCC
T ss_pred HHHHHHHHHH-HhCChhhcCcEEEEEec--------------cceEEcCCCCCEEeC---C-C-CCCCcCccccCCC
Confidence 3445555555 6677 654558888632 225789999864322 1 2 245 899999874
No 76
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=36.09 E-value=22 Score=28.52 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=32.9
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHHHHHHhccccCCCCCCCceeEEc-CceEE
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE-NRLFF 240 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~~~rliikGrf~~k~ie~~L~~YI~eYVlC~~C~sPdT~L~ke-~rl~~ 240 (258)
|+.-+-..|+++.....+- -.-.|..|.+- -|+ |+.-.+.+..+...=- .-..||-|+. +.+.+. .++|
T Consensus 10 ~~~~~~~~~~~~~~~Makr-tKkVGi~GkyG--~RY---GaslRK~vkkiE~~q~-akytCPfCGk--~~vKR~avGIW- 79 (116)
T 3cc2_Z 10 NLEGLMWPLGGQQTTMASK-SGKTGSSGRFG--ARY---GRVSRRRVAEIESEMN-EDHACPNCGE--DRVDRQGTGIW- 79 (116)
T ss_dssp -------------------------CGGGGT--TCS---CHHHHHHHHHHHHHHH-SCEECSSSCC--EEEEEEETTEE-
T ss_pred chhhhhhhhhhhHHHHHhc-cCccccccccc--ccc---chHHHHHHHHHHHHhc-cCCcCCCCCC--ceeEecCceeE-
Confidence 5555556666664322211 11245555553 233 5555666666622222 3357999997 456553 5665
Q ss_pred eeeccccCcc
Q 025050 241 LRCEKVKAHI 250 (258)
Q Consensus 241 l~C~aCGa~~ 250 (258)
+|..||...
T Consensus 80 -~C~~Cgk~f 88 (116)
T 3cc2_Z 80 -QCSYCDYKF 88 (116)
T ss_dssp -EETTTCCEE
T ss_pred -ECCCCCCEE
Confidence 899999874
No 77
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=35.81 E-value=11 Score=27.95 Aligned_cols=16 Identities=25% Similarity=0.303 Sum_probs=13.7
Q ss_pred ccccCCCCCCCceeEE
Q 025050 219 YVICLGCKSPDTILSK 234 (258)
Q Consensus 219 YVlC~~C~sPdT~L~k 234 (258)
|..|+.|+|.+|.++.
T Consensus 55 g~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 55 GMKCKICESYNTAQAG 70 (79)
T ss_dssp CCCCTTTSCCCEEESC
T ss_pred cccCcCCCCcCeEecC
Confidence 4589999999999764
No 78
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=35.80 E-value=31 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=25.5
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
++.+||..++-++.||.+.|..++|++
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 25 STDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 579999999999999999999999985
No 79
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=34.56 E-value=32 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=26.0
Q ss_pred EehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 161 ~Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
.++.+||..++-+|.|+.+.|..++|.+
T Consensus 94 ~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 4589999999999999999999999985
No 80
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=31.98 E-value=37 Score=25.75 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCCCcccccceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 119 EELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 119 eeLL~R~~~~L~~~nP~~~~~~~R~~mp~pqV~reG~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
..++.++...|..+ +. +. .++.+||+.++-++.||.+.|..++|++
T Consensus 10 ~~~i~~~~~~i~~~-~~-----------------~~------~sl~~lA~~~~~S~~~l~r~fk~~~G~s 55 (129)
T 1bl0_A 10 AITIHSILDWIEDN-LE-----------------SP------LSLEKVSERSGYSKWHLQRMFKKETGHS 55 (129)
T ss_dssp HHHHHHHHHHHHTT-TT-----------------SC------CCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHc-cC-----------------CC------CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 57888888888532 11 01 3589999999999999999999999985
No 81
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=30.96 E-value=17 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=15.2
Q ss_pred CCCceeEEcCceEEeeeccccCcc
Q 025050 227 SPDTILSKENRLFFLRCEKVKAHI 250 (258)
Q Consensus 227 sPdT~L~ke~rl~~l~C~aCGa~~ 250 (258)
|+|=..++.=|.|.|+|.||-...
T Consensus 2 s~~G~~Ir~~k~~iLrC~aCf~~t 25 (79)
T 2con_A 2 SSGSSGVREARSYILRCHGCFKTT 25 (79)
T ss_dssp CCCCCCCCCCCCEEEECSSSCCEE
T ss_pred CCCceEeeeeeeeeeEecccceEC
Confidence 344445556677788888886543
No 82
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=30.40 E-value=14 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=16.4
Q ss_pred EcCceEEeeeccccCccc-cccccc
Q 025050 234 KENRLFFLRCEKVKAHIQ-SYYLCP 257 (258)
Q Consensus 234 ke~rl~~l~C~aCGa~~~-~~~~~~ 257 (258)
+++||+..+|.+||+... --..||
T Consensus 41 ~~grL~~~rC~~CG~~~~PPr~~Cp 65 (145)
T 3irb_A 41 KQNKIIGSKCSKCGRIFVPARSYCE 65 (145)
T ss_dssp HTTCCEEEECTTTCCEEESCCSEET
T ss_pred HcCeEEEEEeCCCCcEEcCchhhCc
Confidence 467899999999987643 223454
No 83
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=29.30 E-value=42 Score=26.31 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=22.3
Q ss_pred cccCCCCCCCceeE-EcCceEEeeeccccCccc
Q 025050 220 VICLGCKSPDTILS-KENRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 220 VlC~~C~sPdT~L~-ke~rl~~l~C~aCGa~~~ 251 (258)
.-||.|++.=..-. +.++...+.|..||....
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 46999998643222 225667899999998654
No 84
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=28.48 E-value=14 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=14.6
Q ss_pred CCCceeEEc---CceEEeeeccccCccc
Q 025050 227 SPDTILSKE---NRLFFLRCEKVKAHIQ 251 (258)
Q Consensus 227 sPdT~L~ke---~rl~~l~C~aCGa~~~ 251 (258)
+|+|.|+.. ..+-|-.|++||..--
T Consensus 59 n~nt~ii~~~Ld~~~~YRvCn~CGkPI~ 86 (96)
T 3mhs_E 59 NPNAQLIEDPLDKPIQYRVCEKCGKPLA 86 (96)
T ss_dssp CTTCCCCSSTTSSSCCCEEETTTCCEEC
T ss_pred CCcchhhcccCCCcccchhhhccCCcee
Confidence 455665542 3455777777776543
No 85
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=28.38 E-value=17 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=19.4
Q ss_pred cccCCCC---------CCCceeEEcCceEEeeeccccCcccc
Q 025050 220 VICLGCK---------SPDTILSKENRLFFLRCEKVKAHIQS 252 (258)
Q Consensus 220 VlC~~C~---------sPdT~L~ke~rl~~l~C~aCGa~~~~ 252 (258)
-.|+.|. -|+| .-.-.|.+||.....
T Consensus 18 WVCpICsfsN~v~s~fdp~~-------~~lPpC~aCGIkP~~ 52 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDT-------LPTPICINCGVPADY 52 (76)
T ss_dssp EECTTTCCEEEESSCCCTTC-------SSCCBCTTTCCBCCH
T ss_pred eECccccccCcCccccCCCC-------CCCCcccccCccCCH
Confidence 4699998 4444 557889999988764
No 86
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.25 E-value=27 Score=26.36 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=8.6
Q ss_pred cccCCCCCCCc
Q 025050 220 VICLGCKSPDT 230 (258)
Q Consensus 220 VlC~~C~sPdT 230 (258)
-.||.|++|-+
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 36999999844
No 87
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.33 E-value=21 Score=25.53 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=14.5
Q ss_pred cccCCCCCCCceeEEcCceEEee--eccccCcccc
Q 025050 220 VICLGCKSPDTILSKENRLFFLR--CEKVKAHIQS 252 (258)
Q Consensus 220 VlC~~C~sPdT~L~ke~rl~~l~--C~aCGa~~~~ 252 (258)
..|+.|+ +|.|+ |..||....+
T Consensus 6 r~C~~Cg-----------~YTLk~~CP~CG~~t~~ 29 (60)
T 2aus_D 6 RKCPKCG-----------RYTLKETCPVCGEKTKV 29 (60)
T ss_dssp EECTTTC-----------CEESSSBCTTTCSBCEE
T ss_pred eECCCCC-----------CEEccccCcCCCCccCC
Confidence 5688883 33333 8888887654
No 88
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=27.30 E-value=24 Score=24.58 Aligned_cols=18 Identities=0% Similarity=-0.206 Sum_probs=12.9
Q ss_pred EeeeccccCccccccccc
Q 025050 240 FLRCEKVKAHIQSYYLCP 257 (258)
Q Consensus 240 ~l~C~aCGa~~~~~~~~~ 257 (258)
...|..||.......+||
T Consensus 27 l~~c~~cGe~~l~H~vc~ 44 (56)
T 3r8s_0 27 LSVDKTSGEKHLRHHITA 44 (56)
T ss_dssp EEECTTTCCEEETTBCCT
T ss_pred eeECCCCCCeecccEECC
Confidence 567777777777777776
No 89
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=26.34 E-value=18 Score=29.91 Aligned_cols=35 Identities=26% Similarity=0.647 Sum_probs=23.2
Q ss_pred HHHhccccCCCCCCCceeEEcCceEEeeeccccCcccccccccC
Q 025050 215 YVNEYVICLGCKSPDTILSKENRLFFLRCEKVKAHIQSYYLCPI 258 (258)
Q Consensus 215 YI~eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~~~~~~~~~ 258 (258)
+...-|+|..|+..-|. ...|..||+..-.|| |+|
T Consensus 54 ~~~~~vlCg~C~~~q~~--------~~~C~~Cg~~f~~Y~-C~~ 88 (143)
T 2dkt_A 54 FKVKEVQCINCEKLQHA--------QQTCEDCSTLFGEYY-CSI 88 (143)
T ss_dssp SSCCCEEESSSCCEECS--------CSBCSSSCCBSCSEE-CSS
T ss_pred hccceeeecccCccccc--------cCcCCCCCccceeeE-ece
Confidence 33446888888765543 137888988877776 543
No 90
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.12 E-value=25 Score=27.11 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHHhccccCCCCCCCceeEEc-CceEEeeeccccCcc
Q 025050 204 APKNFEGILRRYVNEYVICLGCKSPDTILSKE-NRLFFLRCEKVKAHI 250 (258)
Q Consensus 204 ~~k~ie~~L~~YI~eYVlC~~C~sPdT~L~ke-~rl~~l~C~aCGa~~ 250 (258)
-.+++..+-..=-..| .||.|+.. .+.+. .+|| +|..||...
T Consensus 22 lRK~vkkie~~q~~ky-~CpfCgk~--~vkR~a~GIW--~C~~Cg~~~ 64 (92)
T 3iz5_m 22 LRKQIKKMEVSQHSKY-FCEFCGKF--AVKRKAVGIW--GCKDCGKVK 64 (92)
T ss_dssp HHHHHHHHHHHHHSCB-CCTTTCSS--CBEEEETTEE--ECSSSCCEE
T ss_pred HHHHHHHHHHHHhccc-cCcccCCC--eeEecCcceE--EcCCCCCEE
Confidence 3445555544444455 79999987 35543 4654 799998753
No 91
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.95 E-value=23 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.543 Sum_probs=19.9
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCcc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAHI 250 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~ 250 (258)
.-+|..|+.... |. ..--++|.-||++-
T Consensus 21 ~Y~C~~Cg~~~~-l~---~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNT-IQ---AKEVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCC-CC---SSSCCCCSSSCCCC
T ss_pred EEECCCCCCeee-cC---CCCceECCCCCcEE
Confidence 357999987765 22 12368999999875
No 92
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=24.80 E-value=45 Score=22.95 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=18.8
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCcc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAHI 250 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~~ 250 (258)
-..||.|++-- .+.... -.+.|..||.+-
T Consensus 18 ~~fCPkCG~~~-~ma~~~--dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGV-FLAEHA--DRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTC-CCEECS--SEEECTTTCCCE
T ss_pred cccCcCCCCce-eEeccC--CEEECCCCCCEE
Confidence 35799999843 233221 257899999873
No 93
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.73 E-value=47 Score=30.31 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=23.5
Q ss_pred ccccCCCCCCCc-eeE-Ec--------CceEEeeeccccCccccccc
Q 025050 219 YVICLGCKSPDT-ILS-KE--------NRLFFLRCEKVKAHIQSYYL 255 (258)
Q Consensus 219 YVlC~~C~sPdT-~L~-ke--------~rl~~l~C~aCGa~~~~~~~ 255 (258)
-+.|+.|++.+- .+. .+ ..+-.-.|..||+-.+.+|.
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~ 268 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYL 268 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEET
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhh
Confidence 367888888642 222 12 34678889999876665553
No 94
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.63 E-value=39 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=16.3
Q ss_pred hccccCCCCCCCceeEEcCceEEeeecccc
Q 025050 218 EYVICLGCKSPDTILSKENRLFFLRCEKVK 247 (258)
Q Consensus 218 eYVlC~~C~sPdT~L~ke~rl~~l~C~aCG 247 (258)
+-+.| .|+.|+ +...+++.|..|.
T Consensus 15 ~~~~C-~C~~~~-----~~g~~mI~Cd~C~ 38 (72)
T 1wee_A 15 WKVDC-KCGTKD-----DDGERMLACDGCG 38 (72)
T ss_dssp SEECC-TTCCCS-----CCSSCEEECSSSC
T ss_pred cceEe-eCCCcc-----CCCCcEEECCCCC
Confidence 34788 499985 2234578888885
No 95
>2mob_A Protein (methane monooxygenase regulatory protein B); oxidoreductase, methane oxidation; NMR {Methylosinus trichosporium} SCOP: d.137.1.1
Probab=24.43 E-value=2.9e+02 Score=22.56 Aligned_cols=66 Identities=9% Similarity=0.144 Sum_probs=47.0
Q ss_pred hhcCCCcccccceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEee
Q 025050 130 RENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGR 202 (258)
Q Consensus 130 ~~~nP~~~~~~~R~~mp~pqV~reG~kKTvi~Nf~eI~k~L~R~pehv~kfl~~ELGt~gsid~-~~rliikGr 202 (258)
.+.||+.. ..=.|.-|++++ -..+..+..+|.+.|.|+=. +..|...=..+.|.++. +++++|.-.
T Consensus 61 ~~DNP~~~-----V~d~pa~vRIda-~G~L~i~retIeE~LGR~fd-~~eleVnmsS~~GRi~~~DD~f~l~se 127 (138)
T 2mob_A 61 KAKNPSIV-----VEDKAGFWWIKA-DGAIEIDAAEAGELLGKPFS-VYDLLINVSSTVGRAYTLGTKFTITSE 127 (138)
T ss_dssp HHTSSCCE-----EEECSSCEEEEE-SSEEEEECHHHHHHTCSTHH-HHHHHHHGGGCSSCEEEETTEEEEESC
T ss_pred cccCCCeE-----EEecCCEEEEec-CCeEEEEHHHHHHHhCCCCc-HHHeehhheeeeeeEEEeCCEEEEEec
Confidence 67899742 111344566666 45688999999999999754 47777777788999974 568887543
No 96
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.13 E-value=64 Score=19.06 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=19.0
Q ss_pred ehHHHHHHhCCChHHHHHHHH
Q 025050 162 NFMDLCKTMHRQPDHVMTFLL 182 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~ 182 (258)
...+||+.|+.++..|.+|+.
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHh
Confidence 578999999999999999885
No 97
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=22.94 E-value=33 Score=27.84 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=14.8
Q ss_pred cCceEEeeeccccCccc-cccccc
Q 025050 235 ENRLFFLRCEKVKAHIQ-SYYLCP 257 (258)
Q Consensus 235 e~rl~~l~C~aCGa~~~-~~~~~~ 257 (258)
+++|...+|.+||+... --..||
T Consensus 42 ~g~L~~~rC~~CG~~~fPPr~~Cp 65 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIFVPARSYCE 65 (145)
T ss_dssp TTCCEEEECTTTCCEEESCCSEET
T ss_pred CCEEEEEEECCCCcEEeCCCCCCC
Confidence 56788888888887532 233454
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.36 E-value=38 Score=24.05 Aligned_cols=24 Identities=25% Similarity=0.790 Sum_probs=17.3
Q ss_pred ccccCCCCCCCceeEEcCceEEeeeccccCc
Q 025050 219 YVICLGCKSPDTILSKENRLFFLRCEKVKAH 249 (258)
Q Consensus 219 YVlC~~C~sPdT~L~ke~rl~~l~C~aCGa~ 249 (258)
-+.| .|+.|+. + -+++.|..|...
T Consensus 16 ~~~C-~C~~~~~-----~-~~MI~Cd~C~~W 39 (76)
T 1wem_A 16 ALYC-ICRQPHN-----N-RFMICCDRCEEW 39 (76)
T ss_dssp CCCS-TTCCCCC-----S-SCEEECSSSCCE
T ss_pred CCEE-ECCCccC-----C-CCEEEeCCCCCc
Confidence 3678 6999874 2 358889999744
No 99
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.24 E-value=57 Score=21.85 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=17.4
Q ss_pred ccCCCCCC----CceeEEcCceEE-----eeeccccCc
Q 025050 221 ICLGCKSP----DTILSKENRLFF-----LRCEKVKAH 249 (258)
Q Consensus 221 lC~~C~sP----dT~L~ke~rl~~-----l~C~aCGa~ 249 (258)
.|..|+.| +..|.-.++.|- .+|..|+..
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~ 41 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKC 41 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCB
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCc
Confidence 57778765 234444567766 566666544
No 100
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.05 E-value=77 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=23.9
Q ss_pred EehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 161 ~Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
.++.+||..++-.+.||.+.|... |++
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~-G~s 50 (120)
T 3mkl_A 24 WTLARIASELLMSPSLLKKKLREE-ETS 50 (120)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHT-TCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHc-CCC
Confidence 358999999999999999999886 874
No 101
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=20.94 E-value=20 Score=25.43 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=18.6
Q ss_pred hccccCCCCCCCceeEEcCceEEeeeccccC
Q 025050 218 EYVICLGCKSPDTILSKENRLFFLRCEKVKA 248 (258)
Q Consensus 218 eYVlC~~C~sPdT~L~ke~rl~~l~C~aCGa 248 (258)
..++|.-|++.--.+.+ ..|.+||.
T Consensus 16 tH~~CrRCG~~syH~qK------~~Ca~CGy 40 (57)
T 1vq8_1 16 THTKCRRCGEKSYHTKK------KVCSSCGF 40 (57)
T ss_dssp CEEECTTTCSEEEETTT------TEETTTCT
T ss_pred ccccccccCChhhhccc------cccccccC
Confidence 45899999987555543 36999997
No 102
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.16 E-value=86 Score=19.61 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=22.0
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcC
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGT 187 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt 187 (258)
++.++|+.|+.++..|+.+|. ++|.
T Consensus 4 rv~~lAkel~~~~k~l~~~l~-~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFA-DAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHH-HHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHH-HcCC
Confidence 467999999999999999985 6887
No 103
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=20.07 E-value=62 Score=31.53 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHhccccCCCC
Q 025050 205 PKNFEGILRRYVNEYVICLGCK 226 (258)
Q Consensus 205 ~k~ie~~L~~YI~eYVlC~~C~ 226 (258)
...|+..|..||.+|-.|..|.
T Consensus 336 r~nLk~Ai~~Yl~e~~~c~~C~ 357 (540)
T 3nsj_A 336 REALRQAISHYIMSRARWQNCS 357 (540)
T ss_dssp HHHHHHHHHHHHHHTCBCCCTT
T ss_pred HHHHHHHHHHHHHhcCchhhhc
Confidence 4789999999999999997775
No 104
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=20.01 E-value=61 Score=27.30 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=24.9
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 025050 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (258)
Q Consensus 162 Nf~eI~k~L~R~pehv~kfl~~ELGt~ 188 (258)
++.+||+.++-++.||.+.|..++|.+
T Consensus 21 ~~~~la~~~~~s~~~l~r~f~~~~g~s 47 (292)
T 1d5y_A 21 SLDNVAAKAGYSKWHLQRMFKDVTGHA 47 (292)
T ss_dssp CCHHHHTTTSSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 588999999999999999999999974
Done!