BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025053
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 20 LPAGVKFDPTDQELLEHLEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKD 79
LP G +F PTD EL+EH + A R P+I E + P LP +
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPII--------AEVDLYKFDPWDLPERALF 66
Query: 80 GLIRHFFHRP-SKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVL 138
G +F P + Y G+R R G W TG +PV G+ G KK LV
Sbjct: 67 GAREWYFFTPRDRKYPNGSRPNR------AAGNGYWKATGADKPVAPRGRTLGIKKALVF 120
Query: 139 YTNYGKQKKPEKTNWVMHQYHL 160
Y GK + KT+W+MH+Y L
Sbjct: 121 YA--GKAPRGVKTDWIMHEYRL 140
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 19 GLPAGVKFDPTDQELLEHLEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSK 78
LP G +F PTD+EL+ + A +F L E + P LP +
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGY--------DFSLQLIAEIDLYKFDPWVLPNKAL 70
Query: 79 DGLIRHFFHRP-SKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILV 137
G +F P + Y G+R R G W TG + + G+ G KK LV
Sbjct: 71 FGEKEWYFFSPRDRKYPNGSRPNR------VAGSGYWKATGTDKIISTEGQRVGIKKALV 124
Query: 138 LYTNYGKQKKPEKTNWVMHQYHL 160
Y GK K KTNW+MH+Y L
Sbjct: 125 FYI--GKAPKGTKTNWIMHEYRL 145
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 20 LPAGVKFDPTDQELLEHLEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKD 79
LP G +F PTD+EL+ + A +F L E + P LP +
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGY--------DFSLQLIAEIDLYKFDPWVLPNKALF 68
Query: 80 GLIRHFFHRP-SKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVL 138
G +F P + Y G+R R G W TG + + G+ G KK LV
Sbjct: 69 GEKEWYFFSPRDRKYPNGSRPNR------VAGSGYWKATGTDKIISTEGQRVGIKKALVF 122
Query: 139 YTNYGKQKKPEKTNWVMHQYHL 160
Y GK K KTNW+MH+Y L
Sbjct: 123 YI--GKAPKGTKTNWIMHEYRL 142
>pdb|3CSL|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa And Heme
pdb|3CSL|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa And Heme
pdb|3CSN|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa
pdb|3CSN|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa
Length = 865
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 23/95 (24%)
Query: 59 LEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAY-----TTGTRKRRKVHTDEQGGETR 113
L G+ G+ Y P ++KDG R+ P KA +T TR+ V D+
Sbjct: 514 LRGQTGLSY------PDLAKDGQ-RYTIDNPCKALRLTGCSTTTREDWDVDRDQ------ 560
Query: 114 WHKTGKTRPVFIGGKVKGYKKILVLYTNYGKQKKP 148
GK P + V+ + L LYT YGK +P
Sbjct: 561 ----GKLSPT-LAVAVRPGVEWLELYTTYGKSWRP 590
>pdb|3DDR|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr-Ile671gly Mutant In Complex With Its Hemophore Hasa
And Heme
pdb|3DDR|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr-Ile671gly Mutant In Complex With Its Hemophore Hasa
And Heme
Length = 865
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 23/95 (24%)
Query: 59 LEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAY-----TTGTRKRRKVHTDEQGGETR 113
L G+ G+ Y P ++KDG R+ P KA +T TR+ V D+
Sbjct: 514 LRGQTGLSY------PDLAKDGQ-RYTIDNPCKALRLTGCSTTTREDWDVDRDQ------ 560
Query: 114 WHKTGKTRPVFIGGKVKGYKKILVLYTNYGKQKKP 148
GK P + V+ + L LYT YGK +P
Sbjct: 561 ----GKLSPT-LAVAVRPGVEWLELYTTYGKSWRP 590
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 7 WPFFKARI-------HDLPGLPAGVKFDPTDQELLEHLEAKV 41
W F ARI H LPG+ + K DP LLE L+ ++
Sbjct: 186 WRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERL 227
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 7 WPFFKARI-------HDLPGLPAGVKFDPTDQELLEHLEAKV 41
W F ARI H LPG+ + K DP LLE L+ ++
Sbjct: 186 WRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,302,750
Number of Sequences: 62578
Number of extensions: 433205
Number of successful extensions: 723
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 12
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)