Query 025053
Match_columns 258
No_of_seqs 136 out of 970
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9.1E-50 3.1E-54 342.0 15.4 153 12-181 7-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.2E-50 2.1E-54 342.2 14.3 156 10-182 7-168 (171)
3 1ldd_A APC2WHB, anaphase promo 41.2 17 0.00057 26.4 2.5 25 21-45 37-62 (74)
4 3dct_B Nuclear receptor coacti 22.9 33 0.0011 18.9 1.1 14 27-40 2-15 (21)
5 3u7d_B Protein HEG homolog 1; 22.8 21 0.00074 20.5 0.3 11 221-231 10-20 (26)
6 2c4b_A Barnase mcoeeti fusion; 17.8 1.1E+02 0.0038 24.8 3.7 43 30-82 6-54 (143)
7 4dox_A Coat protein; all helix 15.4 98 0.0034 26.9 3.0 28 9-36 143-171 (226)
8 1cmb_A Met APO-repressor; DNA- 12.6 2.5E+02 0.0087 21.1 4.2 38 27-77 50-88 (104)
9 2oh5_A Polyhedrin, C-polyhedri 11.1 1.4E+02 0.0048 25.0 2.6 27 112-138 141-168 (248)
10 3cpr_A Dihydrodipicolinate syn 10.9 72 0.0025 28.2 0.8 29 12-41 110-138 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9.1e-50 Score=341.98 Aligned_cols=153 Identities=31% Similarity=0.533 Sum_probs=127.7
Q ss_pred hcccCCCCCCCceeeCCChHHHHHH-HHHHHhcCcCCCCCcccccccccccccCcCCCCCCCCCccccCCc-eEEEEecC
Q 025053 12 ARIHDLPGLPAGVKFDPTDQELLEH-LEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGL-IRHFFHRP 89 (258)
Q Consensus 12 ~~~~~~~~LPpGfRF~PTDeELI~y-L~~Kv~g~~~~~~Pl~~~~I~~vd~e~DVY~~~PweLp~~~~~g~-~~yFF~~~ 89 (258)
..++..++|||||||+|||||||.| |++|+.|. |++..+|++ +|||.+|||+||+.+..++ +||||+++
T Consensus 7 ~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~-----~~~~~~I~e----vDvy~~~Pw~Lp~~~~~g~~ewYFFs~r 77 (174)
T 3ulx_A 7 RDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQ-----RLPVPIIAE----VDLYKFDPWDLPERALFGAREWYFFTPR 77 (174)
T ss_dssp --CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTC-----CCSSSCCEE----CCGGGSCGGGSGGGCSSCSSEEEEEEEC
T ss_pred cccccccCCCCcceeCCCHHHHHHHHHHHHhcCC-----CCCcCeeee----cccccCCchhhhhhhccCCceEEEEecc
Confidence 3467788999999999999999975 99999984 555677765 5799999999999876554 78999999
Q ss_pred CCCCCCCCcccccccccCCCCCceEeecCCCceEEeCCeEEEEEEEEEEEeecCCCCCCCccceEEEEEeeCCCCCC---
Q 025053 90 SKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVLYTNYGKQKKPEKTNWVMHQYHLGGNEEE--- 166 (258)
Q Consensus 90 ~kk~~~G~R~~R~~~~~~~gg~G~Wk~~G~~k~I~~~G~vvG~Kk~l~Fy~~~g~~~~g~kT~WvMhEY~L~~~~~~--- 166 (258)
.++|++|.|++|++. +|+||++|++++|.++|.+||+||+|+||. |+++++.||+|+||||+|.++...
T Consensus 78 ~~ky~~g~R~nR~t~------~G~WkatG~dk~I~~~g~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~L~~~~~~~~~ 149 (174)
T 3ulx_A 78 DRKYPNGSRPNRAAG------NGYWKATGADKPVAPRGRTLGIKKALVFYA--GKAPRGVKTDWIMHEYRLADAGRAAAG 149 (174)
T ss_dssp CC-----CCSCEEET------TEEEEECSCCEEECCSSSCCEEEEEEEEEE--SSTTSCEEEEEEEEEEEECSCC-----
T ss_pred ccccCCCCCceeecC------CceEccCCCCcEEeeCCcEEEEEEEEEEec--CCCCCCCcCCeEEEEEEeCCCCCcccc
Confidence 999999999999973 699999999999999999999999999999 999999999999999999987532
Q ss_pred ------CCCCEEEEEEEEeCC
Q 025053 167 ------KDGELVVSKVFYQTQ 181 (258)
Q Consensus 167 ------~~~~~VLCKI~~k~~ 181 (258)
..++|||||||+|..
T Consensus 150 ~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 150 AKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp ------CCSSEEEEEEEESCC
T ss_pred cccCCCCCCCEEEEEEEEcCC
Confidence 257899999999865
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.2e-50 Score=342.24 Aligned_cols=156 Identities=29% Similarity=0.451 Sum_probs=125.2
Q ss_pred hhhcccCCCCCCCceeeCCChHHHHHH-HHHHHhcCcCCCCCcccccccccccccCcCCCCCCCCCccccCC-ceEEEEe
Q 025053 10 FKARIHDLPGLPAGVKFDPTDQELLEH-LEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDG-LIRHFFH 87 (258)
Q Consensus 10 ~~~~~~~~~~LPpGfRF~PTDeELI~y-L~~Kv~g~~~~~~Pl~~~~I~~vd~e~DVY~~~PweLp~~~~~g-~~~yFF~ 87 (258)
+|+.......|||||||+|||||||.| |++|+.| .|++..+|++ +|||.+|||+||+.+..+ .+||||+
T Consensus 7 ~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g-----~~~~~~~I~e----~Diy~~~Pw~Lp~~~~~g~~ewyFFs 77 (171)
T 1ut7_A 7 QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAG-----YDFSLQLIAE----IDLYKFDPWVLPNKALFGEKEWYFFS 77 (171)
T ss_dssp C----CCSSCCCTTEEECCCHHHHHHHTHHHHHTT-----CCCSSCCSEE----CCGGGSCGGGHHHHSSSCSSEEEEEE
T ss_pred ccCCcccccCCCCcceeCCChHHHHHHHHHHHhcC-----CCCCCCeEee----cccccCChhHhhchhhcCCccEEEEe
Confidence 577778889999999999999999975 9999998 4566677765 579999999999987654 4788999
Q ss_pred cCCCCCCCCCcccccccccCCCCCceEeecCCCceEEeCCeEEEEEEEEEEEeecCCCCCCCccceEEEEEeeCCCCC--
Q 025053 88 RPSKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVLYTNYGKQKKPEKTNWVMHQYHLGGNEE-- 165 (258)
Q Consensus 88 ~~~kk~~~G~R~~R~~~~~~~gg~G~Wk~~G~~k~I~~~G~vvG~Kk~l~Fy~~~g~~~~g~kT~WvMhEY~L~~~~~-- 165 (258)
++.+++++|.|++|++. +|+||++|++++|.+++.+||+||+|+||. |+++++.||+|+||||+|.....
T Consensus 78 ~r~~k~~~g~R~~R~t~------~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~l~~~~~~~ 149 (171)
T 1ut7_A 78 PRDRKYPNGSRPNRVAG------SGYWKATGTDKIISTEGQRVGIKKALVFYI--GKAPKGTKTNWIMHEYRLIEPSRRN 149 (171)
T ss_dssp ECCC-------CCEEET------TEEEEEEEEEEEEEETTEEEEEEEEEEEEE--SSTTSCEEEEEEEEEEEECCCC---
T ss_pred ccccccCCCCcccccCC------CCEEeccCCCceEEecCcEEEEEEEEEEEc--CcCCCCCcCCeEEEEEEcCCCcccc
Confidence 99999999999999973 699999999999999999999999999999 89999999999999999998752
Q ss_pred --CCCCCEEEEEEEEeCCC
Q 025053 166 --EKDGELVVSKVFYQTQP 182 (258)
Q Consensus 166 --~~~~~~VLCKI~~k~~~ 182 (258)
...++|||||||+|...
T Consensus 150 ~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 150 GSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp -----CCEEEEEEEECC--
T ss_pred CcccCCCEEEEEEEEcCCC
Confidence 24579999999999764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=41.25 E-value=17 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.9
Q ss_pred CCceeeCC-ChHHHHHHHHHHHhcCc
Q 025053 21 PAGVKFDP-TDQELLEHLEAKVRADA 45 (258)
Q Consensus 21 PpGfRF~P-TDeELI~yL~~Kv~g~~ 45 (258)
|.|+.|+. |++||-.||..++..+.
T Consensus 37 ~~~~~~~~it~~eL~~fL~~~v~e~k 62 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEGYLNTLADEGR 62 (74)
T ss_dssp CGGGCCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhCCe
Confidence 66999998 99999999999998743
No 4
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=22.93 E-value=33 Score=18.91 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=10.5
Q ss_pred CCChHHHHHHHHHH
Q 025053 27 DPTDQELLEHLEAK 40 (258)
Q Consensus 27 ~PTDeELI~yL~~K 40 (258)
.+.|.+|+.||+.|
T Consensus 2 e~kdhqllrylldk 15 (21)
T 3dct_B 2 ESKDHQLLRYLLDK 15 (26)
T ss_pred chhHHHHHHHHHcc
Confidence 36788999997654
No 5
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=22.83 E-value=21 Score=20.49 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=8.5
Q ss_pred ecCCCceeecC
Q 025053 221 YYNPPFIAFDQ 231 (258)
Q Consensus 221 ~~~~~~~~~~~ 231 (258)
-|||+||+=|.
T Consensus 10 qynpsfisdds 20 (26)
T 3u7d_B 10 QYNPSFISDES 20 (26)
T ss_pred ccCcccccCcc
Confidence 58999998653
No 6
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=17.78 E-value=1.1e+02 Score=24.76 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhcCcCCCCCcccccccccccccCcCCCCCCC------CCccccCCce
Q 025053 30 DQELLEHLEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEK------LPGVSKDGLI 82 (258)
Q Consensus 30 DeELI~yL~~Kv~g~~~~~~Pl~~~~I~~vd~e~DVY~~~Pwe------Lp~~~~~g~~ 82 (258)
.++++.||.. .+ -||+.+|.- .+++-.+.+|-+ +|+...+|..
T Consensus 6 ~~~V~~yl~~--~~------~LP~~yiTK--~eA~~~GW~p~kgnL~~v~pgk~igG~v 54 (143)
T 2c4b_A 6 FDGVADYLQT--YH------KLPDNYITK--SEAQALGWVASKGNLADVAPGKSIGGDI 54 (143)
T ss_dssp HHHHHHHHHH--HS------SCCTTEECH--HHHHHTTCCGGGTCHHHHSTTCEEEEEE
T ss_pred hhHHHHHHHH--hC------cCCcccccH--HHHHHcCCCCCcCcHhhcCCCcccCCce
Confidence 4556678765 33 256777765 367778888866 6777665544
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=15.40 E-value=98 Score=26.90 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=19.5
Q ss_pred hhhhcccCCCCCCC-ceeeCCChHHHHHH
Q 025053 9 FFKARIHDLPGLPA-GVKFDPTDQELLEH 36 (258)
Q Consensus 9 ~~~~~~~~~~~LPp-GfRF~PTDeELI~y 36 (258)
||-.-.+...--|+ |..+.||++|++.|
T Consensus 143 fFD~V~n~AAl~P~~GLiR~PT~~E~iA~ 171 (226)
T 4dox_A 143 FFDGVENPAAMQPPSGLTRSPTQEERIAN 171 (226)
T ss_dssp TGGGTTCTTSCCCTTCCSSCCCHHHHHHH
T ss_pred hhcccCCccccCCCCCCCCCCCHHHHHHH
Confidence 44444444433344 89999999999987
No 8
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=12.60 E-value=2.5e+02 Score=21.05 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=27.3
Q ss_pred CCChHHHHHH-HHHHHhcCcCCCCCcccccccccccccCcCCCCCCCCCccc
Q 025053 27 DPTDQELLEH-LEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVS 77 (258)
Q Consensus 27 ~PTDeELI~y-L~~Kv~g~~~~~~Pl~~~~I~~vd~e~DVY~~~PweLp~~~ 77 (258)
|-|..||++- .+.-..| +|||++ .|+-...|.++|...
T Consensus 50 HATNSELLCEAFLHA~TG-----QPLP~D--------~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTG-----QPLPDD--------ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHC-----CCCCCG--------GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcC-----CCCCCc--------hhhhhcCCccchHHH
Confidence 5689999962 3444577 677753 478888999999654
No 9
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=11.12 E-value=1.4e+02 Score=25.02 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=20.9
Q ss_pred ceEeecC-CCceEEeCCeEEEEEEEEEE
Q 025053 112 TRWHKTG-KTRPVFIGGKVKGYKKILVL 138 (258)
Q Consensus 112 G~Wk~~G-~~k~I~~~G~vvG~Kk~l~F 138 (258)
--|.++| +-++|..+|+++|+-..|.+
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 3599998 45778889999999875543
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=10.87 E-value=72 Score=28.22 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=20.5
Q ss_pred hcccCCCCCCCceeeCCChHHHHHHHHHHH
Q 025053 12 ARIHDLPGLPAGVKFDPTDQELLEHLEAKV 41 (258)
Q Consensus 12 ~~~~~~~~LPpGfRF~PTDeELI~yL~~Kv 41 (258)
.|....+-+|| |.+.||+++|+.|++.=.
T Consensus 110 ~Gadavlv~~P-~y~~~~~~~l~~~f~~ia 138 (304)
T 3cpr_A 110 AGADGLLVVTP-YYSKPSQEGLLAHFGAIA 138 (304)
T ss_dssp TTCSEEEEECC-CSSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEECCC-CCCCCCHHHHHHHHHHHH
Confidence 34445556677 558899999999976433
Done!