Query 025051
Match_columns 258
No_of_seqs 142 out of 626
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_B Nuclear mRNA export pro 100.0 2.9E-66 1E-70 485.4 17.9 249 1-254 150-442 (455)
2 3t5x_A PCI domain-containing p 100.0 3.9E-60 1.3E-64 402.2 21.5 196 53-254 6-202 (203)
3 4b4t_S RPN3, 26S proteasome re 100.0 4.7E-42 1.6E-46 323.5 15.5 211 16-242 229-445 (523)
4 3txn_A 26S proteasome regulato 99.8 3.8E-19 1.3E-23 163.9 21.6 212 14-246 135-363 (394)
5 4b4t_O 26S proteasome regulato 99.7 3.6E-17 1.2E-21 151.0 16.8 217 15-247 124-355 (393)
6 4b4t_P 26S proteasome regulato 99.6 1.1E-15 3.8E-20 143.2 13.5 216 15-245 174-405 (445)
7 4b4t_R RPN7, 26S proteasome re 99.5 1.7E-12 6E-17 120.8 20.3 209 18-246 168-394 (429)
8 4b4t_Q 26S proteasome regulato 99.5 1.8E-12 6.1E-17 117.5 16.9 214 14-244 171-401 (434)
9 4b0z_A RPN12, 26S proteasome r 98.8 7.1E-08 2.4E-12 82.5 12.0 183 24-222 13-214 (229)
10 3chm_A COP9 signalosome comple 98.7 2.7E-08 9.1E-13 81.2 6.5 94 129-245 61-157 (169)
11 1ufm_A COP9 complex subunit 4; 98.4 7.8E-07 2.7E-11 64.2 6.8 52 192-248 28-79 (84)
12 4ga2_A E3 SUMO-protein ligase 94.6 0.18 6E-06 38.5 8.5 63 23-95 36-99 (150)
13 3ma5_A Tetratricopeptide repea 94.5 0.17 5.8E-06 35.7 7.7 66 22-96 11-76 (100)
14 4gco_A Protein STI-1; structur 93.2 0.33 1.1E-05 35.9 7.6 30 63-92 49-78 (126)
15 2vyi_A SGTA protein; chaperone 93.1 0.94 3.2E-05 31.7 9.7 67 19-94 13-79 (131)
16 3k9i_A BH0479 protein; putativ 93.1 0.3 1E-05 35.1 7.0 70 17-95 26-95 (117)
17 3gyz_A Chaperone protein IPGC; 93.0 0.54 1.8E-05 36.4 8.8 64 23-95 41-104 (151)
18 2xev_A YBGF; tetratricopeptide 93.0 0.42 1.4E-05 34.3 7.6 29 64-92 79-107 (129)
19 2kc7_A BFR218_protein; tetratr 92.8 0.76 2.6E-05 31.5 8.5 64 24-96 6-70 (99)
20 3rkv_A Putative peptidylprolyl 92.7 0.47 1.6E-05 36.0 7.9 67 19-95 64-131 (162)
21 2vgx_A Chaperone SYCD; alterna 92.6 0.7 2.4E-05 35.1 8.8 65 22-95 25-89 (148)
22 2kat_A Uncharacterized protein 92.6 0.52 1.8E-05 33.5 7.6 67 20-95 21-87 (115)
23 2lni_A Stress-induced-phosphop 92.6 0.7 2.4E-05 32.8 8.4 63 23-94 21-83 (133)
24 2l6j_A TPR repeat-containing p 92.4 1.1 3.8E-05 30.8 9.1 64 22-94 8-71 (111)
25 3sz7_A HSC70 cochaperone (SGT) 92.2 0.75 2.6E-05 34.9 8.6 30 64-93 82-111 (164)
26 2xcb_A PCRH, regulatory protei 92.1 0.68 2.3E-05 34.4 8.1 64 23-95 23-86 (142)
27 2xev_A YBGF; tetratricopeptide 92.0 0.51 1.7E-05 33.8 7.1 66 23-94 7-72 (129)
28 1na3_A Designed protein CTPR2; 91.9 1.3 4.6E-05 29.2 8.8 65 21-94 12-76 (91)
29 4gco_A Protein STI-1; structur 91.6 0.84 2.9E-05 33.6 8.0 29 64-92 84-112 (126)
30 2kck_A TPR repeat; tetratricop 91.2 1.1 3.7E-05 30.6 7.8 62 23-93 11-72 (112)
31 1hh8_A P67PHOX, NCF-2, neutrop 91.2 1.5 5.1E-05 34.3 9.5 81 21-102 74-162 (213)
32 2kck_A TPR repeat; tetratricop 91.1 0.73 2.5E-05 31.5 6.9 66 22-94 44-110 (112)
33 2xcb_A PCRH, regulatory protei 91.1 1.6 5.5E-05 32.3 9.2 34 61-94 18-51 (142)
34 2dba_A Smooth muscle cell asso 91.0 0.78 2.7E-05 33.3 7.2 69 20-94 30-98 (148)
35 3q49_B STIP1 homology and U bo 90.6 0.43 1.5E-05 34.6 5.4 64 22-94 13-76 (137)
36 2vgx_A Chaperone SYCD; alterna 90.3 2 6.8E-05 32.4 9.2 32 63-94 23-54 (148)
37 3q49_B STIP1 homology and U bo 90.2 1.9 6.5E-05 30.9 8.8 36 60-95 8-43 (137)
38 1elw_A TPR1-domain of HOP; HOP 90.2 0.97 3.3E-05 31.1 6.8 64 22-94 8-71 (118)
39 1na0_A Designed protein CTPR3; 90.2 2.2 7.4E-05 29.5 8.8 64 22-94 13-76 (125)
40 2fbn_A 70 kDa peptidylprolyl i 90.1 1.6 5.3E-05 34.2 8.7 67 19-94 89-155 (198)
41 1elw_A TPR1-domain of HOP; HOP 90.1 2.2 7.5E-05 29.1 8.7 31 63-93 6-36 (118)
42 3upv_A Heat shock protein STI1 90.0 0.92 3.1E-05 32.6 6.8 32 63-94 40-71 (126)
43 2lni_A Stress-induced-phosphop 90.0 2.1 7.1E-05 30.2 8.7 36 59-94 14-49 (133)
44 3gyz_A Chaperone protein IPGC; 90.0 2.1 7.3E-05 32.8 9.2 30 64-93 107-136 (151)
45 4gcn_A Protein STI-1; structur 89.8 1.1 3.8E-05 32.9 7.1 63 23-95 13-76 (127)
46 3sz7_A HSC70 cochaperone (SGT) 89.7 2 6.7E-05 32.5 8.8 65 21-94 14-78 (164)
47 3ro3_A PINS homolog, G-protein 89.7 1.4 4.7E-05 31.9 7.7 69 20-93 11-81 (164)
48 2fo7_A Synthetic consensus TPR 89.6 1.2 4.2E-05 31.1 7.1 65 21-94 38-102 (136)
49 3vtx_A MAMA; tetratricopeptide 89.6 0.73 2.5E-05 35.4 6.2 29 65-93 111-139 (184)
50 1hxi_A PEX5, peroxisome target 89.3 2.1 7.1E-05 31.1 8.3 64 23-95 22-85 (121)
51 2vyi_A SGTA protein; chaperone 89.1 4.1 0.00014 28.2 9.7 65 21-94 49-113 (131)
52 1qqe_A Vesicular transport pro 89.0 2.5 8.4E-05 35.6 9.7 107 18-153 158-264 (292)
53 3hym_B Cell division cycle pro 88.9 2.4 8.1E-05 35.1 9.4 75 20-95 195-270 (330)
54 3upv_A Heat shock protein STI1 88.9 2.7 9.1E-05 30.0 8.6 29 65-93 8-36 (126)
55 1a17_A Serine/threonine protei 88.8 1.5 5E-05 32.5 7.3 68 19-95 14-81 (166)
56 3as5_A MAMA; tetratricopeptide 88.7 2.4 8.2E-05 31.5 8.6 67 20-95 44-110 (186)
57 3qky_A Outer membrane assembly 88.5 1.5 5.2E-05 35.8 7.8 66 23-94 20-85 (261)
58 3urz_A Uncharacterized protein 88.4 2.3 8E-05 33.7 8.7 65 21-95 57-122 (208)
59 1elr_A TPR2A-domain of HOP; HO 88.4 1.4 4.7E-05 30.9 6.6 71 20-92 40-110 (131)
60 2fo7_A Synthetic consensus TPR 88.0 3.3 0.00011 28.7 8.5 64 22-94 5-68 (136)
61 1na0_A Designed protein CTPR3; 87.8 4 0.00014 28.0 8.8 34 61-94 9-42 (125)
62 1elr_A TPR2A-domain of HOP; HO 87.6 4.9 0.00017 27.8 9.3 65 21-94 7-71 (131)
63 2dba_A Smooth muscle cell asso 87.6 4.2 0.00014 29.2 9.0 35 60-94 27-61 (148)
64 3vtx_A MAMA; tetratricopeptide 87.5 3.3 0.00011 31.4 8.9 64 22-95 9-73 (184)
65 4i17_A Hypothetical protein; T 87.5 1.7 5.9E-05 34.5 7.3 71 21-93 79-149 (228)
66 1hh8_A P67PHOX, NCF-2, neutrop 86.8 2.1 7.3E-05 33.3 7.4 58 24-93 12-69 (213)
67 2vq2_A PILW, putative fimbrial 86.6 5.2 0.00018 30.8 9.6 61 20-89 44-105 (225)
68 1ihg_A Cyclophilin 40; ppiase 86.4 3.3 0.00011 36.7 9.2 70 17-95 272-341 (370)
69 2vq2_A PILW, putative fimbrial 86.3 3.9 0.00013 31.5 8.8 67 20-95 10-76 (225)
70 3q15_A PSP28, response regulat 86.3 1.4 4.9E-05 38.3 6.7 76 15-94 50-134 (378)
71 3as5_A MAMA; tetratricopeptide 86.3 3.6 0.00012 30.5 8.2 65 21-94 11-75 (186)
72 2ho1_A Type 4 fimbrial biogene 86.2 5 0.00017 31.9 9.6 61 20-89 73-133 (252)
73 3u3w_A Transcriptional activat 86.1 1.9 6.6E-05 36.1 7.2 75 16-94 153-229 (293)
74 1xnf_A Lipoprotein NLPI; TPR, 86.0 4.5 0.00015 32.5 9.3 71 16-95 41-111 (275)
75 2e2e_A Formate-dependent nitri 86.0 2.3 7.9E-05 32.3 7.1 65 21-94 47-114 (177)
76 1a17_A Serine/threonine protei 86.0 4.8 0.00017 29.5 8.8 37 58-94 10-46 (166)
77 3u4t_A TPR repeat-containing p 85.9 5.4 0.00018 32.1 9.7 68 22-95 41-108 (272)
78 3ro3_A PINS homolog, G-protein 85.8 2.8 9.4E-05 30.2 7.2 60 59-118 7-67 (164)
79 3uq3_A Heat shock protein STI1 85.7 4.1 0.00014 32.2 8.8 62 22-92 143-204 (258)
80 1kt0_A FKBP51, 51 kDa FK506-bi 85.7 3.8 0.00013 37.2 9.5 68 18-95 317-385 (457)
81 1p5q_A FKBP52, FK506-binding p 85.2 5 0.00017 34.6 9.7 68 18-94 196-263 (336)
82 2qfc_A PLCR protein; TPR, HTH, 85.0 2.4 8.1E-05 35.5 7.3 84 19-106 197-282 (293)
83 3gw4_A Uncharacterized protein 84.7 6.3 0.00021 30.0 9.2 77 14-94 62-140 (203)
84 3ulq_A Response regulator aspa 84.6 2.4 8.3E-05 36.7 7.4 77 14-94 180-257 (383)
85 3uq3_A Heat shock protein STI1 84.5 2.4 8.2E-05 33.6 6.8 64 20-92 175-238 (258)
86 2q7f_A YRRB protein; TPR, prot 84.5 5.4 0.00018 31.3 8.9 67 20-95 59-125 (243)
87 2q7f_A YRRB protein; TPR, prot 84.3 5 0.00017 31.5 8.6 68 19-95 92-159 (243)
88 2yhc_A BAMD, UPF0169 lipoprote 84.2 2.6 9E-05 33.8 6.9 67 23-95 9-75 (225)
89 4i17_A Hypothetical protein; T 83.9 3.9 0.00013 32.3 7.8 64 23-94 12-75 (228)
90 1hxi_A PEX5, peroxisome target 83.8 2.2 7.6E-05 30.9 5.8 62 22-93 55-117 (121)
91 3ulq_A Response regulator aspa 83.8 5.4 0.00018 34.5 9.2 75 18-95 103-177 (383)
92 2ifu_A Gamma-SNAP; membrane fu 83.7 8.6 0.00029 32.4 10.3 125 19-148 117-254 (307)
93 2v5f_A Prolyl 4-hydroxylase su 83.6 6 0.00021 27.8 8.0 70 23-95 10-80 (104)
94 2c2l_A CHIP, carboxy terminus 83.5 2.6 9E-05 35.4 6.9 65 21-94 41-105 (281)
95 2ho1_A Type 4 fimbrial biogene 83.5 5.3 0.00018 31.8 8.5 68 20-94 107-174 (252)
96 3ieg_A DNAJ homolog subfamily 83.4 4.4 0.00015 33.7 8.3 62 23-93 277-338 (359)
97 3q15_A PSP28, response regulat 83.3 2.9 9.8E-05 36.3 7.2 99 15-117 179-278 (378)
98 3qky_A Outer membrane assembly 83.1 2.7 9.3E-05 34.2 6.7 68 22-95 56-131 (261)
99 2qfc_A PLCR protein; TPR, HTH, 82.9 3.3 0.00011 34.6 7.3 73 16-92 153-227 (293)
100 2pl2_A Hypothetical conserved 82.7 8.3 0.00028 30.6 9.4 65 22-95 9-73 (217)
101 3sf4_A G-protein-signaling mod 82.3 3.9 0.00013 34.9 7.6 33 61-93 307-339 (406)
102 3gw4_A Uncharacterized protein 82.2 4.7 0.00016 30.8 7.4 79 14-96 103-182 (203)
103 4gcn_A Protein STI-1; structur 82.2 2.8 9.5E-05 30.6 5.8 70 21-93 45-115 (127)
104 2fbn_A 70 kDa peptidylprolyl i 82.1 14 0.00047 28.5 10.3 80 14-94 34-121 (198)
105 1xnf_A Lipoprotein NLPI; TPR, 81.8 4.2 0.00014 32.7 7.3 66 21-95 80-145 (275)
106 4b4t_Q 26S proteasome regulato 81.6 4 0.00014 35.6 7.6 71 19-92 136-206 (434)
107 3cv0_A Peroxisome targeting si 81.4 7.2 0.00025 32.0 8.8 64 21-93 175-238 (327)
108 1hz4_A MALT regulatory protein 81.1 6.5 0.00022 33.6 8.7 101 16-117 91-191 (373)
109 1fch_A Peroxisomal targeting s 81.0 7.6 0.00026 32.7 9.0 64 23-95 69-132 (368)
110 4ga2_A E3 SUMO-protein ligase 80.9 2.4 8.2E-05 31.9 5.1 36 60-95 30-65 (150)
111 1wi9_A Protein C20ORF116 homol 80.7 3.8 0.00013 28.0 5.4 48 193-245 20-67 (72)
112 3mv2_B Coatomer subunit epsilo 80.7 4.7 0.00016 35.3 7.5 75 16-93 134-210 (310)
113 2if4_A ATFKBP42; FKBP-like, al 80.4 2.1 7.3E-05 37.2 5.3 65 20-94 232-297 (338)
114 2v5f_A Prolyl 4-hydroxylase su 80.1 1.5 5.2E-05 31.1 3.6 30 63-92 7-36 (104)
115 4eqf_A PEX5-related protein; a 79.7 7.6 0.00026 32.9 8.6 70 18-94 177-246 (365)
116 1fch_A Peroxisomal targeting s 79.7 8.3 0.00028 32.4 8.8 32 62-93 218-249 (368)
117 3ro2_A PINS homolog, G-protein 79.6 5.2 0.00018 32.7 7.2 100 14-118 179-281 (338)
118 3qww_A SET and MYND domain-con 79.6 4.7 0.00016 36.8 7.5 75 12-90 334-411 (433)
119 3ieg_A DNAJ homolog subfamily 79.5 8.6 0.0003 31.8 8.7 62 23-93 8-69 (359)
120 4eqf_A PEX5-related protein; a 79.3 7.5 0.00026 32.9 8.4 63 23-94 70-132 (365)
121 3ma5_A Tetratricopeptide repea 79.0 4.4 0.00015 28.0 5.7 35 61-95 7-41 (100)
122 3nf1_A KLC 1, kinesin light ch 78.8 6.7 0.00023 31.9 7.6 75 16-93 151-227 (311)
123 3cv0_A Peroxisome targeting si 78.3 13 0.00044 30.4 9.4 65 20-93 208-272 (327)
124 2xpi_A Anaphase-promoting comp 78.1 5.9 0.0002 36.1 7.8 69 18-95 516-584 (597)
125 3nf1_A KLC 1, kinesin light ch 78.1 4.4 0.00015 33.0 6.3 78 16-93 193-310 (311)
126 2y4t_A DNAJ homolog subfamily 77.7 9.6 0.00033 33.1 8.8 69 17-94 25-93 (450)
127 2yhc_A BAMD, UPF0169 lipoprote 77.5 5.3 0.00018 31.9 6.5 64 24-94 153-217 (225)
128 3ro2_A PINS homolog, G-protein 77.4 3.2 0.00011 34.0 5.3 99 14-116 219-319 (338)
129 4a1s_A PINS, partner of inscut 77.2 6.7 0.00023 33.8 7.5 101 14-118 219-321 (411)
130 4a1s_A PINS, partner of inscut 77.2 5.8 0.0002 34.2 7.1 61 58-118 220-281 (411)
131 2e2e_A Formate-dependent nitri 77.1 11 0.00038 28.3 8.1 57 29-95 21-78 (177)
132 3sf4_A G-protein-signaling mod 76.8 7.5 0.00026 33.0 7.7 100 14-118 183-285 (406)
133 1na3_A Designed protein CTPR2; 76.8 5 0.00017 26.2 5.3 35 60-94 8-42 (91)
134 3qwp_A SET and MYND domain-con 76.5 6.2 0.00021 35.9 7.3 75 12-90 323-400 (429)
135 3edt_B KLC 2, kinesin light ch 76.4 3.2 0.00011 33.2 4.9 75 16-93 125-201 (283)
136 1p5q_A FKBP52, FK506-binding p 76.2 18 0.00062 31.0 10.0 77 16-94 145-229 (336)
137 2pzi_A Probable serine/threoni 76.0 8.4 0.00029 36.9 8.5 67 21-96 436-502 (681)
138 1wao_1 Serine/threonine protei 75.8 7.5 0.00025 35.6 7.7 67 20-95 42-108 (477)
139 3u3w_A Transcriptional activat 75.5 17 0.00059 30.0 9.5 72 18-93 75-147 (293)
140 2pl2_A Hypothetical conserved 75.3 12 0.0004 29.7 8.0 62 23-94 123-184 (217)
141 3u4t_A TPR repeat-containing p 75.2 4.1 0.00014 32.8 5.3 70 23-95 181-255 (272)
142 3hym_B Cell division cycle pro 75.0 21 0.00073 29.0 9.8 63 24-95 96-159 (330)
143 3ax2_A Mitochondrial import re 74.9 5.2 0.00018 27.3 4.8 28 67-94 23-50 (73)
144 3n71_A Histone lysine methyltr 74.6 7.7 0.00026 36.0 7.5 75 12-90 345-422 (490)
145 1w3b_A UDP-N-acetylglucosamine 74.6 15 0.00051 31.4 9.0 64 21-93 206-269 (388)
146 1w3b_A UDP-N-acetylglucosamine 74.2 14 0.00047 31.6 8.7 64 22-94 37-100 (388)
147 4gyw_A UDP-N-acetylglucosamine 73.9 12 0.00041 36.4 9.0 64 21-94 12-76 (723)
148 3k9i_A BH0479 protein; putativ 73.6 5.9 0.0002 27.9 5.2 58 31-94 3-60 (117)
149 2ifu_A Gamma-SNAP; membrane fu 73.6 8.5 0.00029 32.4 7.1 75 16-95 153-228 (307)
150 3urz_A Uncharacterized protein 73.5 11 0.00037 29.7 7.3 63 24-95 10-88 (208)
151 3edt_B KLC 2, kinesin light ch 73.4 8.6 0.00029 30.6 6.8 75 16-91 83-157 (283)
152 2c2l_A CHIP, carboxy terminus 73.3 12 0.00041 31.2 7.9 64 22-94 8-71 (281)
153 2gw1_A Mitochondrial precursor 73.2 11 0.00039 33.1 8.1 65 21-94 42-106 (514)
154 3mkr_A Coatomer subunit epsilo 73.0 15 0.0005 30.9 8.4 66 20-94 132-199 (291)
155 2y4t_A DNAJ homolog subfamily 72.7 9.6 0.00033 33.1 7.4 30 64-93 332-361 (450)
156 2gw1_A Mitochondrial precursor 71.4 16 0.00053 32.2 8.6 80 20-110 414-496 (514)
157 3c18_A Nucleotidyltransferase- 71.1 50 0.0017 28.5 12.0 132 65-232 134-272 (290)
158 3fp2_A TPR repeat-containing p 70.7 12 0.0004 33.4 7.6 67 20-95 27-93 (537)
159 3rkv_A Putative peptidylprolyl 70.6 19 0.00066 26.6 7.8 75 20-94 13-96 (162)
160 2vsy_A XCC0866; transferase, g 70.0 20 0.00068 32.9 9.2 66 20-94 25-90 (568)
161 2xpi_A Anaphase-promoting comp 69.2 21 0.00073 32.3 9.2 64 22-94 377-440 (597)
162 1pc2_A Mitochondria fission pr 68.2 4.7 0.00016 31.6 3.8 36 59-94 69-104 (152)
163 2vsy_A XCC0866; transferase, g 68.1 20 0.00067 33.0 8.8 66 20-94 59-124 (568)
164 2l6j_A TPR repeat-containing p 67.5 11 0.00036 25.5 5.3 33 62-94 5-37 (111)
165 1om2_A Protein (mitochondrial 67.1 7.3 0.00025 28.0 4.3 28 67-94 26-53 (95)
166 2kat_A Uncharacterized protein 66.4 10 0.00035 26.3 5.1 33 62-94 20-52 (115)
167 2h6f_A Protein farnesyltransfe 66.3 23 0.0008 31.3 8.6 66 21-95 100-166 (382)
168 4abn_A Tetratricopeptide repea 65.9 20 0.00067 32.5 8.2 66 21-96 140-214 (474)
169 4abn_A Tetratricopeptide repea 65.1 9.8 0.00033 34.5 5.9 63 21-93 105-169 (474)
170 3fp2_A TPR repeat-containing p 65.1 29 0.001 30.7 9.1 28 65-92 348-375 (537)
171 1kt0_A FKBP51, 51 kDa FK506-bi 64.1 34 0.0012 30.7 9.4 77 16-94 266-350 (457)
172 4gyw_A UDP-N-acetylglucosamine 63.9 24 0.00081 34.3 8.7 65 21-95 46-111 (723)
173 3ffl_A Anaphase-promoting comp 63.4 8.4 0.00029 30.6 4.4 68 22-92 24-94 (167)
174 3bee_A Putative YFRE protein; 63.0 5.2 0.00018 28.0 2.9 50 34-93 25-75 (93)
175 2h6f_A Protein farnesyltransfe 62.2 32 0.0011 30.4 8.7 66 20-95 133-200 (382)
176 4b4t_T 26S proteasome regulato 61.5 75 0.0026 26.9 11.7 185 25-228 11-226 (274)
177 1qqe_A Vesicular transport pro 60.1 45 0.0016 27.5 8.9 75 17-95 116-192 (292)
178 2xvc_A ESCRT-III, SSO0910; cel 59.6 13 0.00043 24.2 3.9 33 193-230 24-56 (59)
179 1nzn_A CGI-135 protein, fissio 59.4 12 0.0004 28.4 4.4 37 58-94 71-107 (126)
180 3i4p_A Transcriptional regulat 59.3 17 0.00057 28.1 5.5 37 191-232 14-50 (162)
181 1qgp_A Protein (double strande 58.4 13 0.00045 25.2 4.2 37 193-234 30-66 (77)
182 2d58_A Allograft inflammatory 57.1 21 0.0007 25.0 5.3 56 176-236 33-88 (107)
183 1ihg_A Cyclophilin 40; ppiase 56.7 53 0.0018 28.7 9.1 79 16-94 221-306 (370)
184 1tiz_A Calmodulin-related prot 56.6 31 0.001 21.1 5.7 43 191-235 14-56 (67)
185 1hz4_A MALT regulatory protein 56.2 48 0.0016 27.9 8.5 72 17-93 134-206 (373)
186 2hr2_A Hypothetical protein; a 54.2 36 0.0012 26.6 6.7 71 20-95 59-136 (159)
187 2r5s_A Uncharacterized protein 54.2 44 0.0015 25.0 7.2 28 62-89 109-136 (176)
188 2cfx_A HTH-type transcriptiona 53.9 20 0.0007 26.8 5.1 35 193-232 18-52 (144)
189 1wao_1 Serine/threonine protei 53.8 24 0.00082 32.1 6.5 59 26-94 14-73 (477)
190 4g1t_A Interferon-induced prot 53.2 12 0.00041 32.9 4.2 70 20-92 53-125 (472)
191 3mkr_A Coatomer subunit epsilo 52.3 53 0.0018 27.3 8.1 25 19-43 66-90 (291)
192 2heo_A Z-DNA binding protein 1 52.0 22 0.00074 23.3 4.4 34 193-231 24-57 (67)
193 2lhi_A Calmodulin, serine/thre 51.3 37 0.0013 26.2 6.4 54 178-237 87-140 (176)
194 2kc7_A BFR218_protein; tetratr 51.2 27 0.00094 23.0 5.0 30 65-94 4-33 (99)
195 2cg4_A Regulatory protein ASNC 50.7 21 0.00074 26.9 4.8 35 193-232 21-55 (152)
196 2p5v_A Transcriptional regulat 50.5 23 0.0008 27.1 5.0 36 193-233 23-58 (162)
197 1ouv_A Conserved hypothetical 50.0 60 0.0021 25.9 7.8 59 22-91 10-72 (273)
198 1qbj_A Protein (double-strande 48.0 50 0.0017 22.6 5.9 51 193-248 26-76 (81)
199 2r5s_A Uncharacterized protein 47.8 10 0.00036 28.7 2.6 61 23-92 11-71 (176)
200 2ia0_A Putative HTH-type trans 47.7 27 0.00092 27.3 5.0 36 193-233 30-65 (171)
201 2qac_A Myosin A tail domain in 46.6 33 0.0011 24.8 5.2 53 177-236 86-138 (146)
202 2ktg_A Calmodulin, putative; e 46.4 52 0.0018 21.3 5.8 55 177-236 16-70 (85)
203 2v79_A DNA replication protein 45.8 14 0.00047 28.1 2.9 34 193-231 50-83 (135)
204 2dbb_A Putative HTH-type trans 45.7 23 0.0008 26.6 4.3 35 193-232 22-56 (151)
205 1avs_A Troponin C; muscle cont 45.7 51 0.0017 21.8 5.7 54 177-235 22-75 (90)
206 2joj_A Centrin protein; N-term 45.0 38 0.0013 21.5 4.8 54 177-235 9-62 (77)
207 4g1t_A Interferon-induced prot 44.2 62 0.0021 28.1 7.5 70 18-96 213-282 (472)
208 2pn6_A ST1022, 150AA long hypo 43.9 26 0.0009 26.3 4.3 35 193-232 16-50 (150)
209 2k02_A Ferrous iron transport 43.5 30 0.001 24.3 4.1 36 193-233 15-50 (87)
210 1ldd_A APC2WHB, anaphase promo 43.2 31 0.0011 23.5 4.1 38 193-230 21-64 (74)
211 3o48_A Mitochondria fission 1 43.2 30 0.001 26.4 4.4 37 58-94 75-111 (134)
212 2opo_A Polcalcin CHE A 3; calc 42.9 61 0.0021 21.0 5.7 54 177-236 13-66 (86)
213 2nsz_A Programmed cell death p 42.4 1E+02 0.0035 22.8 9.5 87 135-230 16-119 (129)
214 2w25_A Probable transcriptiona 42.3 38 0.0013 25.4 5.0 36 193-233 20-55 (150)
215 1k9u_A Polcalcin PHL P 7; poll 41.9 48 0.0016 21.1 4.9 42 191-235 16-57 (78)
216 1xn7_A Hypothetical protein YH 41.6 31 0.0011 23.5 4.0 34 193-231 15-48 (78)
217 2hgc_A YJCQ protein; SR346, st 41.2 21 0.00071 26.0 3.1 23 211-233 28-50 (102)
218 3qou_A Protein YBBN; thioredox 40.7 41 0.0014 27.8 5.5 62 22-92 121-182 (287)
219 2lv7_A Calcium-binding protein 40.4 39 0.0013 23.7 4.5 53 178-235 39-91 (100)
220 2ond_A Cleavage stimulation fa 39.9 1.2E+02 0.004 25.0 8.3 52 30-91 181-233 (308)
221 4h7y_A Dual specificity protei 39.3 66 0.0023 25.2 5.9 75 12-95 54-128 (161)
222 2cyy_A Putative HTH-type trans 39.2 26 0.0009 26.4 3.7 35 193-232 20-54 (151)
223 2e1c_A Putative HTH-type trans 39.1 30 0.001 27.0 4.1 35 193-232 40-74 (171)
224 4b4t_R RPN7, 26S proteasome re 38.6 64 0.0022 28.9 6.7 64 23-92 136-199 (429)
225 4b4t_P 26S proteasome regulato 38.1 69 0.0024 29.0 6.9 65 21-88 140-204 (445)
226 2hr2_A Hypothetical protein; a 38.0 1.3E+02 0.0043 23.3 7.5 78 13-90 6-86 (159)
227 2bl0_C Myosin regulatory light 37.9 88 0.003 22.1 6.4 53 177-235 81-133 (142)
228 1s6j_A CDPK, calcium-dependent 37.7 52 0.0018 21.4 4.7 43 191-235 36-78 (87)
229 4f3v_A ESX-1 secretion system 37.0 77 0.0027 27.0 6.6 56 27-89 144-199 (282)
230 1ouv_A Conserved hypothetical 36.6 1.4E+02 0.0048 23.6 8.0 59 21-90 113-179 (273)
231 2b1u_A Calmodulin-like protein 36.2 34 0.0012 21.2 3.4 44 191-236 19-62 (71)
232 2hzt_A Putative HTH-type trans 36.0 93 0.0032 21.8 6.1 39 194-237 27-66 (107)
233 1y8m_A FIS1; mitochondria, unk 35.5 53 0.0018 25.3 4.7 36 59-94 75-110 (144)
234 2vn2_A DNAD, chromosome replic 34.6 27 0.00092 25.9 2.9 32 195-231 52-83 (128)
235 3rm1_A Protein S100-B; alpha-h 34.2 1.1E+02 0.0036 20.6 6.5 32 192-223 25-61 (92)
236 1i1g_A Transcriptional regulat 33.9 39 0.0013 24.8 3.8 35 193-232 17-51 (141)
237 1wy9_A Allograft inflammatory 33.9 80 0.0027 23.3 5.7 55 177-236 50-104 (147)
238 1z7u_A Hypothetical protein EF 33.3 1.3E+02 0.0043 21.2 7.0 39 194-237 35-74 (112)
239 2obh_A Centrin-2; DNA repair c 32.6 84 0.0029 22.6 5.5 53 178-235 82-134 (143)
240 2mys_C Myosin; muscle protein, 32.6 1E+02 0.0036 21.7 6.0 43 191-236 21-66 (149)
241 2kz2_A Calmodulin, CAM; TR2C, 31.3 1.2E+02 0.0041 20.3 6.3 33 191-223 42-74 (94)
242 3eqx_A FIC domain containing t 30.9 2.8E+02 0.0095 24.4 13.5 71 78-149 187-261 (373)
243 1top_A Troponin C; contractIle 30.6 1.2E+02 0.004 21.9 6.1 53 177-234 98-150 (162)
244 2mys_B Myosin; muscle protein, 30.6 77 0.0026 23.3 5.1 54 178-236 98-151 (166)
245 3rjv_A Putative SEL1 repeat pr 30.1 37 0.0013 26.6 3.3 30 62-91 19-48 (212)
246 2jt1_A PEFI protein; solution 29.7 81 0.0028 21.3 4.5 32 194-230 24-55 (77)
247 2ion_A PDCD4, programmed cell 29.6 1.9E+02 0.0064 22.1 11.0 87 135-230 18-121 (152)
248 2a61_A Transcriptional regulat 29.4 1.4E+02 0.0049 21.3 6.4 40 194-238 47-86 (145)
249 2kn2_A Calmodulin; S MAPK phos 29.0 1.2E+02 0.0042 19.7 6.3 54 177-235 11-64 (92)
250 1sfx_A Conserved hypothetical 28.9 1.3E+02 0.0046 20.1 6.3 37 194-235 34-70 (109)
251 2if4_A ATFKBP42; FKBP-like, al 28.7 66 0.0023 27.4 4.9 77 16-94 177-263 (338)
252 3fwb_A Cell division control p 28.3 1.4E+02 0.0049 21.3 6.2 32 192-223 37-68 (161)
253 1zu2_A Mitochondrial import re 28.3 36 0.0012 26.5 2.8 33 63-95 82-125 (158)
254 2lmt_A Calmodulin-related prot 28.2 59 0.002 23.8 4.0 44 191-236 96-139 (148)
255 2htj_A P fimbrial regulatory p 28.1 73 0.0025 21.1 4.1 34 194-232 14-47 (81)
256 3nw0_A Non-structural maintena 27.8 28 0.00095 29.1 2.1 31 209-243 131-161 (238)
257 2nnn_A Probable transcriptiona 27.6 1.3E+02 0.0045 21.3 5.8 39 194-237 52-90 (140)
258 1gjy_A Sorcin, CP-22, V19; cal 27.6 1.8E+02 0.0062 21.2 7.0 44 177-223 74-117 (167)
259 3bpv_A Transcriptional regulat 27.6 1.6E+02 0.0056 20.7 6.3 40 194-238 43-82 (138)
260 2ond_A Cleavage stimulation fa 27.5 1.9E+02 0.0065 23.6 7.5 66 21-94 102-167 (308)
261 3fwb_A Cell division control p 27.5 91 0.0031 22.5 5.0 43 178-223 99-141 (161)
262 2f2e_A PA1607; transcription f 27.3 1.5E+02 0.0053 22.0 6.3 39 194-237 37-75 (146)
263 2fbi_A Probable transcriptiona 27.1 1.2E+02 0.0041 21.6 5.5 39 194-237 50-88 (142)
264 1k94_A Grancalcin; penta-EF-ha 27.0 1.8E+02 0.0063 21.1 7.4 44 177-223 72-115 (165)
265 2ooe_A Cleavage stimulation fa 26.9 1.2E+02 0.0041 27.2 6.5 55 29-92 23-77 (530)
266 2x4h_A Hypothetical protein SS 26.6 1.8E+02 0.0061 20.9 6.6 34 193-231 30-63 (139)
267 1ub9_A Hypothetical protein PH 26.4 1.1E+02 0.0039 20.4 5.0 35 194-233 30-64 (100)
268 3fbl_A Putative uncharacterize 26.1 26 0.0009 23.1 1.3 28 6-33 11-41 (82)
269 2jnf_A Troponin C; stretch act 26.1 1.3E+02 0.0043 21.7 5.5 43 191-235 104-146 (158)
270 3h4s_E KCBP interacting Ca2+-b 25.6 96 0.0033 22.4 4.7 53 178-235 43-96 (135)
271 1ku9_A Hypothetical protein MJ 25.2 1.1E+02 0.0039 21.9 5.1 39 194-237 41-79 (152)
272 2ovk_B RLC, myosin regulatory 25.1 1.2E+02 0.0043 21.7 5.3 50 178-236 19-68 (153)
273 3i5g_C Myosin catalytic light 24.9 1.4E+02 0.0049 22.2 5.7 68 178-250 88-156 (159)
274 2i7a_A Calpain 13; calcium-dep 24.8 1.8E+02 0.006 22.2 6.3 53 177-236 78-134 (174)
275 4gq2_M Nucleoporin NUP120; bet 24.5 37 0.0013 34.1 2.7 53 24-89 816-868 (950)
276 3ly7_A Transcriptional activat 24.3 57 0.002 29.1 3.7 56 28-94 287-343 (372)
277 2jjz_A Ionized calcium-binding 23.4 2.1E+02 0.0071 20.9 6.4 55 177-236 52-106 (150)
278 3lwf_A LIN1550 protein, putati 22.8 1.5E+02 0.005 22.8 5.4 46 193-244 43-88 (159)
279 3qou_A Protein YBBN; thioredox 22.6 1.3E+02 0.0044 24.6 5.5 70 21-93 154-251 (287)
280 1jgs_A Multiple antibiotic res 22.5 1.5E+02 0.0051 21.0 5.2 39 194-237 48-86 (138)
281 4fhn_B Nucleoporin NUP120; pro 22.3 63 0.0021 33.0 3.9 53 24-89 818-870 (1139)
282 3tgn_A ADC operon repressor AD 22.2 97 0.0033 22.3 4.2 38 195-237 52-89 (146)
283 1klx_A Cysteine rich protein B 22.2 70 0.0024 23.2 3.3 26 65-90 97-126 (138)
284 1qv0_A Obelin, OBL; photoprote 22.0 1.2E+02 0.004 22.8 4.7 56 176-236 114-169 (195)
285 3hrs_A Metalloregulator SCAR; 21.9 1.8E+02 0.0062 23.2 6.0 46 176-231 7-52 (214)
286 2fu4_A Ferric uptake regulatio 21.6 1.6E+02 0.0054 19.2 4.8 40 194-233 33-72 (83)
287 1juo_A Sorcin; calcium-binding 21.3 2.7E+02 0.0092 21.0 7.2 52 177-235 105-156 (198)
288 2y5i_A S100Z, S100 calcium bin 21.3 2E+02 0.0069 19.7 5.5 40 194-235 28-72 (99)
289 1wlz_A DJBP, CAP-binding prote 21.3 1.9E+02 0.0065 19.3 5.8 54 178-236 27-80 (105)
290 1klx_A Cysteine rich protein B 21.2 1.1E+02 0.0036 22.1 4.2 55 24-90 31-90 (138)
291 3f3x_A Transcriptional regulat 21.2 2.2E+02 0.0077 20.3 6.1 38 196-238 52-89 (144)
292 2pzi_A Probable serine/threoni 21.1 1.5E+02 0.005 28.1 6.1 115 22-152 471-599 (681)
293 3eco_A MEPR; mutlidrug efflux 20.9 1.4E+02 0.0047 21.3 4.8 39 194-237 47-85 (139)
294 3sjs_A URE3-BP sequence specif 20.9 3E+02 0.01 21.5 7.6 53 178-236 120-172 (220)
295 2qvo_A Uncharacterized protein 20.9 1.8E+02 0.0062 19.6 5.1 31 194-229 30-60 (95)
296 2d1h_A ST1889, 109AA long hypo 20.9 1.3E+02 0.0043 20.3 4.4 37 193-234 35-71 (109)
297 1uhk_A Aequorin 2, aequorin; E 20.8 1.6E+02 0.0056 21.8 5.4 55 177-236 111-165 (191)
298 1lj9_A Transcriptional regulat 20.7 1.4E+02 0.0048 21.4 4.8 38 194-236 43-80 (144)
299 3mv2_B Coatomer subunit epsilo 20.5 4E+02 0.014 22.8 10.9 115 26-152 184-306 (310)
300 1uly_A Hypothetical protein PH 20.5 1.4E+02 0.0046 23.7 4.9 35 193-232 32-66 (192)
301 3bdd_A Regulatory protein MARR 20.4 1.6E+02 0.0056 20.8 5.1 38 194-236 45-82 (142)
302 2y75_A HTH-type transcriptiona 20.4 1.3E+02 0.0044 21.7 4.5 35 193-232 25-59 (129)
303 2rdp_A Putative transcriptiona 20.2 1.8E+02 0.006 21.0 5.3 39 194-237 56-94 (150)
304 3i5g_B Myosin regulatory light 20.1 1.8E+02 0.0062 21.4 5.4 53 178-236 88-140 (153)
No 1
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-66 Score=485.41 Aligned_cols=249 Identities=22% Similarity=0.385 Sum_probs=230.6
Q ss_pred CcccccccCCC------c---hhHHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCccchhhhhhhhhHH
Q 025051 1 MKVFGVLAGKG------S---KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRL 70 (258)
Q Consensus 1 ~~~~~~~~~d~------~---Kk~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~-~p~~~~~~~~~~v~y~YY~G~~ 70 (258)
+|+|+.|.+|. | ||+|++|++|++||+|||+|++++|++++++++++. +|+++.+|++|+|+|+||+||+
T Consensus 150 ~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~ 229 (455)
T 3t5v_B 150 SRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRY 229 (455)
T ss_dssp HHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHH
Confidence 47999999983 3 999999999999999999999999999999999864 4689999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHh-cCcc-----ChHHHHHHHHHHHHHHhhcCCCCChhhhhhc---cccc-cHHHHHHHHhC
Q 025051 71 EVFNENFPAADQKLSYALIN-CNPQ-----SEANIRMILKYLIPVKLSIGILPKDWLLEKY---NLVE-YSNIVQALRRG 140 (258)
Q Consensus 71 ~~~~~~~~~A~~~L~~A~~~-c~~~-----~~~~~~~IL~~LIp~~Ll~G~~P~~~ll~~~---~l~~-y~~L~~av~~G 140 (258)
++++++|.+|+++|++||++ ||.+ ..+|+++||+||||++|++|++|++.+++++ ++.+ |.+|++|||+|
T Consensus 230 ~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~G 309 (455)
T 3t5v_B 230 YLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYG 309 (455)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999 9987 4799999999999999999999999999984 5776 99999999999
Q ss_pred CHHHHHHHHHHcHHHHHHhcH-HHHHHhhHHHHHHHHHHHH---HHHhhcCCCCCCccccHHHHHHHHHhccCC------
Q 025051 141 DLRLLRHALEEHEDQFLRSGV-YLVLEKLELQVYQRLFKKI---YIIQKQKDPSKAHQMKLDVIVKALKWLEMD------ 210 (258)
Q Consensus 141 dl~~f~~~l~~~~~~f~~~gl-ylll~~l~~~v~r~L~kkv---~~~~~~~~~~~~~~i~l~~i~~al~~~~~~------ 210 (258)
|+.+|++++++|+++|+++|+ |++++|+|.+|||||+|+| |... .+.++||+++|+.++++++.+
T Consensus 310 dl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~-----~~~srI~l~~i~~aL~~~~~~~~~~~~ 384 (455)
T 3t5v_B 310 NIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTE-----WGQNKLPYSLIERVLQLSIGPTFEDPG 384 (455)
T ss_dssp CHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTT-----TCCCEEEHHHHHHHHHHHHCCCTTSTT
T ss_pred CHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCeeeHHHHHHHHhhccCccccccc
Confidence 999999999999999999999 8999999999999999999 5442 346999999999999986432
Q ss_pred ----------CCHHHHHHHHHHHHHcCcceEEeecCceEEEEecC----CCCCCCCCC
Q 025051 211 ----------MDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ----DPFPKLNGK 254 (258)
Q Consensus 211 ----------~~~~evE~ila~LI~~G~IkGyI~~~~~~lVlsk~----~pFP~~~~~ 254 (258)
.|+||||||||+||.+|+|||||+|+++++|+||+ +|||+++++
T Consensus 385 ~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~~~~pFP~l~~~ 442 (455)
T 3t5v_B 385 AQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTMIQEIVPPVNER 442 (455)
T ss_dssp CCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSCGGGTSCCHHHH
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCCCCCCCCChHHH
Confidence 68999999999999999999999999999999999 999998653
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=3.9e-60 Score=402.22 Aligned_cols=196 Identities=43% Similarity=0.844 Sum_probs=187.1
Q ss_pred CCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccChHHHHHHHHHHHHHHhhcCCCCChhhhhhccccccHH
Q 025051 53 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSN 132 (258)
Q Consensus 53 ~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~~~~~IL~~LIp~~Ll~G~~P~~~ll~~~~l~~y~~ 132 (258)
+.||++|+|+|+||.|++++++++|.+|+++|++||++||+++.+|+++||+||||++|++|++|+++++++|++.+|.+
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~ 85 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAE 85 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCC-C
Q 025051 133 IVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMD-M 211 (258)
Q Consensus 133 L~~av~~Gdl~~f~~~l~~~~~~f~~~glylll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~-~ 211 (258)
|++||++||+.+|++++++|+++|+++|+|++++++|.+|+|+++|+||... ++++||+++|+.+++++|.+ +
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~------~~~rI~l~~i~~~l~~~~~~~~ 159 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLL------KTHQLSLDAFLVALKFMQVEDV 159 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHH------CCSEEEHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhc------CCCcccHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999885 46899999999999998754 7
Q ss_pred CHHHHHHHHHHHHHcCcceEEeecCceEEEEecCCCCCCCCCC
Q 025051 212 DVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGK 254 (258)
Q Consensus 212 ~~~evE~ila~LI~~G~IkGyI~~~~~~lVlsk~~pFP~~~~~ 254 (258)
|.|||||++|+||.+|+|||||+|+++++|+||+||||+++++
T Consensus 160 ~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP~l~~~ 202 (203)
T 3t5x_A 160 DIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLSTV 202 (203)
T ss_dssp CHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSCCGGGT
T ss_pred CHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999865
No 3
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-42 Score=323.51 Aligned_cols=211 Identities=16% Similarity=0.281 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
+.--+.|+++|.|++.+.+++|..+++... +|. +..+.+|+++|+||.||+++++++|.+|+++|.+|+++||.+.
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~-~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE---YPH-TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCT-TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCc-ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 445588999999999999999999997654 564 2367899999999999999999999999999999999999764
Q ss_pred --hHHHHHHHHHHHHHHhhcCCCCChhhhhhcc----ccccHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHhhH
Q 025051 96 --EANIRMILKYLIPVKLSIGILPKDWLLEKYN----LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLE 169 (258)
Q Consensus 96 --~~~~~~IL~~LIp~~Ll~G~~P~~~ll~~~~----l~~y~~L~~av~~Gdl~~f~~~l~~~~~~f~~~glylll~~l~ 169 (258)
.++++.++|+||||+|++|++|+..++.+++ +.+|.+|++||+.||+..|++++++|+.+|.++|+|.++++++
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr 384 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLR 384 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHH
T ss_pred hhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHH
Confidence 4889999999999999999999999999886 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCceEEEE
Q 025051 170 LQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVL 242 (258)
Q Consensus 170 ~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~~lVl 242 (258)
..|+|++++++...+ ++||+++|...+++. +.+|+||+||+||.+|.|+|+|+|++++|++
T Consensus 385 ~~vir~~irkis~~Y--------srIsL~dIa~kL~L~----s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 385 SNVIKTGIRIISLTY--------KKISLRDICLKLNLD----SEQTVEYMVSRAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HHHHHHHHHHSCCCS--------SEECHHHHHHHHHHH----HSSCHHHHHHHHHHHTSSCCEECTTTCCEEC
T ss_pred HHHHHHHHHHHHHHH--------hcccHHHHHHHhCCC----CHHHHHHHHHHHHHcCCceEEEecCCCEEEe
Confidence 999999999987665 899999999999863 3567999999999999999999999998664
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.83 E-value=3.8e-19 Score=163.90 Aligned_cols=212 Identities=15% Similarity=0.208 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccchhhhhhhhhHHhh-hhcChHHHHHHHHHHHHh
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRLEV-FNENFPAADQKLSYALIN 90 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~--~~p~~~~~~~~~~v~y~YY~G~~~~-~~~~~~~A~~~L~~A~~~ 90 (258)
+.-++-+..+..++|+.++|+..++..+..-.+. +++ .|..-+..+..+.|++++ .+++|.+|...|.+||..
T Consensus 135 ~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~----~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY----CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC----CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 5778889999999999999999999888554431 122 245667889999999999 899999999999999999
Q ss_pred cCccChHHHHHHHHHHHHHHhhcCCCCChhh-h-----hhcc---ccccHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcH
Q 025051 91 CNPQSEANIRMILKYLIPVKLSIGILPKDWL-L-----EKYN---LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGV 161 (258)
Q Consensus 91 c~~~~~~~~~~IL~~LIp~~Ll~G~~P~~~l-l-----~~~~---l~~y~~L~~av~~Gdl~~f~~~l~~~~~~f~~~gl 161 (258)
++......+..+++|++.++|+.+..+...- + ..|. +..+..|+.|++.||+..|.+.++.++..|..+..
T Consensus 211 f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~ 290 (394)
T 3txn_A 211 FDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVI 290 (394)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHH
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChH
Confidence 9888888899999999999999987554432 1 1232 34578999999999999999999998765555543
Q ss_pred H-----HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 162 Y-----LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 162 y-----lll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
. .+..+++..+++.+++ .+++|+++.++..++ ++.+|+|..+++||.+|.|+|.||+.
T Consensus 291 l~~h~~~L~~~Ir~~~L~~i~~------------pYsrIsl~~iA~~l~-----ls~~evE~~L~~lI~dg~I~a~IDq~ 353 (394)
T 3txn_A 291 VQAHLGTLYDTMLEQNLCRIIE------------PYSRVQVAHVAESIQ-----LPMPQVEKKLSQMILDKKFSGILDQG 353 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------------TCSEEEHHHHHHHHT-----CCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHhH------------hhceeeHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeEEEcCC
Confidence 2 2334444444433332 358999999999998 78999999999999999999999999
Q ss_pred ceEEEEecCC
Q 025051 237 SKVVVLSKQD 246 (258)
Q Consensus 237 ~~~lVlsk~~ 246 (258)
+++|++.+.+
T Consensus 354 ~giv~~~~~~ 363 (394)
T 3txn_A 354 EGVLIVFEET 363 (394)
T ss_dssp TTEEEECCC-
T ss_pred CCEEEECCCc
Confidence 9999997654
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.6e-17 Score=151.02 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc-
Q 025051 15 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP- 93 (258)
Q Consensus 15 ~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~- 93 (258)
.+.+++-..+.++|++.|+.+.|+++++.++.. +...+..+..-...|++..|.+|..+++|.+++.+...++..++.
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~-l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~ 202 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKT-LDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPS 202 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 568889999999999999999999999888753 111222223334455555778888999999999999999986663
Q ss_pred -cChHHHHHHHHHHHHHHhhcC-CCCChh-hhhhcc---c------cccHHHHHHHHhCCHHHHHHHHHHcHH--HHHHh
Q 025051 94 -QSEANIRMILKYLIPVKLSIG-ILPKDW-LLEKYN---L------VEYSNIVQALRRGDLRLLRHALEEHED--QFLRS 159 (258)
Q Consensus 94 -~~~~~~~~IL~~LIp~~Ll~G-~~P~~~-ll~~~~---l------~~y~~L~~av~~Gdl~~f~~~l~~~~~--~f~~~ 159 (258)
+.....+..+.+.+.+..++| .++++. ++.... + ..+.+|++++..||+..|++.++.|.. .++..
T Consensus 203 ~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~ 282 (393)
T 4b4t_O 203 TSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ 282 (393)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhh
Confidence 334556666677777776664 566664 444331 2 236889999999999999998877654 35566
Q ss_pred cHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCceE
Q 025051 160 GVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKV 239 (258)
Q Consensus 160 glylll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~~ 239 (258)
+.-.+.+++|.+++..++.. .....||++.|+.+++ ++.+|||.+++++|++|+|+|+||+.+++
T Consensus 283 ~~~~l~~kirll~l~~l~~~----------~~~~~i~f~~ia~~l~-----i~~~evE~lli~aI~~glI~GkIDQv~~~ 347 (393)
T 4b4t_O 283 HESFLRQKICLMTLIETVFV----------KNIRMLSFEDISKATH-----LPKDNVEHLVMRAISLGLLKGSIDQVNEL 347 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHCS----------SSCCCEEHHHHHHHHT-----CCHHHHHHHHHHHHHHSCSSSCEETTTTE
T ss_pred hHHHHHHHHHHHHHHHHhcc----------CCCCcCcHHHHHHHhC-----cCHHHHHHHHHHHHHcCCEEEEEcCCCCE
Confidence 66667788888887766431 1246799999999998 78999999999999999999999999999
Q ss_pred EEEecCCC
Q 025051 240 VVLSKQDP 247 (258)
Q Consensus 240 lVlsk~~p 247 (258)
|.++...|
T Consensus 348 v~v~~~~p 355 (393)
T 4b4t_O 348 VTISWVQP 355 (393)
T ss_dssp ECC-----
T ss_pred EEEEeccC
Confidence 99976554
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.1e-15 Score=143.18 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 15 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 15 ~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.--+-+.....|+|+..+++..++.+++.++.+.+.. .-+..-...|+.|.|+++..+++|.+|..+|..+|..+...
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 3456667789999999999999999998876431111 12345688999999999999999999999999999976654
Q ss_pred Ch-HHHHHHHHHHHHHHhhcCCCCChhhhh-h-c------cccccHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHH---
Q 025051 95 SE-ANIRMILKYLIPVKLSIGILPKDWLLE-K-Y------NLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVY--- 162 (258)
Q Consensus 95 ~~-~~~~~IL~~LIp~~Ll~G~~P~~~ll~-~-~------~l~~y~~L~~av~~Gdl~~f~~~l~~~~~~f~~~gly--- 162 (258)
.. ..+..+|++.|.+.++.+.-|....+. + + .+..|..|++++.++++..|..+++.++..+..+.+.
T Consensus 252 ~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~ 331 (445)
T 4b4t_P 252 SDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGG 331 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhc
Confidence 43 445677888888888877666655432 2 1 2456899999999999999999999887655444321
Q ss_pred ----HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCce
Q 025051 163 ----LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSK 238 (258)
Q Consensus 163 ----lll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~ 238 (258)
..+..++..+.-.-++++...| ++|+++.++..++ ++.+|+|..++.||.+|.|.|.||+..|
T Consensus 332 ~~~~~~~~~L~~~v~ehnl~~i~k~Y--------s~I~l~~la~lL~-----l~~~evE~~ls~mI~~g~i~akIDq~~g 398 (445)
T 4b4t_P 332 EANKHHWEDLQKRVIEHNLRVISEYY--------SRITLLRLNELLD-----LTESQTETYISDLVNQGIIYAKVNRPAK 398 (445)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHE--------EEEEHHHHHHHHT-----SCHHHHHHHHHHHHHHTSSCCEEETTTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHh--------ceeeHHHHHHHhC-----cCHHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 1222233322222234444443 8999999999997 7999999999999999999999999999
Q ss_pred EEEEecC
Q 025051 239 VVVLSKQ 245 (258)
Q Consensus 239 ~lVlsk~ 245 (258)
+|++.+.
T Consensus 399 iV~F~~~ 405 (445)
T 4b4t_P 399 IVNFEKP 405 (445)
T ss_dssp EEEC---
T ss_pred EEEECCC
Confidence 9999654
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.7e-12 Score=120.81 Aligned_cols=209 Identities=14% Similarity=0.132 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccChH
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 97 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 97 (258)
+-+...++++++..++...+...++.+++. +.. .-....+..+..|.|++++..++|.+|..+|..++..+......
T Consensus 168 id~~l~~irl~l~~~d~~~~~~~~~ka~~~-~~~--~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~ 244 (429)
T 4b4t_R 168 IDVMLTIARLGFFYNDQLYVKEKLEAVNSM-IEK--GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELT 244 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTT--CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hhc--CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchh
Confidence 345556789999999999999999877653 111 11234466899999999999999999999999999998877777
Q ss_pred HHHHHHHHHHHHHhhcCCCC-------Chhhhhhc-c----ccccHHHHHHHHhCCHHHHHHHH-HHc-----HHHHHHh
Q 025051 98 NIRMILKYLIPVKLSIGILP-------KDWLLEKY-N----LVEYSNIVQALRRGDLRLLRHAL-EEH-----EDQFLRS 159 (258)
Q Consensus 98 ~~~~IL~~LIp~~Ll~G~~P-------~~~ll~~~-~----l~~y~~L~~av~~Gdl~~f~~~l-~~~-----~~~f~~~ 159 (258)
....+++|.+.+.++...-. ..+-...+ . +.++..++.++-.++...|-+.+ +.. .+.|+..
T Consensus 245 ~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~ 324 (429)
T 4b4t_R 245 SYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNR 324 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHH
Confidence 78888899999988753211 11111122 1 23456678899999999986654 332 2456777
Q ss_pred cHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCceE
Q 025051 160 GVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKV 239 (258)
Q Consensus 160 glylll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~~ 239 (258)
++-.+...+|..+++.+++ .+++|+++.++.++. ++.+++|..+++||.+|.|.|.||+.+|+
T Consensus 325 h~~~l~~~ir~~~l~q~~~------------~Ys~I~l~~mA~~l~-----~s~~~~E~~L~~lI~~g~l~akID~~~gi 387 (429)
T 4b4t_R 325 HADFFVREMRRKVYAQLLE------------SYKTLSLKSMASAFG-----VSVAFLDNDLGKFIPNKQLNCVIDRVNGI 387 (429)
T ss_dssp THHHHHHHHHHHHHHHHHH------------TCSEEEHHHHHHHHT-----SCHHHHHHHHHHHHHHTSSCEEEETTTTE
T ss_pred HHHHHHHHHHHHHHHHHhH------------HhceeeHHHHHHHhC-----cCHHHHHHHHHHHHHcCCeEEEEcCCCCE
Confidence 7777888888888777766 468999999999997 79999999999999999999999999999
Q ss_pred EEEecCC
Q 025051 240 VVLSKQD 246 (258)
Q Consensus 240 lVlsk~~ 246 (258)
|+..+.|
T Consensus 388 v~~~~~d 394 (429)
T 4b4t_R 388 VETNRPD 394 (429)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9987654
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.8e-12 Score=117.46 Aligned_cols=214 Identities=14% Similarity=0.204 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~--~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
+....-+.+.+.++|..++++..+..+++..... .++ .|...+..++.+.|+++..+++|.+|..++..|+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY----CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC----CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4456677889999999999999999998654431 122 1345567889999999999999999999999999976
Q ss_pred CccC----hHHHHHHHHHHHHHHhhcCCCCChh-hhh-----hc-c---ccccHHHHHHHHhCCHHHHHHHHHHcHHHHH
Q 025051 92 NPQS----EANIRMILKYLIPVKLSIGILPKDW-LLE-----KY-N---LVEYSNIVQALRRGDLRLLRHALEEHEDQFL 157 (258)
Q Consensus 92 ~~~~----~~~~~~IL~~LIp~~Ll~G~~P~~~-ll~-----~~-~---l~~y~~L~~av~~Gdl~~f~~~l~~~~~~f~ 157 (258)
+... .......+++.+.+.++.+.-.... .+. .+ . ...+..+..++..+++..|+..++.+...+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 326 (434)
T 4b4t_Q 247 HNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELM 326 (434)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHT
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHc
Confidence 5433 2344556667766666543321111 111 11 1 2347889999999999999999999887665
Q ss_pred HhcHH-HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 158 RSGVY-LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 158 ~~gly-lll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
.+... ..+..+...+....++.+.. ..++|+++.++.+++ ++.+++|..+++||.+|.|.|.|++.
T Consensus 327 ~~~~~~~~~~~l~~~~~~~~l~~~~~--------~y~~i~l~~la~~l~-----~~~~~~E~~l~~lI~~~~i~a~id~~ 393 (434)
T 4b4t_Q 327 GDELTRSHFNALYDTLLESNLCKIIE--------PFECVEISHISKIIG-----LDTQQVEGKLSQMILDKIFYGVLDQG 393 (434)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHS--------SCSCEEHHHHHHHHT-----CCHHHHHHHHHHHHHHTSSCCEEETT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCHHHHHHHhC-----cCHHHHHHHHHHHHhCCCcceecccc
Confidence 55432 23333333332222232222 358999999999997 78999999999999999999999999
Q ss_pred ceEEEEec
Q 025051 237 SKVVVLSK 244 (258)
Q Consensus 237 ~~~lVlsk 244 (258)
+++|++..
T Consensus 394 ~g~v~~~~ 401 (434)
T 4b4t_Q 394 NGWLYVYE 401 (434)
T ss_dssp TTEEECC-
T ss_pred cCeEeeCC
Confidence 99999843
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.76 E-value=7.1e-08 Score=82.46 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=129.4
Q ss_pred HHHHHHhcCChhhHHHHHHHhhc-----cCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC---
Q 025051 24 LFKIYFKLGTVHLCRSVIRSIET-----ARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS--- 95 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~~i~~-----~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~--- 95 (258)
.++-++..++++.|.++++.++. ..+|+-..-...+..++-|+.|....++.+..+|++.....++..+.+.
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~ 92 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVP 92 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCC
Confidence 35677888999999999998753 1233322111223578999999999999888889998888888666543
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCChhhhh-hc---c-------ccccHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHH
Q 025051 96 EANIRMILKYLIPVKLSIGILPKDWLLE-KY---N-------LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLV 164 (258)
Q Consensus 96 ~~~~~~IL~~LIp~~Ll~G~~P~~~ll~-~~---~-------l~~y~~L~~av~~Gdl~~f~~~l~~~~~~f~~~glyll 164 (258)
.+++..++.|-+..-|..|++|.+...- .. . +.....+.+|+..||..+|-+..++........=+..+
T Consensus 93 s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l 172 (229)
T 4b0z_A 93 SSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIV 172 (229)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHH
Confidence 3578888888888878889888765422 11 1 22347889999999999999998875322111112345
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHH
Q 025051 165 LEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAI 222 (258)
Q Consensus 165 l~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~ 222 (258)
+++.|.-+.+.+.+ .+ ++||++++...|.+ -+.+|++..+..
T Consensus 173 ~~~vR~~~l~~i~k----aY--------~~i~l~~~~~~L~f----~s~~e~~~f~~~ 214 (229)
T 4b0z_A 173 MSMVRNEIATCAEK----VY--------SEIPLSNATSLLYL----ENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHH----HC--------SEEEHHHHHHHTTC----SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----Hc--------CCCCHHHHHHHhCC----CCHHHHHHHHHH
Confidence 66777766655433 33 68999999999986 278899888876
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.68 E-value=2.7e-08 Score=81.21 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=78.5
Q ss_pred ccHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcH-HHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhc
Q 025051 129 EYSNIVQALRRGDLRLLRHALEEHEDQFLRSGV-YLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL 207 (258)
Q Consensus 129 ~y~~L~~av~~Gdl~~f~~~l~~~~~~f~~~gl-ylll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~ 207 (258)
.+.++.+++..||+..|++.-+.+. ++ -.+.+|+|.+++..|..+ ...||+++|..+++
T Consensus 61 ~~~~LL~iF~~G~~~~y~~~~~~~p------~L~~~~~~KlrlLtL~sLa~~------------~~~lsy~~I~~~l~-- 120 (169)
T 3chm_A 61 VYLDLLRLFAHGTWGDYKCNATRLP------HLSPDQILKLKQLTVLTLAES------------NKVLPYDTLMVELD-- 120 (169)
T ss_dssp HHHHHHHHHHHCCHHHHHHHGGGSC------CCCHHHHHHHHHHHHHHHHHH------------CSEEEHHHHHHHHT--
T ss_pred HHHHHHHHHhcCCHHHHHHhHHhCc------chHHHHHHHHHHHHHHHHHHh------------CCCcCHHHHHHHhC--
Confidence 4789999999999999998543332 22 346688999888888663 26799999999998
Q ss_pred cCCCC-HHHHHHHHH-HHHHcCcceEEeecCceEEEEecC
Q 025051 208 EMDMD-VDEVECIVA-ILIHKNLVKGYFAHKSKVVVLSKQ 245 (258)
Q Consensus 208 ~~~~~-~~evE~ila-~LI~~G~IkGyI~~~~~~lVlsk~ 245 (258)
++ .+|||.++. ++|+.|+|+|+||+.++++.++..
T Consensus 121 ---i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~ 157 (169)
T 3chm_A 121 ---VSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFA 157 (169)
T ss_dssp ---CCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEE
T ss_pred ---CCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEee
Confidence 55 999999999 999999999999999999999764
No 11
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.38 E-value=7.8e-07 Score=64.17 Aligned_cols=52 Identities=12% Similarity=0.277 Sum_probs=48.3
Q ss_pred CccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCceEEEEecCCCC
Q 025051 192 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPF 248 (258)
Q Consensus 192 ~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~~lVlsk~~pF 248 (258)
+++|+++.+++.+. ++.+++|.++++||.+|.|.|.|++.+++|++.+.+|.
T Consensus 28 Y~~Isl~~La~ll~-----ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 28 YNNITFEELGALLE-----IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CSEEEHHHHHHHTT-----SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred cCeeeHHHHHHHHC-----cCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 58999999999997 79999999999999999999999999999999887663
No 12
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.58 E-value=0.18 Score=38.53 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+-++|++.++++.|...++. ++.. |. ....++..|.++...+++++|..++..|+...|.+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ--ER--------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 456789999999999988854 4432 32 245678899999999999999999999999887653
No 13
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.49 E-value=0.17 Score=35.72 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 96 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 96 (258)
..+-.+|++.|+++.+...++..-.. -|. ....++..|.++...+++++|.+.+..|+...+....
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVET-DPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 45667899999999999888543321 132 2236788999999999999999999999998775543
No 14
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.22 E-value=0.33 Score=35.88 Aligned_cols=30 Identities=7% Similarity=-0.184 Sum_probs=14.8
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 63 YMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 63 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
.++..|.++...++|++|.+.+..|+..-|
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 334445555555555555555555555444
No 15
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.11 E-value=0.94 Score=31.74 Aligned_cols=67 Identities=9% Similarity=-0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.....+...|+..++++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPA--------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 33445556667777777777666443221 121 13345666777777777777777777777765543
No 16
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.08 E-value=0.3 Score=35.09 Aligned_cols=70 Identities=7% Similarity=-0.030 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 17 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 17 ~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.......+-.+|++.++++.+...++..-.. .|. . ...++..|.++...+++++|.+.+..|+...|.+.
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPN------H--QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC------c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 3445566778999999999999888544321 233 1 45678899999999999999999999999877653
No 17
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.05 E-value=0.54 Score=36.35 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=39.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+-..|++.|+++.+...++..-.. -|. ...+++..|.++...++|++|.+++..|+...|.+.
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~-~P~--------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY-DFY--------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3445667778888777777543321 122 233556667777777777777777777777666543
No 18
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.97 E-value=0.42 Score=34.27 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=14.3
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 64 MYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 64 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
+|..|.++...+++++|...|..++...|
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34445555555555555555555554444
No 19
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.79 E-value=0.76 Score=31.45 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=49.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhh-hhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh
Q 025051 24 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT-YMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 96 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~-y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 96 (258)
....|++.++++.+...++..-.. .|. ... .++..|.++...+++++|.++|..|+...|....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPV--------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSS--------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 456788999999999888654332 132 123 6788999999999999999999999998886654
No 20
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.71 E-value=0.47 Score=36.04 Aligned_cols=67 Identities=12% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~-~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+...+..+|+++++++.|...+ ++++.. |. ....+|..|.++...++|++|...|..|+...|.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE--ET--------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--Cc--------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 45566788999999999998776 444431 32 245678999999999999999999999999988654
No 21
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.61 E-value=0.7 Score=35.06 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
..+-..|++.|+++.+...++..-.. -|. ...+++..|.++...++|++|...+..|+...|.+.
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVL-DHY--------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc-Ccc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34556677777777777766543221 121 133456667777777777777777777777665443
No 22
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.59 E-value=0.52 Score=33.50 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....+-.+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|...+..|+...|...
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF-DPT--------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 3445677899999999999888543321 132 234568899999999999999999999999877543
No 23
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.57 E-value=0.7 Score=32.79 Aligned_cols=63 Identities=6% Similarity=-0.183 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+-..|++.++++.+...+...-.. .|. ....++..|.++...+++++|.+.+..|+...|..
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKR-NPK--------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTT-CTT--------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 3455677888888888777544321 121 13456677888878888888888888888766643
No 24
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.43 E-value=1.1 Score=30.84 Aligned_cols=64 Identities=13% Similarity=-0.072 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+-..|++.++++.+...++..-.. .|. ....++..|.++...++|++|.+.+..|+...|..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITA-QPQ--------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45667899999999999887543321 132 13457889999999999999999999999988876
No 25
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.22 E-value=0.75 Score=34.91 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=14.3
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 64 MYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 64 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
+|..|.++...++|++|..+|..|+...|.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 344444444444444444444444444443
No 26
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.13 E-value=0.68 Score=34.43 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+-..|++.|+++.+...++..-.. -|. ...+++..|.++...++|++|..++..|+...|.+.
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML-DHY--------DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4556788889999888888654332 132 234667788888888888888888888888777654
No 27
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.04 E-value=0.51 Score=33.78 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+-..|++.|+++.+...++.+-.. .|. .......+|..|.+++..++|++|...+..++...|.+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL-YPN-----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CSS-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH-CCC-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 3456789999999999988765442 232 11223567889999999999999999999999987755
No 28
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.93 E-value=1.3 Score=29.21 Aligned_cols=65 Identities=14% Similarity=0.010 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+-..|++.++++.+...++..-.. .|. ....++..|.++...+++++|..++..|+...|..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345667899999999999887543321 122 13456889999999999999999999999987754
No 29
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.63 E-value=0.84 Score=33.60 Aligned_cols=29 Identities=14% Similarity=-0.034 Sum_probs=14.3
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 64 MYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 64 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
+|..|.++...++|++|.++|..|+..-|
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 34445555555555555555555555444
No 30
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.20 E-value=1.1 Score=30.55 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=48.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.+..+|++.++++.+...++..-.. .|. ....++..|.++...++|++|.+.+..|+...|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL-DPE--------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4566789999999999888554321 122 1345678999999999999999999999998776
No 31
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=91.18 E-value=1.5 Score=34.28 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC--------CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE--------FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~--------~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
...+-.+|++.++++.+...++..-.. .|.... .........+|..|.++...+++++|.+.+..|+...|
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 355677888999999988777543321 232110 01123446678999999999999999999999999988
Q ss_pred ccChHHHHHH
Q 025051 93 PQSEANIRMI 102 (258)
Q Consensus 93 ~~~~~~~~~I 102 (258)
..........
T Consensus 153 ~~~~~~~~~a 162 (213)
T 1hh8_A 153 EPRHSKIDKA 162 (213)
T ss_dssp SGGGGHHHHH
T ss_pred ccccchHHHH
Confidence 6654443333
No 32
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.15 E-value=0.73 Score=31.47 Aligned_cols=66 Identities=9% Similarity=-0.074 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhh-cChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN-ENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~-~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+..+|++.++++.+...++..-.. .|. .......+..|.++... +++++|.+.+..+....|.+
T Consensus 44 ~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 44 LMKGKALYNLERYEEAVDCYNYVINV-IED------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT-SCC------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh-Ccc------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 45677899999999999888554332 122 11345678899999999 99999999999999988754
No 33
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.12 E-value=1.6 Score=32.29 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=22.7
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 61 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 61 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....|..|..++..++|++|...|..|+..-|.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 51 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD 51 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc
Confidence 3445666777777777777777777777765544
No 34
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.00 E-value=0.78 Score=33.32 Aligned_cols=69 Identities=12% Similarity=-0.030 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....+-..|++.++++.+...++..-.. .|. .......++..|.++...++|++|...+..|+...|..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL-DAT-----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccc-----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 3455667788888888888777554332 122 12235566777888888888888888888888876654
No 35
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.63 E-value=0.43 Score=34.61 Aligned_cols=64 Identities=9% Similarity=-0.224 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+-..|++.++++.+...++..-.. .|. ....++..|.+++..++|++|...+..|+...|..
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhh-CcC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 44556778888888888777543221 122 23466778888888888888888888888877654
No 36
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.34 E-value=2 Score=32.42 Aligned_cols=32 Identities=6% Similarity=-0.035 Sum_probs=18.4
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 63 YMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 63 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..|..|..++..++|++|...|..|+...|.+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 54 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD 54 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCccc
Confidence 34555666666666666666666666655543
No 37
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.24 E-value=1.9 Score=30.95 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=30.2
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 60 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 60 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....++..|..++..++|++|...+..|+...|.+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 43 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA 43 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH
Confidence 455678899999999999999999999999887653
No 38
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.16 E-value=0.97 Score=31.08 Aligned_cols=64 Identities=3% Similarity=-0.190 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+...|+..++++.+...+...-.. .|. .....+..|.++...++|++|...+..|+...|..
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL-DPH--------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 34556677788888877776543321 121 13456677777777788888888888888776654
No 39
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.16 E-value=2.2 Score=29.45 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+...|++.++++.+...++..-.. .|. .....+..|.++...+++++|...+..++...|.+
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 34556777788888887777544321 121 12345667777777788888888888887766543
No 40
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.14 E-value=1.6 Score=34.22 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+...+..+|+++++++.|...+...-.. -|. ....+|..|.++...++|++|...|..|+...|.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKN--------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 45567788899999999998877543321 122 24567899999999999999999999999987755
No 41
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.14 E-value=2.2 Score=29.14 Aligned_cols=31 Identities=19% Similarity=-0.076 Sum_probs=16.9
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 63 YMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 63 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.++..|..++..++|++|...+..|+...|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 36 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH 36 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 3444555555555555555555555555443
No 42
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=90.04 E-value=0.92 Score=32.56 Aligned_cols=32 Identities=13% Similarity=-0.128 Sum_probs=16.6
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 63 YMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 63 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.++..|.+++..++|++|..++..|+...|..
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 40 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 34445555555555555555555555555543
No 43
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=89.99 E-value=2.1 Score=30.15 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=27.6
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 59 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 59 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+.-++..|..++..++|++|.+.+..|+...|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 49 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 49 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 345556778888888888888888888888876644
No 44
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=89.95 E-value=2.1 Score=32.82 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=15.8
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 64 MYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 64 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
+|..|.++...+++++|..+|..|+..+|.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 445555555555555555555555555543
No 45
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=89.78 E-value=1.1 Score=32.87 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=49.5
Q ss_pred HHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~-~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+=..|++.|+++.+-..+ ++++-. |. ....++..|.+++..++|++|.+.+..|+...|...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~--------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD--PS--------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 4556789999999999887 445432 32 245678899999999999999999999999776543
No 46
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.72 E-value=2 Score=32.46 Aligned_cols=65 Identities=5% Similarity=-0.155 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+-..|++.++++.+...++..-.. .|. ....++..|.+++..++|++|..++..|+...|..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSI-APA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 345667889999999999888543321 132 24577889999999999999999999999987754
No 47
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.69 E-value=1.4 Score=31.95 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
+...+-.+|+..++++.+...+. .++.. ..+ ........++..|.++...+++++|...+..|+..++.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33445555566666666555542 22221 011 12334445555666666666666666666666665544
No 48
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=89.64 E-value=1.2 Score=31.06 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+..+|...++++.+...++..-.. .|. ....++..|.++...+++++|...+..+....|..
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALEL-DPR--------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH-CCC--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 345677889999999999888665432 121 12345678999999999999999999999987755
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=89.58 E-value=0.73 Score=35.37 Aligned_cols=29 Identities=10% Similarity=-0.107 Sum_probs=14.3
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 65 YYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 65 YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
+..|.++...++|++|.+.++.|+...|.
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 111 YKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 44455555555555555555555554443
No 50
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=89.25 E-value=2.1 Score=31.07 Aligned_cols=64 Identities=13% Similarity=-0.092 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+-..+++.|+++.+...++..-.. -|. ....+|..|.++...+++++|...|..|+..-|...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK-EPE--------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3456788999999999888544321 132 244678899999999999999999999999877653
No 51
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.08 E-value=4.1 Score=28.16 Aligned_cols=65 Identities=14% Similarity=-0.136 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+..+|++.++++.+...++..-.. .|. ....++..|.++...+++++|...+..|+...|.+
T Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 49 FCNRAAAYSKLGNYAGAVQDCERAICI-DPA--------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhc-Ccc--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 345566777788888777766443321 121 13355777888888888888888888888876644
No 52
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.05 E-value=2.5 Score=35.58 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccChH
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 97 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 97 (258)
....+.+-.+|.++|+++.+-..++..-.. .|.... .......+++-.|.++...+++.+|..+++.|....|.....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 445667788999999999999888554331 122111 011122355678999999999999999999998876632210
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhccccccHHHHHHHHhCCHHHHHHHHHHcH
Q 025051 98 NIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHE 153 (258)
Q Consensus 98 ~~~~IL~~LIp~~Ll~G~~P~~~ll~~~~l~~y~~L~~av~~Gdl~~f~~~l~~~~ 153 (258)
. ....+..+..++..||...|+++++.++
T Consensus 236 ~---------------------------~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 236 R---------------------------ESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp -----------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred H---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 0 0012345666777888888888888764
No 53
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.90 E-value=2.4 Score=35.09 Aligned_cols=75 Identities=11% Similarity=0.005 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCC-CCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFE-EFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~-~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....+..+|++.++++.+...++..-.. .|... ..........++..|.++...+++++|.+.+..|+...|...
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEK-IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 3456677888888888888777543321 11111 111133455778899999999999999999999999877654
No 54
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.85 E-value=2.7 Score=29.96 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=15.8
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 65 YYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 65 YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
+-.|..++..++|++|.+.+..|+...|.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 36 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPE 36 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 44555555555555555555555555443
No 55
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=88.78 E-value=1.5 Score=32.47 Aligned_cols=68 Identities=10% Similarity=-0.142 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.....+-..|++.++++.+...+...-.. .|. ....++..|.++...++|++|...+..|+...|...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 34456677889999999998887543321 122 144567889999999999999999999999877653
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=88.73 E-value=2.4 Score=31.52 Aligned_cols=67 Identities=16% Similarity=0.022 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....+..+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..++...|...
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLAD-APD--------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence 3456677889999999999888654432 122 134567789999999999999999999999877543
No 57
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=88.52 E-value=1.5 Score=35.83 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=52.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+-..|++.|+++.+...++.+-.. .|. ......-+|..|.+++..++|++|.+.|..++...|.+
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~-~p~-----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTY-GRT-----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGG-CSC-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh-CCC-----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 3456788999999999999766542 232 11235677999999999999999999999999998855
No 58
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=88.44 E-value=2.3 Score=33.74 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+.+-.+|++.|+++.+...++. ++.. |. ....++..|.++...+++++|.+.+..|+..-|.+.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA--PN--------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 34578899999999999988854 4321 32 245678899999999999999999999999877654
No 59
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=88.37 E-value=1.4 Score=30.89 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
....+..+|++.++++.+...+...-.. .|... -........++..|.++...+++++|.+++..|+...|
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEKAIEV-GRENR-EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh-ccccc-hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3456677889999999998877543321 12100 01111255678899999999999999999999999876
No 60
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=87.97 E-value=3.3 Score=28.71 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+...|.+.|+++.+..+++..-.. .|. ....++..|.++...+++++|...+..+....|..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL-DPR--------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc-CCc--------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 45677889999999999988765432 121 13355678999999999999999999999987754
No 61
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.75 E-value=4 Score=27.96 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=23.7
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 61 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 61 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...++..|..+...+++++|.+.+..|+...|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 42 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 3445667777777777777777777777766543
No 62
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.64 E-value=4.9 Score=27.83 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+-..|+..++++.+...++..-.. .|. ....++..|.++...++|++|...+..|+...|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL-DPT--------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-CCc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 345667899999999999888654332 122 23566889999999999999999999999977643
No 63
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.56 E-value=4.2 Score=29.18 Aligned_cols=35 Identities=14% Similarity=-0.044 Sum_probs=26.4
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 60 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 60 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.....+..|..++..++|++|...+..|+...|.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP 61 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence 34556777888888888888888888888877653
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=87.54 E-value=3.3 Score=31.44 Aligned_cols=64 Identities=8% Similarity=-0.063 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
..+-.+|++.|+++.|...++. ++.. |. ....++..|.++...+++++|...+..|....|...
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKAD--PN--------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 4567889999999999988854 4432 32 234678899999999999999999999999887654
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=87.45 E-value=1.7 Score=34.51 Aligned_cols=71 Identities=10% Similarity=-0.067 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
...+..+|.+.|+++.+...++..-.. .|... .........++..|.++...++|++|.+.+..|+...|.
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKA-VPGNA-TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcH-HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 345667788888888888777543321 13210 011223467889999999999999999999999998775
No 66
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=86.76 E-value=2.1 Score=33.32 Aligned_cols=58 Identities=5% Similarity=-0.042 Sum_probs=32.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 24 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
+-..|++.|+++.+...++.. +++ ....++..|.++...++|++|.+.+..|+...|.
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 69 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDP--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 344556666666666555432 111 1234455666666666666666666666665554
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=86.56 E-value=5.2 Score=30.77 Aligned_cols=61 Identities=13% Similarity=-0.055 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhh-cChHHHHHHHHHHHH
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN-ENFPAADQKLSYALI 89 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~-~~~~~A~~~L~~A~~ 89 (258)
....+..+|...|+++.+...+...-.. .|. ....++..|.++... +++++|...+..++.
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSI-KPD--------SAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 3445667788888888888777554321 121 123456788888888 888888888888888
No 68
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=86.43 E-value=3.3 Score=36.66 Aligned_cols=70 Identities=10% Similarity=-0.114 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 17 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 17 ~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
...+.+.+..+|+++++++.|...++..-.. -| +....+|..|.++...++|++|.+.|+.|+...|.+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI-DP--------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-Cc--------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 3455667788999999999998877443321 12 2345678999999999999999999999999988643
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=86.35 E-value=3.9 Score=31.54 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....+...|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKS-DPK--------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh-Ccc--------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4456778899999999999988654432 132 134668899999999999999999999999877553
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=86.28 E-value=1.4 Score=38.30 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHH---------HHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHH
Q 025051 15 VGALYLTCQLFKIYFKLGTVHLCR---------SVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLS 85 (258)
Q Consensus 15 ~~~~~~~n~l~kiyf~l~~~~~~~---------~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~ 85 (258)
...+|...+.++...-++.++..+ ..++.+++...+ .+......|+|+.|.+++..++|++|.+++.
T Consensus 50 ~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~----~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~ 125 (378)
T 3q15_A 50 DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK----LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC----CccHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 455677777888888778887777 888888753111 0112233467779999999999999999999
Q ss_pred HHHHhcCcc
Q 025051 86 YALINCNPQ 94 (258)
Q Consensus 86 ~A~~~c~~~ 94 (258)
.|...+...
T Consensus 126 ~al~~~~~~ 134 (378)
T 3q15_A 126 EAEKELPFV 134 (378)
T ss_dssp HHHTTGGGC
T ss_pred HHHHHHhhC
Confidence 999987643
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=86.26 E-value=3.6 Score=30.51 Aligned_cols=65 Identities=12% Similarity=-0.049 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+...|++.++++.+...++..-.. .|. ....++..|.++...+++++|.+.+..++...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-------DAF--DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-------TSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-------Ccc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 345677889999999999888654321 121 24567889999999999999999999999987754
No 72
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=86.19 E-value=5 Score=31.87 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHH
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 89 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 89 (258)
....+..+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..++.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALAS-DSR--------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445566777888888888777544321 121 123456677777777888888888888777
No 73
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=86.07 E-value=1.9 Score=36.11 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
+...+.+.+..+|+..|+++.+...++. ++.. ..|. ........+|..|.++...++|++|.+.++.|+..++.
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4555778889999999999999987744 3321 1121 23456678899999999999999999999999998764
Q ss_pred c
Q 025051 94 Q 94 (258)
Q Consensus 94 ~ 94 (258)
.
T Consensus 229 ~ 229 (293)
T 3u3w_A 229 I 229 (293)
T ss_dssp T
T ss_pred c
Confidence 4
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=86.02 E-value=4.5 Score=32.45 Aligned_cols=71 Identities=20% Similarity=0.067 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
........+..+|+..|+++.+...++..-.. .|. ....++..|.++...++|++|...+..|+...|...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI-RPD--------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCC--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence 34445567788999999999999888554332 132 234567889999999999999999999999887654
No 75
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=85.97 E-value=2.3 Score=32.29 Aligned_cols=65 Identities=8% Similarity=-0.109 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH-hhhhcCh--HHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL-EVFNENF--PAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~-~~~~~~~--~~A~~~L~~A~~~c~~~ 94 (258)
...+..+|+..++++.+...++..-.. .|. ....++..|.+ +...+++ ++|...+..|+...|..
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQL-RGE--------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HCS--------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 344556677777777777666433221 121 12344556666 5566666 77777777777665543
No 76
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=85.96 E-value=4.8 Score=29.46 Aligned_cols=37 Identities=8% Similarity=-0.082 Sum_probs=27.9
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 58 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 58 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+....++-.|..++..++|++|...+..|+...|..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 46 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN 46 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3455666778888888888888888888888876654
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=85.91 E-value=5.4 Score=32.05 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
..+..+|++.++++.+...++..-.. |. .......-++..|.++...+++++|.+.+..|+...|...
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSK--VN----ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--SC----TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--cC----chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence 34455899999999999888654432 21 0111233468899999999999999999999999887654
No 78
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=85.85 E-value=2.8 Score=30.24 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=40.7
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh-HHHHHHHHHHHHHHhhcCCCCC
Q 025051 59 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 118 (258)
Q Consensus 59 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~-~~~~~IL~~LIp~~Ll~G~~P~ 118 (258)
....-++..|.++...+++++|..++..|+..++.... ...-.++..+--+-...|++..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 67 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFET 67 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 45566788899999999999999999999988776543 3333344444444444566554
No 79
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=85.67 E-value=4.1 Score=32.16 Aligned_cols=62 Identities=11% Similarity=-0.094 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
..+..+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|...+..|+...|
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKR-APE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-Ccc--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 34455556666666665555432221 111 123445556666666666666666666665544
No 80
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=85.66 E-value=3.8 Score=37.19 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
..+.+.+..+|+++++++.|...++ +++.. |. ....+|..|..++..++|++|..+|..|+...|.+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SA--------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 3455667889999999999987774 44421 32 245679999999999999999999999999887543
No 81
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=85.23 E-value=5 Score=34.65 Aligned_cols=68 Identities=12% Similarity=-0.016 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....+.+-.+|+++++++.|...++..-.. -|. ....+|..|.++...++|++|...|..|+...|..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALEL-DSN--------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 345567788999999999999887543321 132 24567899999999999999999999999988755
No 82
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=85.04 E-value=2.4 Score=35.53 Aligned_cols=84 Identities=11% Similarity=-0.071 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHH-HHHHHHHHHhcCccCh
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAA-DQKLSYALINCNPQSE 96 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A-~~~L~~A~~~c~~~~~ 96 (258)
.+.+.+-.+|+++|+++.|-..++. ++.. +..+ ........+|..|.++...+++++| ..++..|+..+.....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEIS--CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 5667888999999999999988743 3321 1101 1223456778999999999999999 8889999987654443
Q ss_pred HHHHHHHHHH
Q 025051 97 ANIRMILKYL 106 (258)
Q Consensus 97 ~~~~~IL~~L 106 (258)
......+.-+
T Consensus 273 ~~~~~~~~~~ 282 (293)
T 2qfc_A 273 HAYKEALVNK 282 (293)
T ss_dssp HHHHHHHHHH
T ss_pred HhhHHHHHHH
Confidence 3333333333
No 83
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=84.72 E-value=6.3 Score=30.03 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
........+.+-.+|...|+++.+...+.. ++.. ..++ ........++..|.++...+++++|...+.+|+..+
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE----DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc----cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344556677788899999999999877743 3321 1111 112456667889999999999999999999999876
Q ss_pred Ccc
Q 025051 92 NPQ 94 (258)
Q Consensus 92 ~~~ 94 (258)
...
T Consensus 138 ~~~ 140 (203)
T 3gw4_A 138 QQA 140 (203)
T ss_dssp HHT
T ss_pred Hhc
Confidence 543
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=84.63 E-value=2.4 Score=36.74 Aligned_cols=77 Identities=10% Similarity=0.008 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
........+.+-.+|..+|+++.+...++ +++.. +... .......-++..|.++...+++++|.+++..|+..+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA--EAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455667788899999999999998774 34321 1111 1233445667899999999999999999999999765
Q ss_pred cc
Q 025051 93 PQ 94 (258)
Q Consensus 93 ~~ 94 (258)
..
T Consensus 256 ~~ 257 (383)
T 3ulq_A 256 ES 257 (383)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 85
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=84.49 E-value=2.4 Score=33.60 Aligned_cols=64 Identities=9% Similarity=-0.119 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
....+..+|.+.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEK-DPN--------FVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 4456778899999999999888654332 132 245678899999999999999999999999883
No 86
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=84.45 E-value=5.4 Score=31.29 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....+..+|.+.++++.+...++..-.. .|. ....++..|.++...+++++|.+.+..++...|...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALEL-DSS--------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCc--------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 4455778889999999999888654432 121 234567789999999999999999999999887553
No 87
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=84.26 E-value=5 Score=31.50 Aligned_cols=68 Identities=13% Similarity=0.002 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.....+..+|.+.|+++.+...++..-.. .|. ....++..|.+++..+++++|...+..|+...|...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRA-GME--------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCC--------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH
Confidence 34456778899999999999888654432 122 123467789999999999999999999999877543
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=84.21 E-value=2.6 Score=33.78 Aligned_cols=67 Identities=6% Similarity=-0.091 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+...|++.|+++.+...++.+-.. .|. ......-+|..|..+...++|++|...+..++...|.+.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~-~p~-----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNR-YPF-----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTT-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 3456789999999999998766542 232 111234568899999999999999999999999988764
No 89
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=83.94 E-value=3.9 Score=32.34 Aligned_cols=64 Identities=8% Similarity=-0.056 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..-..|++.|+++.+...++..-.. .|+ .+. ...|+.|.++...++|++|.+++..|+...|..
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~-~~~------~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKL-TNN------QDS-VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-TTT------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc-cCC------CCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence 3445667777777777666433221 120 111 234457777777777777777777777766643
No 90
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=83.83 E-value=2.2 Score=30.88 Aligned_cols=62 Identities=11% Similarity=-0.148 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
..+-.+|.+.|+++.+...++. ++.. |. ....++.+|.++...+++++|...+..|+..-|.
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~al~l~--P~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 55 RSLGLTQAENEKDGLAIIALNHARMLD--PK--------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3566788999999999987744 4321 32 2346689999999999999999999999987654
No 91
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=83.77 E-value=5.4 Score=34.46 Aligned_cols=75 Identities=5% Similarity=-0.041 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
+++....-..|+..|+++.+...++..... .... -........++..|.++...+++.+|.+++..|+..++...
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESK-LIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 444555677899999999999888654331 0110 12334677889999999999999999999999999877654
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=83.71 E-value=8.6 Score=32.37 Aligned_cols=125 Identities=12% Similarity=-0.013 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh-
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE- 96 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~-~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~- 96 (258)
...+.+-.+|.+ ++++.+-..+ ++++-. |... ........++-.|.++...++|++|.+++.+|+..++....
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 334455566666 7777766555 333321 1100 11223455667899999999999999999999998775543
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChh-hhhhc----c---c---cccHHHHHHHHhCCHHHHHHH
Q 025051 97 ANIRMILKYLIPVKLSIGILPKDW-LLEKY----N---L---VEYSNIVQALRRGDLRLLRHA 148 (258)
Q Consensus 97 ~~~~~IL~~LIp~~Ll~G~~P~~~-ll~~~----~---l---~~y~~L~~av~~Gdl~~f~~~ 148 (258)
......+.-+..+.+-.|++..-. .+++. . . .....+..++..||...|.++
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~~ 254 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 122223333333333346543211 01110 0 0 113567888999999999883
No 93
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.59 E-value=6 Score=27.84 Aligned_cols=70 Identities=13% Similarity=0.000 Sum_probs=51.2
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+-+.+++.+++..|..-++. ++... ++ ..+.......++++|..+.-.+++++|..+++.|+..-|.+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~-~~--~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLD-EG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-TT--CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhh-cc--CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 456788999999999977744 33210 11 012234556668999999999999999999999999877653
No 94
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.49 E-value=2.6 Score=35.40 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+-.+|.++|+++.+...++..-.. -|. ....+|..|..+...++|++|...|..|+...|.+
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 41 YTNRALCYLKMQQPEQALADCRRALEL-DGQ--------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 345667888888888888777543321 121 23566788999999999999999999999987754
No 95
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=83.47 E-value=5.3 Score=31.76 Aligned_cols=68 Identities=6% Similarity=-0.035 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....+..+|++.++++.+...++..-.. |. . ......++..|.++...+++++|.+.+..|+...|..
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~---~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQD--TL---Y--PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTC--TT---C--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhC--cc---C--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 4456778899999999999988665431 11 1 1234566788999999999999999999999988764
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=83.44 E-value=4.4 Score=33.69 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.+..+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|.
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQM-EPD--------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3445556666666665555433221 111 1234455566666666666666666666665543
No 97
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=83.29 E-value=2.9 Score=36.31 Aligned_cols=99 Identities=10% Similarity=-0.039 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 15 VGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 15 ~~~~~~~n~l~kiyf~l~~~~~~~~l~-~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.......+.+-.+|..+|+++.|...+ ++++.. +... ........++..|.++...+++++|.+++..|+..+..
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA--MDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 345666778889999999999999876 444421 1100 12245556788999999999999999999999996654
Q ss_pred cChHHHHHHHHHHHHHHhhcCCCC
Q 025051 94 QSEANIRMILKYLIPVKLSIGILP 117 (258)
Q Consensus 94 ~~~~~~~~IL~~LIp~~Ll~G~~P 117 (258)
...+..-.++..+--+-.-.|++.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHH
Confidence 333222333333332333345543
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=83.15 E-value=2.7 Score=34.22 Aligned_cols=68 Identities=9% Similarity=-0.063 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh--------hcChHHHHHHHHHHHHhcCc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF--------NENFPAADQKLSYALINCNP 93 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~--------~~~~~~A~~~L~~A~~~c~~ 93 (258)
..+-.+|++.|+++.+...++.+-.. .|. ......-+|..|.+++. .+++.+|...|..++...|.
T Consensus 56 ~~lg~~~~~~~~~~~A~~~~~~~l~~-~p~-----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 56 FYLARAYYQNKEYLLAASEYERFIQI-YQI-----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHH-CCC-----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 34567789999999999888655432 232 11233457889999998 99999999999999999886
Q ss_pred cC
Q 025051 94 QS 95 (258)
Q Consensus 94 ~~ 95 (258)
+.
T Consensus 130 ~~ 131 (261)
T 3qky_A 130 HE 131 (261)
T ss_dssp CT
T ss_pred ch
Confidence 64
No 99
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=82.91 E-value=3.3 Score=34.60 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
+...+.+.+..+|...|+++.+...++ +++-. ..|. .....+..++..|.++...++|++|.+.++.|+..++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc----cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455677888999999999999998874 44221 1221 1112336778899999999999999999999999764
No 100
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=82.71 E-value=8.3 Score=30.61 Aligned_cols=65 Identities=9% Similarity=-0.011 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
..+-..|++.|+++.+...++..-.. -|. ....++..|.++...+++++|...+..|+...|...
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKE-NPQ--------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-SSS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 35567889999999999888654331 132 345678999999999999999999999999888654
No 101
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=82.26 E-value=3.9 Score=34.89 Aligned_cols=33 Identities=12% Similarity=-0.141 Sum_probs=18.5
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 61 VTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 61 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
...++..|.++...+++++|.+++..|+..++.
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455555555556666666666666655443
No 102
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=82.18 E-value=4.7 Score=30.79 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
........+.+-.+|...|+++.+...+.. ++.. +... .......-+...|.++...+++++|.+.+.+|+..+.
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYA--QQAD--DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hhcc--chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 335566777888999999999999887744 3221 1100 1222344467899999999999999999999999877
Q ss_pred ccCh
Q 025051 93 PQSE 96 (258)
Q Consensus 93 ~~~~ 96 (258)
..+.
T Consensus 179 ~~~~ 182 (203)
T 3gw4_A 179 ELED 182 (203)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 5543
No 103
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=82.16 E-value=2.8 Score=30.59 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~-~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.+.+-.+|+++++++.|-..+ ++++-. |.... .......-++..|.++...++|++|.+.+..|+...|.
T Consensus 45 ~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~-~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 45 YNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRA-DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccch-hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 345678899999999998766 445432 21100 11223345577999999999999999999999997663
No 104
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=82.09 E-value=14 Score=28.49 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCcc--------chhhhhhhhhHHhhhhcChHHHHHHHH
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKR--------DKVTYMYYTGRLEVFNENFPAADQKLS 85 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~--------~~v~y~YY~G~~~~~~~~~~~A~~~L~ 85 (258)
+.........+-..|++.++++.+...++..-.. .|....+... -....++..|.+++..++|++|..++.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344455566778899999999999888543321 2321111100 013677889999999999999999999
Q ss_pred HHHHhcCcc
Q 025051 86 YALINCNPQ 94 (258)
Q Consensus 86 ~A~~~c~~~ 94 (258)
.|+...|..
T Consensus 113 ~al~~~p~~ 121 (198)
T 2fbn_A 113 KVLKIDKNN 121 (198)
T ss_dssp HHHHHSTTC
T ss_pred HHHHhCccc
Confidence 999986644
No 105
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=81.79 E-value=4.2 Score=32.67 Aligned_cols=66 Identities=9% Similarity=-0.132 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
...+..+|.+.|+++.+...++..-.. .|. ....++..|.+++..+++++|...+..|+...|...
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLEL-DPT--------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc-Ccc--------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 455677899999999999888554332 132 135678899999999999999999999999887654
No 106
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.64 E-value=4 Score=35.61 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
-+...+.++|+..|+++.+..++..+-.. ... .-.+...+.++...|++|...++|.+|...+..|....+
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLRE-FKK--LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTT--SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHH-HHh--cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 35567889999999999999998765532 111 113567888999999999999999999999999988554
No 107
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=81.37 E-value=7.2 Score=31.99 Aligned_cols=64 Identities=13% Similarity=-0.079 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
...+..+|.+.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|.
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL-RPD--------DAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344555666666666666665433221 111 1233455666666666666666666666665553
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=81.13 E-value=6.5 Score=33.58 Aligned_cols=101 Identities=15% Similarity=0.005 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
+.....+.+-.+|+..|+++.+...+...-.. .+..............+..|.++...+++++|..++..|+..++...
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQL-INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 34445566778888899998888776442211 01000000122344556699999999999999999999999988655
Q ss_pred hHHHHHHHHHHHHHHhhcCCCC
Q 025051 96 EANIRMILKYLIPVKLSIGILP 117 (258)
Q Consensus 96 ~~~~~~IL~~LIp~~Ll~G~~P 117 (258)
....-..+..+.-+.+..|++.
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~ 191 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLD 191 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHH
Confidence 4322223333333333346653
No 109
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=81.02 E-value=7.6 Score=32.67 Aligned_cols=64 Identities=13% Similarity=-0.069 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+-..|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|...
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 132 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQ-DPK--------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH
Confidence 5677889999999999888655432 132 234667899999999999999999999999887543
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=80.87 E-value=2.4 Score=31.90 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=30.9
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 60 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 60 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.....|..|++|+..++|++|.++|..|+..-|.+.
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~ 65 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP 65 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 344568899999999999999999999999877653
No 111
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=80.75 E-value=3.8 Score=27.98 Aligned_cols=48 Identities=8% Similarity=0.207 Sum_probs=42.6
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCceEEEEecC
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 245 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~~lVlsk~ 245 (258)
.-+++.+++.-+. +..+++..-+-.|..+|.|.|.|+-..+.+-+|..
T Consensus 20 Kvv~LedLA~~F~-----l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 20 KVVLLEDLAFQMG-----LRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp SEECHHHHHHHHC-----SCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred CeeeHHHHHHHhC-----CChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 4689999999987 68899999999999999999999998888877764
No 112
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=80.68 E-value=4.7 Score=35.30 Aligned_cols=75 Identities=8% Similarity=0.005 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhc--ChHHHHHHHHHHHHhcCc
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE--NFPAADQKLSYALINCNP 93 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~--~~~~A~~~L~~A~~~c~~ 93 (258)
+.+-...+...+|+++|+.++++.+++.+... -|+ .....+.+....-.|-+.+..+ ++++|+..|+++...+|.
T Consensus 134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-~~d--~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNA-IED--TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCH--HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-Ccc--ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 56667778889999999999999999888653 110 0001234445555687788877 999999999999888874
No 113
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=80.41 E-value=2.1 Score=37.19 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
+.+.+..+|+++++++.|...++ +++.. |. ....+|..|..++..++|++|..+|..|+...|.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EK--------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 45667888999999999987774 34421 21 24567899999999999999999999999877654
No 114
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=80.15 E-value=1.5 Score=31.13 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=27.0
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 63 YMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 63 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
-+|-.|..++-+++|..|..+|..|+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 457899999999999999999999999654
No 115
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=79.72 E-value=7.6 Score=32.91 Aligned_cols=70 Identities=14% Similarity=-0.051 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+...+..+|.+.|+++.+...++..-.. .|. ......++..|.++...+++++|.+.+..|+...|..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-NGD------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH-SCS------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-CcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 344555666677777777777666443321 121 1122344566777777777777777777777766544
No 116
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=79.69 E-value=8.3 Score=32.44 Aligned_cols=32 Identities=16% Similarity=-0.009 Sum_probs=18.6
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 62 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 62 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
..++..|.++...+++++|...+..|+...|.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34455566666666666666666666665543
No 117
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=79.59 E-value=5.2 Score=32.66 Aligned_cols=100 Identities=14% Similarity=-0.014 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
..........+..+|+..|+++.+...++. ++.. ..+ ........++..|.++...+++++|.+.+..|+..+
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 444555666777888888888888877644 3221 111 123456667888888888888888888888888877
Q ss_pred CccCh-HHHHHHHHHHHHHHhhcCCCCC
Q 025051 92 NPQSE-ANIRMILKYLIPVKLSIGILPK 118 (258)
Q Consensus 92 ~~~~~-~~~~~IL~~LIp~~Ll~G~~P~ 118 (258)
+.... .....++..+.-+-...|++..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence 76543 3333344444444444566554
No 118
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=79.58 E-value=4.7 Score=36.81 Aligned_cols=75 Identities=16% Similarity=0.023 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc--CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 025051 12 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 88 (258)
Q Consensus 12 ~Kk~~~~~~~n~l~kiyf~l~~~~~~~~l~~-~i~~~--~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 88 (258)
..+..+.-..|.+..+|...|+++.|..+.+ +++.. .+++ .--+..+-++-+|.+|..+|+|++|...+++|+
T Consensus 334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----YSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4456788889999999999999999998874 33321 1222 123456667789999999999999999999999
Q ss_pred Hh
Q 025051 89 IN 90 (258)
Q Consensus 89 ~~ 90 (258)
..
T Consensus 410 ~i 411 (433)
T 3qww_A 410 AI 411 (433)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 119
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=79.52 E-value=8.6 Score=31.83 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=36.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.+-..|++.|+++.+...++.+-.. .|. ....++..|.+++..+++++|...+..|+...|.
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 69 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDG-DPD--------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-Ccc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4456677777777777776543321 121 1234566666666666666666666666665553
No 120
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=79.31 E-value=7.5 Score=32.95 Aligned_cols=63 Identities=16% Similarity=-0.051 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+-..|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.|..|+...|..
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 132 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQ-DPG--------DAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 4466788999999999888654432 132 24456889999999999999999999999987754
No 121
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=79.02 E-value=4.4 Score=27.98 Aligned_cols=35 Identities=9% Similarity=-0.126 Sum_probs=30.7
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 61 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 61 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
...+|..|.+++..++|++|.++|..|+..-|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 44678899999999999999999999999877654
No 122
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=78.78 E-value=6.7 Score=31.92 Aligned_cols=75 Identities=7% Similarity=-0.076 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~--~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
........+..+|.+.|+++.+...++..-.. .... -........++..|.++...+++++|.+.+..|+..++.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG---PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC---TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44556677889999999999999887543321 0000 012345567788999999999999999999999997664
No 123
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=78.34 E-value=13 Score=30.39 Aligned_cols=65 Identities=12% Similarity=-0.098 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
....+..+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDI-NPG--------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4456778899999999999888654332 122 2335678999999999999999999999998776
No 124
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=78.15 E-value=5.9 Score=36.11 Aligned_cols=69 Identities=10% Similarity=-0.114 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....+.+..+|.+.|+++.+...++.+-.. .|+ ....++..|.++...+++++|.+.+++|+...|.+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL-STN--------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 345677888999999999999999765432 132 235668899999999999999999999999888654
No 125
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=78.09 E-value=4.4 Score=33.03 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc-------CC-CC------------------------------CCC--C
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETA-------RI-FD------------------------------FEE--F 55 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~-------~~-p~------------------------------~~~--~ 55 (258)
........+..+|.+.|+++.+...++..-.. .. +. +.. -
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 34556677889999999999999887543320 00 00 000 0
Q ss_pred CccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 56 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 56 ~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
........++..|.++...+++++|.+.+..|+...+.
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12345566788999999999999999999999987653
No 126
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=77.67 E-value=9.6 Score=33.15 Aligned_cols=69 Identities=13% Similarity=-0.065 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 17 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 17 ~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.......+...|++.|+++.+..+++.+-.. .|. ....++..|.+++..+++++|...+..|+...|..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPD--------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3445566677889999999999888654432 122 24566778888888888888888888888876654
No 127
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=77.50 E-value=5.3 Score=31.88 Aligned_cols=64 Identities=6% Similarity=-0.064 Sum_probs=42.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccc-hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 24 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRD-KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~-~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
+..+|++.++++.+...++.+-.. .| .+. ...-.|..|..+.-.+++++|.+.+..+....|.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~-~p------~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRD-YP------DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-ST------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH-Cc------CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 456778888888887777554331 23 222 22456778888888888888888888777766543
No 128
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=77.42 E-value=3.2 Score=33.97 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i-~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
..........+..+|++.|+++.+...++.. +.. +... ........++..|.++...+++++|.+.+..|+...+
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhhc--chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4445556667788888889988888777543 321 1111 1345566778888888888999999999988888777
Q ss_pred ccCh-HHHHHHHHHHHHHHhhcCCC
Q 025051 93 PQSE-ANIRMILKYLIPVKLSIGIL 116 (258)
Q Consensus 93 ~~~~-~~~~~IL~~LIp~~Ll~G~~ 116 (258)
.... .....++..+.-+-.-.|++
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 5443 22333333333333334543
No 129
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=77.24 E-value=6.7 Score=33.78 Aligned_cols=101 Identities=14% Similarity=0.042 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
..........+..+|+..|+++.+...++. ++.. +... ........++..|.++...+++++|.+.+..|+..++
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 345555667788889999999988877744 3321 1111 2234566778889999999999999999999998887
Q ss_pred ccCh-HHHHHHHHHHHHHHhhcCCCCC
Q 025051 93 PQSE-ANIRMILKYLIPVKLSIGILPK 118 (258)
Q Consensus 93 ~~~~-~~~~~IL~~LIp~~Ll~G~~P~ 118 (258)
.... ...-.++..+.-+-...|++..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6543 2333444444444455666554
No 130
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=77.17 E-value=5.8 Score=34.16 Aligned_cols=61 Identities=15% Similarity=-0.004 Sum_probs=44.4
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh-HHHHHHHHHHHHHHhhcCCCCC
Q 025051 58 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 118 (258)
Q Consensus 58 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~-~~~~~IL~~LIp~~Ll~G~~P~ 118 (258)
......++..|.++...++|++|.+++.+|+..++.... ...-.++..+.-+-+..|++..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 345667899999999999999999999999998886544 3333444444444455676554
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=77.14 E-value=11 Score=28.26 Aligned_cols=57 Identities=7% Similarity=0.013 Sum_probs=39.0
Q ss_pred HhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 29 FKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 29 f~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
+..++++.+...++. ++.. |. ....++..|.+++..++|++|...+..|+...|.+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 78 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQ--------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 456677777666644 3321 32 234678899999999999999999999999888654
No 132
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=76.84 E-value=7.5 Score=33.03 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 14 RVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 14 k~~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
........+.+..+|...|+++.+...++. ++.. ..+ ........++..|.++...+++++|...+..|+...
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 445555666777888888888888877643 3321 111 123456667888888888888888888888888877
Q ss_pred CccChH-HHHHHHHHHHHHHhhcCCCCC
Q 025051 92 NPQSEA-NIRMILKYLIPVKLSIGILPK 118 (258)
Q Consensus 92 ~~~~~~-~~~~IL~~LIp~~Ll~G~~P~ 118 (258)
+..... ..-.++..+.-+-...|++..
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHH
Confidence 754432 233333334333344555443
No 133
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=76.84 E-value=5 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=30.5
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 60 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 60 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....++..|..+...++|++|..++..|+...|..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 44567889999999999999999999999987754
No 134
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=76.45 E-value=6.2 Score=35.85 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhc--cCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 025051 12 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IET--ARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 88 (258)
Q Consensus 12 ~Kk~~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~--~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 88 (258)
..+..+.-..+.+..+|...|+++.|..+.+. ++. ..+++ .--+...-++-+|.+|..+|+|++|...+.+|+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45667888999999999999999999988743 332 12332 123456667889999999999999999999999
Q ss_pred Hh
Q 025051 89 IN 90 (258)
Q Consensus 89 ~~ 90 (258)
..
T Consensus 399 ~i 400 (429)
T 3qwp_A 399 DI 400 (429)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 135
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=76.41 E-value=3.2 Score=33.20 Aligned_cols=75 Identities=7% Similarity=-0.065 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~--~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
........+..+|+..|+++.+...++..-.. .... -........++..|.++...+++++|...+..|+..++.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG---PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44556677888999999999999887543321 0000 012335566788999999999999999999999997653
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=76.18 E-value=18 Score=31.00 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCC-------ccchhhhhhhhhHHhhhhcChHHHHHHHHHH
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYA 87 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~-------~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A 87 (258)
........+-..|++.++++.+...++. ++. .|....+. .......++..|.+++..++|++|..++..|
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566778889999999999988744 443 23211111 1112567788999999999999999999999
Q ss_pred HHhcCcc
Q 025051 88 LINCNPQ 94 (258)
Q Consensus 88 ~~~c~~~ 94 (258)
+...|..
T Consensus 223 l~~~p~~ 229 (336)
T 1p5q_A 223 LELDSNN 229 (336)
T ss_dssp HHHCTTC
T ss_pred HHhCCCc
Confidence 9987754
No 137
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=76.03 E-value=8.4 Score=36.88 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 96 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 96 (258)
...+...|++.|+++.+...++..-.. -|. ....+|+.|.++...++|++|.++|++|+..-|....
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 502 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAER-VGW--------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA 502 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-HCC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 345677899999999999888544321 132 2456789999999999999999999999998886653
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=75.85 E-value=7.5 Score=35.56 Aligned_cols=67 Identities=7% Similarity=-0.106 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
..+.+-.+|.++++++.|...++..-.. -|. ....+|..|.++...++|++|.+.+.+|+...|.+.
T Consensus 42 ~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 42 YYGNRSLAYLRTECYGYALGDATRAIEL-DKK--------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3456778899999999999887543321 122 244678899999999999999999999999887654
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=75.47 E-value=17 Score=30.00 Aligned_cols=72 Identities=8% Similarity=-0.040 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCc-cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPK-RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~-~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.......+..+++.++++.+..+++.+... .+. .+. .+...|++..|.++...+++++|..++..|+...+.
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCC---CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccC---ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 333445678899999999999999776542 111 111 233556666899998889999999999999996544
No 140
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=75.31 E-value=12 Score=29.71 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=38.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+-.+|...|+++.+...++..-... +....++..|.++...+++++|...+..|+..-|.+
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALALE----------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45556777777777776664322210 123345667777777777777777777777765543
No 141
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=75.16 E-value=4.1 Score=32.77 Aligned_cols=70 Identities=13% Similarity=-0.052 Sum_probs=47.4
Q ss_pred HHHHHHHhcCC---hhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 23 QLFKIYFKLGT---VHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 23 ~l~kiyf~l~~---~~~~~~l~~~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+..+|+.+++ ++.+...+.. ++.. ..|.. ........+++.|.++...+++++|.+.+..|+...|.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK---YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG---GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 35566777776 6556555432 2221 11221 0233567788999999999999999999999999888654
No 142
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=75.01 E-value=21 Score=29.05 Aligned_cols=63 Identities=11% Similarity=-0.090 Sum_probs=37.1
Q ss_pred HHHHHHhcC-ChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 24 LFKIYFKLG-TVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 24 l~kiyf~l~-~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
+..+|+..+ +++.+...+...-.. .|. ....++..|.++...+++++|.+.+..|+...|...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 159 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTL-EKT--------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTT-CTT--------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence 345666666 666666655433221 121 122355677777777777777777777777666543
No 143
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.85 E-value=5.2 Score=27.34 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.0
Q ss_pred hhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 67 TGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 67 ~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.|.-.+.++++++|-.||..|+.-|+..
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 6777788899999999999999999964
No 144
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=74.60 E-value=7.7 Score=36.00 Aligned_cols=75 Identities=8% Similarity=-0.037 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc--CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 025051 12 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 88 (258)
Q Consensus 12 ~Kk~~~~~~~n~l~kiyf~l~~~~~~~~l~~-~i~~~--~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 88 (258)
..+..+.-..|.+..+|...|+++.|..+.. +++.. .+++ .--+...-+.-+|.+|..+|+|++|...+.+|+
T Consensus 345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456788889999999999999999998874 34321 1222 123466667889999999999999999999999
Q ss_pred Hh
Q 025051 89 IN 90 (258)
Q Consensus 89 ~~ 90 (258)
..
T Consensus 421 ~i 422 (490)
T 3n71_A 421 AI 422 (490)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 145
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=74.58 E-value=15 Score=31.39 Aligned_cols=64 Identities=5% Similarity=-0.224 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
...+-.+|...++++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+..-|.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSL-SPN--------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CcC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344556666777777766655332211 121 1223455666666677777777777777665543
No 146
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=74.16 E-value=14 Score=31.60 Aligned_cols=64 Identities=11% Similarity=-0.139 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+..+|++.++++.+...++..-.. .|. ....++..|.+++..+++++|.+.+..|+...|..
T Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (388)
T 1w3b_A 37 LLLSSIHFQCRRLDRSAHFSTLAIKQ-NPL--------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch
Confidence 34566788888888888777543321 122 23456888999999999999999999998876654
No 147
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=73.89 E-value=12 Score=36.42 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.+.+-.+|.+.|+++.|...++ +++-. |. ....++.+|.++...+++++|.+++++|+..-|..
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~--------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--PE--------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4566778889999999988774 44432 32 23455778888888888888888888888876654
No 148
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=73.59 E-value=5.9 Score=27.90 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=39.0
Q ss_pred cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 31 LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 31 l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.|+++.+...++..-... + ........++.+|.++...++|++|..++..|+...|..
T Consensus 3 ~g~~~~A~~~~~~al~~~-~-----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG-L-----QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSSC-C-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcC-C-----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 456666666664322210 1 012356678899999999999999999999999987765
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=73.57 E-value=8.5 Score=32.39 Aligned_cols=75 Identities=8% Similarity=-0.001 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
......+.+-.+|.++|+++.+-..+.. ++.. |.... ......+++-.|.+++..+++++|..++..|+ ..|..
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMY--KEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 3445667788899999999999988754 3321 11111 12234456667888888899999999999999 76654
Q ss_pred C
Q 025051 95 S 95 (258)
Q Consensus 95 ~ 95 (258)
.
T Consensus 228 ~ 228 (307)
T 2ifu_A 228 S 228 (307)
T ss_dssp T
T ss_pred C
Confidence 3
No 150
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=73.46 E-value=11 Score=29.68 Aligned_cols=63 Identities=14% Similarity=0.047 Sum_probs=47.3
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhh----------------hhHHhhhhcChHHHHHHHHHH
Q 025051 24 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY----------------TGRLEVFNENFPAADQKLSYA 87 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY----------------~G~~~~~~~~~~~A~~~L~~A 87 (258)
.-..+++.|+++.+...++..-.. -|. ....+|+ .|.++...+++++|...+..|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL-NID--------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CHH--------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCC--------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345678999999999888553321 121 2234455 999999999999999999999
Q ss_pred HHhcCccC
Q 025051 88 LINCNPQS 95 (258)
Q Consensus 88 ~~~c~~~~ 95 (258)
+...|.+.
T Consensus 81 l~~~p~~~ 88 (208)
T 3urz_A 81 LQKAPNNV 88 (208)
T ss_dssp HHHCTTCH
T ss_pred HHHCCCCH
Confidence 99887653
No 151
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=73.39 E-value=8.6 Score=30.56 Aligned_cols=75 Identities=11% Similarity=-0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
......+.+..+|...|+++.+...+...-.. ......-........++..|.++...+++++|.+.+..|+..+
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44556677889999999999999887543221 0000000123456677889999999999999999999999975
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=73.29 E-value=12 Score=31.21 Aligned_cols=64 Identities=9% Similarity=-0.224 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+-..|++.|+++.+...++..-.. .|. ...+++..|.++...++|++|...+..|+..-|..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 44567889999999999888543321 132 34577889999999999999999999999987654
No 153
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=73.24 E-value=11 Score=33.10 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
...+..+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|...|..++...|.+
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 106 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALEL-KPD--------YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-CSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhcc-ChH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 445567888888888888877544322 132 23456778888888899999999999988877644
No 154
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=73.02 E-value=15 Score=30.92 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh--hhcChHHHHHHHHHHHHhcCcc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV--FNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~--~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....+..+|.++|+++.+...++.+.... |+ . ..+....|.+.+ -.+++++|...|+++...+|.+
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~------~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD-ED------A--TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------C--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cC------c--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 44556778889999999988886655421 32 1 112222232222 2356666666666666665543
No 155
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=72.68 E-value=9.6 Score=33.13 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=15.6
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 64 MYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 64 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
++..|.++...+++++|...++.|+...|.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 344555555555555555555555554443
No 156
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=71.36 E-value=16 Score=32.20 Aligned_cols=80 Identities=4% Similarity=-0.081 Sum_probs=57.0
Q ss_pred HHHHHHHHHHh---cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh
Q 025051 20 LTCQLFKIYFK---LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 96 (258)
Q Consensus 20 ~~n~l~kiyf~---l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 96 (258)
....+..+|++ .|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|.+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~- 483 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKL-DPR--------SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME- 483 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH-
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH-
Confidence 44566788899 99999999888654332 122 234568899999999999999999999999887543
Q ss_pred HHHHHHHHHHHHHH
Q 025051 97 ANIRMILKYLIPVK 110 (258)
Q Consensus 97 ~~~~~IL~~LIp~~ 110 (258)
.....+.++-...
T Consensus 484 -~~~~~~~~~~~~~ 496 (514)
T 2gw1_A 484 -EKLQAITFAEAAK 496 (514)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3333344444433
No 157
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=71.11 E-value=50 Score=28.48 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=77.2
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcCccChHHHHHHHHHHHHHHhh-cCCCCChhhhhhc-cccc-----cHHHHHHH
Q 025051 65 YYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS-IGILPKDWLLEKY-NLVE-----YSNIVQAL 137 (258)
Q Consensus 65 YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~~~~~IL~~LIp~~Ll-~G~~P~~~ll~~~-~l~~-----y~~L~~av 137 (258)
|=-|+-++.++++-+|+.+.-.|+.+-- =..++ .|.+|+...|.+- ++.+ |.+|+.
T Consensus 134 y~~~K~~l~~~~~ldAY~~vi~aLhh~A---------------rL~vie~G~~pe~tvw~qv~~i~~~iyKLyeEL~~-- 196 (290)
T 3c18_A 134 FQDGRNLFSRGNYYDAYTHVHHALHHLA---------------RLSVLEKGAHPEVVVWEQARLDDPDVYKLYEQLLL-- 196 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHHHHHTTCCCCTTHHHHHHHHCHHHHHHHHHHHT--
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHH---------------HhheeccCCcCchhHHHHHHhcCHHHHHHHHHHhc--
Confidence 5589999999999999999999999631 12333 6999999999864 2321 344432
Q ss_pred HhCCHHHHHHHHHHcHHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHH
Q 025051 138 RRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVE 217 (258)
Q Consensus 138 ~~Gdl~~f~~~l~~~~~~f~~~glylll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE 217 (258)
...++.+=-+.+=-..++++..++-..... +.++++ .+..-.|+.++..-..+. -=.-++|
T Consensus 197 s~E~lekrielllla~Ef~I~sk~~~~~~~-----Ll~~m~-----------ek~~~wS~~Ei~~~p~~~---~~~idle 257 (290)
T 3c18_A 197 SEETLEQRIHLALIGLEHLLQSKVLSGGKY-----LFEVMR-----------ERDRPWTMHELMEESRLT---ELKVDLG 257 (290)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHTHHHHHHH-----HHHHHT-----------TSSSCEEHHHHHHCGGGG---GGHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----------hcCCCCCHHHHhcCcccc---cccCCHH
Confidence 233322222222222333444443221100 111212 234567888876543332 1235789
Q ss_pred HHHHHHHHcCcceEE
Q 025051 218 CIVAILIHKNLVKGY 232 (258)
Q Consensus 218 ~ila~LI~~G~IkGy 232 (258)
-++-.|+.+|+|+-.
T Consensus 258 ~iL~~Lv~k~lI~~~ 272 (290)
T 3c18_A 258 SLVDFFIRKGLIRIS 272 (290)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEe
Confidence 999999999999753
No 158
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=70.72 E-value=12 Score=33.43 Aligned_cols=67 Identities=6% Similarity=-0.132 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
....+-..|++.|+++.+...++..-.. -|. ....++..|.+++..++|++|.+.+..|+...|...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 93 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPN--------EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS 93 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh-CCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH
Confidence 3456677899999999999888654432 132 246778899999999999999999999999877643
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=70.57 E-value=19 Score=26.58 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-Hhhcc------CCCCCCCC--CccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIR-SIETA------RIFDFEEF--PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 90 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~-~i~~~------~~p~~~~~--~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 90 (258)
.....-..||+.|+++.+-..+. +++.. ..|.-... ........++..|.+++..++|++|..++..|+..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34456678899999999987763 33320 00110000 02335567788999999999999999999999998
Q ss_pred cCcc
Q 025051 91 CNPQ 94 (258)
Q Consensus 91 c~~~ 94 (258)
.|..
T Consensus 93 ~p~~ 96 (162)
T 3rkv_A 93 EETN 96 (162)
T ss_dssp STTC
T ss_pred CCcc
Confidence 7754
No 160
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=69.96 E-value=20 Score=32.91 Aligned_cols=66 Identities=11% Similarity=-0.048 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....+-.+|++.++++.+...++..-.. .|. ....++..|.++...+++++|.+++++|+...|.+
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLAL-HPG--------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 3455677889999999999888554331 122 24567889999999999999999999999987765
No 161
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=69.23 E-value=21 Score=32.26 Aligned_cols=64 Identities=8% Similarity=-0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
+.+..+|.+.|+++.+..+++.+-.. .|. .+.-++..|..+...+++++|.+.|..+....|.+
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTM-DPQ--------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 34556666666666666666443221 111 12233456666666666666666666666655543
No 162
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=68.17 E-value=4.7 Score=31.57 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.4
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 59 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 59 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
+.-.++||+|.-|...++|.+|..++..++..=|.+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 467799999999999999999999999999987743
No 163
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=68.13 E-value=20 Score=32.95 Aligned_cols=66 Identities=9% Similarity=-0.024 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
....+-.+|.+.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.++.|+...|..
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDA-APE--------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3456677899999999999887543321 132 24466889999999999999999999999987754
No 164
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=67.46 E-value=11 Score=25.50 Aligned_cols=33 Identities=6% Similarity=-0.133 Sum_probs=29.0
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 62 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 62 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.-++..|..++..++|++|.+.+..|+...|.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 37 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN 37 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 446778999999999999999999999987754
No 165
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.09 E-value=7.3 Score=28.04 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=24.8
Q ss_pred hhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 67 TGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 67 ~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.|.-.+.+++++.|-.||..|+..|+..
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 6777788899999999999999999963
No 166
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=66.39 E-value=10 Score=26.33 Aligned_cols=33 Identities=24% Similarity=0.091 Sum_probs=29.2
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 62 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 62 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..++..|.+++..++|++|...+..|+...|..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 467889999999999999999999999977654
No 167
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=66.29 E-value=23 Score=31.30 Aligned_cols=66 Identities=5% Similarity=-0.147 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcC-hHHHHHHHHHHHHhcCccC
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNEN-FPAADQKLSYALINCNPQS 95 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~-~~~A~~~L~~A~~~c~~~~ 95 (258)
.+.+-.+|.+.++++.+-..++..-.. .|. ..+.+++.|.++...++ +++|..++..|+..-|.+.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l-~P~--------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIEL-NAA--------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh-Ccc--------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 344556678889988888777443221 132 34456778888877775 8888888888888776543
No 168
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=65.88 E-value=20 Score=32.45 Aligned_cols=66 Identities=12% Similarity=0.003 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhh---------cChHHHHHHHHHHHHhc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN---------ENFPAADQKLSYALINC 91 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~---------~~~~~A~~~L~~A~~~c 91 (258)
.+.+-.+|++.|+++.|...++..-.. .|. ...++..|.++... ++|++|.+.+.+|+...
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTH-------CKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT-------CCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 345667788888888888777543221 133 36778899999999 99999999999999988
Q ss_pred CccCh
Q 025051 92 NPQSE 96 (258)
Q Consensus 92 ~~~~~ 96 (258)
|.+..
T Consensus 210 p~~~~ 214 (474)
T 4abn_A 210 VLDGR 214 (474)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 86543
No 169
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=65.09 E-value=9.8 Score=34.52 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 21 TCQLFKIYFKLGTV-HLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 21 ~n~l~kiyf~l~~~-~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
...+-++|+..+++ +.|...++. ++.. |. ....++..|.++...+++++|.+++..|+...|.
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLE--PE--------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34566788999999 999888754 4321 32 2346788999999999999999999999998775
No 170
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=65.07 E-value=29 Score=30.71 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=13.5
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 65 YYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 65 YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
+..|.++...+++++|.+.+..|+...|
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444555555555555554443
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=64.13 E-value=34 Score=30.74 Aligned_cols=77 Identities=9% Similarity=-0.125 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCC-------ccchhhhhhhhhHHhhhhcChHHHHHHHHHH
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYA 87 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~-~i~~~~~p~~~~~~-------~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A 87 (258)
........+-..|++.++++.|...++ +++.. |....+. .......++..|.+++..++|++|..++..|
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344455667788999999999998874 44421 3211000 1123567788999999999999999999999
Q ss_pred HHhcCcc
Q 025051 88 LINCNPQ 94 (258)
Q Consensus 88 ~~~c~~~ 94 (258)
+..-|..
T Consensus 344 l~~~p~~ 350 (457)
T 1kt0_A 344 LGLDSAN 350 (457)
T ss_dssp HHHSTTC
T ss_pred HhcCCcc
Confidence 9987754
No 172
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=63.88 E-value=24 Score=34.35 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
.+.+-.+|.++|+++.+...++ +++-. |. ....++.+|.++...+++++|.+++++|+..-|...
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~--------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~ 111 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRIS--PT--------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3456778999999999998774 44432 33 234568899999999999999999999999877653
No 173
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=63.35 E-value=8.4 Score=30.64 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCChhhHHHHHH---HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 22 CQLFKIYFKLGTVHLCRSVIR---SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~---~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
-.-.+-.+..+.++.+..+-+ .+... -| +.++..+..+-++|.|-.++-+++|..|...+.+|+..+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~--~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NP--ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-ST--TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Cc--ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 344566667777777765443 33321 12 2356788888999999999999999999999999999764
No 174
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=63.05 E-value=5.2 Score=28.02 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=37.6
Q ss_pred hhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 34 VHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 34 ~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.+.+..+++ +++.. | . -++=.++.|..++.+++|++|...++.++..-|+
T Consensus 25 ~~~A~~~l~~AL~~d--p------~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLE--P------Y--NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHC--T------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHC--c------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 567776664 44431 2 2 3444678899999999999999999999998776
No 175
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=62.15 E-value=32 Score=30.38 Aligned_cols=66 Identities=11% Similarity=-0.098 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCC-hhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccC
Q 025051 20 LTCQLFKIYFKLGT-VHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 20 ~~n~l~kiyf~l~~-~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 95 (258)
..+.+-.+|.++|+ ++.+-..++. ++.. |. ....+++.|.++...++|++|...+..|+..-|.+.
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~--------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PK--------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence 34556678889997 9988877744 3321 32 234578899999999999999999999999877654
No 176
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.48 E-value=75 Score=26.95 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=82.8
Q ss_pred HHHHHhcCChhhHHHHHHHhhcc--C---C-CCCCCCCc---cch---hhhhhhhhHHhhhhcChHHHHHHHHHHHHhc-
Q 025051 25 FKIYFKLGTVHLCRSVIRSIETA--R---I-FDFEEFPK---RDK---VTYMYYTGRLEVFNENFPAADQKLSYALINC- 91 (258)
Q Consensus 25 ~kiyf~l~~~~~~~~l~~~i~~~--~---~-p~~~~~~~---~~~---v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c- 91 (258)
++.-|..++++.|.++++.++.. . + |+.+.-+. .+. ..-+-..+++.+-.+|+.+=..+..+=-..+
T Consensus 11 l~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~ 90 (274)
T 4b4t_T 11 LSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYF 90 (274)
T ss_dssp --------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45566778999999999888753 1 1 22111111 111 1234556777777777654333333322222
Q ss_pred --Ccc--ChHHHHHHHHHHHHHHhhcCCCCChhh-hhhcc-----c--ccc----HHHHHHHHhCCHHHHHHHHHHcHH-
Q 025051 92 --NPQ--SEANIRMILKYLIPVKLSIGILPKDWL-LEKYN-----L--VEY----SNIVQALRRGDLRLLRHALEEHED- 154 (258)
Q Consensus 92 --~~~--~~~~~~~IL~~LIp~~Ll~G~~P~~~l-l~~~~-----l--~~y----~~L~~av~~Gdl~~f~~~l~~~~~- 154 (258)
... ..+++-.++-|-+..-|..|+.+.+.. ++..+ + .+| ..+-+|+..||..+|=+.+.+...
T Consensus 91 d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p 170 (274)
T 4b4t_T 91 SNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQN 170 (274)
T ss_dssp TTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTC
T ss_pred hhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCC
Confidence 111 235677776555544444577666543 22111 1 233 567899999999998777765321
Q ss_pred -HHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCc
Q 025051 155 -QFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNL 228 (258)
Q Consensus 155 -~f~~~glylll~~l~~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~ 228 (258)
.....=+-.++.+.|.-..+.+.| . +.+||++.+...|.+. +.+|+...+. ..|+
T Consensus 171 ~~~~~~f~d~l~~~iR~~a~~~i~k----a--------Y~~i~l~~~~~~L~F~----s~~e~~~F~~---~~gW 226 (274)
T 4b4t_T 171 ISEFDSFTDILKSAIRDEIAKNTEL----S--------YDFLPLSNIKALLFFN----NEKETEKFAL---ERNW 226 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH----H--------CSSCCHHHHHHHHTCC----SHHHHHHHHH---HTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----H--------HhhcCHHHHHHHhCCC----CHHHHHHHHH---HcCC
Confidence 111111123556777766655544 2 2679999999999863 6777766654 4565
No 177
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.08 E-value=45 Score=27.47 Aligned_cols=75 Identities=8% Similarity=-0.089 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhc-CChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 17 ALYLTCQLFKIYFKL-GTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 17 ~~~~~n~l~kiyf~l-~~~~~~~~l~-~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.....+.+-.+|.+. |+++.+-..+ ++++-. |... ........+.-.|.++...++|++|.+.+..|...+|..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 344556777889985 9999998776 444421 2111 111223445678999999999999999999999988765
Q ss_pred C
Q 025051 95 S 95 (258)
Q Consensus 95 ~ 95 (258)
.
T Consensus 192 ~ 192 (292)
T 1qqe_A 192 R 192 (292)
T ss_dssp T
T ss_pred C
Confidence 4
No 178
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=59.56 E-value=13 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=29.7
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcce
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 230 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 230 (258)
-.|.++.|++.+. ++.|||-.+|.+|=.+|+|+
T Consensus 24 GildI~~~a~kyg-----V~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYG-----VEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHC-----CCHHHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhC-----CCHHHHHHHHHHHHHCCCee
Confidence 4688899998887 79999999999999999986
No 179
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=59.35 E-value=12 Score=28.36 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=32.8
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 58 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 58 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
.++-.+.||+|.-+.-.++|.+|...+...+..=|.+
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3577899999999999999999999999999977643
No 180
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=59.30 E-value=17 Score=28.11 Aligned_cols=37 Identities=3% Similarity=0.083 Sum_probs=33.4
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
...++|++++++.+. +|...+-.-+..|...|+|+||
T Consensus 14 ~~~~~s~~~la~~lg-----~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 14 EDSTLAVADLAKKVG-----LSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp TCSCSCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSSCCC
T ss_pred HCCCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeec
Confidence 346899999999997 7899999999999999999975
No 181
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=58.39 E-value=13 Score=25.24 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEee
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFA 234 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~ 234 (258)
.+++..+|+..+. ++...|...|.+|..+|+|.+.-+
T Consensus 30 ~~~t~~eLA~~Lg-----vs~~tV~~~L~~L~~~G~I~~~g~ 66 (77)
T 1qgp_A 30 KATTAHDLSGKLG-----TPKKEINRVLYSLAKKGKLQKEAG 66 (77)
T ss_dssp SCEEHHHHHHHHC-----CCHHHHHHHHHHHHHHTSEEEECS
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEecCC
Confidence 4799999999997 789999999999999999988643
No 182
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=57.09 E-value=21 Score=24.95 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 176 LFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 176 L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
-++.+|... +..+...|+..++..++...|...+.++++.++..+=.+| .|.|+.+
T Consensus 33 ~l~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~--dg~i~~~ 88 (107)
T 2d58_A 33 GFKEKYMEF---DLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGS--GETFSYP 88 (107)
T ss_dssp HHHHHHTTS---CCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSS--SSEECHH
T ss_pred HHHHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCeEcHH
Confidence 345566554 2234568999999999988787789999999888663333 4666654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=56.67 E-value=53 Score=28.65 Aligned_cols=79 Identities=8% Similarity=-0.081 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCC---CCCC--CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIF---DFEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 88 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~-~~p---~~~~--~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 88 (258)
........+-..|++.++++.|...++. ++-. ..| .... -........++..|.+++..++|++|.++++.|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3344456677899999999999877743 3310 000 0000 0112345667889999999999999999999999
Q ss_pred HhcCcc
Q 025051 89 INCNPQ 94 (258)
Q Consensus 89 ~~c~~~ 94 (258)
...|..
T Consensus 301 ~~~p~~ 306 (370)
T 1ihg_A 301 EIDPSN 306 (370)
T ss_dssp TTCTTC
T ss_pred HhCchh
Confidence 977644
No 184
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=56.57 E-value=31 Score=21.13 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=31.4
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
+.-.|+.+++..++...|...+.++++.++..+=.+| .|.|+.
T Consensus 14 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~--dg~i~~ 56 (67)
T 1tiz_A 14 KDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDG--NGELNA 56 (67)
T ss_dssp SSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSS--SSEECH
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCC--CCcCcH
Confidence 3567999999999987777788999998887552222 455554
No 185
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=56.18 E-value=48 Score=27.94 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 025051 17 ALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 17 ~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 93 (258)
.....+.+-.+|...|+++.+...+.. ++.. +... + .+.+..++..|+++...+++++|...+..|....+.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~--~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVL--SSYQ--P-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTSC--G-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hccC--c-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 444556678899999999999988854 3321 2211 1 124455678999999999999999999999987554
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=54.23 E-value=36 Score=26.55 Aligned_cols=71 Identities=8% Similarity=-0.051 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHH-HHhhc--cCCCCCCCCCccchhhhh----hhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVI-RSIET--ARIFDFEEFPKRDKVTYM----YYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~-~~i~~--~~~p~~~~~~~~~~v~y~----YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
.-+.+-..+.++|+++.+-... ++|+- ... +++ | +...-+ |..|..+.-.+++++|.+++..|+..-|
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~-e~~--p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRG-ELN--Q--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC-CTT--S--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-cCC--C--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4455667889999999888665 44442 000 001 1 244455 8899999999999999999999999988
Q ss_pred ccC
Q 025051 93 PQS 95 (258)
Q Consensus 93 ~~~ 95 (258)
.+.
T Consensus 134 ~d~ 136 (159)
T 2hr2_A 134 ERK 136 (159)
T ss_dssp HCC
T ss_pred CcH
Confidence 665
No 187
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=54.18 E-value=44 Score=24.99 Aligned_cols=28 Identities=11% Similarity=-0.297 Sum_probs=22.8
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHH
Q 025051 62 TYMYYTGRLEVFNENFPAADQKLSYALI 89 (258)
Q Consensus 62 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 89 (258)
..+|..|.++...+++++|...|..++.
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4567788888888888888888888876
No 188
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=53.88 E-value=20 Score=26.85 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.++|.+++++.+. ++...+-..+..|..+|+|+++
T Consensus 18 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 18 SRLSMRELGRKIK-----LSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp SCCCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEE
Confidence 5799999999997 7899999999999999999886
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=53.82 E-value=24 Score=32.08 Aligned_cols=59 Identities=15% Similarity=-0.001 Sum_probs=45.9
Q ss_pred HHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 26 KIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 26 kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..|++.++++.|...++. ++.. |. ....++..|.++...++|++|.+.+++|+..-|..
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--Cc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 356788999999887743 4421 32 25567889999999999999999999999987654
No 190
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=53.18 E-value=12 Score=32.90 Aligned_cols=70 Identities=7% Similarity=-0.043 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHH-HHhhcc--CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 20 LTCQLFKIYFKLGTVHLCRSVI-RSIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 20 ~~n~l~kiyf~l~~~~~~~~l~-~~i~~~--~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
+.|.+-.+|+..|+++.|-..+ ++++-. ..+. ... ...+.-+.-.|.+|...++|++|...+..|...++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--~~~-~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--QAE-IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--GCT-TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--ccc-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 4478889999999999997666 444421 0010 111 12233345689999999999999999999988654
No 191
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=52.35 E-value=53 Score=27.30 Aligned_cols=25 Identities=0% Similarity=-0.186 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH
Q 025051 19 YLTCQLFKIYFKLGTVHLCRSVIRS 43 (258)
Q Consensus 19 ~~~n~l~kiyf~l~~~~~~~~l~~~ 43 (258)
.....+...|...++.+.+-..++.
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3444455666666666666666554
No 192
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=51.98 E-value=22 Score=23.26 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 231 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 231 (258)
..++.++|+..+. ++...|..++..|...|+|..
T Consensus 24 ~~~s~~eLA~~lg-----lsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQ-----VPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHC-----SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEec
Confidence 3589999999997 789999999999999999853
No 193
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.32 E-value=37 Score=26.19 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
+.+|.... ..+.-.|+.+++..++...|..++.+|++.++... .+| .|.|+.+.
T Consensus 87 ~~aF~~fD---~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~-dd~--dG~I~~~E 140 (176)
T 2lhi_A 87 LEAFKVFD---KNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-SDG--SGEINIQQ 140 (176)
T ss_dssp HHHHHHHC---SSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH-HTT--SSCBCTTH
T ss_pred HHHHHHhC---CCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh-cCC--CCeEeHHH
Confidence 44455542 12456799999999998878889999999998765 566 78998875
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=51.16 E-value=27 Score=23.04 Aligned_cols=30 Identities=17% Similarity=-0.096 Sum_probs=26.5
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 65 YYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 65 YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
|-.|..++..++|++|.+.+..|+...|.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 567889999999999999999999987754
No 195
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=50.72 E-value=21 Score=26.92 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.++|++++++.+. +|...+-..+..|...|+|+++
T Consensus 21 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 21 ARTAYAELAKQFG-----VSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp TTSCHHHHHHHHT-----SCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHcCCcceE
Confidence 5799999999997 7899999999999999999985
No 196
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=50.51 E-value=23 Score=27.07 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEe
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 233 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 233 (258)
.++|.+++++.+. ++...+-..+..|...|+|+++-
T Consensus 23 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 23 GRLTNVELSERVA-----LSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEeeec
Confidence 4689999999997 78999999999999999998753
No 197
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=49.95 E-value=60 Score=25.90 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh----hcChHHHHHHHHHHHHhc
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALINC 91 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~----~~~~~~A~~~L~~A~~~c 91 (258)
..+-.+|++.++++.+...++..-. |. ...-.|..|.++.. .+++++|.+++..|...-
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~---~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD---LK--------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH---CC--------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 3455678888898888877754332 11 11245678888887 888888888888888763
No 198
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=48.01 E-value=50 Score=22.57 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCceEEEEecCCCC
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPF 248 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~~lVlsk~~pF 248 (258)
.+++..+|+..+. ++...|...|.+|..+|+|.=.-...-...+.+..++|
T Consensus 26 ~~~t~~eLA~~Lg-----vsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 26 KATTAHDLSGKLG-----TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQAW 76 (81)
T ss_dssp CCBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC------
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHhc
Confidence 4799999999997 78999999999999999995322222344444444443
No 199
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=47.77 E-value=10 Score=28.70 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=47.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
.+-..|++.|+++.+...++..-.. -|. ....++-.|.+++..+++++|...+..+...-|
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE-LQS--------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH-HHT--------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 4556788999999999888643221 122 245678899999999999999999999988776
No 200
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=47.74 E-value=27 Score=27.26 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=32.5
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEe
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 233 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 233 (258)
.++|.+++++.+. ++...+-..+..|..+|+|+++-
T Consensus 30 ~~~s~~eLA~~lg-----lS~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 30 ARLTISELSEQLK-----KPESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEeec
Confidence 4799999999997 78999999999999999998763
No 201
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=46.60 E-value=33 Score=24.80 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=38.2
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++.+|... +..+...|+.+++..++.-.|..++.++++.++..+ +| .|.|+.+
T Consensus 86 l~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~--dg~i~~~ 138 (146)
T 2qac_A 86 LIKMFAHF---DNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SS--EDNIDYK 138 (146)
T ss_dssp HHHHHHTT---CTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CS--SSEEEHH
T ss_pred HHHHHHHh---CCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CC--CCcCcHH
Confidence 34455554 223456799999999998778778999999999887 43 5666643
No 202
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=46.45 E-value=52 Score=21.27 Aligned_cols=55 Identities=13% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++.+|.... ..+...|+..++..++...|...+.++++.++..+=.+| .|.|+.+
T Consensus 16 l~~~F~~~D---~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~--~g~i~~~ 70 (85)
T 2ktg_A 16 YKEAFQLFD---KDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN--SGKFDQE 70 (85)
T ss_dssp HHHHHHHTC---TTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSS--CSEEEHH
T ss_pred HHHHHHHHC---CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcHH
Confidence 355565542 234567999999999987777789999998887653222 4566543
No 203
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=45.77 E-value=14 Score=28.09 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=28.9
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 231 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 231 (258)
.-.+.+.++..+. +|..+|..++.+|+.+|+|.=
T Consensus 50 ~~ps~~~LA~~~~-----~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMS-----ISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSS-----SCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEE
Confidence 4467788888876 799999999999999999963
No 204
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=45.75 E-value=23 Score=26.62 Aligned_cols=35 Identities=6% Similarity=0.199 Sum_probs=32.0
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.++|.+++++.+. ++...+-..+..|..+|+|+++
T Consensus 22 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 22 SRLTYRELADILN-----TTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp TTCCHHHHHHHTT-----SCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999987 7899999999999999999875
No 205
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=45.70 E-value=51 Score=21.79 Aligned_cols=54 Identities=11% Similarity=0.216 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
++.+|..... .+.-.|+..++..++...|...+.++++.++..+=.+| .|.|+.
T Consensus 22 l~~~F~~~D~---d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~--dg~i~~ 75 (90)
T 1avs_A 22 FKAAFDMFDA---DGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG--SGTIDF 75 (90)
T ss_dssp HHHHHHHHCT---TCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTC--CSSEEH
T ss_pred HHHHHHHHCC---CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCeEeH
Confidence 3555555421 24467999999999987777788999998877553232 445543
No 206
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=44.95 E-value=38 Score=21.47 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
++.+|.... ..+.-.|+..++..++...|...+.++++.++..+=.+| .|+|+.
T Consensus 9 l~~~F~~~D---~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~--~g~i~~ 62 (77)
T 2joj_A 9 IKEAFDLFD---TNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREG--NGYIGF 62 (77)
T ss_dssp HHHHHHHHC---CSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSS--SSEEEH
T ss_pred HHHHHHHhC---CCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCC--CCcCcH
Confidence 355555542 123457999999999987777778888888877542222 455554
No 207
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=44.23 E-value=62 Score=28.08 Aligned_cols=70 Identities=10% Similarity=-0.055 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccCh
Q 025051 18 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 96 (258)
Q Consensus 18 ~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 96 (258)
..++..+.+++...++++.+...++..-.. -|. .....+..|.++...+++.+|.+.+..|+...|....
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEK-APG--------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHH-CSS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-Ccc--------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 344445555666667777777776433221 121 2234578999999999999999999999998876543
No 208
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=43.92 E-value=26 Score=26.26 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.+++.+++++.+. ++...+-..+..|...|+|+++
T Consensus 16 ~~~~~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 16 AKYSLDEIAREIR-----IPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp TTSCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEEEE
Confidence 5799999999997 7899999999999999999885
No 209
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=43.51 E-value=30 Score=24.27 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEe
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 233 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 233 (258)
.+++++++++.|. +|.+-|.-.|..|..+|+|+=.-
T Consensus 15 g~vsv~eLA~~l~-----VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 15 GRMEAKQLSARLQ-----TPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp CSEEHHHHHHHTT-----CCHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEe
Confidence 5789999999987 79999999999999999997654
No 210
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=43.22 E-value=31 Score=23.45 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=31.2
Q ss_pred ccccHHHHHHHHHhc---cCC---CCHHHHHHHHHHHHHcCcce
Q 025051 193 HQMKLDVIVKALKWL---EMD---MDVDEVECIVAILIHKNLVK 230 (258)
Q Consensus 193 ~~i~l~~i~~al~~~---~~~---~~~~evE~ila~LI~~G~Ik 230 (258)
..+|++.|+..++.. |.+ +|.+|++..+..++.+|.+-
T Consensus 21 ~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 21 GAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp CSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 469999999998864 222 57899999999999999764
No 211
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=43.21 E-value=30 Score=26.37 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=32.0
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 58 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 58 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
..+-.|.||++.=+.-.++|.+|.......+..-|.+
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4577899999999999999999999999999877744
No 212
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=42.94 E-value=61 Score=21.02 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++.+|.... ..+...|+.+++..++...| ..+.++++.++..+=.+| .|+|+.+
T Consensus 13 l~~~F~~~D---~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~--dg~i~~~ 66 (86)
T 2opo_A 13 RERIFKRFD---TNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDG--DGFISFD 66 (86)
T ss_dssp HHHHHHHHC---TTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTC--SSEECHH
T ss_pred HHHHHHHHC---CCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCC--CCcCcHH
Confidence 355555542 12456799999999998777 788999998887653333 4556543
No 213
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.42 E-value=1e+02 Score=22.80 Aligned_cols=87 Identities=16% Similarity=0.322 Sum_probs=57.3
Q ss_pred HHHHhCCHHHHHHHHHHc-----HHHHHHhcHHHHHHhh--H-HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHh
Q 025051 135 QALRRGDLRLLRHALEEH-----EDQFLRSGVYLVLEKL--E-LQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 206 (258)
Q Consensus 135 ~av~~Gdl~~f~~~l~~~-----~~~f~~~glylll~~l--~-~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~ 206 (258)
+-+..||+...-+++++. -..|++..+-..+++- + .-..-.|+...+. ...|+-+++..++..
T Consensus 16 EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~---------~~~is~~q~~~Gf~~ 86 (129)
T 2nsz_A 16 EYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---------SSTITIDQMKRGYER 86 (129)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---------TTCSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---------CCCcCHHHHHHHHHH
Confidence 456779999999998873 3457778888888753 1 2223345554432 256899999888763
Q ss_pred cc---------CCCCHHHHHHHHHHHHHcCcce
Q 025051 207 LE---------MDMDVDEVECIVAILIHKNLVK 230 (258)
Q Consensus 207 ~~---------~~~~~~evE~ila~LI~~G~Ik 230 (258)
-- .+--.+-+..+++.+|.+|.|.
T Consensus 87 v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 87 IYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHhhChHhhcCccchHHHHHHHHHHHHHCCCCC
Confidence 21 1123366788999999998874
No 214
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=42.28 E-value=38 Score=25.38 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEe
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 233 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 233 (258)
.+++++++++.+. ++...+-..+..|...|+|+++-
T Consensus 20 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 20 GRATLSELATRAG-----LSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEE
Confidence 4689999999997 78999999999999999998764
No 215
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=41.89 E-value=48 Score=21.12 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
+...|+.+++..++...| ..+.++++.++..+=.+| .|+|+.
T Consensus 16 ~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~--dg~i~~ 57 (78)
T 1k9u_A 16 GDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDG--DGFIDF 57 (78)
T ss_dssp CSSEECHHHHHHHHHHHH-TCCHHHHHHHHHHHCTTC--SSSEEH
T ss_pred CCCcCcHHHHHHHHHHhC-CCCHHHHHHHHHHhCCCC--CCeEcH
Confidence 456799999998887767 778888888877553232 444543
No 216
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=41.56 E-value=31 Score=23.48 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 231 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 231 (258)
.+++++++++.|. +|.+-+.-.+..|..+|+|+=
T Consensus 15 g~vsv~eLa~~l~-----VS~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 15 GRMEAAQISQTLN-----TPQPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp CSBCHHHHHHHTT-----CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCcHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEE
Confidence 5799999999987 799999999999999999854
No 217
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=41.16 E-value=21 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCcceEEe
Q 025051 211 MDVDEVECIVAILIHKNLVKGYF 233 (258)
Q Consensus 211 ~~~~evE~ila~LI~~G~IkGyI 233 (258)
++.+....++..|.++|+|+|.-
T Consensus 28 Ise~~~~~il~~L~d~GyI~Gv~ 50 (102)
T 2hgc_A 28 VTEDQFDDAVNFLKREGYIIGVH 50 (102)
T ss_dssp SCHHHHHHHHHHHHHHTSEECCE
T ss_pred CCHHHHHHHHHHHHHCCCccceE
Confidence 78999999999999999999953
No 218
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=40.75 E-value=41 Score=27.82 Aligned_cols=62 Identities=5% Similarity=-0.143 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
..+-..+++.|+++.+...++..-.. -|. ....++-+|.+++..+++++|.+.|..+...-|
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQL-SNQ--------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-TTS--------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh-CCc--------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 34667788899999999888654332 132 234578889999999999999999999888766
No 219
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=40.38 E-value=39 Score=23.67 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
|.+|.... ..+.-.|+.+++..+++..|..++.+|++.++..+=.+| .|.|+.
T Consensus 39 ~~~F~~~D---~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~--dG~I~~ 91 (100)
T 2lv7_A 39 REAFKVFD---RDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDG--DGQVDF 91 (100)
T ss_dssp HHHHHHTC---SSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSC--SSSBCH
T ss_pred HHHHHHHc---CCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCC--CCeEeH
Confidence 45555542 234567999999999988888888999998887653333 444443
No 220
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=39.90 E-value=1.2e+02 Score=24.99 Aligned_cols=52 Identities=6% Similarity=-0.114 Sum_probs=34.2
Q ss_pred hcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 30 KLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 30 ~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
..|+++.+..++.. ++. .|. ...+..-.|.++...+++++|...|+.|+..|
T Consensus 181 ~~~~~~~A~~~~~~al~~--~p~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKK--YGD--------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp TSCCHHHHHHHHHHHHHH--HTT--------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HcCCHHHHHHHHHHHHHh--CCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 36888888877743 332 132 13344556677777788888888888888864
No 221
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=39.28 E-value=66 Score=25.22 Aligned_cols=75 Identities=11% Similarity=-0.006 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 12 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 12 ~Kk~~~~~~~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
.+.|--|...-.-+-.+..+++.+.|+++.+..-+- -..| ....---+..-+.+++..+|..-|..|+..|
T Consensus 54 ~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~----hKkF-----AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 54 YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN----CKKF-----AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH----CTTB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 444544444444455667889999999999876431 1112 1112222445567899999999999999999
Q ss_pred CccC
Q 025051 92 NPQS 95 (258)
Q Consensus 92 ~~~~ 95 (258)
|...
T Consensus 125 ~k~~ 128 (161)
T 4h7y_A 125 AVPL 128 (161)
T ss_dssp CBCH
T ss_pred CCcH
Confidence 9653
No 222
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=39.20 E-value=26 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=32.0
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.++|++++++.+. ++...+-..+..|...|+|+++
T Consensus 20 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 20 GKAPLREISKITG-----LAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp TTCCHHHHHHHHC-----SCHHHHHHHHHHHHHHTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEE
Confidence 5799999999997 7899999999999999999875
No 223
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=39.09 E-value=30 Score=26.98 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.++|++++++.+. ++...+-..+..|...|+|+++
T Consensus 40 ~~~s~~eLA~~lg-----lS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 40 GKAPLREISKITG-----LAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEee
Confidence 5799999999997 7899999999999999999885
No 224
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.63 E-value=64 Score=28.94 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=40.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 23 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 23 ~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
.+.++|++.|+++.|-..+..+.... ....+.+....-.=++++..+||..|...+..|-..-.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~------~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKA------ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHH------TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 45667777777777777776554321 12345666655566666777777777777777755443
No 225
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.06 E-value=69 Score=28.97 Aligned_cols=65 Identities=12% Similarity=0.248 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 88 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 88 (258)
.-.|.++|+..|++..|.+++..+...+ ....++.+.+.|.----|+++..+||.+|...+..|-
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et---~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVET---YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3568899999999999999998876421 2234678899999999999999999999999988864
No 226
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=38.00 E-value=1.3e+02 Score=23.29 Aligned_cols=78 Identities=17% Similarity=0.003 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhcc-CCCCCCCC-CccchhhhhhhhhHHhhhhcChHHHHHHHHHHHH
Q 025051 13 KRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETA-RIFDFEEF-PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 89 (258)
Q Consensus 13 Kk~~~~~~~n~l~kiyf~l~~~~~~~~l~-~~i~~~-~~p~~~~~-~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 89 (258)
|..+.-......-..+|+.|+++.+-... ++++-. +.|+-+.. ........++-.|..+.-.++|++|..++..|+.
T Consensus 6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555566677889999999998766 555532 12221100 0001223567788889999999999999999999
Q ss_pred h
Q 025051 90 N 90 (258)
Q Consensus 90 ~ 90 (258)
.
T Consensus 86 l 86 (159)
T 2hr2_A 86 Y 86 (159)
T ss_dssp H
T ss_pred h
Confidence 7
No 227
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=37.86 E-value=88 Score=22.09 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
++.+|... .+.+.-.|+.+++..++...|..++.++++.++..+= +| .|.|+.
T Consensus 81 ~~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~--dg~i~~ 133 (142)
T 2bl0_C 81 LRQAFRTF---DPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TE--KGQIRY 133 (142)
T ss_dssp HHHHHHHT---CCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CS--SSEECS
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CC--CCcEeH
Confidence 34555554 2234567999999999987777789999999988764 43 566654
No 228
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=37.73 E-value=52 Score=21.40 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
+.-.|+..++..++...|...+.++++.++..+=.+| .|+|+.
T Consensus 36 ~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~--~g~i~~ 78 (87)
T 1s6j_A 36 NSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDK--SGTIDY 78 (87)
T ss_dssp CSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTC--SSEECH
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 4567999999999988787789999999887653333 455554
No 229
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=36.98 E-value=77 Score=26.99 Aligned_cols=56 Identities=14% Similarity=-0.082 Sum_probs=30.5
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHH
Q 025051 27 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 89 (258)
Q Consensus 27 iyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 89 (258)
+|++.++++.+...+..... .| +......-+||+|..+...+++++|..+|++|..
T Consensus 144 l~~~~~r~~dA~~~l~~a~~--~~-----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGK--WP-----DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGG--CS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHhhc--cC-----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666666666666542111 11 0111122456677777777777777777776653
No 230
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=36.63 E-value=1.4e+02 Score=23.60 Aligned_cols=59 Identities=12% Similarity=-0.080 Sum_probs=32.5
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh----hcChHHHHHHHHHHHHh
Q 025051 21 TCQLFKIYFK----LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALIN 90 (258)
Q Consensus 21 ~n~l~kiyf~----l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~----~~~~~~A~~~L~~A~~~ 90 (258)
...+-.+|.+ .++++.+...++..-... ...-.+..|.++.. .+++++|.+++..|...
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 3445556666 777777776664322110 11223455666655 66666666666666654
No 231
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=36.23 E-value=34 Score=21.21 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
+...|+..++..++...|...+.++++.++..+=.+| .|.|+.+
T Consensus 19 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~ 62 (71)
T 2b1u_A 19 GDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQ--DGRVNYE 62 (71)
T ss_dssp SSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSS--SSEEETT
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcHH
Confidence 4567999999999987777789999988877542232 4566543
No 232
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=36.02 E-value=93 Score=21.77 Aligned_cols=39 Identities=3% Similarity=0.060 Sum_probs=33.8
Q ss_pred cccHHHHHHHH-HhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKAL-KWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al-~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.+++++++..+ . ++..-+-..|..|...|+|....+..+
T Consensus 27 ~~~~~eLa~~l~~-----is~~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 27 KKRTSELKRLMPN-----ITQKMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp CBCHHHHHHHCTT-----SCHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCCHHHHHHHhcC-----CCHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 47899999887 5 789999999999999999999887654
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=35.49 E-value=53 Score=25.32 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=31.7
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 59 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 59 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
++-.|.||++.=+.-.++|.+|.......+..=|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 467799999999999999999999999999976644
No 234
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=34.60 E-value=27 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceE
Q 025051 195 MKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 231 (258)
Q Consensus 195 i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 231 (258)
++.+.|+..+. +|..+|..++.+|+.+|+|.=
T Consensus 52 ps~~~LA~~l~-----~s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 52 PTPAELAERMT-----VSAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp CCHHHHHHTSS-----SCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEE
Confidence 68899988876 799999999999999999954
No 235
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=34.21 E-value=1.1e+02 Score=20.63 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=24.6
Q ss_pred CccccHHHHHHHHHh-----ccCCCCHHHHHHHHHHH
Q 025051 192 AHQMKLDVIVKALKW-----LEMDMDVDEVECIVAIL 223 (258)
Q Consensus 192 ~~~i~l~~i~~al~~-----~~~~~~~~evE~ila~L 223 (258)
...|+.+++..+++- .|...+.++++.++..+
T Consensus 25 ~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~ 61 (92)
T 3rm1_A 25 KHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61 (92)
T ss_dssp TTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHH
T ss_pred cCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHH
Confidence 348999999988876 55567888888887765
No 236
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=33.95 E-value=39 Score=24.83 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.+++++++++.+. ++...+-..+..|...|+|+++
T Consensus 17 ~~~~~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 17 ARTPFTEIAKKLG-----ISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHHTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEecc
Confidence 4689999999996 7899999999999999999876
No 237
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=33.88 E-value=80 Score=23.31 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++.+|... +..+...|+..++..++...|...+.++++.++..+=.+| .|.|+.+
T Consensus 50 l~~~F~~~---D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~--dg~I~~~ 104 (147)
T 1wy9_A 50 FKVKYMEF---DLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGS--EETFSYS 104 (147)
T ss_dssp HHHHHTTS---CCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSC--TTEECHH
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcEeHH
Confidence 45555554 2234567999999999987777788999998887653222 4555553
No 238
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=33.25 E-value=1.3e+02 Score=21.24 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=33.7
Q ss_pred cccHHHHHHHH-HhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKAL-KWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al-~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.+++.+++..+ . ++..-+-..|..|...|+|....+..+
T Consensus 35 ~~~~~eLa~~l~~-----is~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 35 TKRNGELMRALDG-----ITQRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp CBCHHHHHHHSTT-----CCHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCCHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 47899999987 5 789999999999999999999877654
No 239
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=32.64 E-value=84 Score=22.61 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
+.+|.... ..+.-.|+.+++..++...|..++.++++.++..+=.+| .|.|+.
T Consensus 82 ~~~F~~~D---~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~--dG~I~~ 134 (143)
T 2obh_A 82 LKAFKLFD---DDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDG--DGEVSE 134 (143)
T ss_dssp HHHHHHHC---TTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTS--SSSBCH
T ss_pred HHHHHHhC---CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcEeH
Confidence 44555542 124457999999999887777789999999887653333 455543
No 240
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=32.57 E-value=1e+02 Score=21.71 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=30.5
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHH---HHcCcceEEeecC
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL---IHKNLVKGYFAHK 236 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~L---I~~G~IkGyI~~~ 236 (258)
+...|+.+++..++...|...+.++++.++..+ =.+| |.|+..
T Consensus 21 ~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~---g~i~~~ 66 (149)
T 2mys_C 21 GDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA---AAITFE 66 (149)
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC---CcCcHH
Confidence 345789999988887767777888888877655 2333 666654
No 241
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=31.27 E-value=1.2e+02 Score=20.35 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=26.6
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 223 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~L 223 (258)
+.-.|+.+++..++...|...+.++++.++..+
T Consensus 42 ~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 42 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp CCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 345799999999988777778899999887755
No 242
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=30.87 E-value=2.8e+02 Score=24.43 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCccChHHHHHHHHHHHHHH--hhcCCCCCh-hhhhhccccc-cHHHHHHHHhCCHHHHHHHH
Q 025051 78 PAADQKLSYALINCNPQSEANIRMILKYLIPVK--LSIGILPKD-WLLEKYNLVE-YSNIVQALRRGDLRLLRHAL 149 (258)
Q Consensus 78 ~~A~~~L~~A~~~c~~~~~~~~~~IL~~LIp~~--Ll~G~~P~~-~ll~~~~l~~-y~~L~~av~~Gdl~~f~~~l 149 (258)
..|..|+...+-|.=.++.+..-++|..|+..+ +....+.+. ..+.+. -.. |..|..+-+.||+..|-..+
T Consensus 187 ~aai~H~~f~~IHPF~DGNGR~~Rll~~l~L~~~g~~~~~~~~ls~~i~~~-~~~Yy~~L~~~~~~~d~~~~i~f~ 261 (373)
T 3eqx_A 187 KMAMAHYQFEAIHPFIDGNGRTGRVLNILYLIDQQLLSAPILYLSRYIVAH-KQDYYRLLLNVTTQQEWQPWIIFI 261 (373)
T ss_dssp HHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHTTSCSSSCCCTHHHHHHT-HHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHhhccCCCchHHHHH
Confidence 577778888888877788777777766665543 222222221 122221 234 45666777889987765543
No 243
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=30.64 E-value=1.2e+02 Score=21.88 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEee
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFA 234 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~ 234 (258)
++.+|.... ..+...|+..++..++.-.|..++.++++.++..+=.+| .|.|+
T Consensus 98 ~~~~F~~~D---~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~--dg~i~ 150 (162)
T 1top_A 98 LANCFRIFD---KNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNN--DGRID 150 (162)
T ss_dssp HHHHHHHHC---TTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTC--SSSBC
T ss_pred HHHHHHHhC---CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCc
Confidence 345555542 124567999999999987777789999999888763333 34444
No 244
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=30.56 E-value=77 Score=23.27 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
+.+|.... ..+...|+.+++..++...|..++.++++.++..+=.+| .|.|+.+
T Consensus 98 ~~~F~~~D---~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~--dg~I~~~ 151 (166)
T 2mys_B 98 MGAFKVLD---PDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDV--AGNVDYK 151 (166)
T ss_pred HHHHHHhC---CCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC--CCeEeHH
Confidence 44555542 124467999999999987777789999999887642222 5666654
No 245
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=30.07 E-value=37 Score=26.58 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=26.4
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 025051 62 TYMYYTGRLEVFNENFPAADQKLSYALINC 91 (258)
Q Consensus 62 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 91 (258)
.-.|.+|.++...+++++|.++|..|...-
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g 48 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG 48 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 456889999999999999999999998853
No 246
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=29.66 E-value=81 Score=21.29 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcce
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 230 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 230 (258)
..+..+|++++. +|..-|..-|..|-.+|+|+
T Consensus 24 ~psv~EIa~~lg-----vS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 24 PVKTRDIADAAG-----LSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp CEEHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHC-----CCHHHHHHHHHHHHHCCcEE
Confidence 478999999997 67888999999999999995
No 247
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.55 E-value=1.9e+02 Score=22.06 Aligned_cols=87 Identities=16% Similarity=0.343 Sum_probs=57.1
Q ss_pred HHHHhCCHHHHHHHHHHc-----HHHHHHhcHHHHHHhh--H-HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHh
Q 025051 135 QALRRGDLRLLRHALEEH-----EDQFLRSGVYLVLEKL--E-LQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 206 (258)
Q Consensus 135 ~av~~Gdl~~f~~~l~~~-----~~~f~~~glylll~~l--~-~~v~r~L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~ 206 (258)
+-+..||+...-+++++. -..|++..+-..+++- + .-..-.|+...+. ...|+-+++..++..
T Consensus 18 EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~---------~~~is~~q~~~Gf~~ 88 (152)
T 2ion_A 18 EYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---------SSTITIDQMKRGYER 88 (152)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---------TTCSCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---------CCCcCHHHHHHHHHH
Confidence 455779999999888873 3467778888888862 1 1222344444322 257899999888763
Q ss_pred c---------cCCCCHHHHHHHHHHHHHcCcce
Q 025051 207 L---------EMDMDVDEVECIVAILIHKNLVK 230 (258)
Q Consensus 207 ~---------~~~~~~~evE~ila~LI~~G~Ik 230 (258)
- ..+--.+-+..+++.+|.+|.|.
T Consensus 89 vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 89 IYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHhChHhccCccchHHHHHHHHHHHHHCCCCC
Confidence 2 11123467788999999999883
No 248
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.42 E-value=1.4e+02 Score=21.30 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCce
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSK 238 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~ 238 (258)
.++.++++..+. ++...+-.++..|...|+|.-.-+..++
T Consensus 47 ~~~~~~la~~l~-----~s~~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 47 PKRPGELSVLLG-----VAKSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp CBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCHHHHHHHHC-----CCchhHHHHHHHHHHCCCeeecCCCCCC
Confidence 478999999986 6899999999999999999987766543
No 249
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=29.00 E-value=1.2e+02 Score=19.74 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
++.+|.... ..+.-.|+..++..++...|..++.++++.++..+=.+| .|.|+.
T Consensus 11 l~~~F~~~D---~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~--dg~i~~ 64 (92)
T 2kn2_A 11 LKEAFKVFD---KDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDG--DGQVNY 64 (92)
T ss_dssp HHHHHHHHC---TTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSC--CSSEEH
T ss_pred HHHHHHHHC---CCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcEeH
Confidence 355555542 123457999999999887777788899888877542222 455554
No 250
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=28.85 E-value=1.3e+02 Score=20.14 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
.++..+++..+. ++...|-.++..|...|+|...-+.
T Consensus 34 ~~s~~ela~~l~-----is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 34 GMRVSEIARELD-----LSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp CBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEEEEeec
Confidence 488999999986 7899999999999999999886653
No 251
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=28.69 E-value=66 Score=27.39 Aligned_cols=77 Identities=13% Similarity=-0.083 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCC---------ccchhhhhhhhhHHhhhhcChHHHHHHHH
Q 025051 16 GALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFP---------KRDKVTYMYYTGRLEVFNENFPAADQKLS 85 (258)
Q Consensus 16 ~~~~~~n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~---------~~~~v~y~YY~G~~~~~~~~~~~A~~~L~ 85 (258)
........+-..|++.++++.+...++. ++. .|....+. .......++..|.+++..++|++|..++.
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455677889999999999987754 442 12210000 00011356789999999999999999999
Q ss_pred HHHHhcCcc
Q 025051 86 YALINCNPQ 94 (258)
Q Consensus 86 ~A~~~c~~~ 94 (258)
.|+...|.+
T Consensus 255 ~al~~~p~~ 263 (338)
T 2if4_A 255 IVLTEEEKN 263 (338)
T ss_dssp HHHHHCTTC
T ss_pred HHHHhCCCC
Confidence 999987754
No 252
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=28.28 E-value=1.4e+02 Score=21.33 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=21.2
Q ss_pred CccccHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 025051 192 AHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 223 (258)
Q Consensus 192 ~~~i~l~~i~~al~~~~~~~~~~evE~ila~L 223 (258)
...|+.+++..++...|...+.++++.++..+
T Consensus 37 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 68 (161)
T 3fwb_A 37 DGFLDYHELKVAMKALGFELPKREILDLIDEY 68 (161)
T ss_dssp SSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 45677777777777666566666666666544
No 253
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=28.28 E-value=36 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=27.3
Q ss_pred hhhhhhHHhhhh-----------cChHHHHHHHHHHHHhcCccC
Q 025051 63 YMYYTGRLEVFN-----------ENFPAADQKLSYALINCNPQS 95 (258)
Q Consensus 63 y~YY~G~~~~~~-----------~~~~~A~~~L~~A~~~c~~~~ 95 (258)
-+|.+|..|... ++|++|.++|++|+..-|...
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 357899998766 489999999999999877653
No 254
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=28.17 E-value=59 Score=23.77 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=32.8
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++-.|+.+++..++.-.|...+.++++.++..+=.+| .|.|+.+
T Consensus 96 ~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~--dG~I~~~ 139 (148)
T 2lmt_A 96 GDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDG--DGMINYE 139 (148)
T ss_dssp CSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSC--CSSEEHH
T ss_pred CcCcCcHHHHHHHHHHcCccccHHHHHHHHHHhCCCC--CCeEeHH
Confidence 4457999999999987788889999999887653333 4556543
No 255
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=28.09 E-value=73 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.++.+++++.+. ++...|-..+..|...|+|...
T Consensus 14 ~~s~~eLa~~lg-----vs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 14 GGKTAEIAEALA-----VTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCCHHHHHHHHT-----SCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEe
Confidence 489999999997 7899999999999999999854
No 256
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=27.76 E-value=28 Score=29.07 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcceEEeecCceEEEEe
Q 025051 209 MDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 243 (258)
Q Consensus 209 ~~~~~~evE~ila~LI~~G~IkGyI~~~~~~lVls 243 (258)
..++..|+|.+|.+|+.+|++.- + .+.+.++
T Consensus 131 k~l~~~eae~lL~~lv~~gWl~~--~--~g~~~l~ 161 (238)
T 3nw0_A 131 KKMRKKEAEQVLQKFVQNKWLIE--K--EGEFTLH 161 (238)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEE--E--TTEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhcchhh--h--CCEEEec
Confidence 34789999999999999999964 2 3555665
No 257
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=27.65 E-value=1.3e+02 Score=21.29 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.++.++++..+. ++...+-.++..|..+|+|.-.-+..+
T Consensus 52 ~~t~~ela~~l~-----~~~~tvs~~l~~L~~~glv~r~~~~~d 90 (140)
T 2nnn_A 52 PCPQNQLGRLTA-----MDAATIKGVVERLDKRGLIQRSADPDD 90 (140)
T ss_dssp SBCHHHHHHHTT-----CCHHHHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEEeeCCCCC
Confidence 478899998876 789999999999999999988776654
No 258
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=27.57 E-value=1.8e+02 Score=21.25 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 223 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~L 223 (258)
++.+|.... ..+...|+.+++..++...|...+.++++.++..+
T Consensus 74 ~~~~F~~~D---~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 117 (167)
T 1gjy_A 74 WRQHFISFD---SDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY 117 (167)
T ss_dssp HHHHHHHHC---TTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHhC---CCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 344555542 12456799999999998777778999999988876
No 259
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=27.57 E-value=1.6e+02 Score=20.75 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCce
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSK 238 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~ 238 (258)
.++.++++..+. ++...+-.++..|..+|+|.-.-+..++
T Consensus 43 ~~~~~ela~~l~-----~s~~tvs~~l~~L~~~glv~~~~~~~d~ 82 (138)
T 3bpv_A 43 GIKQDELATFFH-----VDKGTIARTLRRLEESGFIEREQDPENR 82 (138)
T ss_dssp TCBHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 478899999986 6899999999999999999887766543
No 260
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=27.55 E-value=1.9e+02 Score=23.62 Aligned_cols=66 Identities=6% Similarity=-0.105 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
-.....++.+.|+++.+..+++..-. ++ |..... ...-.|.++...+++++|...|..|+...|..
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~--~~-----p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLA--IE-----DIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--SS-----SSCTHH-HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--cc-----ccCccH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 34556677889999999988854432 12 111111 23445777788899999999999999987754
No 261
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=27.51 E-value=91 Score=22.48 Aligned_cols=43 Identities=9% Similarity=0.235 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 223 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~L 223 (258)
+.+|.... ..+...|+.+++..+++..|..++.++++.++..+
T Consensus 99 ~~~F~~~D---~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 141 (161)
T 3fwb_A 99 KRAFQLFD---DDHTGKISIKNLRRVAKELGETLTDEELRAMIEEF 141 (161)
T ss_dssp HHHHHHHC---TTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 44555542 12446799999999998778788999999988755
No 262
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=27.34 E-value=1.5e+02 Score=22.03 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.+++++++..+. ++..-+-..|..|...|+|....+.++
T Consensus 37 ~~~~~eLa~~lg-----is~~tls~~L~~Le~~GlI~r~~~~~d 75 (146)
T 2f2e_A 37 LTRFGEFQKSLG-----LAKNILAARLRNLVEHGVMVAVPAESG 75 (146)
T ss_dssp CCSHHHHHHHHC-----CCHHHHHHHHHHHHHTTSEEEEECSSS
T ss_pred CCCHHHHHHHhC-----CCHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 478999999986 789999999999999999998876553
No 263
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=27.13 E-value=1.2e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.++.++++..+. ++...+-.++..|..+|+|.-.-+..+
T Consensus 50 ~~t~~ela~~l~-----~s~~~vs~~l~~Le~~glv~r~~~~~d 88 (142)
T 2fbi_A 50 EMESYQLANQAC-----ILRPSMTGVLARLERDGIVRRWKAPKD 88 (142)
T ss_dssp SEEHHHHHHHTT-----CCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCHHHHHHHHC-----CCHhHHHHHHHHHHHCCCEEeecCCCC
Confidence 488999999886 789999999999999999988776554
No 264
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=26.98 E-value=1.8e+02 Score=21.12 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 223 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~L 223 (258)
++.+|..... .+...|+.+++..++...|...+.++++.++..+
T Consensus 72 ~~~~F~~~D~---d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 115 (165)
T 1k94_A 72 WKENFMTVDQ---DGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115 (165)
T ss_dssp HHHHHHHHCT---TCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3445555421 2345799999999998777778999999998877
No 265
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=26.87 E-value=1.2e+02 Score=27.19 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=41.8
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 025051 29 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 92 (258)
Q Consensus 29 f~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 92 (258)
.+.++++.+..++...-.. .| .+ ..+.+-.|.+....+++++|.+.|+.|+..||
T Consensus 23 ~~~~~~~~a~~~~e~al~~-~P------~~--~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-FP------SS--GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-CT------TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred HHhCCHHHHHHHHHHHHHH-CC------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 5689999999888654331 33 33 34455667788888999999999999999998
No 266
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=26.57 E-value=1.8e+02 Score=20.86 Aligned_cols=34 Identities=35% Similarity=0.306 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 231 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 231 (258)
..++.++++..+. ++..-|-.++..|..+|+|.-
T Consensus 30 ~~~s~~ela~~l~-----is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 30 EGAKINRIAKDLK-----IAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp SCBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHhC-----CChHHHHHHHHHHHHCCCEEe
Confidence 4689999999997 789999999999999999864
No 267
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=26.40 E-value=1.1e+02 Score=20.37 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEe
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 233 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 233 (258)
.++.+++++.+. ++...+-..+..|...|+|...-
T Consensus 30 ~~~~~ela~~l~-----is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 30 KAPFSQIQKVLD-----LTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp EEEHHHHHHHTT-----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEe
Confidence 588999999886 78999999999999999998765
No 268
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=26.07 E-value=26 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.6
Q ss_pred cccCCC--chhHHHHH-HHHHHHHHHHhcCC
Q 025051 6 VLAGKG--SKRVGALY-LTCQLFKIYFKLGT 33 (258)
Q Consensus 6 ~~~~d~--~Kk~~~~~-~~n~l~kiyf~l~~ 33 (258)
+|..|+ +-+||+|. +.-.+++-|+++..
T Consensus 11 icktdgipnikwgmyiafgekllksylkmka 41 (82)
T 3fbl_A 11 ICKTDGIPNIKWGMYIAFGEKLLKSYLKMKA 41 (82)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 577784 89999775 56678999998753
No 269
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=26.06 E-value=1.3e+02 Score=21.69 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 191 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 191 ~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
+...|+.+++..++...|..++.++++.++..+=.+| .|.|+.
T Consensus 104 ~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~--dg~i~~ 146 (158)
T 2jnf_A 104 GNGYISTDVMREILAELDETLSSEDLDAMIDEIDADG--SGTVDF 146 (158)
T ss_dssp SSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCSSC--CSEECS
T ss_pred CCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCCCC--CCcEeH
Confidence 4457999999999987777789999999887653332 455554
No 270
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=25.64 E-value=96 Score=22.39 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccC-CCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEM-DMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~-~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
+.+|..... .+...|+.+++..++...|. .++.++++.++..+=.+| .|+|+.
T Consensus 43 ~~~F~~~D~---d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~--dG~I~~ 96 (135)
T 3h4s_E 43 CKGFSLLAD---PERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDG--DGALNQ 96 (135)
T ss_dssp HHHHHHHSB---TTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSC--SSSBCH
T ss_pred HHHHHHHCC---CCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--CCCCcH
Confidence 445555421 23467999999999887773 788888888877553333 455543
No 271
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=25.15 E-value=1.1e+02 Score=21.86 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=34.0
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.++.++++..+. ++..-+-.++..|...|+|.-.-+.++
T Consensus 41 ~~t~~ela~~l~-----~~~stvs~~l~~L~~~G~v~r~~~~~d 79 (152)
T 1ku9_A 41 PLTISDIMEELK-----ISKGNVSMSLKKLEELGFVRKVWIKGE 79 (152)
T ss_dssp CEEHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEECCTTC
T ss_pred CCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 489999999997 789999999999999999998765544
No 272
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=25.12 E-value=1.2e+02 Score=21.67 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
+.+|..... .+...|+.+++..++...|...+.++++.++... .|.|+..
T Consensus 19 ~~~F~~~D~---d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~------~g~i~~~ 68 (153)
T 2ovk_B 19 KEAFTMIDQ---DRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC------PGQLNFT 68 (153)
T ss_dssp HHHHHHHCC---STTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS------SSCCCSH
T ss_pred HHHHHHhCC---CCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc------CCCCCHH
Confidence 455555421 2456799999999998777778999998888765 5555543
No 273
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.89 E-value=1.4e+02 Score=22.23 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCce-EEEEecCCCCCC
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSK-VVVLSKQDPFPK 250 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~-~lVlsk~~pFP~ 250 (258)
+.+|.... ..+.-.|+.+++..++.-.|..++.+|++.++..+=...==.|.|+.+.= .+++ +.|||.
T Consensus 88 ~~aF~~fD---~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~--~~p~pd 156 (159)
T 3i5g_C 88 MEAFKTFD---REGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVM--AGPFPD 156 (159)
T ss_dssp HHHHHHHC---TTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHH--HCSCCC
T ss_pred HHHHHHHh---cCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHH--CCCCCC
Confidence 44555542 12456799999999998888889999999887644211112477777541 1122 467775
No 274
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=24.78 E-value=1.8e+02 Score=22.20 Aligned_cols=53 Identities=6% Similarity=0.084 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWL----EMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~----~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++.+|.... .+.-.|+.+++..++... |..++.++++.++...= +| .|.|+.+
T Consensus 78 l~~aF~~fD----d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~--dG~I~~~ 134 (174)
T 2i7a_A 78 YQHVFQKVQ----TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DS--VGRVSFP 134 (174)
T ss_dssp HHHHHHHHC----SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CT--TSEECHH
T ss_pred HHHHHHHhc----CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CC--CCeEcHH
Confidence 355565552 234579999999999876 77788999998887654 44 6677653
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.55 E-value=37 Score=34.11 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=38.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHH
Q 025051 24 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 89 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 89 (258)
++..+...+.++.+..+..-++. ....+ |..|+.++..|++++|.++|.+|-.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----------t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----------DPIAV--YLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----------SHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----------ChHHH--HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 45566777888877766543332 22233 8899999999999999999988753
No 276
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=24.32 E-value=57 Score=29.14 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=41.3
Q ss_pred HHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc
Q 025051 28 YFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 94 (258)
Q Consensus 28 yf~l~~~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 94 (258)
++..|+++.+...+. ++.- + | + ...+...|+++...|++++|.+++.+|+..-|..
T Consensus 287 ~l~~gd~d~A~~~l~rAl~L------n--~-s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 287 ALVKGKTDESYQAINTGIDL------E--M-S--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHTCHHHHHHHHHHHHHH------C--C-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhCCCHHHHHHHHHHHHhc------C--C-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 344588888887773 3332 1 1 1 2344788999999999999999999999987743
No 277
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=23.43 E-value=2.1e+02 Score=20.93 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++.+|... +..+.-.|+..++..++...|...+.++++.++..+=.+| .|.|+.+
T Consensus 52 l~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~--dg~I~~~ 106 (150)
T 2jjz_A 52 FKEKYMEF---DLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGV--SDTISYR 106 (150)
T ss_dssp HHHHHTTS---CCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTS--CSSBCHH
T ss_pred HHHHHHHh---CCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCC--CCcEeHH
Confidence 34555443 2234567999999999987777788999998887654333 4555543
No 278
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=22.75 E-value=1.5e+02 Score=22.82 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=36.1
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCceEEEEec
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 244 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~~lVlsk 244 (258)
..++.++|++.+. ++..-++.++..|-..|+|...=-.. +-..+++
T Consensus 43 ~~~s~~eIA~~~~-----i~~~~l~kil~~L~~aGlv~s~rG~~-GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKN-----LSEHYLEQLIGPLRNAGIVKSIRGAH-GGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEECSTT-CEEEECS
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCeEEEecCCC-CceEecC
Confidence 3589999999987 79999999999999999998653222 3345654
No 279
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=22.60 E-value=1.3e+02 Score=24.62 Aligned_cols=70 Identities=14% Similarity=-0.070 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCC----------------------------CCCCccchhhhhhhhhHHhh
Q 025051 21 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDF----------------------------EEFPKRDKVTYMYYTGRLEV 72 (258)
Q Consensus 21 ~n~l~kiyf~l~~~~~~~~l~~~i~~~~~p~~----------------------------~~~~~~~~v~y~YY~G~~~~ 72 (258)
...+-.+|.+.|+++.+...++.+-.. -|+. ...| +....+|-.|.++.
T Consensus 154 ~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~ 230 (287)
T 3qou_A 154 GLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHH
Confidence 345667899999999999888654331 1210 0011 12334555666666
Q ss_pred hhcChHHHHHHHHHHHHhcCc
Q 025051 73 FNENFPAADQKLSYALINCNP 93 (258)
Q Consensus 73 ~~~~~~~A~~~L~~A~~~c~~ 93 (258)
..+++++|.+.|..++..-|.
T Consensus 231 ~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 231 QVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HcccHHHHHHHHHHHHhcccc
Confidence 666666666666666665443
No 280
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=22.53 E-value=1.5e+02 Score=21.03 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.++.++++..+. ++...+-.++..|..+|+|.-.-+..+
T Consensus 48 ~~~~~~la~~l~-----~~~~tvs~~l~~L~~~gli~r~~~~~d 86 (138)
T 1jgs_A 48 CITPVELKKVLS-----VDLGALTRMLDRLVCKGWVERLPNPND 86 (138)
T ss_dssp SBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEECTTC
T ss_pred CCCHHHHHHHHC-----CChHHHHHHHHHHHHCCCEEecCCccc
Confidence 478899998886 789999999999999999988766544
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.31 E-value=63 Score=33.01 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=36.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHH
Q 025051 24 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 89 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 89 (258)
++...++.+.++.+..+..-++. .... .|..|++++..+++++|.++|.+|-.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-----------~~~~--~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-----------DPIA--VYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-----------CHHH--HHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-----------CcHH--HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 44445666666666665544332 1222 38899999999999999999988744
No 282
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=22.18 E-value=97 Score=22.34 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 195 MKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 195 i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
++.++++..+. ++..-|-.++..|..+|+|.-.-+..+
T Consensus 52 ~t~~eLa~~l~-----~s~~tvs~~l~~L~~~Glv~r~~~~~d 89 (146)
T 3tgn_A 52 LTNSELARRLN-----VSQAAVTKAIKSLVKEGMLETSKDSKD 89 (146)
T ss_dssp CCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEC------
T ss_pred CCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCeEeccCCCC
Confidence 89999999987 689999999999999999987775444
No 283
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=22.16 E-value=70 Score=23.18 Aligned_cols=26 Identities=15% Similarity=-0.077 Sum_probs=14.9
Q ss_pred hhhhHHhhh----hcChHHHHHHHHHHHHh
Q 025051 65 YYTGRLEVF----NENFPAADQKLSYALIN 90 (258)
Q Consensus 65 YY~G~~~~~----~~~~~~A~~~L~~A~~~ 90 (258)
|.+|.+|.. ..|+++|.+++..|...
T Consensus 97 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 97 LILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 445555554 55666666666666554
No 284
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=22.02 E-value=1.2e+02 Score=22.84 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 176 LFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 176 L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
.++.+|.... ..+.-.|+.+++..++.-.|..++.++++.++..+=.+| .|+|+.+
T Consensus 114 ~~~~~F~~~D---~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~--dg~i~~~ 169 (195)
T 1qv0_A 114 WGDAVFDIFD---KDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDN--AGDLDVD 169 (195)
T ss_dssp HHHHHHHHTC-------CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCT--TSCEEHH
T ss_pred HHHHHHHHhc---CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCCHH
Confidence 3446666642 123467999999999987777788999988877653333 5666654
No 285
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=21.85 E-value=1.8e+02 Score=23.20 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceE
Q 025051 176 LFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 231 (258)
Q Consensus 176 L~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 231 (258)
.++.++.... ....++.++++..+. ++...|-.++..|..+|+|.=
T Consensus 7 YL~~I~~l~~-----~~~~~~~~~lA~~l~-----vs~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 7 YLKCLYELGT-----RHNKITNKEIAQLMQ-----VSPPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp HHHHHHHTTS-----SCSCCCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh-----cCCCcCHHHHHHHHC-----CChhHHHHHHHHHHHCCCEEE
Confidence 3455665531 234688999999997 789999999999999999853
No 286
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.57 E-value=1.6e+02 Score=19.22 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=34.0
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEe
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 233 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 233 (258)
-++.++|...+.-.++.++..-|--.|..|...|+|.-.-
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 4889999999865555689999999999999999997543
No 287
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=21.31 E-value=2.7e+02 Score=21.02 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
++.+|... +..+.-.|+.+++..++...|...+.++++.++..+ +| .|.|+.
T Consensus 105 ~~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~--d~--dg~i~~ 156 (198)
T 1juo_A 105 WRQHFISF---DTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--ST--NGKITF 156 (198)
T ss_dssp HHHHHHTT---CTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT--CS--SSSEEH
T ss_pred HHHHHHHh---CCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh--CC--CCeEcH
Confidence 34555543 223456799999999998777778999999988877 33 455544
No 288
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=21.29 E-value=2e+02 Score=19.66 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=27.3
Q ss_pred cccHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHHcCcceEEeec
Q 025051 194 QMKLDVIVKALKW-----LEMDMDVDEVECIVAILIHKNLVKGYFAH 235 (258)
Q Consensus 194 ~i~l~~i~~al~~-----~~~~~~~~evE~ila~LI~~G~IkGyI~~ 235 (258)
.|+.+++..++.. .|...+.++++.++..+=.+| .|.|+.
T Consensus 28 ~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~--dG~I~f 72 (99)
T 2y5i_A 28 KLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNK--DNEVDF 72 (99)
T ss_dssp EECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTC--SSSEEH
T ss_pred cCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCC--CCcCcH
Confidence 7999999999864 244568888888887653333 444543
No 289
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=21.26 E-value=1.9e+02 Score=19.30 Aligned_cols=54 Identities=6% Similarity=-0.025 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
+.+|.... ..+.-.|+..++..++...|..++.++++.++..+=.+| .|.|+.+
T Consensus 27 ~~~F~~~D---~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~--~g~i~~~ 80 (105)
T 1wlz_A 27 TQEFENFD---TMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNA--KGRLKYP 80 (105)
T ss_dssp HHHHHHHC---TTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCT--TSCBCHH
T ss_pred HHHHHHHC---CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCC--CCCCcHH
Confidence 45555542 124467999999999987777789999988776432122 4566654
No 290
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=21.23 E-value=1.1e+02 Score=22.14 Aligned_cols=55 Identities=13% Similarity=-0.078 Sum_probs=36.3
Q ss_pred HHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhh----hcChHHHHHHHHHHHHh
Q 025051 24 LFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALIN 90 (258)
Q Consensus 24 l~kiyf~l~~~~~~~~l~~-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~----~~~~~~A~~~L~~A~~~ 90 (258)
+-.+|......+.+...++ +.+. ....=.|.+|.+|.. ..|+++|.++++.|...
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 4455666666665554443 2221 122345778888886 89999999999999886
No 291
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=21.17 E-value=2.2e+02 Score=20.26 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=33.3
Q ss_pred cHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCce
Q 025051 196 KLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSK 238 (258)
Q Consensus 196 ~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~~ 238 (258)
+.++++..+. ++...+-.++..|..+|+|.-.-+..++
T Consensus 52 ~~~~la~~l~-----~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 89 (144)
T 3f3x_A 52 SMVYLANRYF-----VTQSAITAAVDKLEAKGLVRRIRDSKDR 89 (144)
T ss_dssp EHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CHHHHHHHHC-----CChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 8899999987 7899999999999999999888776653
No 292
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=21.08 E-value=1.5e+02 Score=28.05 Aligned_cols=115 Identities=10% Similarity=-0.071 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCccChHHHH
Q 025051 22 CQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIR 100 (258)
Q Consensus 22 n~l~kiyf~l~~~~~~~~l~~~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~~~~ 100 (258)
..+-.+|.+.|+++.|...++. ++.. |. ....++..|.++...++|++ .++++.|+..-|.....
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~--P~--------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a--- 536 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTF--PG--------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA--- 536 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS--TT--------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH---
Confidence 3455678999999999987754 4432 33 13456789999999999999 99999999987765431
Q ss_pred HHHHHHHHHHhhcCCCCChh-hhhhc-ccc-----ccHHHHHHHHhCC------HHHHHHHHHHc
Q 025051 101 MILKYLIPVKLSIGILPKDW-LLEKY-NLV-----EYSNIVQALRRGD------LRLLRHALEEH 152 (258)
Q Consensus 101 ~IL~~LIp~~Ll~G~~P~~~-ll~~~-~l~-----~y~~L~~av~~Gd------l~~f~~~l~~~ 152 (258)
+..+--+-+-.|++.... .+++- .+. .+..+..+...|. ...++++++..
T Consensus 537 --~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 537 --AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 111211222246543211 11111 121 2456666654433 57788877654
No 293
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=20.94 E-value=1.4e+02 Score=21.29 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.++.++++..+. ++...+-.++..|..+|+|.-.-+..+
T Consensus 47 ~~t~~ela~~l~-----~~~~tvs~~l~~Le~~Gli~r~~~~~D 85 (139)
T 3eco_A 47 GLTQNDIAKALQ-----RTGPTVSNLLRNLERKKLIYRYVDAQD 85 (139)
T ss_dssp CEEHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEECCC-
T ss_pred CcCHHHHHHHhC-----CCcccHHHHHHHHHHCCCEeecCCCCC
Confidence 588999999987 689999999999999999987766543
No 294
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=20.91 E-value=3e+02 Score=21.47 Aligned_cols=53 Identities=8% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
+.+|.... ..+...|+.+++..++.-.|..++.++++.++..+= +| .|.|+.+
T Consensus 120 ~~~F~~~D---~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~--dg~I~~~ 172 (220)
T 3sjs_A 120 YNLFVMNA---RARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RG--MAFCDLN 172 (220)
T ss_dssp HHHHHHHC---CSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC-----CCSEEHH
T ss_pred HHHHHHHC---CCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CC--CCcCcHH
Confidence 44554442 124567999999999887777789999998877654 44 3666543
No 295
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=20.90 E-value=1.8e+02 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLV 229 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~I 229 (258)
.++.++++..+. ++..-+-.++..|...|+|
T Consensus 30 ~~t~~eLa~~l~-----i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 30 DVYIQYIASKVN-----SPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CEEHHHHHHHSS-----SCHHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHHC-----cCHHHHHHHHHHHHHCcCc
Confidence 488999999886 7899999999999999999
No 296
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=20.85 E-value=1.3e+02 Score=20.32 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEee
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFA 234 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~ 234 (258)
..++.++++..+. ++..-+-.++..|...|+|...-+
T Consensus 35 ~~~t~~ela~~l~-----is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 35 KPITSEELADIFK-----LSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp SCEEHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEeecc
Confidence 3589999999987 789999999999999999987544
No 297
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=20.81 E-value=1.6e+02 Score=21.79 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 177 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 177 ~kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
++.+|.... ..+.-.|+.+++..++...|..++.++++.++..+=.+| .|.|+.+
T Consensus 111 ~~~~F~~~D---~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~--dG~i~~~ 165 (191)
T 1uhk_A 111 GDALFDIVD---KDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDE--SGQLDVD 165 (191)
T ss_dssp HHHHHHHHC---TTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCT--TSCEEHH
T ss_pred HHHHHHHhc---CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcHH
Confidence 345565542 124567999999999887777788999988877543222 4556554
No 298
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=20.65 E-value=1.4e+02 Score=21.35 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
.++.++++..+. ++...+-.++..|..+|+|.-.-+..
T Consensus 43 ~~t~~~la~~l~-----~s~~~vs~~l~~Le~~gli~r~~~~~ 80 (144)
T 1lj9_A 43 GIIQEKIAELIK-----VDRTTAARAIKRLEEQGFIYRQEDAS 80 (144)
T ss_dssp TEEHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CcCHHHHHHHHC-----CCHhHHHHHHHHHHHCCCEEeecCCC
Confidence 478999999987 68999999999999999998876553
No 299
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=20.55 E-value=4e+02 Score=22.76 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=67.5
Q ss_pred HHHHhcC--ChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcc--C---hHH
Q 025051 26 KIYFKLG--TVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ--S---EAN 98 (258)
Q Consensus 26 kiyf~l~--~~~~~~~l~~~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~--~---~~~ 98 (258)
.+++..| ++..+-.++..+... .|+. .+..+-+. .++..++|++|++.|.......|.- . .++
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~-~p~~----~~~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT-FPTW----KTQLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT-SCSH----HHHHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh-CCCc----ccHHHHHH-----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 3344444 888888888877543 2320 12223232 7889999999999999666654320 0 012
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhhhhc-cccccHHHHHHHHhCCHHHHHHHHHHc
Q 025051 99 IRMILKYLIPVKLSIGILPKDWLLEKY-NLVEYSNIVQALRRGDLRLLRHALEEH 152 (258)
Q Consensus 99 ~~~IL~~LIp~~Ll~G~~P~~~ll~~~-~l~~y~~L~~av~~Gdl~~f~~~l~~~ 152 (258)
--..|.-+|.+...+|+ +...++++- .+.+=.+++..+..- -..|++++.++
T Consensus 254 ~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~d~~~k-~~~Fd~~~~ky 306 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIKHHQEI-DAKFDELVRKY 306 (310)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHHHHHh
Confidence 23456677788888898 666665543 233445555444443 24566666554
No 300
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=20.54 E-value=1.4e+02 Score=23.69 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
.+++.++++..+. ++...+-..+..|...|+|+++
T Consensus 32 ~~~s~~eLA~~lg-----lS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILG-----KTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEE
Confidence 3589999999987 7899999999999999999998
No 301
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=20.44 E-value=1.6e+02 Score=20.79 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
.++.++++..+. ++...+-.++..|..+|+|.-.-+..
T Consensus 45 ~~~~~ela~~l~-----is~~~vs~~l~~L~~~gli~~~~~~~ 82 (142)
T 3bdd_A 45 PLHQLALQERLQ-----IDRAAVTRHLKLLEESGYIIRKRNPD 82 (142)
T ss_dssp SBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 488999999987 68999999999999999998776543
No 302
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=20.43 E-value=1.3e+02 Score=21.69 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEE
Q 025051 193 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 232 (258)
Q Consensus 193 ~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 232 (258)
..++.++|++.+. ++...++.++..|-..|+|...
T Consensus 25 ~~~s~~ela~~~~-----i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 25 GPTSLKSIAQTNN-----LSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp CCBCHHHHHHHTT-----SCHHHHHHHHHHHHHTTSEEEC
T ss_pred CcCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCceEec
Confidence 4589999999886 7899999999999999999653
No 303
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.22 E-value=1.8e+02 Score=20.95 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecCc
Q 025051 194 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 237 (258)
Q Consensus 194 ~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~~ 237 (258)
.++.++++..+. ++...|-.++..|..+|+|.-.-+..+
T Consensus 56 ~~t~~ela~~l~-----~~~~tvs~~l~~Le~~Glv~r~~~~~d 94 (150)
T 2rdp_A 56 DLTVGELSNKMY-----LACSTTTDLVDRMERNGLVARVRDEHD 94 (150)
T ss_dssp SBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEECCC-
T ss_pred CCCHHHHHHHHC-----CCchhHHHHHHHHHHCCCeeecCCCCC
Confidence 478899999886 789999999999999999987665443
No 304
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.08 E-value=1.8e+02 Score=21.43 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCcceEEeecC
Q 025051 178 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 236 (258)
Q Consensus 178 kkv~~~~~~~~~~~~~~i~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI~~~ 236 (258)
+.+|.... ..++-.|+.+++..++.-.|..++.+|++.++..+ ..+ .|.|+.+
T Consensus 88 ~~aF~~fD---~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~-D~~--dG~I~y~ 140 (153)
T 3i5g_B 88 RNAFSMFD---EDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDA-PLK--NKQFNYN 140 (153)
T ss_dssp HHHHHTTC---SSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTC-CEE--TTEECHH
T ss_pred HHHHhccc---cCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHh-CCC--cCEEcHH
Confidence 45555542 23456799999999998778889999999887642 333 5777654
Done!