BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025054
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/250 (57%), Positives = 180/250 (72%), Gaps = 1/250 (0%)
Query: 9 IAQGDLHDHESLVKAIKPVDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYGSNVD 68
I G + DH SLV+A+K VDVVIS VG ++E Q +I AIKEVG +KRFFP+E+G++VD
Sbjct: 60 IVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVD 119
Query: 69 AGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPRENILF 128
H +EPAKS + GIP+TYVS NC G+FL ++AQ G TAPPR+ ++
Sbjct: 120 NVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVI 179
Query: 129 YGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKIGKTL 188
GDG + +F KEEDI T+TIKAVDDPRTLNKTLYLR P N S ELVALWEKKI KTL
Sbjct: 180 LGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTL 239
Query: 189 EKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPDVDYA 248
EK YV E+++L++I D I + ++ SIF+KG+QTNFEI P +GVEAS+LYPDV Y
Sbjct: 240 EKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGP-AGVEASQLYPDVKYT 298
Query: 249 TVEEYLDQFV 258
TV+EYL FV
Sbjct: 299 TVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 253 bits (645), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 173/254 (68%), Gaps = 1/254 (0%)
Query: 5 INCLIAQGDLHDHESLVKAIKPVDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYG 64
+ ++ +GD++DHE+LVKAIK VD+VI A GR +EDQ K+I AIKE GN+K+FFP+E+G
Sbjct: 55 LGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFG 114
Query: 65 SNVDAGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPRE 124
+VD +EP + + G+P+TY+ C+ G+FL +AQ AT PPR+
Sbjct: 115 LDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRD 174
Query: 125 NILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKI 184
++ GDG K + E D+ T+TI+A +DP TLNK +++R PKN + E++ALWEKKI
Sbjct: 175 KVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKI 234
Query: 185 GKTLEKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPD 244
GKTLEK YV+E+Q+L+ IQ++S +L + S +KG+ +EIDP+ +EASE YPD
Sbjct: 235 GKTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPD 293
Query: 245 VDYATVEEYLDQFV 258
V Y T +EYL+QFV
Sbjct: 294 VTYTTADEYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 164/256 (64%), Gaps = 7/256 (2%)
Query: 9 IAQGDLHDHESLVKAIKPVDVVISAVG----RTEVEDQFKLIAAIKEVGNIKRFFPTEYG 64
+ + L DH+ LV A+K VDVVISA+ + +Q KL+ AIKE GNIKRF P+E+G
Sbjct: 59 LIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFG 118
Query: 65 SNVD-AGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQ-PGATAPP 122
+ D H ++P + IP+TYVS N G+F ++AQ G PP
Sbjct: 119 MDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPP 178
Query: 123 RENILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEK 182
R+ +L YGDG K I+ E+D+ TYTIK++DDP+TLNKT+Y+RPP NI S KE++ +WE+
Sbjct: 179 RDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWER 238
Query: 183 KIGKTLEKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELY 242
+ L+KIY++ L ++D S E+KI+ + IF +G+ NFEI P++ +EA++LY
Sbjct: 239 LSEQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPNA-IEATKLY 297
Query: 243 PDVDYATVEEYLDQFV 258
P+V Y T++ YL+++V
Sbjct: 298 PEVKYVTMDSYLERYV 313
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 147/250 (58%), Gaps = 1/250 (0%)
Query: 9 IAQGDLHDHESLVKAIKPVDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYGSNVD 68
I +G++ +HE +V +K VD+VISA+ + Q +I AIK GNIKRF P+++G D
Sbjct: 60 IIEGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEED 119
Query: 69 AGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPRENILF 128
P+ P +S +P+TYVS NC +F+ + P ++I+
Sbjct: 120 RIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVI 179
Query: 129 YGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKIGKTL 188
YG G+ K + N EEDIA YTIK DPR N+ + RPPKNI S EL++LWE K G +
Sbjct: 180 YGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSF 239
Query: 189 EKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPDVDYA 248
+K+++ ++Q++++ Q+ I + + SIF+KG+ ++E+ +EAS LYP++++
Sbjct: 240 KKVHMPDEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMR-KDDIEASNLYPELEFT 298
Query: 249 TVEEYLDQFV 258
+++ LD F+
Sbjct: 299 SIDGLLDLFI 308
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 138/253 (54%), Gaps = 2/253 (0%)
Query: 8 LIAQGDLHDHESLVKAIKP--VDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYGS 65
+I G +++ E++ K +K +D+V+S VG + DQ L+ A+K VG IKRF P+E+G
Sbjct: 63 IIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGH 122
Query: 66 NVDAGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPREN 125
+V+ P+EP + Y GIP TY+ CN + P PP +
Sbjct: 123 DVNRADPVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDF 182
Query: 126 ILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKIG 185
YGDG KA F DI +T+K VDD RTLNK+++ RP N + EL ++WEKKIG
Sbjct: 183 FQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIG 242
Query: 186 KTLEKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPDV 245
+TL ++ VTED +L + ++ IF+KG Q NF ID VE + LYP+
Sbjct: 243 RTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPED 302
Query: 246 DYATVEEYLDQFV 258
+ TVEE +++
Sbjct: 303 SFRTVEECFGEYI 315
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 150/254 (59%), Gaps = 4/254 (1%)
Query: 5 INCLIAQGDLHDHESLVKAIKPVDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYG 64
+ +I +G+L +HE LV+ +K VDVVISA+ ++ DQFK++ AIK GNIKRF P+++G
Sbjct: 54 LGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 113
Query: 65 SNVDAGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPRE 124
D + + P ++ IP+TYVS NC +F+ + +P P++
Sbjct: 114 VEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKD 170
Query: 125 NILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKI 184
I YG G+ K N E+DI YTIK DPR LN+ + RP NI + EL++ WEKKI
Sbjct: 171 EITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKI 230
Query: 185 GKTLEKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPD 244
GK +KI+V E++I+ + ++ + I + + +F+ G +++ + VEAS LYP+
Sbjct: 231 GKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 289
Query: 245 VDYATVEEYLDQFV 258
+ + T++E LD FV
Sbjct: 290 LKFTTIDELLDIFV 303
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 150/254 (59%), Gaps = 4/254 (1%)
Query: 5 INCLIAQGDLHDHESLVKAIKPVDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYG 64
+ +I +G+L +HE LV+ +K VDVVISA+ ++ DQFK++ AIK GNIKRF P+++G
Sbjct: 58 LGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 117
Query: 65 SNVDAGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPRE 124
D + + P ++ IP+TYVS NC +F+ + +P P++
Sbjct: 118 VEEDRINALPPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKD 174
Query: 125 NILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKI 184
I YG G+ K N E+DI YTIK DPR LN+ + RP NI + EL++ WEKKI
Sbjct: 175 EITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKI 234
Query: 185 GKTLEKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPD 244
GK +KI+V E++I+ + ++ + I + + +F+ G +++ + VEAS LYP+
Sbjct: 235 GKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 293
Query: 245 VDYATVEEYLDQFV 258
+ + T++E LD FV
Sbjct: 294 LKFTTIDELLDIFV 307
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 150/254 (59%), Gaps = 4/254 (1%)
Query: 5 INCLIAQGDLHDHESLVKAIKPVDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYG 64
+ +I +G+L +HE LV+ +K VDVVISA+ ++ DQFK++ AIK GNIKRF P+++G
Sbjct: 58 LGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 117
Query: 65 SNVDAGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPRE 124
D + + P ++ IP+TYVS NC +F+ + +P P++
Sbjct: 118 VEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKD 174
Query: 125 NILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKI 184
I YG G+ K N E+DI YTIK DPR LN+ + RP NI + EL++ WEKKI
Sbjct: 175 EITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKI 234
Query: 185 GKTLEKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPD 244
GK +KI+V E++I+ + ++ + I + + +F+ G +++ + VEAS LYP+
Sbjct: 235 GKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 293
Query: 245 VDYATVEEYLDQFV 258
+ + T++E LD FV
Sbjct: 294 LKFTTIDELLDIFV 307
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 149/254 (58%), Gaps = 4/254 (1%)
Query: 5 INCLIAQGDLHDHESLVKAIKPVDVVISAVGRTEVEDQFKLIAAIKEVGNIKRFFPTEYG 64
+ +I +G+L +HE LV+ +K VDVVISA+ + DQFK++ AIK GNIKRF P+++G
Sbjct: 58 LGAIIVKGELDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFG 117
Query: 65 SNVDAGHPIEPAKSGYXXXXXXXXXXXXXGIPHTYVSCNCSFGFFLPTMAQPGATAPPRE 124
D + + P ++ IP+TYVS NC +F+ + +P P++
Sbjct: 118 VEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKD 174
Query: 125 NILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIYSFKELVALWEKKI 184
I YG G+ K N E+DI YTIK DPR LN+ + RP NI + EL++ WEKKI
Sbjct: 175 EITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKI 234
Query: 185 GKTLEKIYVTEDQILQMIQDASNEDKIMLVVNFSIFMKGEQTNFEIDPSSGVEASELYPD 244
GK +KI+V E++I+ + ++ + I + + +F+ G +++ + VEAS LYP+
Sbjct: 235 GKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 293
Query: 245 VDYATVEEYLDQFV 258
+ + T++E LD FV
Sbjct: 294 LKFTTIDELLDIFV 307
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 123 RENILFYGDGQPKAIFNKEEDIATYTIKAVDDPRTLNKTLYLRPPKNIY 171
REN+ F G + I IA + I + D +T+ +TL+ R P I+
Sbjct: 14 RENLYFQGHXKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH 62
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 23 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 63
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 24 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 64
>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex
Length = 563
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 23 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 63
>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 25 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 65
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 51 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 91
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 52 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 92
>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22
Base Pair Dna Duplex
pdb|1K4T|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Topotecan And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1SC7|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Mj-Ii-38 And Covalent Complex With A
22 Base Pair Dna Duplex
pdb|1T8I|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Camptothecin And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1TL8|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Ai-Iii-52 And Covalent Complex With A
22 Base Pair Dna Duplex
Length = 592
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 52 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 92
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 591
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 51 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 91
>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indolocarbazole Sa315f And Covalent Complex With A 22
Base Pair Dna Duplex
Length = 592
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 52 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 92
>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 111 PTMAQPGATAPPRENILFYGDGQPKAIFNKEEDIATYTIKAVD 153
P A P P EN+ FY DG+ + K E++AT+ K +D
Sbjct: 25 PVFAPPYEPLP--ENVKFYYDGKVMKLSPKAEEVATFFAKMLD 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,592,762
Number of Sequences: 62578
Number of extensions: 300299
Number of successful extensions: 985
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 37
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)