BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025055
(258 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225448910|ref|XP_002265627.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Vitis vinifera]
gi|147789032|emb|CAN75783.1| hypothetical protein VITISV_022491 [Vitis vinifera]
Length = 250
Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 143/226 (63%), Positives = 171/226 (75%), Gaps = 21/226 (9%)
Query: 5 KKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYV 64
+ N SDS EED+T YYRYAS+ NP S+SS K+S GSG LAPSKSTVYV
Sbjct: 3 RNNNSDS-EEDETLYYRYASSSIPNPNPKSNSSK------LQKRSSGSGSLAPSKSTVYV 55
Query: 65 SNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124
SNLDY LTNSDL T+FSTFGK+A+VT+LKDR TR SRGVAF+ FV +A++AAR ++GK
Sbjct: 56 SNLDYTLTNSDLFTIFSTFGKVAKVTILKDRHTRHSRGVAFVLFVSRDEAIAAAREMNGK 115
Query: 125 VLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPMPK 184
VLN RT+ ASIAADNGRA+ FI++RVYKDKSRCYECG+ GHLSYECPRNQLGPRERP+PK
Sbjct: 116 VLNKRTLTASIAADNGRAAEFIRRRVYKDKSRCYECGEGGHLSYECPRNQLGPRERPVPK 175
Query: 185 KLRR-------RSDGEDESEFDDGG-------WASVVDGGAEERLL 216
+ RR R +G+ ++ DGG WASVVD GA++RLL
Sbjct: 176 RSRRGQGGSEARQNGDHDNGGSDGGEAFEDDNWASVVDTGADQRLL 221
>gi|449449074|ref|XP_004142290.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Cucumis sativus]
Length = 261
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/243 (59%), Positives = 173/243 (71%), Gaps = 17/243 (6%)
Query: 4 KKKNKSDSD-EEDDTFYYRY------ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLA 56
KK N SD +ED+TFYYRY + + + SS + S K GSGGL
Sbjct: 6 KKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGGSGGLV 65
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PSKST+YVSN DY+LTNSDLHTLFS FGKIARVTVLKDR TRKSRGVAF+QF+ DA+
Sbjct: 66 PSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 125
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGD-EGHLSYECPRNQL 175
AA+ +HGK+LNGR + A+IA DNGRA+ FI+KRVYKDKSRCYECG +GHLSYECP+NQL
Sbjct: 126 AAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDGHLSYECPKNQL 185
Query: 176 GPRERPMPKKLRRRSDGEDESE---------FDDGGWASVVDGGAEERLLLMGENESEEK 226
GPRERP PK++RR G E F+D WASVVDG A++RLL GEN E+K
Sbjct: 186 GPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENIVEKK 245
Query: 227 RKK 229
++K
Sbjct: 246 KEK 248
>gi|449464240|ref|XP_004149837.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like isoform 1 [Cucumis sativus]
gi|449464242|ref|XP_004149838.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like isoform 2 [Cucumis sativus]
gi|449464244|ref|XP_004149839.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like isoform 3 [Cucumis sativus]
Length = 261
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 172/243 (70%), Gaps = 17/243 (6%)
Query: 4 KKKNKSDSD-EEDDTFYYRY------ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLA 56
KK N SD +ED+TFYYRY + + + SS + S K GSGGL
Sbjct: 6 KKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGGSGGLV 65
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PSKST+YVSN DY+LTNSDLHTLFS FGKIA VTVLKDR TRKSRGVAF+QF+ DA+
Sbjct: 66 PSKSTLYVSNFDYSLTNSDLHTLFSNFGKIAHVTVLKDRQTRKSRGVAFVQFISQDDAVK 125
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGD-EGHLSYECPRNQL 175
AA+ +HGK+LNGR + A+IA DNGRA+ FI+KRVYKDKSRCYECG +GHLSYECP+NQL
Sbjct: 126 AAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDGHLSYECPKNQL 185
Query: 176 GPRERPMPKKLRRRSDGEDESE---------FDDGGWASVVDGGAEERLLLMGENESEEK 226
GPRERP PK++RR G E F+D WASVVDG A++RLL GEN E+K
Sbjct: 186 GPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENIVEKK 245
Query: 227 RKK 229
++K
Sbjct: 246 KEK 248
>gi|449473457|ref|XP_004153886.1| PREDICTED: uncharacterized protein LOC101209252 [Cucumis sativus]
Length = 267
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/249 (58%), Positives = 172/249 (69%), Gaps = 23/249 (9%)
Query: 4 KKKNKSDSD-EEDDTFYYRY------------ASTGNAPANPSSSSSADVTSSGPHKKSK 50
KK N SD +ED+TFYYRY +S + + SS + S K
Sbjct: 6 KKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHFSSQSHSHSHSSTKSGG 65
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
GSGGL PSKST+ VSN DY+LTNSDLHTLFS FGKIARVTVLKDR TRKSRGVAF+QF+
Sbjct: 66 GSGGLVPSKSTLCVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAFVQFIS 125
Query: 111 IPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGD-EGHLSYE 169
DA+ AA+ +HGK+LNGR + A+IA DNGRA+ FI+KRVYKDKSRCYECG +GHLSYE
Sbjct: 126 QDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDGHLSYE 185
Query: 170 CPRNQLGPRERPMPKKLRRRSDGEDESE---------FDDGGWASVVDGGAEERLLLMGE 220
CP+NQLGPRERP PK++RR G E F+D WASVVDG A++RLL GE
Sbjct: 186 CPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGE 245
Query: 221 NESEEKRKK 229
N E K++K
Sbjct: 246 NIVENKKEK 254
>gi|115480531|ref|NP_001063859.1| Os09g0549500 [Oryza sativa Japonica Group]
gi|50725127|dbj|BAD33744.1| putative MADP-1 protein [Oryza sativa Japonica Group]
gi|50726297|dbj|BAD33872.1| putative MADP-1 protein [Oryza sativa Japonica Group]
gi|113632092|dbj|BAF25773.1| Os09g0549500 [Oryza sativa Japonica Group]
Length = 274
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/249 (56%), Positives = 174/249 (69%), Gaps = 26/249 (10%)
Query: 3 KKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTV 62
++++ SDSD EDD+F YRY P+ + +S + G GSGGLAPSKSTV
Sbjct: 17 RRQQPGSDSDGEDDSFLYRYP----LPSAAAPGASGPSSHGGKPGGGGGSGGLAPSKSTV 72
Query: 63 YVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122
YVSNLD+ALTNSDLHTLFS FG++ARVTVLKDR +R+SRGVAF+ FV+ DA +AA +H
Sbjct: 73 YVSNLDFALTNSDLHTLFSRFGRVARVTVLKDRDSRRSRGVAFVLFVRREDAAAAAAEMH 132
Query: 123 GKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPM 182
GKVLNGRT++ASIA DNGRA+ FI++RVY+DKSRCYECG+EGHLSYECPRNQLGPRERP
Sbjct: 133 GKVLNGRTLSASIAEDNGRAAEFIRRRVYRDKSRCYECGEEGHLSYECPRNQLGPRERPP 192
Query: 183 PKKLRR--------------------RSDGEDE-SEFDDGGWASVVDG-GAEERLLLMGE 220
P K R +SD ED + F+D WASVVD G EE+ GE
Sbjct: 193 PSKKSRRGGGSGGGGGGGGGGRGASWQSDDEDSAAAFEDDRWASVVDTRGEEEKAAGKGE 252
Query: 221 NESEEKRKK 229
++ +K K+
Sbjct: 253 GKAMKKEKR 261
>gi|255577432|ref|XP_002529595.1| RNA binding motif protein, putative [Ricinus communis]
gi|223530928|gb|EEF32787.1| RNA binding motif protein, putative [Ricinus communis]
Length = 217
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 151/182 (82%), Gaps = 9/182 (4%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M K K+N+ D D++ TFYYRY+ST S+S+ + + P KS GSGGLAPSKS
Sbjct: 1 MVKNKRNRDDDDDD--TFYYRYSST-------STSTLSSLNQKNPKSKSNGSGGLAPSKS 51
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSNLDY+LTNSDLHTLFSTFGKIARVTVLKD+ +R+S+GVAFIQFV DA+SAA+
Sbjct: 52 TVYVSNLDYSLTNSDLHTLFSTFGKIARVTVLKDKQSRQSKGVAFIQFVSRDDAVSAAKQ 111
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+ K+LNGRT++ASIA+DNGRA+ FIKKRVYKDKSRCYECG+ GHLSYECP+NQLGPRER
Sbjct: 112 MDKKILNGRTLSASIASDNGRAAEFIKKRVYKDKSRCYECGEIGHLSYECPKNQLGPRER 171
Query: 181 PM 182
P+
Sbjct: 172 PV 173
>gi|414886630|tpg|DAA62644.1| TPA: RNA binding protein [Zea mays]
Length = 261
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/185 (66%), Positives = 147/185 (79%), Gaps = 8/185 (4%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M+++++ SDSD EDD+F YRY PS ++S + P GSGGLAPSKS
Sbjct: 1 MSRRRRGGSDSDGEDDSFLYRYPL-------PSVAAS-EGGGGKPRGGGGGSGGLAPSKS 52
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSNLD+ALTNSDLH LFS FG++ARVTVLKDR +R+SRGVAF+ FV DA +AA
Sbjct: 53 TVYVSNLDFALTNSDLHLLFSRFGRVARVTVLKDRESRRSRGVAFVLFVSREDAAAAAAE 112
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+HGKVLNGRT++ASIAADNGRA+ FI++RVY+DKSRCYECG+EGHLSYECPRNQLGPRER
Sbjct: 113 MHGKVLNGRTLSASIAADNGRAAEFIRRRVYRDKSRCYECGEEGHLSYECPRNQLGPRER 172
Query: 181 PMPKK 185
P P K
Sbjct: 173 PAPSK 177
>gi|326496949|dbj|BAJ98501.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/236 (58%), Positives = 164/236 (69%), Gaps = 28/236 (11%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M++++++ SDSD EDD+F YRY ++ PSS+ ++ G GSGGLAPSKS
Sbjct: 14 MSRRRRHGSDSDGEDDSFLYRYPMPSSSAGAPSSAPASGGHGGGGRGGGSGSGGLAPSKS 73
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSNLD+ALTNSDLHTLFS FGK+ARVTVLKDR +R+SRGVAF+ FV+ DA +AA
Sbjct: 74 TVYVSNLDFALTNSDLHTLFSRFGKVARVTVLKDRESRRSRGVAFVLFVRREDAAAAAAE 133
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+HGKVLNGRT+ ASIA DNGRA+ FI++R Y+DKS CYECG EGHLSYECPRNQLGPRER
Sbjct: 134 MHGKVLNGRTLAASIAEDNGRAAQFIRRREYRDKSHCYECGGEGHLSYECPRNQLGPRER 193
Query: 181 PMPKK----------------LRRRSDGE------DESE------FDDGGWASVVD 208
P P K R R DGE DE E F+D WASVVD
Sbjct: 194 PPPSKKSRRGGGAAGGRGGGRGRGRGDGEEPAGQSDEDEDAVAAAFEDDRWASVVD 249
>gi|297829568|ref|XP_002882666.1| hypothetical protein ARALYDRAFT_897216 [Arabidopsis lyrata subsp.
lyrata]
gi|297328506|gb|EFH58925.1| hypothetical protein ARALYDRAFT_897216 [Arabidopsis lyrata subsp.
lyrata]
Length = 257
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 143/225 (63%), Positives = 166/225 (73%), Gaps = 17/225 (7%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M KKK ++SD DEEDDTFYYRY+S P PS+ +S+ GSGGLAPSKS
Sbjct: 1 MKKKKIHQSD-DEEDDTFYYRYSSVAAPP--PSNPRQPSSSSAKSSAPGGGSGGLAPSKS 57
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T+YVSNLD++LTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ +V DA AAR+
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+ K+LNGR + SIAADNGRAS FIKKRVYKDKSRCYECGDEGHLSYECP+NQLGPRER
Sbjct: 118 MDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRER 177
Query: 181 PMPKKLR-RRSDGEDESE-------------FDDGGWASVVDGGA 211
P P K R RR + E E+E F++ WASVVD A
Sbjct: 178 PPPPKKRGRRKEDEGEAEEIRDWSAAPSLEGFEEENWASVVDNEA 222
>gi|388501618|gb|AFK38875.1| unknown [Medicago truncatula]
Length = 277
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/229 (55%), Positives = 157/229 (68%), Gaps = 21/229 (9%)
Query: 17 TFYYRYASTGNAPANPSSSSSA--DVTSSGPHKKSKGSGG--LAPSKSTVYVSNLDYALT 72
F+YR+ ++ + P +++++ + SS P+ K+ S G LAPSKST+YVSNLDY+LT
Sbjct: 21 VFFYRFCASSSTPNTTTTTTNNNNQIQSSKPNNKAPSSTGETLAPSKSTIYVSNLDYSLT 80
Query: 73 NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132
NSDLHTLFSTFG+IARVTVLKDR TR SRGVAFIQFV DA A ++ K+LNGRT++
Sbjct: 81 NSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDAQIAVTEMNKKILNGRTLS 140
Query: 133 ASIAADNGRASSFIKKRVYKDKS-RCYECGDEGHLSYECPRNQLGPRERPMPKKLRRRSD 191
ASIA+DNGRA FIKKRVY ++ C+ECG GHLSYECP+NQLG + RP PKK RR
Sbjct: 141 ASIASDNGRAPEFIKKRVYNTETGLCFECGGSGHLSYECPKNQLGAKARPQPKKPRRGFG 200
Query: 192 GEDESE----------------FDDGGWASVVDGGAEERLLLMGENESE 224
G S+ F++ WASVVD GA+ERLL NE E
Sbjct: 201 GSGWSKEGDEEEEENGRIGAERFEEDNWASVVDDGADERLLGRNGNEGE 249
>gi|242050084|ref|XP_002462786.1| hypothetical protein SORBIDRAFT_02g031980 [Sorghum bicolor]
gi|241926163|gb|EER99307.1| hypothetical protein SORBIDRAFT_02g031980 [Sorghum bicolor]
Length = 270
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 145/185 (78%), Gaps = 2/185 (1%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M+++++ SDSD EDD+F YRY A + +S+ GSGGLAPSKS
Sbjct: 1 MSRRRRGGSDSDGEDDSFLYRYPLPSAAASASASAGGGGKPRG--GGAGGGSGGLAPSKS 58
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSNLD+ALTNSDLH LFS FG++ARVTVLKDR +R+SRGVAF+ FV DA +AA
Sbjct: 59 TVYVSNLDFALTNSDLHLLFSRFGRVARVTVLKDRESRRSRGVAFVLFVSREDAAAAAAE 118
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+HGKVLNGRT++ASIAADNGRA+ FI++RVY+DKSRCYECG+EGHLSYECPRNQLGPRER
Sbjct: 119 MHGKVLNGRTLSASIAADNGRAAEFIRRRVYRDKSRCYECGEEGHLSYECPRNQLGPRER 178
Query: 181 PMPKK 185
P P K
Sbjct: 179 PAPSK 183
>gi|449434572|ref|XP_004135070.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Cucumis sativus]
Length = 234
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/215 (59%), Positives = 153/215 (71%), Gaps = 12/215 (5%)
Query: 4 KKKNKSDSD-EEDDTFYYRY------ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLA 56
KK N SD +ED+TFYYRY + + + SS + S K GSGGL
Sbjct: 6 KKTNSPTSDSDEDETFYYRYPFAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGGSGGLV 65
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PSKST+YVSN DY+LTNSDLHTLFS FGKIARVTVLKDR TRKSRGVAF+QF+ DA+
Sbjct: 66 PSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 125
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGD-EGHLSYECPRNQL 175
AA+ +HGK+LNGR + A+IA DNGRA+ FI+KRVYKDKSRCYECG +GHLSYECP+NQL
Sbjct: 126 AAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDGHLSYECPKNQL 185
Query: 176 GPRERPMPKKLRRRSDGEDESEFDDGGWASVVDGG 210
GPRERP PK++RR G E W +++ G
Sbjct: 186 GPRERPEPKRVRRGGVGARHEE----DWDQMLEKG 216
>gi|357159880|ref|XP_003578586.1| PREDICTED: uncharacterized protein LOC100826392 [Brachypodium
distachyon]
Length = 269
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/233 (57%), Positives = 164/233 (70%), Gaps = 25/233 (10%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M+++++ SDSD EDD+F YRY A S+S+S + P + GSGGLAPSKS
Sbjct: 1 MSRRRRQGSDSDGEDDSFLYRYPLPSAAAGASSASASGQGGGNKPGRGGSGSGGLAPSKS 60
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSNLD+ALTNSDLHTLFS FGK+ARVTVLKDR +R+SRGVAF+ FV+ +A +AA
Sbjct: 61 TVYVSNLDFALTNSDLHTLFSRFGKVARVTVLKDRESRRSRGVAFVLFVRREEAAAAAAE 120
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+HGKVLNGRT+ ASIA DNGRA+ FI++R Y+DKS CYECG+EGHLSYECPRNQLGPRER
Sbjct: 121 MHGKVLNGRTLAASIADDNGRAAQFIRRREYRDKSHCYECGEEGHLSYECPRNQLGPRER 180
Query: 181 PMPKK-----------------LRR------RSDGED--ESEFDDGGWASVVD 208
P P K +R +SD +D + F+D WASVVD
Sbjct: 181 PAPSKKSRRGGGGGGGGGGGRGVREIAGASYQSDEDDAVATAFEDDRWASVVD 233
>gi|218202578|gb|EEC85005.1| hypothetical protein OsI_32292 [Oryza sativa Indica Group]
Length = 307
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/198 (61%), Positives = 147/198 (74%), Gaps = 22/198 (11%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
GLAPSKSTVYVS+LD+ALT SDLHTLFS FG++ARVTVLKDR +R+SRGVAF+ FV+ D
Sbjct: 97 GLAPSKSTVYVSHLDFALTYSDLHTLFSRFGRVARVTVLKDRDSRRSRGVAFVLFVRRED 156
Query: 114 ALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRN 173
A +AA +HGKVLNGRT++ASIA DNGRA+ FI++RVY+DKSRCYECG+EGHLSYECPRN
Sbjct: 157 AAAAAAEMHGKVLNGRTLSASIAEDNGRAAEFIRRRVYRDKSRCYECGEEGHLSYECPRN 216
Query: 174 QLGPRERPMPKKLRR--------------------RSDGEDE-SEFDDGGWASVVDG-GA 211
QLGPRERP P K R +SD ED + F+D WASVVD G
Sbjct: 217 QLGPRERPPPSKKSRRGGGSGGGGGGGGGGRGASWQSDDEDSAAAFEDDRWASVVDTRGE 276
Query: 212 EERLLLMGENESEEKRKK 229
EE+ GE ++ +K K+
Sbjct: 277 EEKAAGKGEGKAMKKEKR 294
>gi|226504406|ref|NP_001151698.1| RNA binding protein [Zea mays]
gi|195649091|gb|ACG44013.1| RNA binding protein [Zea mays]
Length = 267
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 171/263 (65%), Gaps = 39/263 (14%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M+++++ SDSD EDD+F YRY PS ++S + P GSGGLAPSKS
Sbjct: 1 MSRRRRGGSDSDGEDDSFLYRYPL-------PSVAAS-EGGGGKPRGGGGGSGGLAPSKS 52
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSNLD+ALTNSDLH LFS FG++ARVTVLKDR +R+SRGVAF+ FV DA +AA
Sbjct: 53 TVYVSNLDFALTNSDLHLLFSRFGRVARVTVLKDRESRRSRGVAFVLFVSREDAAAAAAE 112
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+HGKVLNGRT++ASIAADNGRA+ FI++RVY+DKSRCYECG+EGHLSYECPRNQLGPRER
Sbjct: 113 MHGKVLNGRTLSASIAADNGRAAEFIRRRVYRDKSRCYECGEEGHLSYECPRNQLGPRER 172
Query: 181 PMPKK----------------------LRRRSDGEDESEFDDGG--------WASVVDG- 209
P P K ++D + + D WASVVD
Sbjct: 173 PAPSKKSRGGGGGGGGGGGSSGGRGRGRGGQADWHSDDDEDAAAAVAFEDDKWASVVDTR 232
Query: 210 GAEERLLLMGENESEEKRKKAKR 232
G EE+ GE + R++ ++
Sbjct: 233 GVEEKAAGKGEGMVKAARREKRK 255
>gi|226494446|ref|NP_001150292.1| RNA binding protein [Zea mays]
gi|195638140|gb|ACG38538.1| RNA binding protein [Zea mays]
gi|414590125|tpg|DAA40696.1| TPA: RNA binding protein [Zea mays]
Length = 267
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/185 (63%), Positives = 146/185 (78%), Gaps = 6/185 (3%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M+++++ SDSD ED++F YRY P +++S+ + GSGGLAPSKS
Sbjct: 1 MSRRRRGGSDSDGEDNSFLYRY------PLPSAAASAGVSAGGSGKPRGGGSGGLAPSKS 54
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSNLD++LTNSD+H LFS FG++ARVTVLKDR +R+SRGVAF+ FV DA +AA
Sbjct: 55 TVYVSNLDFSLTNSDIHLLFSRFGRVARVTVLKDRESRRSRGVAFVLFVLREDAAAAAAE 114
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+HGKVLNGRT++ASIA DNGRA+ FI++RVY+DKSRCYECG+EGHLSYECPRNQLGPRER
Sbjct: 115 MHGKVLNGRTLSASIADDNGRAAEFIRRRVYRDKSRCYECGEEGHLSYECPRNQLGPRER 174
Query: 181 PMPKK 185
P P K
Sbjct: 175 PAPSK 179
>gi|224109824|ref|XP_002315325.1| predicted protein [Populus trichocarpa]
gi|222864365|gb|EEF01496.1| predicted protein [Populus trichocarpa]
Length = 130
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 119/130 (91%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKST+YVSNLD++LTNSDLHTLFSTFGK+ARVTVLKDR TRKSRGVAFIQFV
Sbjct: 1 SGGLAPSKSTLYVSNLDFSLTNSDLHTLFSTFGKVARVTVLKDRTTRKSRGVAFIQFVSR 60
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA++A + K+LNGRT++ASIAADNGRA+ FIKKRVYKDKS+CYECG++GHLSYECP
Sbjct: 61 SDAVTAVEQMDKKILNGRTLSASIAADNGRAAEFIKKRVYKDKSKCYECGEDGHLSYECP 120
Query: 172 RNQLGPRERP 181
RN+LG RERP
Sbjct: 121 RNRLGIRERP 130
>gi|15228279|ref|NP_187651.1| small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis
thaliana]
gi|12322795|gb|AAG51392.1|AC011560_24 hypothetical protein; 114721-113936 [Arabidopsis thaliana]
gi|54261729|gb|AAV31168.1| At3g10400 [Arabidopsis thaliana]
gi|61656137|gb|AAX49371.1| At3g10400 [Arabidopsis thaliana]
gi|332641379|gb|AEE74900.1| small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis
thaliana]
Length = 261
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/176 (68%), Positives = 140/176 (79%), Gaps = 3/176 (1%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M K+K + SD DEEDDTFYYRY+S P PS+ +S+ GSGGLAPSKS
Sbjct: 1 MKKRKIHHSD-DEEDDTFYYRYSSVAAPP--PSNPKHQPSSSAKSSAPGGGSGGLAPSKS 57
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T+YVSNLD++LTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ +V DA AAR+
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
+ K+LNGR + SIAADNGRAS FIKKRVYKDKSRCYECGDEGHLSYECP+NQLG
Sbjct: 118 MDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLG 173
>gi|356517718|ref|XP_003527533.1| PREDICTED: uncharacterized protein LOC100814914 [Glycine max]
Length = 273
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/235 (53%), Positives = 151/235 (64%), Gaps = 22/235 (9%)
Query: 12 DEEDDTFYYRYASTG-NAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYA 70
DE+DD FYYRY+S + + + + K S LAPSKST+YVSN+DY+
Sbjct: 14 DEDDDVFYYRYSSVNPTQTQTQTQTLQHNPNPKSNNNKGSSSSSLAPSKSTLYVSNIDYS 73
Query: 71 LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130
LTNSDLHTLFSTFG++ARVTVLKDR TR SRGVAF+QFV DA AA + GKVLNGRT
Sbjct: 74 LTNSDLHTLFSTFGRVARVTVLKDRHTRLSRGVAFVQFVSRHDAHDAAAQMDGKVLNGRT 133
Query: 131 VNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPMPK------ 184
+ ASIAADNGRA FI+KRVY+D RC+ECG++GHLSY+CPRNQLGPR+RP PK
Sbjct: 134 LAASIAADNGRAPEFIRKRVYRDTDRCFECGEQGHLSYDCPRNQLGPRQRPEPKRPRRGP 193
Query: 185 ---------------KLRRRSDGEDESEFDDGGWASVVDGGAEERLLLMGENESE 224
F+D WASVVD GA ERLL +++ +
Sbjct: 194 HPHPHRHRHNDNDDAGGDDDDYDGGAERFEDDNWASVVDDGAGERLLAGNQHDGD 248
>gi|110737295|dbj|BAF00594.1| hypothetical protein [Arabidopsis thaliana]
Length = 261
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 139/176 (78%), Gaps = 3/176 (1%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
M K+K + SD DEEDDTFYYRY+S P PS+ +S+ GSGGLAPSKS
Sbjct: 1 MKKRKIHHSD-DEEDDTFYYRYSSVAAPP--PSNPKHQPSSSAKSSAPGGGSGGLAPSKS 57
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T+YVSNLD++LTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ +V DA AAR+
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVPREDAAKAARS 117
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
+ K+LNGR + SIAADNG AS FIKKRVYKDKSRCYECGDEGHLSYECP+NQLG
Sbjct: 118 MDAKILNGRKLTVSIAADNGLASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLG 173
>gi|168016155|ref|XP_001760615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688312|gb|EDQ74690.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 176
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 120/152 (78%), Gaps = 3/152 (1%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGL PSKSTVYVSNLD++LTN+DLHT+FSTFGKI +VT++KD+ TR+S+GVAFI +
Sbjct: 11 SGGLVPSKSTVYVSNLDFSLTNNDLHTIFSTFGKIGKVTIVKDKQTRESKGVAFILYASR 70
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA +A + ++GK+LN RT+ SIA DNGRA FI++R YKDKSRCYECG+ GHLSYECP
Sbjct: 71 DDAHAAVKTMNGKILNKRTLKVSIAEDNGRAKEFIRRREYKDKSRCYECGEGGHLSYECP 130
Query: 172 RNQLGPRERPMPKKLR---RRSDGEDESEFDD 200
+N LG RERP+ K+ R R DG+ + ++
Sbjct: 131 KNLLGSRERPVAKRKRGEQTRHDGDSRRDLNE 162
>gi|449534256|ref|XP_004174081.1| PREDICTED: uncharacterized protein LOC101232389 [Cucumis sativus]
Length = 228
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/155 (63%), Positives = 119/155 (76%), Gaps = 10/155 (6%)
Query: 85 KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASS 144
+IARVTVLKDR TRKSRGVAF+QF+ DA+ AA+ +HGK+LNGR + A+IA DNGRA+
Sbjct: 61 EIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAE 120
Query: 145 FIKKRVYKDKSRCYECGD-EGHLSYECPRNQLGPRERPMPKKLRRRSDGEDESE------ 197
FI+KRVYKDKSRCYECG +GHLSYECP+NQLGPRERP PK++RR G E
Sbjct: 121 FIRKRVYKDKSRCYECGAIDGHLSYECPKNQLGPRERPEPKRVRRGGVGARHKEDWGSDV 180
Query: 198 ---FDDGGWASVVDGGAEERLLLMGENESEEKRKK 229
F+D WASVVDG A++RLL GEN E+K++K
Sbjct: 181 GEGFEDDNWASVVDGDADQRLLTGGENIVEKKKEK 215
>gi|302821717|ref|XP_002992520.1| hypothetical protein SELMODRAFT_47876 [Selaginella moellendorffii]
gi|300139722|gb|EFJ06458.1| hypothetical protein SELMODRAFT_47876 [Selaginella moellendorffii]
Length = 125
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 104/125 (83%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
GSGGL PSKSTVYVSNLD++LTNSDL+T+FS GK+ +VTV+KDR TR+S+GVAFI F
Sbjct: 1 GSGGLVPSKSTVYVSNLDFSLTNSDLYTIFSKMGKVGKVTVMKDRVTRQSKGVAFILFTA 60
Query: 111 IPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
DA A +A+ G VLN RT+ SIA DNGRA FI+++VYKDKSRCYECG++GHLSYEC
Sbjct: 61 REDAEKAVKAMDGVVLNKRTLKVSIAQDNGRAREFIRRKVYKDKSRCYECGEDGHLSYEC 120
Query: 171 PRNQL 175
P+N++
Sbjct: 121 PKNKV 125
>gi|302816982|ref|XP_002990168.1| hypothetical protein SELMODRAFT_7444 [Selaginella moellendorffii]
gi|300142023|gb|EFJ08728.1| hypothetical protein SELMODRAFT_7444 [Selaginella moellendorffii]
Length = 124
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/124 (67%), Positives = 103/124 (83%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGL PSKSTVYVSNLD+ALTNSDL+T+FS GK+ +VTV+KDR TR+S+GVAFI F
Sbjct: 1 SGGLVPSKSTVYVSNLDFALTNSDLYTIFSKMGKVGKVTVMKDRVTRQSKGVAFILFTAR 60
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA A +A+ G VLN RT+ SIA DNGRA FI+++VYKDKSRCYECG++GHLSYECP
Sbjct: 61 EDAEKAVKAMDGVVLNKRTLKVSIAQDNGRAREFIRRKVYKDKSRCYECGEDGHLSYECP 120
Query: 172 RNQL 175
+N++
Sbjct: 121 KNKV 124
>gi|260814928|ref|XP_002602165.1| hypothetical protein BRAFLDRAFT_268357 [Branchiostoma floridae]
gi|229287472|gb|EEN58177.1| hypothetical protein BRAFLDRAFT_268357 [Branchiostoma floridae]
Length = 224
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 106/125 (84%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSK+TVYVSNL +ALTN+DLH +F +GK+ +VTV++D+ TR+S+GVAF+ F++
Sbjct: 2 SGGLAPSKTTVYVSNLPFALTNNDLHKIFEKYGKVVKVTVMRDKITRQSKGVAFVLFLKR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
+A + RA++GKVL GRTV S+A DNGRAS FI+++VYKDKS+CYECG+EGH+SY CP
Sbjct: 62 EEAHACVRALNGKVLFGRTVKCSMAKDNGRASEFIRRKVYKDKSQCYECGEEGHMSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNTLG 126
>gi|156376506|ref|XP_001630401.1| predicted protein [Nematostella vectensis]
gi|156217421|gb|EDO38338.1| predicted protein [Nematostella vectensis]
Length = 215
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 102/130 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYV NL Y+LTNSDLH +F +GK+ +VT+L+D+ TR+SRGVAFI F+
Sbjct: 2 SGGLAPSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A +A A++ K + GRT+ +IA DNGRA FI++R Y DKSRCYECG+ GHLSYECP
Sbjct: 62 QSAQNAVAAVNKKQMFGRTIKCTIAKDNGRAPEFIRRRDYPDKSRCYECGEGGHLSYECP 121
Query: 172 RNQLGPRERP 181
+N LG RERP
Sbjct: 122 KNMLGERERP 131
>gi|307180443|gb|EFN68469.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Camponotus floridanus]
Length = 232
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 113/148 (76%), Gaps = 1/148 (0%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SG + PSKSTVYVSNL ++LTN+D+H L S +GKI +VT+LKD+ TR+SRGVAF+ F+++
Sbjct: 2 SGHIVPSKSTVYVSNLPFSLTNNDVHQLLSNYGKIVKVTILKDKVTRRSRGVAFVLFLKV 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA+ A+A++ + GRTV +SIA DNGR++ FI++R Y DK++CYECG EGHLSY C
Sbjct: 62 EDAVVCAKALNNTEVFGRTVKSSIAVDNGRSTEFIRRRDYPDKTQCYECGQEGHLSYCCS 121
Query: 172 RNQLGPRERPMPKKLRRRSDGEDESEFD 199
N LGPR +P PK++R R + ++D
Sbjct: 122 NNALGPR-KPPPKRIRIRKKNVKQEKYD 148
>gi|340376167|ref|XP_003386605.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Amphimedon queenslandica]
Length = 229
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 110/148 (74%), Gaps = 6/148 (4%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGL PSKSTVYVSNL Y LTN+DLH +F FGKI +VTV+KD+ R+SRGVAFI F+
Sbjct: 2 SGGLCPSKSTVYVSNLPYCLTNNDLHKIFEKFGKIGKVTVVKDKEKRESRGVAFILFI-- 59
Query: 112 PDALSAARAIH---GKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSY 168
D ++AARA+ + + GRT+ SIA DNGRA FIK+++YKDKS CYEC + GHLSY
Sbjct: 60 -DKMAAARAVQIMNDREMFGRTLKCSIAKDNGRAPEFIKRKIYKDKSFCYECREGGHLSY 118
Query: 169 ECPRNQLGPRERPMPKKLRRRSDGEDES 196
+CP+N LG RE+P KK +R+ D+S
Sbjct: 119 QCPKNALGDREQPQTKKRKRKQSERDKS 146
>gi|226443342|ref|NP_001139887.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Salmo salar]
gi|221219686|gb|ACM08504.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Salmo salar]
Length = 221
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 102/127 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPS+STVYVSNL ++LTNSDLH LFS +GK+ +VT++KD+ TRKS+GVAF+ F+
Sbjct: 2 SGGLAPSRSTVYVSNLPFSLTNSDLHKLFSKYGKVVKVTIVKDKETRKSKGVAFVLFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A S R+++ K L GRTV ASIA DNGRA+ FI++R Y DKS+CYECGD GHLSY CP
Sbjct: 62 ESAQSCFRSLNNKQLFGRTVKASIAIDNGRATEFIRRRNYTDKSKCYECGDTGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNLLGER 128
>gi|47222076|emb|CAG12102.1| unnamed protein product [Tetraodon nigroviridis]
Length = 215
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 104/130 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH LF+ +GK+ +VT++KD+ TR+S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHKLFTKYGKVVKVTIVKDKDTRRSKGVAFVLFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RA++ K L GRTV ASIA DNGRA+ FI++R Y DKS+CYECGD GHLSY CP
Sbjct: 62 ESARNCVRAVNNKQLFGRTVKASIAIDNGRATEFIRRRNYTDKSKCYECGDAGHLSYACP 121
Query: 172 RNQLGPRERP 181
+N LG R+ P
Sbjct: 122 KNILGDRDPP 131
>gi|427783563|gb|JAA57233.1| Putative splicing factor sc35 [Rhipicephalus pulchellus]
Length = 214
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 106/146 (72%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
S GL PSKSTVYVSNL + LTN+DLH +F +GK+A+VTV+KD+ T KS+GVAF+ F+
Sbjct: 2 SAGLKPSKSTVYVSNLPFKLTNNDLHQIFEKYGKVAKVTVMKDKQTWKSKGVAFVLFMDP 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A A++ ++L GRT+ ASIA NGRA FI+++ YKDKSRC+ECG+EGHLSY CP
Sbjct: 62 ESASKCASALNNQLLMGRTLRASIAKYNGRAPEFIRRKEYKDKSRCFECGEEGHLSYRCP 121
Query: 172 RNQLGPRERPMPKKLRRRSDGEDESE 197
RN G RE P K+ RR+ E E
Sbjct: 122 RNSFGEREAPEKKRKRRKGQAPKEQE 147
>gi|383853880|ref|XP_003702450.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Megachile rotundata]
Length = 224
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 128/186 (68%), Gaps = 4/186 (2%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGG+ PSKSTVY+SNL ++LTN+DLH L ++GKI +VT++K++ TR+SRGVAF+ F+
Sbjct: 2 SGGVVPSKSTVYISNLPFSLTNNDLHQLLQSYGKIVKVTIMKNKITRRSRGVAFVLFLTP 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA+S A++++ + GRT+ +SIA DNGR++ FI++R Y DKS+C+ECG+EGHLSY C
Sbjct: 62 EDAVSCAKSLNNTEIGGRTIKSSIAVDNGRSTEFIRRRDYPDKSQCFECGEEGHLSYNCS 121
Query: 172 RNQLGPRERPMPK-KLRRR---SDGEDESEFDDGGWASVVDGGAEERLLLMGENESEEKR 227
N LGPR P+ K ++R++ S S+F+ + D EE + + + E+R
Sbjct: 122 SNTLGPRNPPLKKARIRKKHKSSSSCQNSDFNKNSEDELGDDNWEEEVETLSAAIALEQR 181
Query: 228 KKAKRN 233
+K N
Sbjct: 182 QKEYEN 187
>gi|242015115|ref|XP_002428219.1| RNA recognition motif containing protein, putative [Pediculus
humanus corporis]
gi|212512780|gb|EEB15481.1| RNA recognition motif containing protein, putative [Pediculus
humanus corporis]
Length = 221
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 109/135 (80%), Gaps = 1/135 (0%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+ PSKSTVYVSNL ++LTN+DLH +FS +GK+ +VTV+KDR TRKS+GVAF+ F++ DA
Sbjct: 7 VTPSKSTVYVSNLSFSLTNNDLHKVFSEYGKVVKVTVMKDRKTRKSKGVAFVLFLKKEDA 66
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
+ + ++GK + GRT+ ASIA+DNGR++ FI++R Y DKS+CYECG++GHLSY+CP N
Sbjct: 67 QNCCKMLNGKEMFGRTLKASIASDNGRSAQFIRRRDYPDKSKCYECGEDGHLSYKCPHNV 126
Query: 175 LGPRERPMPKKLRRR 189
LG R+ P PKK R R
Sbjct: 127 LGERQ-PPPKKQRIR 140
>gi|148223425|ref|NP_001086476.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Xenopus laevis]
gi|82236059|sp|Q6DJI9.1|ZCRB1_XENLA RecName: Full=Zinc finger CCHC-type and RNA-binding
motif-containing protein 1; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 31 kDa protein; Short=U11/U12
snRNP 31 kDa protein
gi|49671136|gb|AAH75189.1| MGC82154 protein [Xenopus laevis]
Length = 218
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/131 (61%), Positives = 102/131 (77%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH +FS +GK+ +VT+LKD+ +RKS+GV+F+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + R ++ K L GR + ASIA DNGRA+ FI++R Y DKSRCYECGD GHLSY CP
Sbjct: 62 ESAQNCVRGLNNKQLFGRAIKASIAKDNGRATEFIRRRNYTDKSRCYECGDTGHLSYACP 121
Query: 172 RNQLGPRERPM 182
+N LG RE P
Sbjct: 122 KNMLGEREPPQ 132
>gi|221132895|ref|XP_002159009.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Hydra magnipapillata]
Length = 244
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 103/130 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYV NL ++LTN+D+H +F FG+IA+VTVL+DR +R+S+GVAF+QF++
Sbjct: 2 SGGLAPSKSTVYVGNLPFSLTNNDIHKVFEKFGRIAKVTVLRDRVSRESKGVAFVQFIER 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A++A + ++ K L R + IA DNGRA+ FIKK+ Y DKS CYECG+EGHLSY+CP
Sbjct: 62 ASAINACKEVNQKQLFERKIKCVIAKDNGRAAEFIKKKEYPDKSTCYECGEEGHLSYKCP 121
Query: 172 RNQLGPRERP 181
+N LG RE P
Sbjct: 122 KNLLGEREAP 131
>gi|380023071|ref|XP_003695353.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Apis florea]
Length = 223
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 103/131 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGG+ PSKSTVY+SNL ++LTN+D+H L ++GKI +VTV+KD+ TRKSRGVAF+ F+
Sbjct: 2 SGGVVPSKSTVYISNLPFSLTNNDIHQLLQSYGKIVKVTVMKDKITRKSRGVAFVLFLTP 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA++ A+ ++ + GRTV +SIA DNGR++ FI++R Y DKS+CYECG+EGHLSY C
Sbjct: 62 EDAITCAKNLNNTEIGGRTVRSSIAVDNGRSTEFIRRRDYPDKSQCYECGEEGHLSYNCK 121
Query: 172 RNQLGPRERPM 182
N LGPR P+
Sbjct: 122 NNTLGPRNPPL 132
>gi|167560891|ref|NP_001107973.1| zinc finger CCHC-type and RNA binding motif 1 [Xenopus (Silurana)
tropicalis]
gi|165970829|gb|AAI58311.1| zcrb1 protein [Xenopus (Silurana) tropicalis]
Length = 215
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 102/130 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH +FS +GK+ +VT+LKD+ +R+S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRRSKGVAFVLFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
+ + R ++ K L GR + ASIA DNGRA+ FI++R Y DKSRCYECGD GHLSY CP
Sbjct: 62 ESSQNCVRGLNNKQLFGRAIKASIAIDNGRATEFIRRRNYTDKSRCYECGDTGHLSYACP 121
Query: 172 RNQLGPRERP 181
+N LG RE P
Sbjct: 122 KNMLGEREPP 131
>gi|432942753|ref|XP_004083057.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Oryzias latipes]
Length = 221
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH LF+ +GK+ +VT++KD+ TR+S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHKLFTKYGKVVKVTIVKDKDTRQSKGVAFVLFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + ARAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECGD GHLSY CP
Sbjct: 62 ESAHNCARAINNKQLFGRMIKASIAIDNGRATEFIRRRNYTDKSKCYECGDVGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNILGER 128
>gi|66552711|ref|XP_624686.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Apis mellifera]
Length = 223
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 103/131 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGG+ PSKSTVY+SNL ++LTN+D+H L ++GKI +VTV+KD+ TR+SRGVAF+ F+
Sbjct: 2 SGGVVPSKSTVYISNLPFSLTNNDIHQLLQSYGKIVKVTVMKDKITRRSRGVAFVLFLTP 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA++ A+ ++ + GRTV +SIA DNGR++ FI++R Y DKS+CYECG+EGHLSY C
Sbjct: 62 EDAITCAKNLNNTEIGGRTVRSSIAVDNGRSTEFIRRRDYPDKSQCYECGEEGHLSYNCK 121
Query: 172 RNQLGPRERPM 182
N LGPR P+
Sbjct: 122 NNTLGPRNPPL 132
>gi|410918793|ref|XP_003972869.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Takifugu rubripes]
Length = 216
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 103/130 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH LF+ +GK+ +VT++KD+ TR+S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHKLFTKYGKVVKVTIVKDKDTRRSKGVAFVLFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L RTV ASIA DNGRA+ FI++R Y DKS+CYECGD GHLSY CP
Sbjct: 62 ESARNCVRAINNKQLFSRTVKASIAIDNGRATEFIRRRNYTDKSKCYECGDVGHLSYACP 121
Query: 172 RNQLGPRERP 181
+N LG R+ P
Sbjct: 122 KNILGDRDPP 131
>gi|340720885|ref|XP_003398859.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Bombus terrestris]
Length = 223
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 103/131 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGG+ PSKSTVY+SNL ++LTN+D+H L ++GKI +VTV+K+R TR+SRGVAF+ F+
Sbjct: 2 SGGVVPSKSTVYISNLPFSLTNNDIHQLLQSYGKIVKVTVMKNRITRRSRGVAFVLFLTS 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA+S A+ ++ + GRT+ +SIA DNGR++ FI++R Y DKS+CYECG+EGHLSY C
Sbjct: 62 EDAISCAKNLNNTEIGGRTIKSSIAVDNGRSTEFIRRRDYPDKSQCYECGEEGHLSYNCR 121
Query: 172 RNQLGPRERPM 182
N LGPR P+
Sbjct: 122 NNTLGPRNPPL 132
>gi|350397936|ref|XP_003485036.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Bombus impatiens]
Length = 223
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 103/131 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGG+ PSKSTVY+SNL ++LTN+D+H L ++GKI +VTV+K+R TR+SRGVAF+ F+
Sbjct: 2 SGGVVPSKSTVYISNLPFSLTNNDIHQLLQSYGKIVKVTVMKNRITRRSRGVAFVLFLNP 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA+S A+ ++ + GRT+ +SIA DNGR++ FI++R Y DKS+CYECG+EGHLSY C
Sbjct: 62 EDAISCAKNLNNTEIGGRTIKSSIAVDNGRSTEFIRRRDYPDKSQCYECGEEGHLSYNCR 121
Query: 172 RNQLGPRERPM 182
N LGPR P+
Sbjct: 122 NNTLGPRNPPL 132
>gi|332023783|gb|EGI64007.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Acromyrmex echinatior]
Length = 228
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 103/130 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
+G +APSKSTVYVSNL Y+ TN+D+H L ++GKI +VT++KD+ TR+SRGVAF+QF++I
Sbjct: 2 NGRIAPSKSTVYVSNLPYSFTNNDIHQLLESYGKIVKVTIMKDKVTRRSRGVAFVQFLRI 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
+A+S A+ ++ + GRTV +SIA DNGR++ F+++R Y DKSRCYECG EGHLSY C
Sbjct: 62 DEAVSCAKRLNNTKVYGRTVKSSIAIDNGRSTEFLRRRDYPDKSRCYECGQEGHLSYRCN 121
Query: 172 RNQLGPRERP 181
N LGPR P
Sbjct: 122 NNTLGPRVEP 131
>gi|77917576|ref|NP_001030112.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Rattus norvegicus]
gi|116256279|sp|Q499V6.1|ZCRB1_RAT RecName: Full=Zinc finger CCHC-type and RNA-binding
motif-containing protein 1; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 31 kDa protein; Short=U11/U12
snRNP 31 kDa protein
gi|71121799|gb|AAH99747.1| Zinc finger CCHC-type and RNA binding motif 1 [Rattus norvegicus]
gi|149017620|gb|EDL76624.1| zinc finger CCHC-type and RNA binding motif 1 [Rattus norvegicus]
Length = 217
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|195998405|ref|XP_002109071.1| hypothetical protein TRIADDRAFT_35408 [Trichoplax adhaerens]
gi|190589847|gb|EDV29869.1| hypothetical protein TRIADDRAFT_35408, partial [Trichoplax
adhaerens]
Length = 216
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 13/175 (7%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPS+STVYVSNL +++TN+D+H LF GKI +VT++K++ TR+S+GVAFI F++
Sbjct: 2 SGGLAPSRSTVYVSNLPFSMTNNDIHKLFCKHGKIVKVTIMKNKETRESKGVAFILFLER 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
P AL+A A++ + GRT+ SIA DNGRAS +IK++ Y DK+RC+ECG+ GHLSY CP
Sbjct: 62 PSALAAVEALNNTEVIGRTIKCSIAHDNGRASDYIKRKNYPDKTRCFECGEFGHLSYACP 121
Query: 172 RNQLGPRERP---------MPKKLRRRS----DGEDESEFDDGGWASVVDGGAEE 213
+N LG RE P MP + + +DE EFDD + + AEE
Sbjct: 122 KNILGTREPPKKPKKKRKIMPSSPDHDNVEVDNVDDEGEFDDYTLSHAIQETAEE 176
>gi|354502961|ref|XP_003513550.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Cricetulus griseus]
Length = 216
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 102/127 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|57106414|ref|XP_534835.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Canis lupus familiaris]
Length = 217
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|224093656|ref|XP_002196012.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Taeniopygia guttata]
Length = 216
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 102/127 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL +ALTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGEAGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|126310751|ref|XP_001371554.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Monodelphis domestica]
Length = 217
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 104/130 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSQCYECGETGHLSYACP 121
Query: 172 RNQLGPRERP 181
+N LG R+ P
Sbjct: 122 KNVLGERDPP 131
>gi|74206672|dbj|BAE41588.1| unnamed protein product [Mus musculus]
gi|148672337|gb|EDL04284.1| mCG19744, isoform CRA_c [Mus musculus]
Length = 216
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|148672336|gb|EDL04283.1| mCG19744, isoform CRA_b [Mus musculus]
Length = 233
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 18 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 77
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 78 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 137
Query: 172 RNQLG 176
+N LG
Sbjct: 138 KNMLG 142
>gi|21313088|ref|NP_080301.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Mus musculus]
gi|81916891|sp|Q9CZ96.1|ZCRB1_MOUSE RecName: Full=Zinc finger CCHC-type and RNA-binding
motif-containing protein 1; AltName: Full=MADP-1;
AltName: Full=U11/U12 small nuclear ribonucleoprotein 31
kDa protein; Short=U11/U12 snRNP 31 kDa protein
gi|12849869|dbj|BAB28513.1| unnamed protein product [Mus musculus]
gi|25005468|dbj|BAC23140.1| MADP-1 protein [Mus musculus]
gi|34849714|gb|AAH58368.1| Zcrb1 protein [Mus musculus]
Length = 217
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|403269360|ref|XP_003926714.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Saimiri boliviensis boliviensis]
Length = 217
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|82232856|sp|Q5SP50.1|ZCRB1_DANRE RecName: Full=Zinc finger CCHC-type and RNA-binding
motif-containing protein 1; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 31 kDa protein; Short=U11/U12
snRNP 31 kDa protein
Length = 218
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSN+ ++LTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +R+++ K L GR V ASIA DNGRA+ FI+KR Y DKS+CYECG+EGHLSY CP
Sbjct: 62 ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGEEGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNLLGER 128
>gi|426372226|ref|XP_004053029.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 1 [Gorilla gorilla gorilla]
gi|426372228|ref|XP_004053030.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 2 [Gorilla gorilla gorilla]
Length = 217
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|51243065|ref|NP_149105.3| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Homo sapiens]
gi|114645274|ref|XP_001167603.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 4 [Pan troglodytes]
gi|397510820|ref|XP_003825785.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 1 [Pan paniscus]
gi|397510822|ref|XP_003825786.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 2 [Pan paniscus]
gi|410046827|ref|XP_003952268.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Pan troglodytes]
gi|158931154|sp|Q8TBF4.2|ZCRB1_HUMAN RecName: Full=Zinc finger CCHC-type and RNA-binding
motif-containing protein 1; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 31 kDa protein; Short=U11/U12
snRNP 31 kDa protein; Short=U11/U12-31K
gi|14211667|dbj|BAB56132.1| ZCRB1 protein [Homo sapiens]
gi|48427638|tpg|DAA05498.1| TPA_exp: U11/U12 snRNP 31K [Homo sapiens]
gi|119578246|gb|EAW57842.1| zinc finger CCHC-type and RNA binding motif 1, isoform CRA_a [Homo
sapiens]
gi|119578247|gb|EAW57843.1| zinc finger CCHC-type and RNA binding motif 1, isoform CRA_a [Homo
sapiens]
gi|261861064|dbj|BAI47054.1| zinc finger CCHC-type and RNA binding motif containing protein 1
[synthetic construct]
gi|410209170|gb|JAA01804.1| zinc finger CCHC-type and RNA binding motif 1 [Pan troglodytes]
gi|410248970|gb|JAA12452.1| zinc finger CCHC-type and RNA binding motif 1 [Pan troglodytes]
gi|410294196|gb|JAA25698.1| zinc finger CCHC-type and RNA binding motif 1 [Pan troglodytes]
gi|410336591|gb|JAA37242.1| zinc finger CCHC-type and RNA binding motif 1 [Pan troglodytes]
Length = 217
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|431901430|gb|ELK08456.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Pteropus alecto]
Length = 217
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|395841539|ref|XP_003793592.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Otolemur garnettii]
Length = 217
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRMIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|306922392|ref|NP_001182450.1| zinc finger CCHC-type and RNA binding motif 1 [Macaca mulatta]
gi|296211431|ref|XP_002752407.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Callithrix jacchus]
gi|332206508|ref|XP_003252335.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 1 [Nomascus leucogenys]
gi|402885675|ref|XP_003906274.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 1 [Papio anubis]
gi|402885677|ref|XP_003906275.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 2 [Papio anubis]
gi|441632478|ref|XP_004089692.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 2 [Nomascus leucogenys]
gi|380783333|gb|AFE63542.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Macaca mulatta]
gi|383422349|gb|AFH34388.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Macaca mulatta]
gi|384949990|gb|AFI38600.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Macaca mulatta]
Length = 217
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|348580279|ref|XP_003475906.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Cavia porcellus]
Length = 215
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|50728210|ref|XP_416034.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Gallus gallus]
Length = 216
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL +ALTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGEAGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|449272006|gb|EMC82136.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Columba livia]
Length = 216
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL +ALTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGEAGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|326911410|ref|XP_003202052.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Meleagris gallopavo]
Length = 216
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL +ALTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGEAGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|291401141|ref|XP_002716956.1| PREDICTED: zinc finger CCHC-type and RNA binding motif 1-like
[Oryctolagus cuniculus]
Length = 217
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|194211851|ref|XP_001914735.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Equus caballus]
Length = 217
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|297691580|ref|XP_002823157.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 1 [Pongo abelii]
gi|297691582|ref|XP_002823158.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 isoform 2 [Pongo abelii]
Length = 217
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNVLGER 128
>gi|67972060|dbj|BAE02372.1| unnamed protein product [Macaca fascicularis]
Length = 151
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|327272940|ref|XP_003221242.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Anolis carolinensis]
Length = 216
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYYDKSKCYECGEAGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|116283271|gb|AAH05099.1| ZCRB1 protein [Homo sapiens]
Length = 141
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|33873902|gb|AAH10177.1| ZCRB1 protein [Homo sapiens]
Length = 140
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|18490399|gb|AAH22543.1| Zinc finger CCHC-type and RNA binding motif 1 [Homo sapiens]
gi|123982552|gb|ABM83017.1| zinc finger CCHC-type and RNA binding motif 1 [synthetic construct]
gi|123997217|gb|ABM86210.1| zinc finger CCHC-type and RNA binding motif 1 [synthetic construct]
Length = 217
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 100/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|301772778|ref|XP_002921809.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Ailuropoda melanoleuca]
gi|281341848|gb|EFB17432.1| hypothetical protein PANDA_010724 [Ailuropoda melanoleuca]
Length = 217
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 100/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|198416260|ref|XP_002128081.1| PREDICTED: similar to zinc finger protein [Ciona intestinalis]
Length = 211
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH +F GK+A+VTV K++ R+S G+AF+ +++
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHKIFGKMGKVAKVTVTKNKEDRESTGLAFVLYLKK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA+ A + GK L GR + SIA DNGR FIK++ YKDKSRCYECGD HLSY CP
Sbjct: 62 EDAMKAVHIMDGKQLLGRKLKCSIAKDNGRTKEFIKRKEYKDKSRCYECGDFDHLSYNCP 121
Query: 172 RNQLGPRERPMPKKLRRR 189
+N+ G RE P PKK R R
Sbjct: 122 KNKFGDREPP-PKKKRSR 138
>gi|126339500|ref|XP_001362144.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Monodelphis domestica]
Length = 217
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKSRCYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSRCYECGETGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNVLG 126
>gi|291396317|ref|XP_002714523.1| PREDICTED: zinc finger CCHC-type and RNA binding motif 1-like
[Oryctolagus cuniculus]
Length = 246
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+G+AFI F+
Sbjct: 31 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGIAFILFLDK 90
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 91 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 150
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 151 KNMLGER 157
>gi|344267834|ref|XP_003405770.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Loxodonta africana]
Length = 217
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 100/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCTRAINNKQLFGRMIKASIAIDNGRAAEFIRRRHYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|395538109|ref|XP_003771028.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Sarcophilus harrisii]
Length = 217
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKSRCYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSRCYECGETGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNVLG 126
>gi|291391560|ref|XP_002712211.1| PREDICTED: zinc finger CCHC-type and RNA binding motif 1-like
[Oryctolagus cuniculus]
Length = 217
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 100/127 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT +KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTTMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|91087869|ref|XP_969491.1| PREDICTED: similar to Zinc finger CCHC-type and RNA-binding
motif-containing protein 1 (U11/U12 small nuclear
ribonucleoprotein 31 kDa protein) (U11/U12 snRNP 31 kDa
protein) [Tribolium castaneum]
gi|270012010|gb|EFA08458.1| hypothetical protein TcasGA2_TC006105 [Tribolium castaneum]
Length = 222
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 98/128 (76%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGL PSKSTVYVSN+ Y L N+DLH LF +GKI +VTVLKD+ TRKS+GVAFI F++I
Sbjct: 2 SGGLVPSKSTVYVSNIPYELKNNDLHKLFEKYGKIVKVTVLKDKNTRKSKGVAFILFLKI 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DAL + + + GRTV ASIA DNGR + FI+++ Y DKS+C+ECG+ GHLSY+C
Sbjct: 62 EDALKCVEETNLREMFGRTVKASIAKDNGRTTEFIRRKDYPDKSKCFECGESGHLSYKCA 121
Query: 172 RNQLGPRE 179
+N LG R+
Sbjct: 122 KNILGERD 129
>gi|62955147|ref|NP_001017589.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Danio rerio]
gi|62202409|gb|AAH92992.1| Zinc finger CCHC-type and RNA binding motif 1 [Danio rerio]
Length = 145
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSN+ ++LTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +R+++ K L GR V ASIA DNGRA+ FI+KR Y DKS+CYECG+EGHLSY CP
Sbjct: 62 ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGEEGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNLLGER 128
>gi|81673115|gb|AAI09900.1| ZCRB1 protein [Bos taurus]
Length = 139
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|426232956|ref|XP_004010483.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Ovis aries]
Length = 217
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 100/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|70778746|ref|NP_001020489.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Bos taurus]
gi|426224667|ref|XP_004006490.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Ovis aries]
gi|426247121|ref|XP_004017335.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Ovis aries]
gi|75069805|sp|Q56JZ7.1|ZCRB1_BOVIN RecName: Full=Zinc finger CCHC-type and RNA-binding
motif-containing protein 1; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 31 kDa protein; Short=U11/U12
snRNP 31 kDa protein
gi|58760376|gb|AAW82098.1| MADP-1 protein-like [Bos taurus]
gi|296487721|tpg|DAA29834.1| TPA: zinc finger CCHC-type and RNA-binding motif-containing protein
1 [Bos taurus]
Length = 217
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 100/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|410964145|ref|XP_003988616.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1 [Felis catus]
Length = 217
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 100/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K + GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQVFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|405974855|gb|EKC39468.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Crassostrea gigas]
Length = 219
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 100/125 (80%), Gaps = 1/125 (0%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYV NL ++LTN+D+H +F +G++A+VTVLKD A R+S+GVAFI F++
Sbjct: 2 SGGLAPSKSTVYVGNLPFSLTNNDIHKIFEKYGRVAKVTVLKDDA-RRSKGVAFIMFIEK 60
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A+ A RA++ + GRT+ +IA DNGR + FIK++ Y DKS+CYECGDEGHLSY+CP
Sbjct: 61 ESAIKAVRALNKTEMFGRTIKCNIAKDNGRTTEFIKRKNYPDKSKCYECGDEGHLSYKCP 120
Query: 172 RNQLG 176
+N LG
Sbjct: 121 KNLLG 125
>gi|345315508|ref|XP_001517482.2| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Ornithorhynchus anatinus]
Length = 217
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 99/125 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRK +GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKGKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +R ++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 ESAQNCSRTLNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGETGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|296484918|tpg|DAA27033.1| TPA: zinc finger CCHC-type and RNA binding motif 1-like [Bos
taurus]
Length = 217
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 99/125 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ I++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAELIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|72062514|ref|XP_796219.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Strongylocentrotus purpuratus]
Length = 233
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 99/127 (77%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL + LTN+DL +F FG++ARVT++KD+ TRKS+G+AF+ FV+
Sbjct: 2 SGGLAPSKSTVYVSNLPFTLTNNDLQQIFGRFGQVARVTIVKDKETRKSKGLAFVLFVER 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + ++++G+ L GR SIA DNGRA+ FI++R Y DKSRCYECG+ GHLSY CP
Sbjct: 62 DSAYKSIKSLNGRELFGRKWKVSIADDNGRAADFIRRRNYPDKSRCYECGEFGHLSYSCP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNTLGDR 128
>gi|395820778|ref|XP_003783737.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Otolemur garnettii]
Length = 217
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 99/127 (77%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLA SKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLASSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNTQLFGRKMKASIAIDNGRAAEFIQRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|241812106|ref|XP_002414600.1| splicing factor SC35, putative [Ixodes scapularis]
gi|215508811|gb|EEC18265.1| splicing factor SC35, putative [Ixodes scapularis]
Length = 221
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 94/129 (72%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
S GL PSKSTVYVSNL Y LTN+DLH LF +GK+A+VTV+KD+ T KS+GVAF+ FV
Sbjct: 2 SAGLTPSKSTVYVSNLPYKLTNNDLHQLFEKYGKVAKVTVMKDKQTWKSKGVAFVLFVDG 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A+ + L GRT+ ASIA NGRA FI+++ YKDKS CYECG+ GHLSY CP
Sbjct: 62 DSAARCVAALDQQQLMGRTLRASIAKYNGRAPEFIRRKEYKDKSMCYECGEAGHLSYRCP 121
Query: 172 RNQLGPRER 180
RN G RER
Sbjct: 122 RNSFGDRER 130
>gi|349806005|gb|AEQ18475.1| putative zinc finger cchc-type and rna binding motif 1
[Hymenochirus curtipes]
Length = 125
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%), Gaps = 6/130 (4%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH +FS +GK+ +VT++KD+ RKS+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLSFSLTNNDLHRIFSKYGKVVKVTIVKDKDFRKSKGVAFVLFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RA++ K ASIA DNGRA+ FI++R Y DKSRCYECGD GHLSY CP
Sbjct: 62 ESAQNCVRALNNK------QKASIAIDNGRATEFIRRRNYTDKSRCYECGDTGHLSYACP 115
Query: 172 RNQLGPRERP 181
+N LG RE P
Sbjct: 116 KNMLGEREPP 125
>gi|358340403|dbj|GAA48303.1| U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Clonorchis
sinensis]
Length = 225
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 106/141 (75%), Gaps = 1/141 (0%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVY+SNL ++LTN+DLH + + +G++ RV ++KDR +RKSRG+AF F+
Sbjct: 2 SGGLAPSKSTVYISNLPFSLTNNDLHQILTPYGRVVRVAIVKDRESRKSRGIAFALFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA A ++ L GRT+ ASIA DNGRA+ FI++R Y +KSRCYECG+ GHLSY+C
Sbjct: 62 NDARQCASQLNNTKLFGRTLKASIAKDNGRAAEFIRRREYPNKSRCYECGEFGHLSYKCS 121
Query: 172 RNQLGPRERPMP-KKLRRRSD 191
+N LG R P+ +K R++SD
Sbjct: 122 KNALGERVPPVKRRKDRKKSD 142
>gi|351710775|gb|EHB13694.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 207
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 98/125 (78%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL +++TN+DL+ +FS K+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSVTNNDLYRIFSKCSKVVKVTIVKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 NSAQNCTRAINNKQLFGRAIKASIAIDNGRAAEFIRRRSYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>gi|156537512|ref|XP_001607424.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Nasonia vitripennis]
Length = 239
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 109/154 (70%), Gaps = 7/154 (4%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SG LAPS+STVY+SNL ++LTN+DL L GKI +VTV+KD+ TR+S+GVAF+ F+
Sbjct: 2 SGTLAPSRSTVYISNLPFSLTNNDLFKLLEDHGKIVKVTVVKDKRTRRSKGVAFVLFLTP 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
DA + A A++ + GR V +SIA DNGRA FI+++ Y DK+ CYECG+EGHLSY+C
Sbjct: 62 GDAQNCATALNNTEIGGRKVKSSIAVDNGRAPEFIRRKDYPDKTSCYECGEEGHLSYQCK 121
Query: 172 RNQLGPRERPMPKKLR-----RRSDGE-DESEFD 199
+N LG R P PKK+R +R GE D S FD
Sbjct: 122 KNTLGNRS-PPPKKVRVRGKNKRKAGEMDTSYFD 154
>gi|307195458|gb|EFN77344.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Harpegnathos saltator]
Length = 231
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PSKSTVY++NL + LTN+D+H L +GKI +VT+LKDR TR SRGVAF+ F DA+
Sbjct: 6 PSKSTVYIANLPFCLTNNDVHQLLKDYGKIVKVTILKDRITRLSRGVAFVLFFNREDAVR 65
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
A ++ L GR V +SIA DNGR++ F ++R Y DKS+CYECG EGHLSY C N LG
Sbjct: 66 CASTLNNTELGGRIVKSSIAVDNGRSNEFTRRRYYPDKSQCYECGQEGHLSYCCSNNMLG 125
Query: 177 PRERPMPKKLRRRSDGEDESEFDDGGWASVVD 208
PR+ P PK+ + R+ + + D + S D
Sbjct: 126 PRKLP-PKRAKIRNKNMKQEKCDTNHYDSDSD 156
>gi|93003136|tpd|FAA00151.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 189
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
APSKSTVYVSNL ++LTN+DLH +F GK+ +VTV K++ R+S G+AF+ +++ DA+
Sbjct: 3 APSKSTVYVSNLPFSLTNNDLHKIFGKMGKVVKVTVTKNKENRESTGLAFVLYLKKEDAM 62
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
A + GK L GR + SIA DNGR FIK++ YKDKSRCYECGD HLSY CP+N+
Sbjct: 63 KAVHIMDGKQLLGRKLKCSIAKDNGRTKEFIKRKEYKDKSRCYECGDFDHLSYNCPKNKF 122
Query: 176 GPRERPMPKKLRRR 189
G RE P PKK R R
Sbjct: 123 GDREPP-PKKKRSR 135
>gi|443722948|gb|ELU11589.1| hypothetical protein CAPTEDRAFT_212631 [Capitella teleta]
Length = 240
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 96/125 (76%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPS+STVYVSN ++LTN+DLH +F +GK+ +VT+L D+ TR+S+GVAF+ F++
Sbjct: 2 SGGLAPSRSTVYVSNFPFSLTNNDLHKIFEKYGKVVKVTILCDKNTRRSKGVAFVLFLEK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A +A++ + GRT+ SIA DNGRA FI+++VY DKS+CY+CG+ GHLSY+CP
Sbjct: 62 ESAHQCVKAMNSTEMFGRTIKCSIANDNGRAQDFIRRKVYTDKSKCYQCGESGHLSYKCP 121
Query: 172 RNQLG 176
+N G
Sbjct: 122 KNLFG 126
>gi|193678935|ref|XP_001949378.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Acyrthosiphon pisum]
Length = 226
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 103/140 (73%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
LAPSK TVYVSNL + LTN+DLH +F +GK+ +VT++KD+ TR+S+GVAF+ F+ +A
Sbjct: 4 LAPSKCTVYVSNLPFNLTNNDLHKVFEKYGKLVKVTIVKDKTTRQSKGVAFVLFLNQNEA 63
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
++ +G + GRT+ +SIA DNGR++ FI+KR Y DKS CYECG EGHLSY+CP N
Sbjct: 64 NICVKSTNGIQMFGRTLKSSIAVDNGRSTEFIRKRQYTDKSFCYECGKEGHLSYKCPENC 123
Query: 175 LGPRERPMPKKLRRRSDGED 194
LG R+ P KK ++ DG +
Sbjct: 124 LGERQPPPKKKKKKNLDGNE 143
>gi|348526500|ref|XP_003450757.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Oreochromis niloticus]
Length = 220
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 103/127 (81%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH LFS +GK+ +VTV+KD+ TR+S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHKLFSKYGKVVKVTVVKDKNTRQSKGVAFVLFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + ARA++ K L GRTV ASIA DNGRA+ FI++R Y DKSRCYECGD GHLSY CP
Sbjct: 62 ESAHNCARAVNNKQLFGRTVKASIAIDNGRAAEFIRRRNYTDKSRCYECGDSGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>gi|157112564|ref|XP_001657567.1| hypothetical protein AaeL_AAEL006197 [Aedes aegypti]
gi|108878012|gb|EAT42237.1| AAEL006197-PA [Aedes aegypti]
Length = 207
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 10/173 (5%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
++STVY S+L + LTN D+ +F +G++ RVT+L+D+ TRKS+GVAF+ F +A
Sbjct: 9 TRSTVYASSLPFDLTNIDVRKIFEKYGQVVRVTILRDKQTRKSKGVAFVLFSNAKEADLC 68
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGP 177
+++ + GRT+ SIA DNG+A F K+R Y DKSRCYECG+EGHLSY+CPRN LG
Sbjct: 69 CTSLNNVEMFGRTLKVSIAKDNGKADEFAKRREYPDKSRCYECGEEGHLSYKCPRNVLGD 128
Query: 178 RERPMPKKLRRRSDGE------DESEFDDGGWASVVDGGAEERLLLMGENESE 224
+ P K+R++ G+ + S D GW D ++RL + E + E
Sbjct: 129 KSPPRTAKVRKKGAGKRFSGEMEASAGGDCGW----DSEEDDRLRRIAERQGE 177
>gi|351713220|gb|EHB16139.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 264
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 88/110 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 113 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 172
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG 161
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG
Sbjct: 173 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECG 222
>gi|347971166|ref|XP_003436702.1| AGAP013420-PA [Anopheles gambiae str. PEST]
gi|333466617|gb|EGK96316.1| AGAP013420-PA [Anopheles gambiae str. PEST]
Length = 197
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 7/160 (4%)
Query: 55 LAPS-KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
L P + T Y+SNL + LTN D+ LFS GKI +VT+L+D+ +RKS+GVAF+ F +
Sbjct: 7 LVPDIRCTAYISNLPFDLTNIDVQKLFSKHGKIIKVTILRDKVSRKSKGVAFVLFSNAQE 66
Query: 114 ALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRN 173
AL A + + GRT+ ASIA DNG+++ +++ Y DKSRCYECG EGH+SY CP+N
Sbjct: 67 ALDCCNACNSTEMFGRTLKASIAKDNGKSAQHAQRKQYPDKSRCYECGTEGHMSYSCPKN 126
Query: 174 QLGPRERPMP---KKLRRRSDGEDESEFDDGGWASVVDGG 210
LG + P K+ +R+ E + FD WAS + G
Sbjct: 127 VLGNKTPPRKKDRKQAKRKQPNETTASFD---WASDTEEG 163
>gi|170055729|ref|XP_001863711.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Culex quinquefasciatus]
gi|167875586|gb|EDS38969.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Culex quinquefasciatus]
Length = 196
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 112/178 (62%), Gaps = 9/178 (5%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P ++T YVSNL + LTN DL +F G + RVTVL+D TR+S+GVAF+ F DA
Sbjct: 8 PIRNTAYVSNLPFNLTNIDLRKIFEKHGSVVRVTVLRDPQTRQSKGVAFVLFGNAKDADQ 67
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
+A++ + GRT+ ASIA DNG+ + F ++R Y DKSRCYECG++GH+SY+CPRN LG
Sbjct: 68 CCQAMNNVEMFGRTLRASIAKDNGKGAEFSQRREYPDKSRCYECGEKGHMSYKCPRNVLG 127
Query: 177 PRERPMPKKLRRRSDGEDESEFDDGGWASVVDGGAEE--RLLLMGENESEEKRKKAKR 232
++ P+K+R++ GE ++ G A V G EE RL + E +E KR
Sbjct: 128 --DKSPPRKVRKK--GEKRTQV---GVAESVWGSDEESDRLRRITEVREQEGATAVKR 178
>gi|351715148|gb|EHB18067.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 198
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 89/115 (77%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ ++T+++ + TRKS+ VAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLAFSLTNNDLYRIFSKYGKVVKITIMEGKDTRKSKRVAFVLFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHL 166
A + RAI+ K L GR + ASIA DNGRA+ FI++ Y DKS+CYECG+ GHL
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRPKYFDKSKCYECGESGHL 116
>gi|321468303|gb|EFX79288.1| hypothetical protein DAPPUDRAFT_104375 [Daphnia pulex]
Length = 197
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSN ++LTN+DLH +F +G + +VT++K R TRKS+GVAFI + +A + +
Sbjct: 10 TVYVSNFPFSLTNNDLHQIFGQYGTVIKVTIVKHRLTRKSKGVAFIVYKTQEEASNCIQQ 69
Query: 121 IHGKVLNGRTVNASIAADNGRASSF-IKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
+ K + GR + +SIA DNGR F +K+ Y+DKS C+ECG EGHLSY+CP N LG RE
Sbjct: 70 TNQKEMFGRILKSSIAKDNGRTEEFATQKKTYEDKSHCFECGQEGHLSYQCPSNALGSRE 129
Query: 180 RP 181
P
Sbjct: 130 PP 131
>gi|321450936|gb|EFX62765.1| hypothetical protein DAPPUDRAFT_67708 [Daphnia pulex]
Length = 197
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TVYVSN ++LTN+DLH +F +G + +VT++K R TRKS+GVAFI + +A + +
Sbjct: 10 TVYVSNFPFSLTNNDLHQIFGQYGTVIKVTIVKHRLTRKSKGVAFIVYRTQEEASNCIQQ 69
Query: 121 IHGKVLNGRTVNASIAADNGRASSF-IKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
+ K + GR + +SIA DNGR F +K+ Y+DKS C+ECG EGHLSY+CP N LG RE
Sbjct: 70 TNQKEMFGRILKSSIAKDNGRTEEFATQKKTYEDKSHCFECGQEGHLSYQCPSNALGSRE 129
Query: 180 RP 181
P
Sbjct: 130 PP 131
>gi|351696053|gb|EHA98971.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 215
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 89/128 (69%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
S GLAPSKST+ VSNL +LTN++L+ FS + K +VTV+KD+ RK +GVAFI F+
Sbjct: 2 SAGLAPSKSTMCVSNLSISLTNNNLYRRFSKYAKAIKVTVMKDKDMRKGKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A ++ RAI+ K L GR + ASI DNGR + F+++R D+ + YECG+ GHLSY CP
Sbjct: 62 DSAQNSTRAINNKQLFGRVIKASIGIDNGRTAEFMQRRNCFDELKYYECGESGHLSYACP 121
Query: 172 RNQLGPRE 179
+N L RE
Sbjct: 122 KNMLRERE 129
>gi|301092975|ref|XP_002997337.1| RNA binding protein, putative [Phytophthora infestans T30-4]
gi|262110826|gb|EEY68878.1| RNA binding protein, putative [Phytophthora infestans T30-4]
Length = 222
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 79/116 (68%)
Query: 67 LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126
L YA T +D+ LF+ FGK+ARV VL+D+ TR SRGVAF+QF + D A A++ L
Sbjct: 2 LPYAYTTNDVAQLFAPFGKLARVLVLRDKQTRLSRGVAFVQFARAEDCAKAVVAMNKVWL 61
Query: 127 NGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPM 182
G T+ S+ DNGR+ F KKR Y RC+ECGD GH+SYECPRN LG RERP+
Sbjct: 62 EGMTLAVSLCRDNGRSREFTKKRKYTTSQRCFECGDLGHVSYECPRNVLGTRERPV 117
>gi|351709059|gb|EHB11978.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 185
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 85/125 (68%), Gaps = 13/125 (10%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLA SKSTVYVSN ++ TN+DL FS +GK +VT++KD+ TRKS+GVAF+ F+
Sbjct: 2 SGGLALSKSTVYVSNWPFSPTNNDLDRRFSKYGKAVKVTIMKDKDTRKSKGVAFLLFLD- 60
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
K L GR + ASIA DN RA+ FI++R DKS+CYECG GHLSY CP
Sbjct: 61 ------------KDLFGRVIKASIAIDNRRAAEFIRRRNCFDKSKCYECGQSGHLSYACP 108
Query: 172 RNQLG 176
+N LG
Sbjct: 109 KNTLG 113
>gi|125606542|gb|EAZ45578.1| hypothetical protein OsJ_30241 [Oryza sativa Japonica Group]
Length = 144
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 22/131 (16%)
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
+HGKVLNGRT++ASIA DNGRA+ FI++RVY+DKSRCYECG+EGHLSYECPRNQLGPRER
Sbjct: 1 MHGKVLNGRTLSASIAEDNGRAAEFIRRRVYRDKSRCYECGEEGHLSYECPRNQLGPRER 60
Query: 181 PMPKKLRR--------------------RSDGEDE-SEFDDGGWASVVDG-GAEERLLLM 218
P P K R +SD ED + F+D WASVVD G EE+
Sbjct: 61 PPPSKKSRRGGGSGGGGGGGGGGRGASWQSDDEDSAAAFEDDRWASVVDTRGEEEKAAGK 120
Query: 219 GENESEEKRKK 229
GE ++ +K K+
Sbjct: 121 GEGKAMKKEKR 131
>gi|348665004|gb|EGZ04840.1| hypothetical protein PHYSODRAFT_535523 [Phytophthora sojae]
Length = 224
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 79/116 (68%)
Query: 67 LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126
L YA T +D+ LF+ FGK+ARV VL+D+ TR+SRGVAF+QF + D A + L
Sbjct: 2 LPYAYTTNDVAQLFAPFGKLARVLVLRDKQTRRSRGVAFVQFARAEDCAKAVAEMDKMPL 61
Query: 127 NGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPM 182
G T+ S++ DNGR+ F KKR Y RC+ECG+ GH+SYECPRN LG RERP+
Sbjct: 62 EGMTLAVSLSRDNGRSREFAKKRKYTTSQRCFECGELGHVSYECPRNVLGTRERPV 117
>gi|300120192|emb|CBK19746.2| unnamed protein product [Blastocystis hominis]
Length = 166
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G AP +STV+VS L YA TN+D+ LF FG+IA VT+L+DR TR S+GVA++QFV+
Sbjct: 3 GRTGFAPIRSTVHVSMLPYAYTNNDVAKLFEPFGRIAHVTILRDRETRISKGVAWVQFVE 62
Query: 111 IPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A A + ++G ++ T+ A DNGR FIKKR Y C+ECG GH SY+C
Sbjct: 63 RNSAEKAIQELNGTKVDKFTIKVEWAKDNGRGGEFIKKRKYTKTKYCFECGQMGHTSYKC 122
Query: 171 PRNQLGPRERPMPKKLRRRSDGEDES 196
PRN LG R + PKK +R + E+E+
Sbjct: 123 PRNVLGDRAK--PKKKQRNVEEENEN 146
>gi|291392417|ref|XP_002712728.1| PREDICTED: zinc finger CCHC-type and RNA binding motif 1-like
[Oryctolagus cuniculus]
Length = 321
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 67 LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126
D L NSD +FS +GK+ +VT++KD+ TRKS+GVAFI F+ A + RAI+ K L
Sbjct: 123 CDRGLGNSD--AIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 180
Query: 127 NGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N LG R
Sbjct: 181 FGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGER 232
>gi|322792400|gb|EFZ16384.1| hypothetical protein SINV_11399 [Solenopsis invicta]
Length = 169
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 85/111 (76%), Gaps = 2/111 (1%)
Query: 79 LFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138
+ T GK++ +T+LKD+ATR+SRGVAF+ F++ DA+S A+ ++ K + GRTV +SIA D
Sbjct: 5 CWKTTGKLS-ITILKDKATRQSRGVAFVLFLKAEDAVSCAKDLNNKEIQGRTVKSSIAVD 63
Query: 139 NGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPMPKKLRRR 189
NGR++ FI++R Y DKS+CYECG +GHLSY C N LGPRE P KK+R R
Sbjct: 64 NGRSTEFIRRRDYPDKSKCYECGQQGHLSYCCTNNTLGPRE-PPAKKIRIR 113
>gi|291235907|ref|XP_002737886.1| PREDICTED: zinc finger CCHC-type and RNA binding motif 1-like
[Saccoglossus kowalevskii]
Length = 246
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 77/101 (76%)
Query: 79 LFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138
+F GK+ RVT++KD+ TR+S+G+AFI F++ DA + +++H K L GR + IAAD
Sbjct: 50 IFEKHGKVVRVTIVKDKETRRSKGIAFILFLKREDAHKSVKSLHNKELFGRRLTCKIAAD 109
Query: 139 NGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
NGRAS FI++R Y DKSRCYECG+ GHLSY+CP+N LG RE
Sbjct: 110 NGRASEFIRRRDYPDKSRCYECGEIGHLSYKCPKNALGERE 150
>gi|432114560|gb|ELK36408.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1,
partial [Myotis davidii]
Length = 192
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 76/101 (75%)
Query: 76 LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135
L +FS +GK+ +VT++KD+ TRKS+GVAFI F+ A + RAI+ K L GR + ASI
Sbjct: 1 LFQIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 60
Query: 136 AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
A DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N LG
Sbjct: 61 AIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLG 101
>gi|449475152|ref|XP_004154390.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like, partial [Cucumis sativus]
Length = 141
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 7/135 (5%)
Query: 4 KKKNKSDSD-EEDDTFYYRY------ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLA 56
KK N SD +ED+TFYYRY + + + SS + S K GSGGL
Sbjct: 6 KKTNSPTSDSDEDETFYYRYPFAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGGSGGLV 65
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PSKST+YVSN DY+LTNSDLHTLF FGKIARVTVLKDR TRKSRGVAF+QF+ DA+
Sbjct: 66 PSKSTLYVSNFDYSLTNSDLHTLFFNFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 125
Query: 117 AARAIHGKVLNGRTV 131
AA+ +HGK+LNGR +
Sbjct: 126 AAKQMHGKILNGRVL 140
>gi|355729970|gb|AES10045.1| zinc finger CCHC-type and RNA binding motif 1 [Mustela putorius
furo]
Length = 93
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 70/93 (75%)
Query: 89 VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKK 148
VT++KD+ TRKS+GVAFI F+ A + RAI+ K L GR + ASIA DNGRA+ FI++
Sbjct: 1 VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRR 60
Query: 149 RVYKDKSRCYECGDEGHLSYECPRNQLGPRERP 181
R Y DKS+CYECG+ GHLSY CP+N LG RE P
Sbjct: 61 RNYFDKSKCYECGESGHLSYACPKNMLGEREPP 93
>gi|256072183|ref|XP_002572416.1| hypothetical protein [Schistosoma mansoni]
Length = 1282
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 70/93 (75%)
Query: 89 VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKK 148
VTV+KD+ +RKS+GVAF+ F+ DA + A ++ + GRT+ ASIA DNGRA+ FI++
Sbjct: 1043 VTVVKDKESRKSKGVAFVLFLDKNDAFNCANKLNNMQMFGRTLKASIARDNGRAAEFIRR 1102
Query: 149 RVYKDKSRCYECGDEGHLSYECPRNQLGPRERP 181
R Y +KSRCYECG GHLSY+C +N LG RE+P
Sbjct: 1103 REYPNKSRCYECGSFGHLSYKCEKNSLGEREQP 1135
>gi|344251718|gb|EGW07822.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Cricetulus griseus]
Length = 175
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 66/87 (75%)
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVY 151
+KD+ TR+S+GVAFI F+ AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y
Sbjct: 1 MKDKDTRRSKGVAFILFLDKDSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 60
Query: 152 KDKSRCYECGDEGHLSYECPRNQLGPR 178
DKS+CYECG+ GHLSY CP+N LG R
Sbjct: 61 FDKSKCYECGESGHLSYACPKNMLGER 87
>gi|148672334|gb|EDL04281.1| mCG19744, isoform CRA_a [Mus musculus]
gi|148672335|gb|EDL04282.1| mCG19744, isoform CRA_a [Mus musculus]
Length = 175
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%)
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVY 151
+KD+ TRKS+GVAFI F+ AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y
Sbjct: 1 MKDKDTRKSKGVAFILFLDKDSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 60
Query: 152 KDKSRCYECGDEGHLSYECPRNQLG 176
DKS+CYECG+ GHLSY CP+N LG
Sbjct: 61 FDKSKCYECGESGHLSYACPKNMLG 85
>gi|119578248|gb|EAW57844.1| zinc finger CCHC-type and RNA binding motif 1, isoform CRA_b [Homo
sapiens]
Length = 176
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%)
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVY 151
+KD+ TRKS+GVAFI F+ A + RAI+ K L GR + ASIA DNGRA+ FI++R Y
Sbjct: 1 MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 60
Query: 152 KDKSRCYECGDEGHLSYECPRNQLGPR 178
DKS+CYECG+ GHLSY CP+N LG R
Sbjct: 61 FDKSKCYECGESGHLSYACPKNMLGER 87
>gi|449472383|ref|XP_004153577.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Cucumis sativus]
Length = 141
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Query: 4 KKKNKSDSD-EEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGG------LA 56
KK N SD +ED+TFYYRY S ++ + SSS + +S + L
Sbjct: 6 KKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGGSGGLV 65
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
PSKST+YVSN DY+LTNSDLHTLFS FGKIARVTVLKDR TRKS GVAF+QF+ D
Sbjct: 66 PSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSHGVAFVQFISQDD 122
>gi|335288660|ref|XP_003355667.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Sus scrofa]
Length = 93
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 70/92 (76%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRAS 143
A + RAI+ K L GR AS+A NG+ +
Sbjct: 62 DSAQNCTRAINNKQLIGRGKKASLAIANGKTT 93
>gi|159164312|pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 64/82 (78%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
LAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ A
Sbjct: 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 71
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
+ RAI+ K L GR + ASIA
Sbjct: 72 QNCTRAINNKQLFGRVIKASIA 93
>gi|351715752|gb|EHB18671.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 153
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 66/93 (70%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKST+YVSNL +LT+ DL+ +FS +GK+ +VT++K++ T+KS+GVAFI F+
Sbjct: 61 SGGLAPSKSTMYVSNLPLSLTDRDLYRIFSKYGKVVKVTIMKNKDTKKSKGVAFILFLDK 120
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASS 144
A + R I K L G + ASIA DN SS
Sbjct: 121 DSAQNCTRVIINKQLFGSVIKASIAIDNEWDSS 153
>gi|361067837|gb|AEW08230.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158179|gb|AFG61444.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158181|gb|AFG61445.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158183|gb|AFG61446.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158185|gb|AFG61447.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158187|gb|AFG61448.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158189|gb|AFG61449.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158191|gb|AFG61450.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158193|gb|AFG61451.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158195|gb|AFG61452.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158197|gb|AFG61453.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158199|gb|AFG61454.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158201|gb|AFG61455.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158203|gb|AFG61456.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158205|gb|AFG61457.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
gi|383158207|gb|AFG61458.1| Pinus taeda anonymous locus 2_3641_01 genomic sequence
Length = 123
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 61/91 (67%), Gaps = 21/91 (23%)
Query: 145 FIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPMPKKLR----------------- 187
FIK+RVYKDK+RCYECG+ GHLSYECPRN+LGPRERP+PK+ R
Sbjct: 1 FIKRRVYKDKTRCYECGEPGHLSYECPRNKLGPRERPVPKRGRKGQRNGGGGFGRGEALS 60
Query: 188 --RRSDGE-DESEFDDGGWASVVDG-GAEER 214
R SD E +E +F+D WASVVD G +ER
Sbjct: 61 GFRDSDDEAEEPQFEDDNWASVVDPRGLQER 91
>gi|73696369|gb|AAZ80959.1| MADP-1 protein [Macaca mulatta]
Length = 148
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
AI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N LG R
Sbjct: 1 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGER 59
>gi|296085950|emb|CBI31391.3| unnamed protein product [Vitis vinifera]
Length = 91
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 55/96 (57%), Gaps = 34/96 (35%)
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
++GKVLN RT+ ASIAADNGRA+ FI++RVYKDKSRCYECG+
Sbjct: 1 MNGKVLNKRTLTASIAADNGRAAEFIRRRVYKDKSRCYECGEA----------------- 43
Query: 181 PMPKKLRRRSDGEDESEFDDGGWASVVDGGAEERLL 216
F+D WASVVD GA++RLL
Sbjct: 44 -----------------FEDDNWASVVDTGADQRLL 62
>gi|355558150|gb|EHH14930.1| hypothetical protein EGK_00943, partial [Macaca mulatta]
Length = 147
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
I+ K L GR + ASIA NGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N LG R
Sbjct: 1 INNKQLFGRVIKASIAIHNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGER 58
>gi|395538128|ref|XP_003771037.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Sarcophilus harrisii]
Length = 153
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 124 KVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
K L GR + ASIA DNGRA+ FI++R Y DKSRCYECG+ GHLSY CP+N LG
Sbjct: 11 KQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSRCYECGETGHLSYACPKNVLG 63
>gi|432105675|gb|ELK31869.1| Dual specificity mitogen-activated protein kinase kinase 4, partial
[Myotis davidii]
Length = 453
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 49/58 (84%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV 109
SGGLAP KSTVYVSNL +LTN+DL+ +FS +GK+ +VTV+KD+ TR+S+GVA I F+
Sbjct: 2 SGGLAPRKSTVYVSNLPSSLTNNDLYWIFSKYGKVVKVTVMKDKDTRESKGVAPIFFL 59
>gi|71162370|sp|Q8BL97.1|SRSF7_MOUSE RecName: Full=Serine/arginine-rich splicing factor 7; AltName:
Full=Splicing factor, arginine/serine-rich 7
gi|26337671|dbj|BAC32521.1| unnamed protein product [Mus musculus]
Length = 267
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 38 SETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 92
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 93 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148
>gi|148706561|gb|EDL38508.1| mCG17902, isoform CRA_g [Mus musculus]
Length = 165
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 37 SETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 91
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 92 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 147
>gi|261330753|emb|CBH13738.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 666
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S +++S L +++T+S LH LFS FG I V+ D T +SRG+AF++FV++ DA A
Sbjct: 271 RSNLFISGLRHSVTDSGLHELFSPFGSIESAKVMLDIHTGRSRGIAFVKFVRLCDAQRAV 330
Query: 119 RAIHGKVLNGRTVNASIAADN 139
A++G + G T+ +A N
Sbjct: 331 EALNGSIFCGETITVRVAKPN 351
>gi|72393389|ref|XP_847495.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359593|gb|AAX80026.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70803525|gb|AAZ13429.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 666
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S +++S L +++T+S LH LFS FG I V+ D T +SRG+AF++FV++ DA A
Sbjct: 271 RSNLFISGLRHSVTDSGLHELFSPFGSIESAKVMLDIHTGRSRGIAFVKFVRLCDAQRAV 330
Query: 119 RAIHGKVLNGRTVNASIAADN 139
A++G + G T+ +A N
Sbjct: 331 EALNGSIFCGETITVRVAKPN 351
>gi|148706557|gb|EDL38504.1| mCG17902, isoform CRA_c [Mus musculus]
Length = 266
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 37 SETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 91
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 92 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 147
>gi|351703907|gb|EHB06826.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 166
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 43/52 (82%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
+GGLAP+K TVY+ NL ++L N+DLH +FS +GK+ ++T++KD+ TRKS+G
Sbjct: 2 NGGLAPNKRTVYLFNLAFSLKNNDLHRMFSKYGKVVKITIMKDKDTRKSKGC 53
>gi|297265840|ref|XP_002799297.1| PREDICTED: splicing factor, arginine/serine-rich 7-like isoform 2
[Macaca mulatta]
Length = 165
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPR 172
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C R
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHR 121
>gi|194374435|dbj|BAG57113.1| unnamed protein product [Homo sapiens]
Length = 165
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPR 172
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C R
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHR 121
>gi|380815574|gb|AFE79661.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
gi|383420741|gb|AFH33584.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
gi|384948776|gb|AFI37993.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
Length = 235
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|417397587|gb|JAA45827.1| Putative serine/arginine-rich splicing factor 7 [Desmodus rotundus]
Length = 235
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|348574614|ref|XP_003473085.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Cavia porcellus]
Length = 227
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|297265846|ref|XP_002799299.1| PREDICTED: splicing factor, arginine/serine-rich 7-like isoform 4
[Macaca mulatta]
Length = 208
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|354488931|ref|XP_003506619.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Cricetulus
griseus]
Length = 227
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 2 QTKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 56
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 57 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 111
>gi|449274550|gb|EMC83651.1| Splicing factor, arginine/serine-rich 7, partial [Columba livia]
Length = 226
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL S+L FS +G + V + R G AF++F DA A
Sbjct: 1 ETKVYVGNLGTGAGKSELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 55
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 56 RGLDGKVICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 110
>gi|326915074|ref|XP_003203846.1| PREDICTED: hypothetical protein LOC100542161 [Meleagris gallopavo]
Length = 273
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
L +++ VYV NL +L FS +G + V + R G AF++F DA
Sbjct: 39 LPCAETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDA 93
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
A R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 94 EDAVRGLDGKVICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 152
>gi|72534660|ref|NP_001026854.1| serine/arginine-rich splicing factor 7 isoform 1 [Homo sapiens]
gi|307133718|ref|NP_001182515.1| splicing factor, arginine/serine-rich 7 [Macaca mulatta]
gi|307133726|ref|NP_001182519.1| splicing factor, arginine/serine-rich 7 [Pongo abelii]
gi|296224047|ref|XP_002757879.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Callithrix jacchus]
gi|332227248|ref|XP_003262805.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1
[Nomascus leucogenys]
gi|332813155|ref|XP_515421.3| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2 [Pan
troglodytes]
gi|397493583|ref|XP_003817683.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1 [Pan
paniscus]
gi|397493585|ref|XP_003817684.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2 [Pan
paniscus]
gi|402890618|ref|XP_003908580.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1 [Papio
anubis]
gi|403269672|ref|XP_003926840.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1
[Saimiri boliviensis boliviensis]
gi|426335282|ref|XP_004029157.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1
[Gorilla gorilla gorilla]
gi|3929380|sp|Q16629.1|SRSF7_HUMAN RecName: Full=Serine/arginine-rich splicing factor 7; AltName:
Full=Splicing factor 9G8; AltName: Full=Splicing factor,
arginine/serine-rich 7
gi|506402|gb|AAA35495.1| 9G8 splicing factor [Homo sapiens]
gi|950424|gb|AAA88098.1| splicing factor, arginine/serine-rich 7 [Homo sapiens]
gi|12654349|gb|AAH00997.1| Splicing factor, arginine/serine-rich 7, 35kDa [Homo sapiens]
gi|16924200|gb|AAH17369.1| Splicing factor, arginine/serine-rich 7, 35kDa [Homo sapiens]
gi|17389794|gb|AAH17908.1| Splicing factor, arginine/serine-rich 7, 35kDa [Homo sapiens]
gi|18490620|gb|AAH22328.1| Splicing factor, arginine/serine-rich 7, 35kDa [Homo sapiens]
gi|27369421|gb|AAN87842.1| arginine/serine-rich splicing factor 7 type B [Homo sapiens]
gi|30582329|gb|AAP35391.1| splicing factor, arginine/serine-rich 7, 35kDa [Homo sapiens]
gi|46981983|gb|AAT08040.1| aging-associated protein 3 [Homo sapiens]
gi|61361883|gb|AAX42119.1| splicing factor arginine/serine-rich 7 [synthetic construct]
gi|61361888|gb|AAX42120.1| splicing factor arginine/serine-rich 7 [synthetic construct]
gi|62702176|gb|AAX93102.1| unknown [Homo sapiens]
gi|67970972|dbj|BAE01828.1| unnamed protein product [Macaca fascicularis]
gi|90076474|dbj|BAE87917.1| unnamed protein product [Macaca fascicularis]
gi|119620771|gb|EAX00366.1| splicing factor, arginine/serine-rich 7, 35kDa, isoform CRA_d [Homo
sapiens]
gi|261858750|dbj|BAI45897.1| splicing factor, arginine/serine-rich 7, 35kDa [synthetic
construct]
gi|292698389|dbj|BAI99737.1| splicing factor, arginine/serine-rich 7 [Homo sapiens]
gi|355565621|gb|EHH22050.1| hypothetical protein EGK_05239 [Macaca mulatta]
gi|355751260|gb|EHH55515.1| hypothetical protein EGM_04737 [Macaca fascicularis]
gi|380815572|gb|AFE79660.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
gi|383420743|gb|AFH33585.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
gi|384948778|gb|AFI37994.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
gi|410213320|gb|JAA03879.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
gi|410251182|gb|JAA13558.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
gi|410299022|gb|JAA28111.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
Length = 238
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|30584739|gb|AAP36622.1| Homo sapiens splicing factor, arginine/serine-rich 7, 35kDa
[synthetic construct]
gi|60653769|gb|AAX29578.1| splicing factor arginine/serine-rich 7 35kDa [synthetic construct]
gi|60653771|gb|AAX29579.1| splicing factor arginine/serine-rich 7 35kDa [synthetic construct]
Length = 239
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|348574612|ref|XP_003473084.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Cavia porcellus]
Length = 235
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|148706559|gb|EDL38506.1| mCG17902, isoform CRA_e [Mus musculus]
gi|149050605|gb|EDM02778.1| rCG61762, isoform CRA_g [Rattus norvegicus]
Length = 215
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|431912751|gb|ELK14769.1| Splicing factor, arginine/serine-rich 7 [Pteropus alecto]
Length = 235
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|77735509|ref|NP_001029449.1| serine/arginine-rich splicing factor 7 [Bos taurus]
gi|122146164|sp|Q3T106.1|SRSF7_BOVIN RecName: Full=Serine/arginine-rich splicing factor 7; AltName:
Full=Splicing factor, arginine/serine-rich 7
gi|74354545|gb|AAI02185.1| Splicing factor, arginine/serine-rich 7, 35kDa [Bos taurus]
gi|296482569|tpg|DAA24684.1| TPA: splicing factor, arginine/serine-rich 7 [Bos taurus]
Length = 235
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|306774101|ref|NP_001182415.1| serine/arginine-rich splicing factor 7 isoform 3 [Mus musculus]
Length = 227
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|306774098|ref|NP_001182414.1| serine/arginine-rich splicing factor 7 isoform 2 [Mus musculus]
gi|26350021|dbj|BAC38650.1| unnamed protein product [Mus musculus]
Length = 235
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|395846036|ref|XP_003795721.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1
[Otolemur garnettii]
gi|351715512|gb|EHB18431.1| Splicing factor, arginine/serine-rich 7 [Heterocephalus glaber]
Length = 238
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|344288799|ref|XP_003416134.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Loxodonta africana]
Length = 238
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|306482694|ref|NP_001182375.1| serine/arginine-rich splicing factor 7 isoform 2 [Homo sapiens]
gi|297265844|ref|XP_002799298.1| PREDICTED: splicing factor, arginine/serine-rich 7-like isoform 3
[Macaca mulatta]
gi|332227250|ref|XP_003262806.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2
[Nomascus leucogenys]
gi|390474551|ref|XP_003734800.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Callithrix jacchus]
gi|402890620|ref|XP_003908581.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2 [Papio
anubis]
gi|403269674|ref|XP_003926841.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2
[Saimiri boliviensis boliviensis]
gi|426335284|ref|XP_004029158.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2
[Gorilla gorilla gorilla]
gi|119620770|gb|EAX00365.1| splicing factor, arginine/serine-rich 7, 35kDa, isoform CRA_c [Homo
sapiens]
gi|383420739|gb|AFH33583.1| serine/arginine-rich splicing factor 7 isoform 2 [Macaca mulatta]
gi|384948774|gb|AFI37992.1| serine/arginine-rich splicing factor 7 isoform 2 [Macaca mulatta]
gi|387542062|gb|AFJ71658.1| serine/arginine-rich splicing factor 7 isoform 2 [Macaca mulatta]
gi|410213318|gb|JAA03878.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
gi|410251180|gb|JAA13557.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
gi|410299020|gb|JAA28110.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
Length = 226
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|348574616|ref|XP_003473086.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 3
[Cavia porcellus]
Length = 223
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|148706566|gb|EDL38513.1| mCG17902, isoform CRA_l [Mus musculus]
Length = 243
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 18 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 72
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 73 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 127
>gi|307133722|ref|NP_001182517.1| splicing factor, arginine/serine-rich 7 [Equus caballus]
gi|73980752|ref|XP_532939.2| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2 [Canis
lupus familiaris]
gi|301777346|ref|XP_002924090.1| PREDICTED: splicing factor, arginine/serine-rich 7-like [Ailuropoda
melanoleuca]
gi|311252785|ref|XP_003125258.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Sus scrofa]
gi|410955427|ref|XP_003984355.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1 [Felis
catus]
gi|426223793|ref|XP_004006058.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1 [Ovis
aries]
gi|440907651|gb|ELR57771.1| Serine/arginine-rich splicing factor 7 [Bos grunniens mutus]
Length = 238
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|119620768|gb|EAX00363.1| splicing factor, arginine/serine-rich 7, 35kDa, isoform CRA_a [Homo
sapiens]
gi|148706558|gb|EDL38505.1| mCG17902, isoform CRA_d [Mus musculus]
gi|149050600|gb|EDM02773.1| rCG61762, isoform CRA_b [Rattus norvegicus]
Length = 137
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|306774103|ref|NP_001182416.1| serine/arginine-rich splicing factor 7 isoform 4 [Mus musculus]
Length = 223
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|395846038|ref|XP_003795722.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2
[Otolemur garnettii]
Length = 226
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|344288801|ref|XP_003416135.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Loxodonta africana]
Length = 226
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|350538991|ref|NP_001232123.1| putative splicing factor arginine/serine-rich 7 variant 2
[Taeniopygia guttata]
gi|197127816|gb|ACH44314.1| putative splicing factor arginine/serine-rich 7 variant 2
[Taeniopygia guttata]
Length = 250
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|194386188|dbj|BAG59658.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEGPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|22122585|ref|NP_666195.1| serine/arginine-rich splicing factor 7 isoform 1 [Mus musculus]
gi|306922410|ref|NP_001034124.2| splicing factor, arginine/serine-rich 7 [Rattus norvegicus]
gi|19343869|gb|AAH25529.1| Splicing factor, arginine/serine-rich 7 [Mus musculus]
gi|74202235|dbj|BAE23499.1| unnamed protein product [Mus musculus]
gi|74212267|dbj|BAE40291.1| unnamed protein product [Mus musculus]
gi|148706555|gb|EDL38502.1| mCG17902, isoform CRA_a [Mus musculus]
gi|149050602|gb|EDM02775.1| rCG61762, isoform CRA_d [Rattus norvegicus]
Length = 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|363731484|ref|XP_003640982.1| PREDICTED: uncharacterized protein LOC100859609 [Gallus gallus]
Length = 250
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|311252787|ref|XP_003125259.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Sus scrofa]
gi|345782230|ref|XP_003432237.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 1 [Canis
lupus familiaris]
gi|410955429|ref|XP_003984356.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2 [Felis
catus]
gi|426223795|ref|XP_004006059.1| PREDICTED: serine/arginine-rich splicing factor 7 isoform 2 [Ovis
aries]
Length = 226
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|344237407|gb|EGV93510.1| Splicing factor, arginine/serine-rich 7 [Cricetulus griseus]
Length = 227
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NL +L FS +G + V + R G AF++F DA A R +
Sbjct: 2 VYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAVRGL 56
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 57 DGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 108
>gi|55926178|ref|NP_001007487.1| serine/arginine-rich splicing factor 7 [Xenopus (Silurana)
tropicalis]
gi|51262158|gb|AAH79925.1| splicing factor, arginine/serine-rich 7, 35kDa [Xenopus (Silurana)
tropicalis]
Length = 234
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 EAKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDTRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPSDRCYECGEKGHYAYDC 119
>gi|351695982|gb|EHA98900.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Heterocephalus glaber]
Length = 140
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 41/48 (85%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK 99
SGGLAPSKST YVSNL ++LTN+DL+ +FS +G++ +V ++KD+ TRK
Sbjct: 2 SGGLAPSKSTPYVSNLPFSLTNNDLYRIFSKYGEVVKVIIMKDKDTRK 49
>gi|149422794|ref|XP_001506905.1| PREDICTED: serine/arginine-rich splicing factor 7-like, partial
[Ornithorhynchus anatinus]
Length = 228
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VYV NL +L FS +G + V + R G AF++F DA A R
Sbjct: 1 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAVR 55
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
+ GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 56 GLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 109
>gi|148706562|gb|EDL38509.1| mCG17902, isoform CRA_h [Mus musculus]
gi|149050603|gb|EDM02776.1| rCG61762, isoform CRA_e [Rattus norvegicus]
Length = 226
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|281350478|gb|EFB26062.1| hypothetical protein PANDA_013342 [Ailuropoda melanoleuca]
Length = 120
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 1 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 55
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 56 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 110
>gi|355718930|gb|AES06434.1| splicing factor, arginine/serine-rich 7, 35kDa [Mustela putorius
furo]
Length = 199
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 19 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 73
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 74 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 128
>gi|327262671|ref|XP_003216147.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Anolis carolinensis]
Length = 235
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|150387449|gb|ABR68245.1| arginine/serine-rich 7 splicing factor [Cervus elaphus]
Length = 206
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 5 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 59
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 60 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 114
>gi|126304540|ref|XP_001362853.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Monodelphis
domestica]
Length = 233
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|148706556|gb|EDL38503.1| mCG17902, isoform CRA_b [Mus musculus]
gi|149050601|gb|EDM02774.1| rCG61762, isoform CRA_c [Rattus norvegicus]
Length = 209
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 63
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 64 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|15928796|gb|AAH14857.1| Sfrs7 protein [Mus musculus]
Length = 226
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 63
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 64 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|119620769|gb|EAX00364.1| splicing factor, arginine/serine-rich 7, 35kDa, isoform CRA_b [Homo
sapiens]
Length = 132
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|417407851|gb|JAA50519.1| Putative splicing factor arginine/serine-rich 7 35kda isoform cra
b, partial [Desmodus rotundus]
Length = 123
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 1 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 55
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 56 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 110
>gi|148223523|ref|NP_001086618.1| MGC78845 protein [Xenopus laevis]
gi|50603914|gb|AAH77185.1| MGC78845 protein [Xenopus laevis]
Length = 224
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 EAKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDTRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPSDRCYECGEKGHYAYDC 119
>gi|147900017|ref|NP_001086749.1| serine/arginine-rich splicing factor 7 [Xenopus laevis]
gi|50603927|gb|AAH77393.1| MGC81677 protein [Xenopus laevis]
Length = 234
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 EAKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDTRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPSDRCYECGEKGHYAYDC 119
>gi|346468811|gb|AEO34250.1| hypothetical protein [Amblyomma maculatum]
Length = 161
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P VYV L + T +L F +G + V V R G AF++F DA
Sbjct: 17 CPIDCKVYVGELGNSGTKHELEEAFGYYGPLRNVWV-----ARSPPGFAFVEFEDARDAR 71
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A RA+ GK+L GR V ++ R S R ++ RCY+CG+ GH + +C
Sbjct: 72 DAVRALDGKMLCGRRVRVELSTGKSRNSYRGSSRPFQPTDRCYDCGERGHYARDC 126
>gi|395508189|ref|XP_003758396.1| PREDICTED: uncharacterized protein LOC100934570 [Sarcophilus
harrisii]
Length = 235
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 11 TETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 65
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 66 VRGLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 121
>gi|110767678|ref|XP_001122800.1| PREDICTED: serine/arginine-rich splicing factor 7 [Apis mellifera]
gi|380013414|ref|XP_003690755.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Apis
florea]
Length = 206
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PS VYV +L T +L FS +G + V V R G AF++F DA
Sbjct: 8 PSDCKVYVGDLGSGATKQELEDAFSYYGSLRNVWV-----ARNPPGFAFVEFEDARDAED 62
Query: 117 AARAIHGKVLNGRTVNASIAADNGRA---SSFIKK---RVYKDKSRCYECGDEGHLSYEC 170
A R + G+ + GR A + NGR S+ ++ R++ + RCYECG+ GH + C
Sbjct: 63 AIRGLDGRTICGRR--ARVEPSNGRRLRDRSYFRRGIGRLFHPEDRCYECGERGHYARNC 120
Query: 171 PRNQ 174
R++
Sbjct: 121 QRHR 124
>gi|68534386|gb|AAH99175.1| Splicing factor, arginine/serine-rich 7 [Rattus norvegicus]
gi|149050598|gb|EDM02771.1| rCG61762, isoform CRA_a [Rattus norvegicus]
gi|149050599|gb|EDM02772.1| rCG61762, isoform CRA_a [Rattus norvegicus]
Length = 157
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|325303436|tpg|DAA34137.1| TPA_exp: alternative splicing factor SRp20/9G8 [Amblyomma
variegatum]
Length = 192
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P VYV L + T +L F +G + V V R G AF++F DA
Sbjct: 8 CPIDCKVYVGELGNSGTKHELEEAFGYYGPLRNVWV-----ARSPPGFAFVEFEDPRDAR 62
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A RA+ GK+L GR V ++ R S R ++ RCY+CG+ GH + +C
Sbjct: 63 DAVRALDGKMLCGRRVRVELSTGKSRNSYRGSSRPFQPTDRCYDCGERGHYARDC 117
>gi|20071765|gb|AAH27391.1| Sfrs7 protein [Mus musculus]
gi|148706560|gb|EDL38507.1| mCG17902, isoform CRA_f [Mus musculus]
Length = 157
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|26328639|dbj|BAC28058.1| unnamed protein product [Mus musculus]
Length = 157
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|242002226|ref|XP_002435756.1| RSZp22 protein, putative [Ixodes scapularis]
gi|215499092|gb|EEC08586.1| RSZp22 protein, putative [Ixodes scapularis]
Length = 199
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P VYV L + T +L F +G + V V R G AF++F DA
Sbjct: 8 CPVDCKVYVGELGNSGTKHELEESFGYYGPLRNVWV-----ARSPPGFAFVEFEDPRDAR 62
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A RA+ GK+L GR V ++ R S R ++ RCY+CG+ GH + +C
Sbjct: 63 DAVRALDGKMLCGRRVRVELSTGKSRNSYRGSSRPFQPTDRCYDCGERGHYARDC 117
>gi|328908705|gb|AEB61020.1| serine/arginine-rich splicing factor 7-like protein [Equus
caballus]
Length = 238
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + + G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAGNPP-----GFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|148706565|gb|EDL38512.1| mCG17902, isoform CRA_k [Mus musculus]
Length = 165
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 18 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 72
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 73 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 127
>gi|383850973|ref|XP_003701038.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Megachile
rotundata]
Length = 206
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PS VYV +L + T +L FS +G + V V R G AF++F DA
Sbjct: 8 PSDCKVYVGDLGSSATKEELEDAFSYYGSLRNVWV-----ARNPPGFAFVEFEDARDAED 62
Query: 117 AARAIHGKVLNGRTVNASIAADNGRA---SSFIKK---RVYKDKSRCYECGDEGHLSYEC 170
A R + G+++ GR A + NGR + ++ R++ + RCYECG++GH + C
Sbjct: 63 AIRGLDGRIICGRR--ARVEPSNGRRLRDRGYFRRGIGRLFHPEDRCYECGEKGHYARNC 120
Query: 171 PR 172
R
Sbjct: 121 QR 122
>gi|148706563|gb|EDL38510.1| mCG17902, isoform CRA_i [Mus musculus]
Length = 205
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|327262673|ref|XP_003216148.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Anolis carolinensis]
Length = 225
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|218197725|gb|EEC80152.1| hypothetical protein OsI_21961 [Oryza sativa Indica Group]
Length = 264
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T +L F FG + V V RK G AFI F DA A R I
Sbjct: 83 VYVGNLDPRVTARELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAQDAIRDI 137
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S A +GR + R +S+CYECG+ GH + EC
Sbjct: 138 DGK--NGWRVELSRNASSGRGG---RDRYGSSESKCYECGETGHFAREC 181
>gi|47225325|emb|CAG09825.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G+IA V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQFFSKYGRIAEVILMKDRETNKSRGFAFVTFESPSDAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKNIKVEQA 84
>gi|410339103|gb|JAA38498.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
gi|410339105|gb|JAA38499.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
Length = 238
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + + + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARCPFDPNDRCYECGEKGHYAYDC 119
>gi|222635100|gb|EEE65232.1| hypothetical protein OsJ_20394 [Oryza sativa Japonica Group]
Length = 264
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T +L F FG + V V RK G AFI F DA A R I
Sbjct: 83 VYVGNLDPRVTARELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAQDAIRDI 137
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S A +GR + R +S+CYECG+ GH + EC
Sbjct: 138 DGK--NGWRVELSRNASSGRGG---RDRYGSSESKCYECGETGHFAREC 181
>gi|115466838|ref|NP_001057018.1| Os06g0187900 [Oryza sativa Japonica Group]
gi|75322869|sp|Q69KL9.1|RZ21A_ORYSJ RecName: Full=Serine/arginine-rich splicing factor RSZ21A; AltName:
Full=RS-containing zinc finger protein 21A;
Short=Os-RSZ21a; Short=Os-RSZp21a
gi|51091721|dbj|BAD36521.1| putative splicing factor, arginine/serine-rich 7 [Oryza sativa
Japonica Group]
gi|55773877|dbj|BAD72462.1| putative splicing factor, arginine/serine-rich 7 [Oryza sativa
Japonica Group]
gi|113595058|dbj|BAF18932.1| Os06g0187900 [Oryza sativa Japonica Group]
gi|215686646|dbj|BAG88899.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701257|dbj|BAG92681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 185
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T +L F FG + V V RK G AFI F DA A R I
Sbjct: 4 VYVGNLDPRVTARELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAQDAIRDI 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S A +GR + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELSRNASSGRGG---RDRYGSSESKCYECGETGHFAREC 102
>gi|410913463|ref|XP_003970208.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Takifugu rubripes]
Length = 391
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G+IA V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFAFVTFESPSDAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKNIKVEQA 84
>gi|149050604|gb|EDM02777.1| rCG61762, isoform CRA_f [Rattus norvegicus]
Length = 207
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|410949903|ref|XP_003981656.1| PREDICTED: cold-inducible RNA-binding protein [Felis catus]
Length = 172
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+IA V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|410913465|ref|XP_003970209.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Takifugu rubripes]
Length = 383
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G+IA V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFAFVTFESPSDAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKNIKVEQA 84
>gi|395513325|ref|XP_003760877.1| PREDICTED: cold-inducible RNA-binding protein [Sarcophilus
harrisii]
Length = 172
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+IA V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|410339107|gb|JAA38500.1| serine/arginine-rich splicing factor 7 [Pan troglodytes]
Length = 226
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + + + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARCPFDPNDRCYECGEKGHYAYDC 119
>gi|334326698|ref|XP_001365067.2| PREDICTED: cold-inducible RNA-binding protein-like [Monodelphis
domestica]
Length = 172
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+IA V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|225714302|gb|ACO12997.1| Splicing factor, arginine/serine-rich 7 [Lepeophtheirus salmonis]
Length = 306
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V++LD + T D+ +F FG + + + R AF+ F DA R+
Sbjct: 165 IHVADLDVSATKRDMEKVFGKFGPLKEIWM-----ARSVPCFAFVVFRYREDAEDGVRSA 219
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERP 181
G ++GR + + A + +R + RCY+CGD GH S +CP + G + P
Sbjct: 220 DGVEISGRRIRVTHARPRTKGRG---RRGFNPNMRCYQCGDRGHFSRDCPDTKYGYKRPP 276
Query: 182 MPKKLRRRSDGEDESEFDDGGWASVVD 208
P+ RR + + +D GG D
Sbjct: 277 SPRYSSRR---DSDRHYDRGGGYDRFD 300
>gi|21749793|dbj|BAC03661.1| unnamed protein product [Homo sapiens]
Length = 137
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPRFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|198435747|ref|XP_002131795.1| PREDICTED: similar to ribonucleoprotein antigen [Ciona
intestinalis]
Length = 461
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T++VS ++Y T S L F T+GKI +VT++KD AT K RG AF++F + D +A ++
Sbjct: 105 TLFVSRINYDTTESKLRREFETYGKIRKVTIVKDVATGKPRGYAFVEFDRERDMHTAYKS 164
Query: 121 IHGKVLNGRTV 131
GK ++GR V
Sbjct: 165 ADGKKIDGRRV 175
>gi|449274552|gb|EMC83653.1| Splicing factor, arginine/serine-rich 7, partial [Columba livia]
Length = 197
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL S+L FS +G + V + R G AF++F DA A
Sbjct: 1 ETKVYVGNLGTGAGKSELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 55
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
+ GK++ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 56 LGLDGKIICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 110
>gi|357110649|ref|XP_003557129.1| PREDICTED: RNA-binding protein 28-like [Brachypodium distachyon]
Length = 958
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
GSGG PS TV+VSNL Y +SDL T+FS G + R ++ + + SRG F+QF
Sbjct: 26 GSGGHTPS--TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSDTSRGFGFVQFAT 83
Query: 111 IPDALSAARAIHGKVLNGRTVNASIA 136
+ DA A + +G + GR + +A
Sbjct: 84 VQDAERAIQQKNGYTVAGRKIRVKLA 109
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V V NL + +T ++ +FS+ G + V++ + KS+G AF+ F + DA +A + +
Sbjct: 283 VIVRNLPFKITLKEIMDVFSSEGFVWDVSIPQKSDDGKSKGFAFVSFTRKQDAENAIKNV 342
Query: 122 HGKVLNGRTV 131
+GKV+ RTV
Sbjct: 343 NGKVIAKRTV 352
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
TV++SNL + ++ ++ FS FGK+ + + T++ G F++F
Sbjct: 524 TVFISNLPFDISKEEVTERFSVFGKVQSFFPVLHKLTKRPIGTGFLKF 571
>gi|197128630|gb|ACH45128.1| putative cold inducible RNA binding protein variant 2c [Taeniopygia
guttata]
Length = 175
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|343472240|emb|CCD15548.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 665
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++VS L + +T+ LH LF+ FG+I V+ D T +SRG+AF++F ++ DA AA
Sbjct: 277 RSNLFVSGLRHNVTDVGLHDLFAPFGEIESAKVMLDIHTGRSRGIAFVKFAKVSDAQKAA 336
Query: 119 RAIHGKVLNGRTVNASIAADN 139
A++ NG + +A N
Sbjct: 337 EALNSTAFNGENITVRVAKPN 357
>gi|126325323|ref|XP_001367196.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Monodelphis domestica]
Length = 388
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L +F +G+I V ++KDR TRKSRG AFI F DA AAR +
Sbjct: 10 LFVGGLNIETNEKALEAVFGKYGRIVEVLLMKDRETRKSRGFAFITFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK+L+G+++ A
Sbjct: 70 NGKLLDGKSIKVEQA 84
>gi|119589927|gb|EAW69521.1| cold inducible RNA binding protein, isoform CRA_b [Homo sapiens]
Length = 184
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 13 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 72
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 73 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 100
>gi|350538255|ref|NP_001232562.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128621|gb|ACH45119.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|325185730|emb|CCA20211.1| conserved unknown protein putative [Albugo laibachii Nc14]
Length = 465
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 PANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR 88
P + ++S +DV SSG H + SGG+ V+V L ++T D F FG+I
Sbjct: 178 PRDKTASGPSDVRSSGAHGRGN-SGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITD 236
Query: 89 VTVLKDRATRKSRGVAFIQFVQ---IPDALSAARAIHGKVL 126
V+ DR T++SRG F+ F + + + +S +HGKV+
Sbjct: 237 AVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVV 277
>gi|387018172|gb|AFJ51204.1| Cold-inducible RNA-binding protein-like [Crotalus adamanteus]
Length = 172
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|281341352|gb|EFB16936.1| hypothetical protein PANDA_012739 [Ailuropoda melanoleuca]
Length = 167
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|348550387|ref|XP_003461013.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Cavia porcellus]
Length = 173
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + +++ L + L +FS +G+IA V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFIGGLSFDTNEQSLEEVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAAD 138
A A++GK ++GR + A AAD
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKAAD 87
>gi|426386443|ref|XP_004059694.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Gorilla
gorilla gorilla]
gi|426386445|ref|XP_004059695.1| PREDICTED: cold-inducible RNA-binding protein isoform 3 [Gorilla
gorilla gorilla]
Length = 168
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|344307815|ref|XP_003422574.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Loxodonta africana]
Length = 169
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|18415425|ref|NP_567594.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|51971865|dbj|BAD44597.1| putative protein [Arabidopsis thaliana]
gi|107738041|gb|ABF83619.1| At4g20030 [Arabidopsis thaliana]
gi|332658864|gb|AEE84264.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 152
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%)
Query: 22 YASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFS 81
+++T + P+ +SSSS + K K S P S + V NL ++ + L FS
Sbjct: 2 WSATLSFPSFVASSSSLPNYRNLRFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFS 61
Query: 82 TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGR 141
FG+IA V ++KD A ++S+G AFIQF DA A + ++ NGR + IA R
Sbjct: 62 AFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGKR 121
>gi|351699548|gb|EHB02467.1| Cold-inducible RNA-binding protein, partial [Heterocephalus glaber]
Length = 167
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|426229493|ref|XP_004008825.1| PREDICTED: cold-inducible RNA-binding protein [Ovis aries]
Length = 171
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|71668509|gb|AAZ38826.1| aggrecan promoter binding protein [Gallus gallus]
Length = 172
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|301776322|ref|XP_002923559.1| PREDICTED: cold-inducible RNA-binding protein-like [Ailuropoda
melanoleuca]
Length = 172
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|327279530|ref|XP_003224509.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 148
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + +++ L + +L LFS +G IA V V+KDR T++SRG FI + + DA
Sbjct: 1 MASDEGKLFIGGLSFDTNEQNLEQLFSPYGDIAEVVVVKDRETQRSRGFGFITYCRPEDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
A RA++G+ ++GR + A
Sbjct: 61 KDAMRAMNGESVDGRQIRVDQA 82
>gi|326918654|ref|XP_003205603.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Meleagris gallopavo]
Length = 170
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|161408091|dbj|BAF94149.1| cold-inducible RNA binding protein [Alligator mississippiensis]
Length = 165
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|449273022|gb|EMC82651.1| Cold-inducible RNA-binding protein [Columba livia]
Length = 153
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|325181594|emb|CCA16044.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325191994|emb|CCA26461.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 236
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 31 NPSSSSSADVTSSGPHKKSKGS--GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR 88
N SS + + S+ P S G +A + +YV+NL + +T+ +L LF FG++ +
Sbjct: 43 NKSSGNEGERRSTSPSSNQMASEHGDIANPGNNLYVANLAHRVTDEELRQLFEKFGRLEK 102
Query: 89 VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
++ D +R+SRG AF+ F + DA A + ++GK + GR + A
Sbjct: 103 CEIIIDPISRESRGFAFVTFEDVRDASDAVQELNGKDIQGRRMRVEHA 150
>gi|126631485|gb|AAI33852.1| Sfrs7 protein [Danio rerio]
Length = 210
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L F +G + V + ++ A G AF++F DA +
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPA-----GFAFVEFEDPRDAEDSV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSF---IKKRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDHPPSRRPFDPNDRCYECGEKGHYAYDC 119
>gi|4502847|ref|NP_001271.1| cold-inducible RNA-binding protein [Homo sapiens]
gi|197102572|ref|NP_001124692.1| cold-inducible RNA-binding protein [Pongo abelii]
gi|386782231|ref|NP_001248245.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|397465267|ref|XP_003804430.1| PREDICTED: cold-inducible RNA-binding protein [Pan paniscus]
gi|426386441|ref|XP_004059693.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Gorilla
gorilla gorilla]
gi|5921786|sp|Q14011.1|CIRBP_HUMAN RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|75070980|sp|Q5RF83.1|CIRBP_PONAB RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|1060893|dbj|BAA11212.1| CIRP [Homo sapiens]
gi|2541973|gb|AAC51787.1| DNA damage-inducible RNA binding protein [Homo sapiens]
gi|2924760|gb|AAC04895.1| CIRP [Homo sapiens]
gi|12653269|gb|AAH00403.1| Cold inducible RNA binding protein [Homo sapiens]
gi|12654167|gb|AAH00901.1| Cold inducible RNA binding protein [Homo sapiens]
gi|30583259|gb|AAP35874.1| cold inducible RNA binding protein [Homo sapiens]
gi|55725420|emb|CAH89574.1| hypothetical protein [Pongo abelii]
gi|60654971|gb|AAX32049.1| cold inducible RNA binding protein [synthetic construct]
gi|67970531|dbj|BAE01608.1| unnamed protein product [Macaca fascicularis]
gi|119589926|gb|EAW69520.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|119589929|gb|EAW69523.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|157928054|gb|ABW03323.1| cold inducible RNA binding protein [synthetic construct]
gi|157928769|gb|ABW03670.1| cold inducible RNA binding protein [synthetic construct]
gi|197692151|dbj|BAG70039.1| cold inducible RNA binding protein [Homo sapiens]
gi|197692397|dbj|BAG70162.1| cold inducible RNA binding protein [Homo sapiens]
gi|261860266|dbj|BAI46655.1| cold inducible RNA binding protein [synthetic construct]
gi|343958578|dbj|BAK63144.1| cold-inducible RNA-binding protein [Pan troglodytes]
gi|383415637|gb|AFH31032.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|384940732|gb|AFI33971.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|410224774|gb|JAA09606.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410260066|gb|JAA17999.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410289136|gb|JAA23168.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343217|gb|JAA40555.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343219|gb|JAA40556.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343223|gb|JAA40558.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 172
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|225711580|gb|ACO11636.1| Splicing factor, arginine/serine-rich 7 [Caligus rogercresseyi]
Length = 332
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V++LD + + D+ +F FG + + + R AF F DA A R
Sbjct: 192 IHVADLDVSASKRDMEKVFGKFGPLKEIWM-----ARSVPCFAFCVFRYREDAEDAVRTS 246
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERP 181
G ++GR + + A + +R + RCY+CGD GH S +CP + G + P
Sbjct: 247 DGTEVSGRRIRVTHARPRTKGRG---RRGFNPNMRCYQCGDRGHFSRDCPDTKYGYKRPP 303
Query: 182 MPKKLRRRSDGEDESEFDDG 201
P+ RR G+ + +D G
Sbjct: 304 SPRYGRR---GDSDRHYDRG 320
>gi|197128622|gb|ACH45120.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEESLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|30585341|gb|AAP36943.1| Homo sapiens cold inducible RNA binding protein [synthetic
construct]
gi|61371531|gb|AAX43684.1| cold inducible RNA binding protein [synthetic construct]
gi|61371536|gb|AAX43685.1| cold inducible RNA binding protein [synthetic construct]
Length = 173
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|402903547|ref|XP_003914625.1| PREDICTED: cold-inducible RNA-binding protein [Papio anubis]
Length = 199
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 28 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 87
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 88 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 115
>gi|197128619|gb|ACH45117.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128620|gb|ACH45118.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128623|gb|ACH45121.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128625|gb|ACH45123.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128627|gb|ACH45125.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128628|gb|ACH45126.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|296232406|ref|XP_002761576.1| PREDICTED: cold-inducible RNA-binding protein [Callithrix jacchus]
Length = 172
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|197128626|gb|ACH45124.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|21554348|gb|AAM63455.1| unknown [Arabidopsis thaliana]
Length = 152
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%)
Query: 22 YASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFS 81
+++T + P+ +SSSS + K K S P S + V NL ++ + L FS
Sbjct: 2 WSATLSFPSFVASSSSLPNYRNRRFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFS 61
Query: 82 TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGR 141
FG+IA V ++KD A ++S+G AFIQF DA A + ++ NGR + IA R
Sbjct: 62 AFGEIAEVKLIKDEAMQRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGKR 121
>gi|403308137|ref|XP_003944528.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Saimiri
boliviensis boliviensis]
gi|403308139|ref|XP_003944529.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Saimiri
boliviensis boliviensis]
Length = 172
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|73987334|ref|XP_868600.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Canis
lupus familiaris]
Length = 185
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|432101154|gb|ELK29438.1| Cold-inducible RNA-binding protein [Myotis davidii]
Length = 204
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|90077754|dbj|BAE88557.1| unnamed protein product [Macaca fascicularis]
Length = 172
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|395831301|ref|XP_003788741.1| PREDICTED: cold-inducible RNA-binding protein [Otolemur garnettii]
Length = 172
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + +++ L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFIGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|327290660|ref|XP_003230040.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 176
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|71897051|ref|NP_001026518.1| cold-inducible RNA-binding protein [Gallus gallus]
gi|53128363|emb|CAG31295.1| hypothetical protein RCJMB04_4m1 [Gallus gallus]
Length = 190
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|428166035|gb|EKX35018.1| translation initiation factor 3, subunit G [Guillardia theta
CCMP2712]
Length = 351
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 45 PHKKSK-GSGG-LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRG 102
PH +++ G GG K+T+ V+N+ T D+H LF FG IARV+V DRAT + RG
Sbjct: 179 PHMRNRDGFGGPQEEEKATLRVTNVSTDATREDMHELFKQFGPIARVSVPTDRATGEGRG 238
Query: 103 VAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
AFI F DA A A++G + +N A
Sbjct: 239 FAFIDFYNREDAQRAINALNGTGFDSLILNVDWA 272
>gi|71003994|ref|XP_756663.1| hypothetical protein UM00516.1 [Ustilago maydis 521]
gi|46095735|gb|EAK80968.1| hypothetical protein UM00516.1 [Ustilago maydis 521]
Length = 1077
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+T++VS L Y T +DL T+FS G + R V+ D+AT+KS+GV ++ F DA +A
Sbjct: 48 ATLFVSRLPYTATTTDLQTMFSEIGPLKRAFVVTDQATKKSKGVGYVTFAIPEDATTALE 107
Query: 120 AIHGKVLNG 128
+ GK L+G
Sbjct: 108 QLQGKSLDG 116
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
+T++V NL Y T +L LF +FG + + D+ T +S+G F+ F Q
Sbjct: 609 TTLFVRNLPYQATEEELRNLFRSFGPLRYAKITMDKTTNRSKGTGFVCFWQ 659
>gi|225423629|ref|XP_002274983.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|359473083|ref|XP_003631246.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Vitis vinifera]
gi|297738010|emb|CBI27211.3| unnamed protein product [Vitis vinifera]
gi|297738011|emb|CBI27212.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P S + V+NL YA + S L FS FG+I V V+KD+A ++ RG AFIQ+ A+
Sbjct: 35 PLASRIMVTNLSYATSKSSLQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAML 94
Query: 117 AARAIHGKVLNGRTVNASIA 136
A + K L+GR V +A
Sbjct: 95 ALENMDHKYLDGRVVCVELA 114
>gi|431922216|gb|ELK19307.1| Cold-inducible RNA-binding protein [Pteropus alecto]
Length = 220
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|242037751|ref|XP_002466270.1| hypothetical protein SORBIDRAFT_01g004800 [Sorghum bicolor]
gi|241920124|gb|EER93268.1| hypothetical protein SORBIDRAFT_01g004800 [Sorghum bicolor]
Length = 924
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G+GG S STV+VSNL Y +SDL +FS G + R ++ ++ + KSRG F+QF
Sbjct: 26 GAGG-GHSPSTVFVSNLPYTFKSSDLEAVFSEVGPVRRCFMVAEKGSEKSRGFGFVQFAT 84
Query: 111 IPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKR-------------------VY 151
+ DA A + +G + GR + +A + ++K+
Sbjct: 85 VQDADRAIQQKNGFPVAGRKIRVKLAMNRAPLKERLQKKENMQVKDSDAKDEADETAPAE 144
Query: 152 KDKSRCYECGDEGHLSYECPRNQLGPRERPM--PKKLR 187
K K + ++ E + ++ + P+E P+ P+K++
Sbjct: 145 KHKGKSHKTDPEPEQPHLLSKDAMVPKEAPIGDPEKVK 182
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + ++N ++ FS FGK+ + + T++ RG F++F
Sbjct: 502 TIFISNLPFDISNEEVTARFSVFGKVESFFPVLHKLTKRPRGTGFMKF 549
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V V NL + +T ++ +F + G + V++ S+G AF+ F + DA +A + I
Sbjct: 288 VIVRNLPFKITEKEIMDMFGSAGFVWDVSIPHKSDEGISKGFAFVSFTRKQDAENAIKNI 347
Query: 122 HGKVLNGRTV 131
+GKV+ R V
Sbjct: 348 NGKVVAKRPV 357
>gi|149034582|gb|EDL89319.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
gi|149034583|gb|EDL89320.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
Length = 176
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|417408518|gb|JAA50808.1| Putative rna-binding protein seb4 rrm superfamily, partial
[Desmodus rotundus]
Length = 193
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 22 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 81
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 82 KDAMMAMNGKSVDGRQIRVDQAG 104
>gi|327405345|ref|YP_004346183.1| RNP-1 like RNA-binding protein [Fluviicola taffensis DSM 16823]
gi|327320853|gb|AEA45345.1| RNP-1 like RNA-binding protein [Fluviicola taffensis DSM 16823]
Length = 224
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
++++V+ LD+ T L +LF +GK+ RVT+ KDR T K RG AF++ +A A
Sbjct: 2 TSIFVAKLDFNTTEEQLKSLFEDYGKVNRVTIAKDRETGKPRGFAFVEMADESEADKAIE 61
Query: 120 AIHGKVLNGRTVNASIAAD 138
A+ +NGR + A D
Sbjct: 62 ALDDSSVNGRNIAVKKADD 80
>gi|441656594|ref|XP_003277032.2| PREDICTED: cold-inducible RNA-binding protein [Nomascus leucogenys]
Length = 144
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|224046923|ref|XP_002199213.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Taeniopygia
guttata]
Length = 223
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 8 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 62
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
+ GK++ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 63 LGLDGKIICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 117
>gi|71897353|ref|NP_001026539.1| serine/arginine-rich splicing factor 7 [Gallus gallus]
gi|53127360|emb|CAG31063.1| hypothetical protein RCJMB04_1p22 [Gallus gallus]
Length = 223
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 8 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 62
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
+ GK++ G V ++ R S + + +R + RCYECG++GH +Y+C
Sbjct: 63 LGLDGKIICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDC 117
>gi|148699639|gb|EDL31586.1| cold inducible RNA binding protein, isoform CRA_b [Mus musculus]
Length = 176
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|449664731|ref|XP_002156267.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Hydra
magnipapillata]
Length = 361
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T++V +LD LT+S+L F FG+I V++D AT KS+ FI F PDA A R
Sbjct: 72 TIFVGDLDDDLTDSELRQAFEPFGEILNAKVVRDAATEKSKNYGFISFTNKPDAERAIRD 131
Query: 121 IHGKVLNGRTVNASIAA--DNGRASSFIKKRVYKDKS 155
+HG +L R + + A N + S +V+K+ S
Sbjct: 132 MHGAMLKRRPIKTNWATRNQNSKPSQLDYDQVFKEVS 168
>gi|148699638|gb|EDL31585.1| cold inducible RNA binding protein, isoform CRA_a [Mus musculus]
gi|149034578|gb|EDL89315.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
gi|149034579|gb|EDL89316.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
Length = 168
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|261824019|ref|NP_035383.2| RNA-binding motif protein, Y chromosome, family 1 member A1 [Mus
musculus]
gi|261824021|ref|NP_001159856.1| RNA-binding motif protein, Y chromosome, family 1 member A1 [Mus
musculus]
gi|395394010|ref|NP_001257442.1| predicted gene, 21677 [Mus musculus]
gi|395394015|ref|NP_001257444.1| predicted gene, 21704 [Mus musculus]
gi|395394017|ref|NP_001257445.1| predicted gene, 21708 [Mus musculus]
gi|341941874|sp|O35698.2|RBY1A_MOUSE RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member A1; AltName: Full=RNA-binding motif protein 1;
AltName: Full=Y chromosome RNA recognition motif 1
Length = 380
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F ++ DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>gi|395394021|ref|NP_001257447.1| predicted gene 4064 [Mus musculus]
Length = 380
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F ++ DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>gi|344243389|gb|EGV99492.1| Cold-inducible RNA-binding protein [Cricetulus griseus]
Length = 184
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|351721799|ref|NP_001235686.1| uncharacterized protein LOC100305971 [Glycine max]
gi|255627149|gb|ACU13919.1| unknown [Glycine max]
Length = 150
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P S + V NL Y+ + L FS FGKIA V ++KD T++S+G+AFIQ+ DA+
Sbjct: 38 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDMNTKRSKGIAFIQYTCQDDAML 97
Query: 117 AARAIHGKVLNGRTVNASIA 136
A + K GRT+ IA
Sbjct: 98 ALETMDQKDFYGRTIGVEIA 117
>gi|226502815|ref|NP_001147002.1| LOC100280612 [Zea mays]
gi|195606380|gb|ACG25020.1| splicing factor, arginine/serine-rich 7 [Zea mays]
gi|195616164|gb|ACG29912.1| splicing factor, arginine/serine-rich 7 [Zea mays]
gi|413924261|gb|AFW64193.1| splicing factor, arginine/serine-rich 7 isoform 1 [Zea mays]
gi|413924262|gb|AFW64194.1| splicing factor, arginine/serine-rich 7 isoform 2 [Zea mays]
Length = 163
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T+ +L F FG + V V RK G AFI F DA A R +
Sbjct: 4 VYVGNLDARVTSGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S + NGR S + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWKVELSRST-NGRGS---RDRHGGSESKCYECGETGHFAREC 101
>gi|395394001|ref|NP_001257439.1| predicted gene 10256 [Mus musculus]
gi|395394006|ref|NP_001257440.1| predicted gene 10352 [Mus musculus]
gi|187956457|gb|AAI50671.1| Rbmy1a1 protein [Mus musculus]
Length = 380
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F ++ DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>gi|374373120|ref|ZP_09630780.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373234093|gb|EHP53886.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 88
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YVSNL + ++ DL LFS+FG+++ V+ DR T KSRG F++ + DA A + +
Sbjct: 3 MYVSNLGFHASDDDLRELFSSFGQVSSAKVIMDRTTGKSRGFGFVEMGSVSDATLAMKEL 62
Query: 122 HGKVLNGRTVNASIA 136
GK ++GR + S A
Sbjct: 63 DGKDVDGRRIAVSAA 77
>gi|395394012|ref|NP_001257443.1| predicted gene, 21693 [Mus musculus]
Length = 380
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F ++ DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>gi|77735511|ref|NP_001029450.1| cold-inducible RNA-binding protein [Bos taurus]
gi|74353851|gb|AAI02774.1| Cold inducible RNA binding protein [Bos taurus]
gi|296485364|tpg|DAA27479.1| TPA: cold inducible RNA binding protein [Bos taurus]
Length = 213
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|403178034|ref|XP_003336468.2| hypothetical protein PGTG_18139 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173310|gb|EFP92049.2| hypothetical protein PGTG_18139 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 705
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 48 KSKGSGGLAP-SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFI 106
K++G G P S + +YV +L++ LT+ D+ +F FG I V + +D+ T KS+G AF+
Sbjct: 437 KARGPGPNDPNSYARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYAFV 496
Query: 107 QFVQIPDALSAARAIHGKVLNGRTVNASIAA 137
QF + DA +A ++G L GR + I A
Sbjct: 497 QFKNMHDAKNAMEKMNGFQLAGRALRVEIKA 527
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLF-STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+V+VS L + + +L F GK+ ++ DR +R+S+GV +++F ++ +++ A
Sbjct: 325 SVFVSQLSARVGDRELFQFFEQQAGKVRDARLITDRISRRSKGVGYVEFREL-ESVQKAL 383
Query: 120 AIHGKVLNGRTV 131
A+ G L G V
Sbjct: 384 ALTGTKLLGLPV 395
>gi|432877561|ref|XP_004073160.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Oryzias latipes]
Length = 380
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPADAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKPIKVEQA 84
>gi|432877559|ref|XP_004073159.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Oryzias latipes]
Length = 386
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPADAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKPIKVEQA 84
>gi|73987338|ref|XP_868602.1| PREDICTED: cold-inducible RNA-binding protein isoform 4 [Canis
lupus familiaris]
Length = 219
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 26 GNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGK 85
G +P P + S S H K+ +A + ++V L + L +FS +G+
Sbjct: 27 GASPGGPVTPES----SQAHHGKAT----MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQ 78
Query: 86 IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV---NASIAADN 139
I+ V V+KDR T++SRG F+ F I DA A A++GK ++GR + A ++DN
Sbjct: 79 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 135
>gi|2564280|emb|CAA75403.1| RNA-binding protein [Mus musculus]
Length = 380
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F ++ DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>gi|6680946|ref|NP_031731.1| cold-inducible RNA-binding protein [Mus musculus]
gi|346644681|ref|NP_001231002.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|46395643|sp|P60826.1|CIRBP_CRIGR RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397383|sp|P60825.1|CIRBP_RAT RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397384|sp|P60824.1|CIRBP_MOUSE RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|1060919|dbj|BAA11213.1| CIRP [Mus musculus]
gi|1783168|dbj|BAA19092.1| CIRP [Rattus norvegicus]
gi|12852647|dbj|BAB29491.1| unnamed protein product [Mus musculus]
gi|34099624|gb|AAQ57122.1| cold-inducible RNA binding protein [Cricetulus griseus]
gi|49522692|gb|AAH75699.1| Cold inducible RNA binding protein [Mus musculus]
gi|74209036|dbj|BAE21245.1| unnamed protein product [Mus musculus]
gi|115345819|gb|ABI95367.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|148699640|gb|EDL31587.1| cold inducible RNA binding protein, isoform CRA_c [Mus musculus]
gi|149034580|gb|EDL89317.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
gi|149034581|gb|EDL89318.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
Length = 172
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|47271546|ref|NP_112409.2| cold-inducible RNA-binding protein [Rattus norvegicus]
gi|46623308|gb|AAH69219.1| Cold inducible RNA binding protein [Rattus norvegicus]
Length = 172
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|126309365|ref|XP_001367778.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Monodelphis
domestica]
Length = 235
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL+ +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLETGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
+ + GKV+ G V ++ R S + + + + RCYECG++GH +Y+C
Sbjct: 65 QGLDGKVICGSRVRVELSTGLPRRSRYDRPPARCPFDPNDRCYECGEKGHYAYDC 119
>gi|355702927|gb|EHH29418.1| hypothetical protein EGK_09841 [Macaca mulatta]
Length = 202
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|307206112|gb|EFN84192.1| Splicing factor, arginine/serine-rich 7 [Harpegnathos saltator]
Length = 127
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S VYV +L + +L FS +G + V V R G AF++F DA A
Sbjct: 6 SDGKVYVGDLGSNASKQELEDAFSYYGSLRNVWV-----ARHPPGFAFVEFEDPRDAEDA 60
Query: 118 ARAIHGKVLNGRTVNASIAADNG---RASSFIKK---RVYKDKSRCYECGDEGHLSYECP 171
R + G+ + GR A + NG R +++ R Y + RCYECG+ GH + +CP
Sbjct: 61 VRGLDGRTICGR--RARVELSNGKRLRDRGSMRRGAVRSYHPEDRCYECGERGHYARDCP 118
Query: 172 RNQLGPRER 180
R++ R+R
Sbjct: 119 RHRNSRRKR 127
>gi|328859425|gb|EGG08534.1| hypothetical protein MELLADRAFT_84729 [Melampsora larici-populina
98AG31]
Length = 649
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 48 KSKGSGGLAP-SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFI 106
K +G G P S + +YV +L++ LT+ DL +F FG I V + +D+ T KS+G AF+
Sbjct: 420 KPRGPGPNDPNSYARLYVGSLNFNLTDDDLRQVFQPFGDIEYVDLHRDQITGKSKGYAFV 479
Query: 107 QFVQIPDALSAARAIHGKVLNGRTVNASIAA 137
QF + DA +A ++G L GR + I A
Sbjct: 480 QFKNMHDAKNAMEKMNGFQLAGRALRVEIKA 510
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLF-STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+V+VS L + + +L F GK+ V+ DR +R+S+GV +++F ++ D++ A
Sbjct: 307 SVFVSQLSARVGDRELSQFFEQQAGKVRDARVITDRISRRSKGVGYVEFREL-DSVQKAL 365
Query: 120 AIHGKVLNGRTV 131
A+ G L G V
Sbjct: 366 ALTGTKLLGLPV 377
>gi|145345423|ref|XP_001417211.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577438|gb|ABO95504.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 874
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y T ++ LF FGK+ V +L DR+T++S+G+A++ FV D + A A+
Sbjct: 336 IFVRNLPYTATEEEVAELFEQFGKLTAVHILVDRSTKRSKGLAYVTFVIPEDGVKAMEAV 395
Query: 122 HGKVLNGRTVN 132
G + GR ++
Sbjct: 396 DGSIFQGRLIH 406
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 39 DVTSSGPHKKSKGSGGLAP---SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDR 95
+++S G ++ G P S + + V N+ + T D+ LF+ FG++ +V + K +
Sbjct: 745 ELSSQGGGERDDDKAGKVPKGFSATKIVVRNVAFEATKRDIQKLFNPFGQLKQVRLPK-K 803
Query: 96 ATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
RG AF++F + +A A+ G L GR +
Sbjct: 804 FDGAHRGFAFVEFNTRRETQAAMDALRGTHLYGRHI 839
>gi|355755275|gb|EHH59022.1| hypothetical protein EGM_09015 [Macaca fascicularis]
Length = 202
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|297804134|ref|XP_002869951.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
gi|297315787|gb|EFH46210.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%)
Query: 22 YASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFS 81
+++T + P+ +SSS+ + KSK S P S + V NL ++ + L FS
Sbjct: 2 WSATLSFPSFVASSSALPNYRNRRFPKSKASLFNYPLASKIMVRNLPFSTSEDFLKREFS 61
Query: 82 TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGR 141
FG+IA V +++D + ++S+G AFIQF DA A + ++ NGR + IA R
Sbjct: 62 AFGEIAEVKLIRDESMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGKR 121
>gi|221220302|gb|ACM08812.1| Splicing factor, arginine/serine-rich 7 [Salmo salar]
Length = 256
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF+++ DA A + +
Sbjct: 17 VYVGDLGNGAAKGELERAFSYYGPLRSVWV-----ARNPPGFAFVEYEDPRDAEDATKGM 71
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYECPR 172
GKVL G + ++ R S + + +R + RCY+CG+ GH +Y+C R
Sbjct: 72 DGKVLCGSRIRVELSTGMSRKSRYGRPSRRHFDPNDRCYQCGESGHYAYDCSR 124
>gi|417397313|gb|JAA45690.1| Putative rasgap sh3 binding protein rasputin [Desmodus rotundus]
Length = 218
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|395533733|ref|XP_003768907.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Sarcophilus
harrisii]
Length = 235
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL+ +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLETGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
+ + GKV+ G V ++ R S + + + + RCYECG++GH +Y+C
Sbjct: 65 QGLDGKVICGSRVRVELSTGLPRRSRYDRPPARCPFDPNDRCYECGEKGHYAYDC 119
>gi|168026155|ref|XP_001765598.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683236|gb|EDQ69648.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 239
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 50 KGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV 109
+G G + + +Y+SNLDY ++N D+ LFS G + R ++ DR+ R S+G A + F+
Sbjct: 80 RGMGKGIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRCSINYDRSGR-SKGTAEVVFI 138
Query: 110 QIPDALSAARAIHGKVLNGRTVNASIAADNGRASSF 145
+ PDALSA + + L+G+ + I N R + F
Sbjct: 139 RKPDALSAMKRYNNVQLDGKPMKIEIIGTNLRPARF 174
>gi|403175151|ref|XP_003889057.1| hypothetical protein PGTG_22242 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171476|gb|EHS64385.1| hypothetical protein PGTG_22242 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 705
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 48 KSKGSGGLAP-SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFI 106
K++G G P S + +YV +L++ LT+ D+ +F FG I V + +D+ T KS+G AF+
Sbjct: 437 KARGPGPNDPNSYARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYAFV 496
Query: 107 QFVQIPDALSAARAIHGKVLNGRTVNASIAA 137
QF + DA +A ++G L GR + I A
Sbjct: 497 QFKNMHDAKNAMEKMNGFQLAGRALRVEIKA 527
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLF-STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+V+VS L + + +L F GK+ ++ DR +R+S+GV +++F ++ +++ A
Sbjct: 325 SVFVSQLSARVGDRELFQFFEQQAGKVRDARLITDRISRRSKGVGYVEFREL-ESVQKAL 383
Query: 120 AIHGKVLNGRTV 131
A+ G L G V
Sbjct: 384 ALTGTKLLGLPV 395
>gi|308802782|ref|XP_003078704.1| RNA recognition motif (ISS) [Ostreococcus tauri]
gi|116057157|emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri]
Length = 907
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 37 SADVTSSGPHKKSKGSGGLAPSKST--VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD 94
S DV P K + + T ++V NL Y T ++ LF FGK++ V +L D
Sbjct: 337 SEDVKEVEPKTKDVNAADMEALSETGRIFVRNLPYTATEEEVAELFEQFGKLSAVHILVD 396
Query: 95 RATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132
R+T++S+G+A++ F D + A A+ G + GR ++
Sbjct: 397 RSTKRSKGLAYVTFAIPEDGVKAMEAVDGSIFQGRLIH 434
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S + + + N+ + T D+ LF+ FG++ +V + K + RG AF++F + +A
Sbjct: 798 SATKLVIRNVAFEATKRDIQKLFNPFGQLKQVRLPK-KFDGAHRGFAFVEFNTARETQAA 856
Query: 118 ARAIHGKVLNGRTV 131
A+ G L GR V
Sbjct: 857 MDALKGTHLYGRHV 870
>gi|357150077|ref|XP_003575333.1| PREDICTED: uncharacterized protein LOC100846226 [Brachypodium
distachyon]
Length = 231
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD T ++ F FG + V V RK G AFI F + DA A R +
Sbjct: 4 VYVGNLDPRATAREIEDEFRVFGILRSVWV-----ARKPPGFAFIDFDESRDAKDAIREL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S + +GR ++R +CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELSTKSGSGRGRE--RERPGGSDMKCYECGESGHFAREC 103
>gi|108744011|gb|ABG02278.1| heterogeneous nuclear ribonucleoprotein G [Haplochromis burtoni]
Length = 391
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKPIKVEQA 84
>gi|410343221|gb|JAA40557.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 203
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 32 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 91
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 92 KDAMMAMNGKSVDGRQIRVDQAG 114
>gi|45387765|ref|NP_991236.1| splicing factor, arginine/serine-rich 7 [Danio rerio]
gi|41350982|gb|AAH65586.1| Zgc:77155 [Danio rerio]
Length = 258
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF+++ DA A + +
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRSVWV-----ARNPPGFAFVEYEDARDAEDAVKGM 70
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYEC 170
GKVL G V ++ R S + + +R + RCY+CG+ GH +Y+C
Sbjct: 71 DGKVLCGARVRVELSNGMSRKSRYGRPSRRQFDPNDRCYQCGETGHYAYDC 121
>gi|348515473|ref|XP_003445264.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Oreochromis niloticus]
Length = 391
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKPIKVEQA 84
>gi|159163576|pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 67
Query: 115 LSAARAIHGKVLNGRTV 131
A A++GK ++GR +
Sbjct: 68 KDAMMAMNGKSVDGRQI 84
>gi|307180295|gb|EFN68328.1| Splicing factor, arginine/serine-rich 7 [Camponotus floridanus]
Length = 156
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PS VYV +L + + +L FS +G + V V R G AF++F DA
Sbjct: 8 PSDGKVYVGDLGSSASKQELEDAFSYYGSLQNVWV-----ARNPPGFAFVEFEDPRDAED 62
Query: 117 AARAIHGKVLNGRTVNASIAADNGRA----SSFIKK--RVYKDKSRCYECGDEGHLSYEC 170
A R + G+ L GR V ++ NG+ SF + R + + +CYECG+ GH + +C
Sbjct: 63 AVRGLDGRTLCGRRVRVELS--NGKKLRDRGSFRRGSGRPFHPEDKCYECGERGHYARDC 120
>gi|90076360|dbj|BAE87860.1| unnamed protein product [Macaca fascicularis]
Length = 207
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|449433509|ref|XP_004134540.1| PREDICTED: multiple RNA-binding domain-containing protein 1-like
isoform 1 [Cucumis sativus]
gi|449490646|ref|XP_004158665.1| PREDICTED: multiple RNA-binding domain-containing protein 1-like
isoform 1 [Cucumis sativus]
Length = 158
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P S + V NL Y+ S L FS FG+IA V + KDR+T++ +G AFIQ+ DA+
Sbjct: 42 PLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAML 101
Query: 117 AARAIHGKVLNGRTVNASIA 136
A + K+ +GR + IA
Sbjct: 102 ALETMDCKIFDGRMIYVEIA 121
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d [Homo sapiens]
Length = 311
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 13 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 72
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 73 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 100
>gi|395854422|ref|XP_003799690.1| PREDICTED: putative RNA-binding protein 3 [Otolemur garnettii]
Length = 155
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FSTFG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSTFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDRAGKSARGT 89
>gi|345313668|ref|XP_001512332.2| PREDICTED: cold-inducible RNA-binding protein-like [Ornithorhynchus
anatinus]
Length = 270
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV 131
A A++GK ++GR +
Sbjct: 61 KDAMMAMNGKSVDGRQI 77
>gi|115447241|ref|NP_001047400.1| Os02g0610600 [Oryza sativa Japonica Group]
gi|75324099|sp|Q6K9C3.1|RZP23_ORYSJ RecName: Full=Serine/arginine-rich splicing factor RSZ23; AltName:
Full=RS-containing zinc finger protein 23;
Short=Os-RSZ23; Short=Os-RSZp23
gi|47497180|dbj|BAD19227.1| putative splicing factor RSZp22 (RSZP22) [Oryza sativa Japonica
Group]
gi|113536931|dbj|BAF09314.1| Os02g0610600 [Oryza sativa Japonica Group]
gi|215704568|dbj|BAG94201.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737778|dbj|BAG96908.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765616|dbj|BAG87313.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 200
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T ++ F FG + V V RK G AFI F DA A R +
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S A +GR + R +CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELSTKAGSGRG----RDRSGGSDMKCYECGEPGHFAREC 101
>gi|209155708|gb|ACI34086.1| Splicing factor, arginine/serine-rich 7 [Salmo salar]
Length = 129
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VYV NL +L F +G + V + R G AF++F DA A R
Sbjct: 11 AKVYVGNLGTGAGKGELERAFGYYGPLRTVWI-----ARNPPGFAFVEFEDTRDAEDAVR 65
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
+ GK+++G V ++ R S + + R + +CYECG+ GH +Y+C
Sbjct: 66 GLDGKLISGSRVRVELSTGMPRRSRYERAPTNRPFDSNDKCYECGERGHYAYDC 119
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++TNS+L LF G +A V ++ DR T +SRG AF+ + DA A R
Sbjct: 110 LYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMF 169
Query: 122 HGKVLNGRTV 131
G + GRTV
Sbjct: 170 DGSQVGGRTV 179
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G S +Y NL + LT+ L F+ + V+ +R + +SRG F+ F
Sbjct: 205 GFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAES 264
Query: 114 ALSAARAIHGKVLNGRTVNASIA-ADNGRASSFIKKRV 150
A +A ++G + GR + ++A A + I+K V
Sbjct: 265 ARAALDIMNGVEVQGRPLRLNLAEARTPSSPPVIQKNV 302
>gi|348523061|ref|XP_003449042.1| PREDICTED: hypothetical protein LOC100708809 [Oreochromis
niloticus]
Length = 240
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF++F DA A + +
Sbjct: 18 VYVGDLGNGAAKGELERAFSYYGPLRSVWV-----ARNPPGFAFVEFEDPRDAEDAVKGM 72
Query: 122 HGKVLNGRTVNASIAAD-----NGRASSFIKKRVYKDKSRCYECGDEGHLSYECPR 172
GKVL G V ++ GR S +R + RCY+CGD GH +Y+C R
Sbjct: 73 DGKVLCGSRVRVEMSTGLSRKGRGRPS----RRQFDPNDRCYQCGDRGHYAYDCYR 124
>gi|299530322|ref|ZP_07043747.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
gi|298721693|gb|EFI62625.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
Length = 113
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++T+S+L + F+ FG + V+ DR T +S+G AF++ + +A A+
Sbjct: 5 IYVGNLPYSVTDSNLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISAL 64
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSR 156
HG ++GR++ ++A F R ++ SR
Sbjct: 65 HGMSVDGRSIVVNLAKPREEGRGFGGNREFRASSR 99
>gi|222623220|gb|EEE57352.1| hypothetical protein OsJ_07486 [Oryza sativa Japonica Group]
Length = 203
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T ++ F FG + V V RK G AFI F DA A R +
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S A +GR + R +CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELSTKAGSGRG----RDRSGGSDMKCYECGEPGHFAREC 101
>gi|71834670|ref|NP_001025438.1| serine/arginine-rich splicing factor 7 [Danio rerio]
gi|66911407|gb|AAH97250.1| Splicing factor, arginine/serine-rich 7 [Danio rerio]
Length = 178
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L F +G + V + ++ A G AF++F DA +
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPA-----GFAFVEFEDPRDAEDSV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSF---IKKRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRYDHPPSRRPFDPNDRCYECGEKGHYAYDC 119
>gi|343958808|dbj|BAK63259.1| cold-inducible RNA-binding protein [Pan troglodytes]
Length = 225
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGSGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|153874940|ref|ZP_02002958.1| RNA-binding protein [Beggiatoa sp. PS]
gi|152068596|gb|EDN67042.1| RNA-binding protein [Beggiatoa sp. PS]
Length = 89
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 51/79 (64%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++T +L +F+ +G+I+ V ++ D+ T +S+G AF++ V+ DA +A + +
Sbjct: 3 IYVGNLSYSMTEEELKEIFTEYGEISTVNLITDKYTGQSKGFAFVEMVKQADAETAIKEL 62
Query: 122 HGKVLNGRTVNASIAADNG 140
+GK + G ++ + A G
Sbjct: 63 NGKTIKGMSIKVNQARPRG 81
>gi|426257071|ref|XP_004022158.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Ovis aries]
gi|426257073|ref|XP_004022159.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Ovis aries]
gi|426257075|ref|XP_004022160.1| PREDICTED: putative RNA-binding protein 3 isoform 3 [Ovis aries]
gi|426257077|ref|XP_004022161.1| PREDICTED: putative RNA-binding protein 3 isoform 4 [Ovis aries]
gi|426257079|ref|XP_004022162.1| PREDICTED: putative RNA-binding protein 3 isoform 5 [Ovis aries]
Length = 160
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
+A RA++G+ L+GR + A + R S
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHAGKSARGS 89
>gi|350538645|ref|NP_001233728.1| RNA-binding motif 3 [Cricetulus griseus]
gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus]
Length = 156
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R S
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGS 89
>gi|348553582|ref|XP_003462605.1| PREDICTED: putative RNA-binding protein 3-like [Cavia porcellus]
Length = 159
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L+++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFSTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|62857699|ref|NP_001017228.1| cold-inducible RNA-binding protein [Xenopus (Silurana) tropicalis]
gi|123910273|sp|Q28IQ9.1|CIRBP_XENTR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|89268649|emb|CAJ83306.1| cold inducible RNA binding protein [Xenopus (Silurana) tropicalis]
Length = 166
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ T L +FS +G++A V V+KDR +++SRG F+ F DA
Sbjct: 1 MSCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|330847369|gb|AEC46650.1| cold inducible RNA binding protein transcript variant 2 [Sus
scrofa]
Length = 182
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SR F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|37595358|gb|AAQ94565.1| RNA binding motif protein [Danio rerio]
Length = 277
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ + L FS FG+I+ V ++KDR T KSRG AF+ + DA AAR +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPSDAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKPLDGKPIKVEQA 84
>gi|47086837|ref|NP_997763.1| RNA-binding motif protein, X chromosome [Danio rerio]
gi|82241461|sp|Q7ZWA3.1|RBMX_DANRE RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G
gi|29436819|gb|AAH49509.1| RNA binding motif protein, X-linked [Danio rerio]
gi|47846286|emb|CAG30733.1| RNA binding motif protein [Danio rerio]
gi|48735158|gb|AAH71326.1| RNA binding motif protein, X-linked [Danio rerio]
Length = 379
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ + L FS FG+I+ V ++KDR T KSRG AF+ + DA AAR +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKPLDGKPIKVEQA 84
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST ++V N+ + TN +L F +G + ++KD AF+ ++ DA+
Sbjct: 74 PKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAM 125
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
A + G+ ++ ++ R + + +R + CY CG EGH S ECP +Q
Sbjct: 126 EAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGER-----TGCYRCGQEGHWSKECPLDQN 180
Query: 176 GP-RERPMPKKLRRRSDGEDESEFDDGG 202
G RE P S+G FD GG
Sbjct: 181 GSYREGP-------SSEGFGPVRFDSGG 201
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL T ++ +LFS +GKI+ ++K+ F+ +A A + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--------FGFVHMDSKSEADEAIQNL 55
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRC 157
H +LNG +N ++ G+ + K V S C
Sbjct: 56 HHYMLNGMAMNVEMS--KGKPKTSTKLHVGNISSSC 89
>gi|119589928|gb|EAW69522.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
gi|119589930|gb|EAW69524.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
Length = 297
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|1843458|gb|AAB81555.1| Rbm [Mus musculus]
Length = 380
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F + DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NL + L +S L +FS GK+ V+ DR T +SRG F+ + A A+
Sbjct: 208 VYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAAL 267
Query: 122 HGKVLNGRTVNASIAADNGRASSF 145
G++L GRT+ S+A D R SF
Sbjct: 268 DGQILEGRTIKVSVAEDRPRRGSF 291
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y + + L LF G + V+ +R T +SRG F+ + +A + A
Sbjct: 111 LFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAKF 170
Query: 122 HGKVLNGRTVNASIAADNG 140
+ NGR + + AA G
Sbjct: 171 NRYDYNGRPLTVNKAAPRG 189
>gi|209153932|gb|ACI33198.1| Splicing factor, arginine/serine-rich 7 [Salmo salar]
Length = 223
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF+++ DA A + +
Sbjct: 18 VYVGDLGNGAAKGELERAFSYYGPLRTVWV-----ARNPPGFAFVEYEDARDAEDAVKGM 72
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYECPR 172
GKVL G + ++ R + + +R + + RCY+CGD GH +Y+C R
Sbjct: 73 DGKVLCGSRIRVELSTGMSRKTKHGRPSRRHFDPQDRCYQCGDRGHYAYDCYR 125
>gi|356526819|ref|XP_003532014.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Glycine
max]
Length = 176
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD ++ DL F +G + V V R+ G AFI+F DAL A +
Sbjct: 2 SRVYVGNLDPRVSERDLEDEFRIYGVLRSVWV-----ARRPPGYAFIEFDDRRDALDAIQ 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
A+ GK NG V S N + + + ++CYECG+ GH + EC R ++G R
Sbjct: 57 ALDGK--NGWRVELS---HNSKGGGRGGRGRGGEDTKCYECGEPGHFAREC-RLRIGSR 109
>gi|285808363|gb|ADC35892.1| RNP-1 like RNA-binding protein [uncultured bacterium 246]
Length = 104
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V+V N+ + T +L F T+G+IAR+ ++ DR T ++RG AF++ DA A +
Sbjct: 4 VFVGNMSFQTTEGELRAAFETYGEIARIQIMTDRDTGQARGFAFVEMTNDEDAAKAIAGL 63
Query: 122 HGKVLNGRTVNASIA 136
+G L+GR +N + A
Sbjct: 64 NGTQLDGRALNVNEA 78
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST V+V NL T DL LF TFGK+ K +G AF+ DAL
Sbjct: 79 PLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECD--------KVKGYAFVHMENKEDAL 130
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A+HG GR ++ ++ K+ K C CG +GH + ECP
Sbjct: 131 QAIEALHGTSFKGRPLSVELSKVQP------SKQTPTGKIPCVSCGKQGHYAGECP 180
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST V+V NL T DL LF TFGK+ K +G AF+ DAL
Sbjct: 79 PLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECD--------KVKGYAFVHMENKEDAL 130
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A+HG GR ++ ++ K+ K C CG +GH + ECP
Sbjct: 131 QAIEALHGTSFKGRPLSVELSKVQP------SKQTPTGKIPCVSCGKQGHYAGECP 180
>gi|395394008|ref|NP_001257441.1| RNA-binding motif protein, Y chromosome, family 1 member B [Mus
musculus]
gi|341942161|sp|Q60990.3|RBY1B_MOUSE RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member B; AltName: Full=RNA-binding motif protein 1
Length = 380
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F + DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>gi|325182043|emb|CCA16496.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 193
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +YV+NL + +T ++L+ LF+ FG++ + V+ D +R+SRG AF+ F + DA A +
Sbjct: 29 NNLYVANLAHRVTETELNDLFAKFGRLEKCEVITDPISRESRGFAFVTFEDVRDANDAVQ 88
Query: 120 AIHGKVLNGRTVNASIA 136
++GK + GR + A
Sbjct: 89 ELNGKDIQGRRIRVEHA 105
>gi|406676693|ref|ZP_11083878.1| hypothetical protein HMPREF1170_02086 [Aeromonas veronii AMC35]
gi|423201900|ref|ZP_17188479.1| hypothetical protein HMPREF1167_02062 [Aeromonas veronii AER39]
gi|423207067|ref|ZP_17193623.1| hypothetical protein HMPREF1168_03258 [Aeromonas veronii AMC34]
gi|423209269|ref|ZP_17195823.1| hypothetical protein HMPREF1169_01341 [Aeromonas veronii AER397]
gi|404615847|gb|EKB12806.1| hypothetical protein HMPREF1167_02062 [Aeromonas veronii AER39]
gi|404617127|gb|EKB14063.1| hypothetical protein HMPREF1169_01341 [Aeromonas veronii AER397]
gi|404621360|gb|EKB18249.1| hypothetical protein HMPREF1168_03258 [Aeromonas veronii AMC34]
gi|404625007|gb|EKB21824.1| hypothetical protein HMPREF1170_02086 [Aeromonas veronii AMC35]
Length = 93
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y +T +L TLFS FG++ +V ++ DR T +S+G FI+ DA A +
Sbjct: 3 IYVGNLSYRMTADELKTLFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGL 62
Query: 122 HGKVLNGRTVNASIA 136
HG + GRT+ + A
Sbjct: 63 HGTEVGGRTITVNQA 77
>gi|4098580|gb|AAD00327.1| RBM1 [Macropus eugenii]
Length = 402
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T+++ L+ DL ++F +G I +V ++KD+ T KSRG AF+ F A AAR
Sbjct: 8 TLFIGGLNVGTNEKDLESVFGKYGHIVKVLLMKDQETNKSRGFAFVTFESPAAAKDAARD 67
Query: 121 IHGKVLNGRTVNASIA 136
++GK L+G+++ A
Sbjct: 68 MNGKALDGKSIKVEQA 83
>gi|328724546|ref|XP_003248181.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 3
[Acyrthosiphon pisum]
gi|328724548|ref|XP_003248182.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 4
[Acyrthosiphon pisum]
Length = 137
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV +L + + DL FS +G I V V R G AF++F DA A R +
Sbjct: 17 IYVGDLGSSASKQDLEDAFSYYGSIRNVWV-----ARNPPGFAFVEFEDPRDAEDAVRGL 71
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEGHLSYECPRNQLG 176
G+ + GR V ++ R ++ + + +CYECGD GH + +C R + G
Sbjct: 72 DGRSICGRRVRVELSNAGSRKGAYRGGPPRRGRPFHPEDKCYECGDRGHYARDCRRFKGG 131
Query: 177 PR 178
R
Sbjct: 132 RR 133
>gi|118381422|ref|XP_001023873.1| hypothetical protein TTHERM_00248430 [Tetrahymena thermophila]
gi|89305639|gb|EAS03627.1| hypothetical protein TTHERM_00248430 [Tetrahymena thermophila
SB210]
Length = 284
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P T+YV +L Y L L T F +G I + V + R T +S+G AFIQF Q A
Sbjct: 122 PQNCTIYVGHLPYGLLEEQLKTYFEQYGTIVNIKVARSRKTARSKGFAFIQFEQPEVAAI 181
Query: 117 AARAIHGKVLNGRTVNASIAADNGR 141
AA+A++G ++ G+ + + + +
Sbjct: 182 AAKAMNGHMVLGKVLEVHVLQQDQK 206
>gi|413932769|gb|AFW67320.1| hypothetical protein ZEAMMB73_365171 [Zea mays]
Length = 376
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S STV+VSNL Y +SDL +FS G + R ++ ++ + KSRG F+QF + DA A
Sbjct: 25 SPSTVFVSNLPYTFKSSDLEAVFSEVGPVRRCFMVAEKGSEKSRGFGFVQFATVQDADRA 84
Query: 118 ARAIHGKVLNGRTVNASIAAD 138
+ +G + GR + +A +
Sbjct: 85 LQQKNGSPVAGRKIRVKLAMN 105
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL + +T ++ +FS+ G + VT+ S+G AF+ F + DA +A + I+G
Sbjct: 280 VRNLPFKITEKEIVDMFSSAGFVWDVTIPHKSDEGISKGFAFVSFTRKQDAENAIKNING 339
Query: 124 KVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
K + R V A + K+VY ++ + D G+ C
Sbjct: 340 KDVAKRPVAVDWA---------VPKKVYTVAAKV-DAKDNGNRVIFC 376
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++TNS L LF G +A V ++ DR T +SRG AF+ + DA A R
Sbjct: 107 LYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMF 166
Query: 122 HGKVLNGRTVNASI 135
G + GRTV +
Sbjct: 167 DGSQVGGRTVKVNF 180
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G S +Y NL + LT+ L F+ + V+ +R + +SRG F+ F
Sbjct: 202 GFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAES 261
Query: 114 ALSAARAIHGKVLNGRTVNASIA 136
A +A ++G + GR + ++A
Sbjct: 262 AQAALDIMNGVEVQGRPLRLNLA 284
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 28 APANPSSSSSADVTSSGPHKKSKGSGGLAPSKS-----TVYVSNLDYALTNSDLHTLFST 82
APAN +++ +A T + P + SG AP+ S ++YV LD ++T + L+ LFS+
Sbjct: 21 APANGTAAGAAPSTEAAPETAGEPSGTAAPATSQPHSASLYVGELDPSVTEAMLYELFSS 80
Query: 83 FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129
G++A + V +D TR+S G A++ + D A ++ ++ GR
Sbjct: 81 IGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGR 127
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ V++ NLD A+ N LH F+ FG I V +D S+G F+ + A +A
Sbjct: 145 QGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAI 203
Query: 119 RAIHGKVLNGRTV 131
+ ++G +LN + V
Sbjct: 204 KHVNGMLLNEKKV 216
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +YV N++ +T+ + LF +G+I T+ +D T KSRG F+ F A +A
Sbjct: 239 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 120 AIHGKVLNGRTV 131
A++ L G+ +
Sbjct: 299 ALNEYELKGQKL 310
>gi|225706912|gb|ACO09302.1| Splicing factor, arginine/serine-rich 7 [Osmerus mordax]
Length = 208
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF+++ DA A + +
Sbjct: 17 VYVGDLGNGAAKGELERAFSYYGPLRSVWV-----ARNPPGFAFVEYEDTRDAEDAVKGM 71
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYECPR 172
GKVL G + ++ R S + + +R + RCY+CG+ GH +Y+C R
Sbjct: 72 DGKVLCGARIRVELSTGMSRKSRYGRPSRRNFDPNDRCYQCGESGHYAYDCYR 124
>gi|322787527|gb|EFZ13615.1| hypothetical protein SINV_15244 [Solenopsis invicta]
Length = 128
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PS VYV +L + + L FS +G + V V R G AF++F DA
Sbjct: 7 PSDGKVYVGDLGSSASKQQLEDAFSYYGPLHNVWV-----ARNPPGFAFVEFEDPRDAED 61
Query: 117 AARAIHGKVLNGRTVNASIAADNG---RASSFIKK---RVYKDKSRCYECGDEGHLSYEC 170
A R + G+++ GR + ++ NG R F ++ R + + +CYECG+ GH + +C
Sbjct: 62 AVRGLDGRIVCGRRIRVELS--NGKKLRDRGFPRRGVGRPFHPEDKCYECGERGHYARDC 119
>gi|357115606|ref|XP_003559579.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 160
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++V L + T + F FGKI V V+ +R T +SRG F+ F A+ A
Sbjct: 6 ESQIFVGGLSWCTTERTVEGAFRRFGKIVHVQVITERHTGRSRGFGFVIFSDPRAAIDAI 65
Query: 119 RAIHGKVLNGRTVNASIA------ADNGRASSFIKKRVYK-DKSRCYECGDEGHLSYECP 171
+H + L+G T+ A AD GR R C+ CG GH + +CP
Sbjct: 66 MWMHNQELDGHTITVFWANPKVDNADGGRDGYCGSGRAAGFGGGCCFACGRPGHWAPDCP 125
>gi|417396785|gb|JAA45426.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 190
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|389747069|gb|EIM88248.1| hypothetical protein STEHIDRAFT_155598 [Stereum hirsutum FP-91666
SS1]
Length = 457
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++YV N+DYA T D+ F G I RVT+L D+ T +G A+++F + P+ + AA A
Sbjct: 84 SIYVGNVDYAATPEDIQAHFQAAGTINRVTILCDKFTGHPKGYAYVEFAE-PEHVDAALA 142
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG 161
+ + +GR + S ++G + ++ +D +R G
Sbjct: 143 LDNSLFHGRLIKGSTGGEDGEVIAVGREVATEDTARTEALG 183
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta africana]
Length = 154
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|4104336|gb|AAD01997.1| heterogeneous nuclear ribonucleoprotein G [Macropus eugenii]
Length = 394
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L +F +G+I V ++KDR T KSRG AFI F DA AAR +
Sbjct: 10 LFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK+L+G+++ A
Sbjct: 70 NGKLLDGKSIKVEQA 84
>gi|259155082|ref|NP_001158783.1| Heterogeneous nuclear ribonucleoprotein G [Salmo salar]
gi|223647384|gb|ACN10450.1| Heterogeneous nuclear ribonucleoprotein G [Salmo salar]
Length = 290
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ LD L FS +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLDTETNEKALEKHFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKPIKVEQA 84
>gi|395546030|ref|XP_003774897.1| PREDICTED: RNA-binding motif protein, X chromosome [Sarcophilus
harrisii]
Length = 413
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L +F +G+I V ++KDR T KSRG AFI F DA AAR +
Sbjct: 29 LFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAKDAARDM 88
Query: 122 HGKVLNGRTVNASIA 136
+GK+L+G+++ A
Sbjct: 89 NGKLLDGKSIKVEQA 103
>gi|229367606|gb|ACQ58783.1| Heterogeneous nuclear ribonucleoprotein G [Anoplopoma fimbria]
Length = 289
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ T L FS +G I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGGIVEVILMKDRETNKSRGFAFVTFESPADAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKPIKVEQA 84
>gi|194385818|dbj|BAG65284.1| unnamed protein product [Homo sapiens]
Length = 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV 131
A A++GK ++GR +
Sbjct: 61 KDAMMAMNGKSVDGRQI 77
>gi|343432668|ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa]
Length = 156
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
+A RA++G+ L+GR + A + R +
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|410255528|gb|JAA15731.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MASEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|442749963|gb|JAA67141.1| Putative rna-binding protein rrm superfamily [Ixodes ricinus]
Length = 863
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y +T D+ LF FG I+ V + D+ TRK +G AF+ F+ A+ A +
Sbjct: 326 IFVRNLSYTVTEDDIEALFKKFGPISEVHLSIDKITRKPKGFAFVSFMFPEHAIKAFSEL 385
Query: 122 HGKVLNGRTVNASIA-ADNGRASSFIKKRVYKDK 154
GK+L GR ++ A A N K +KDK
Sbjct: 386 DGKLLQGRLLHLIPAKAKNSEEEDAQKPMSFKDK 419
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA-TRKSRGVAFIQFVQIPD 113
L + + V N+ + T +L LFS FG + + + K A T + RG AF+ F+ D
Sbjct: 732 LGKESTKILVRNIPFEATKKELQELFSVFGTLRDIRLPKKMAGTGRHRGFAFVDFLTKND 791
Query: 114 ALSAARAI-HGKVLNGRTVNASIAADNGRASSFIKKRV 150
A A +A+ L GR + A+ + + ++K+
Sbjct: 792 AKRAFQALCQSTHLYGRRLVLEWASSDDQEVDTLRKKT 829
>gi|330847367|gb|AEC46649.1| cold inducible RNA binding protein transcript variant 1 [Sus
scrofa]
Length = 172
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SR F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|301764797|ref|XP_002917810.1| PREDICTED: putative RNA-binding protein 3-like isoform 1
[Ailuropoda melanoleuca]
Length = 156
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST V+V NL T DL LF TFGK+ K +G AF+ DAL
Sbjct: 79 PLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECD--------KVKGYAFVHMENKEDAL 130
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A+HG GR ++ ++ K+ K C CG +GH + ECP
Sbjct: 131 QAIEALHGTSFKGRPLSVELSKVQP------SKQAPTGKIPCVNCGKQGHYAGECP 180
>gi|221132804|ref|XP_002167622.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Hydra
magnipapillata]
Length = 161
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ LDY DL LF +G + +V+++KDR T++ RG AF++F DA +A
Sbjct: 7 LYIGQLDYNADERDLEDLFGKYGTVVKVSIIKDRETQRPRGFAFVEFDSEEDAEAAIDGC 66
Query: 122 HGKVLNGRTVNASIA 136
+G+ +NGR + + A
Sbjct: 67 NGQDVNGRQITVARA 81
>gi|291407441|ref|XP_002719942.1| PREDICTED: RNA binding motif protein 3 [Oryctolagus cuniculus]
Length = 155
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + +++ L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFIGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|65301143|ref|NP_083936.1| RNA-binding motif protein, X-linked-like-2 [Mus musculus]
gi|12838734|dbj|BAB24311.1| unnamed protein product [Mus musculus]
Length = 385
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST V+V NL T DL LF TFGK+ K +G AF+ DAL
Sbjct: 79 PLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECD--------KVKGYAFVHMENKEDAL 130
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A+HG GR ++ ++ K+ K C CG +GH + ECP
Sbjct: 131 QAIEALHGTSFKGRPLSVELSKVQP------SKQAPTGKIPCVNCGKQGHYAGECP 180
>gi|28059803|gb|AAO30095.1| splicing factor-like protein [Arabidopsis thaliana]
Length = 527
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG P+ +YV NL + ++ L +F FG + V + D T + +G FIQFVQ+
Sbjct: 258 GGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 317
Query: 113 DALSAARAIHGKV-LNGRTVNASIAADN 139
+ +A A++GK+ + GRT+ S +D+
Sbjct: 318 HSKAAQIALNGKLEIAGRTIKVSSVSDH 345
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TV+ + T D++ FS GK+ V ++ DR +R+S+GV +I+F + ++ A A
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM-SVPMAIA 227
Query: 121 IHGKVLNGRTV 131
+ G++ G+ V
Sbjct: 228 LSGQLFLGQPV 238
>gi|189339246|ref|NP_446148.1| putative RNA-binding protein 3 [Rattus norvegicus]
gi|149028410|gb|EDL83795.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
gi|149028411|gb|EDL83796.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|444518692|gb|ELV12325.1| Putative RNA-binding protein 3 [Tupaia chinensis]
Length = 154
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|417396333|gb|JAA45200.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 158
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|432889402|ref|XP_004075259.1| PREDICTED: uncharacterized protein LOC101155211 [Oryzias latipes]
Length = 251
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF++F DA A + +
Sbjct: 18 VYVGDLGNGAAKGELERAFSYYGPLRSVWV-----ARNPPGFAFVEFEDPRDAEDAVKGM 72
Query: 122 HGKVLNGRTVNASIAADNGR-ASSFIKKRVYKDKSRCYECGDEGHLSYECPR 172
GK+L G V ++ R + +R + +CY+CGD GH +Y+C R
Sbjct: 73 DGKLLCGSRVRVEMSTGLSRKGRGRLSRRQFDPNDKCYQCGDRGHYAYDCYR 124
>gi|149744489|ref|XP_001493789.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Equus
caballus]
Length = 156
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST V+V NL T DL LF TFGK+ K +G AF+ DAL
Sbjct: 79 PLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLEC--------DKVKGYAFVHMETKEDAL 130
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A+HG GR ++ ++ K+ K C CG +GH + ECP
Sbjct: 131 QAIEALHGTSFKGRPLSVELSKVQP------SKQTPTGKIPCVNCGKQGHYAGECP 180
>gi|241087427|ref|XP_002409192.1| translation initiation factor 3, subunit G, putative [Ixodes
scapularis]
gi|215492661|gb|EEC02302.1| translation initiation factor 3, subunit G, putative [Ixodes
scapularis]
Length = 277
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+T+ V+NL + +SDL LF FG+IAR+ + KD+ T +S+G AFI FV DA A
Sbjct: 195 ATIRVTNLSEDVRDSDLQDLFRPFGQIARIYLAKDKVTGQSKGFAFINFVHREDAARAIA 254
Query: 120 AIHG 123
++HG
Sbjct: 255 SVHG 258
>gi|18416114|ref|NP_568220.1| RNA-binding protein 39 [Arabidopsis thaliana]
gi|15451046|gb|AAK96794.1| splicing factor-like protein [Arabidopsis thaliana]
gi|332004077|gb|AED91460.1| RNA-binding protein 39 [Arabidopsis thaliana]
Length = 527
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG P+ +YV NL + ++ L +F FG + V + D T + +G FIQFVQ+
Sbjct: 258 GGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 317
Query: 113 DALSAARAIHGKV-LNGRTVNASIAADN 139
+ +A A++GK+ + GRT+ S +D+
Sbjct: 318 HSKAAQIALNGKLEIAGRTIKVSSVSDH 345
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TV+ + T D++ FS GK+ V ++ DR +R+S+GV +I+F + ++ A A
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM-SVPMAIA 227
Query: 121 IHGKVLNGRTV 131
+ G++ G+ V
Sbjct: 228 LSGQLFLGQPV 238
>gi|4098582|gb|AAD00328.1| RBM1 [Sminthopsis macroura]
Length = 390
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L ++F +G+I V ++KDR T KSRG AFI F DA AAR +
Sbjct: 10 LFIGGLNTETNEKGLESVFGKYGRIVEVLLMKDRETNKSRGFAFITFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+++ A
Sbjct: 70 NGKSLDGKSIKVEQA 84
>gi|82248148|sp|Q9PTX2.1|CIRBP_RANCA RecName: Full=Cold-inducible RNA-binding protein; Short=BFCIRP;
AltName: Full=Glycine-rich RNA-binding protein CIRP
gi|6682989|dbj|BAA88978.1| BFCIRP [Rana catesbeiana]
Length = 164
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L + L T+FS +G+I V V+KDR T++SRG F+ F DA
Sbjct: 1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A ++GK ++GR + A
Sbjct: 61 KDAMAGMNGKTVDGRQIRVDQAG 83
>gi|374287894|ref|YP_005034979.1| putative RNA-binding protein [Bacteriovorax marinus SJ]
gi|301166435|emb|CBW26011.1| putative RNA-binding protein [Bacteriovorax marinus SJ]
Length = 166
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
K VY+ NL Y + + LF FG + +V +++D +S+G+AF++ I A A
Sbjct: 39 QKPVVYIGNLSYKRNDYGILKLFKPFGYVVKVNLIQDEKLDRSKGIAFVEMQTIKAAKDA 98
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKR 149
+ ++G +++GRT+ SIA D I KR
Sbjct: 99 VKGLNGTLVDGRTIKVSIAEDRIHPEHAIMKR 130
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST V+V NL T DL LF TFGK+ K +G AF+ DAL
Sbjct: 79 PLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLEC--------DKVKGYAFVHMENKEDAL 130
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A A+HG GR ++ ++ K+ K C CG +GH + ECP
Sbjct: 131 QAIEALHGTSFKGRPLSVELSKVQP------SKQTPTGKIPCVNCGKQGHYAGECP 180
>gi|449673467|ref|XP_002159702.2| PREDICTED: nucleolysin TIAR-like [Hydra magnipapillata]
Length = 352
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++Y NLD + DL F FG+I + V++D T S+ +AFI F PDA A R
Sbjct: 108 SIYCGNLDDTIDEEDLKAAFEVFGEILNIKVVRDPVTNHSKNIAFISFTNKPDAEKAIRE 167
Query: 121 IHGKVLNGRTVNASIAADN 139
+HG +L R + + A N
Sbjct: 168 MHGAMLKTRAIKTNWATRN 186
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
A + V+V NL + N+ L FS FG++ VLKDR T +SRG F+ F A
Sbjct: 7 AAPGTKVFVGNLSWGTDNNSLADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSSPESAS 66
Query: 116 SAARAIHGKVLNGRTVNASIA 136
+A A++G+ LNGR + ++A
Sbjct: 67 AAVDAMNGQDLNGRNIRVNLA 87
>gi|410988519|ref|XP_004000531.1| PREDICTED: putative RNA-binding protein 3 [Felis catus]
Length = 160
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGA 89
>gi|168064322|ref|XP_001784112.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664363|gb|EDQ51086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 50 KGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV 109
+G GG + + +Y+SNLDY ++N D+ LFS G + R ++ DR+ R S+G A + F+
Sbjct: 81 RGVGGGIETGTKLYISNLDYGVSNDDIKELFSEIGDLRRCSINYDRSGR-SKGTAEVVFM 139
Query: 110 QIPDALSAARAIHGKVLNGRTVNASIAADN 139
+ PDAL+A + + L+G+ + I N
Sbjct: 140 RKPDALNAVKRYNNVQLDGKPMKIEIIGTN 169
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST +V N+ + TN +L F +G + ++KD AF+ ++ DA+
Sbjct: 74 PKTSTKPHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAM 125
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
A + G+ ++ ++ R + + +R + CY CG EGH S ECP +Q
Sbjct: 126 EAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGER-----TGCYRCGQEGHWSKECPLDQN 180
Query: 176 GP-RERPMPKKLRRRSDGEDESEFDDGG 202
G RE P S+G FD GG
Sbjct: 181 GSYREGP-------SSEGFGPVRFDSGG 201
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL T ++ +LFS +GKI+ ++K+ F+ +A A + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--------FGFVHMDSKSEADEAIQNL 55
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRC 157
H +LNG +N ++ G+ + K V S C
Sbjct: 56 HHYMLNGMAMNVEMS--KGKPKTSTKPHVGNISSSC 89
>gi|227206234|dbj|BAH57172.1| AT5G09880 [Arabidopsis thaliana]
Length = 505
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG P+ +YV NL + ++ L +F FG + V + D T + +G FIQFVQ+
Sbjct: 236 GGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 295
Query: 113 DALSAARAIHGKV-LNGRTVNASIAADN 139
+ +A A++GK+ + GRT+ S +D+
Sbjct: 296 HSKAAQIALNGKLEIAGRTIKVSSVSDH 323
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TV+ + T D++ FS GK+ V ++ DR +R+S+GV +I+F + ++ A A
Sbjct: 147 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV-MSVPMAIA 205
Query: 121 IHGKVLNGRTV 131
+ G++ G+ V
Sbjct: 206 LSGQLFLGQPV 216
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++YV NL + + N+ L +FS G + V+ DR TR+SRG F+ + A A
Sbjct: 221 SIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAA 280
Query: 121 IHGKVLNGRTVNASIAADNGRASSF 145
+ G+ L+GR + S+A D R SF
Sbjct: 281 LDGQSLDGRPIRVSVAEDRPRRGSF 305
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 13 EEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLA--PSKSTVYVSNLDYA 70
EEDDT ++ G S + A ++S P+ + G A P ++ ++V NL Y
Sbjct: 81 EEDDTATFQDEEQG------LSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYD 134
Query: 71 LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130
+ + L LF G + V+ +R T +SRG F+ + +A +A +GR
Sbjct: 135 VDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRL 194
Query: 131 VNASIAADNG 140
+ + A+ G
Sbjct: 195 LTVNKASPRG 204
>gi|148684912|gb|EDL16859.1| mCG120440 [Mus musculus]
Length = 366
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 41 LFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPADAKAAARDM 100
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 101 NGKSLDGKAIKVAQA 115
>gi|320580913|gb|EFW95135.1| eukaryotic translation initiation factor 3 Rna-binding subunit,
putative [Ogataea parapolymorpha DL-1]
Length = 286
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 19/117 (16%)
Query: 26 GNAPANPSSSSSADVTSSG-----PHKKSKGSGGLAPS--------KSTVYVSNLDYALT 72
+A A P S +A S G PH + K +GG AP +T+ V++L+ +
Sbjct: 159 ASAAATPEPSMAAVAGSGGVRYVPPHLR-KRAGGAAPEAERKERDDSTTLRVTSLNEQVD 217
Query: 73 NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129
L +F +G I R TVL+DR TR+S+G+AF++F + D A RA+ G LNGR
Sbjct: 218 EMMLREVFERYGIIKRATVLRDRETRRSKGIAFVEFENVND---AQRALEG--LNGR 269
>gi|193636560|ref|XP_001952396.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Acyrthosiphon pisum]
gi|328724544|ref|XP_003248180.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Acyrthosiphon pisum]
Length = 181
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV +L + + DL FS +G I V V R G AF++F DA A R +
Sbjct: 17 IYVGDLGSSASKQDLEDAFSYYGSIRNVWV-----ARNPPGFAFVEFEDPRDAEDAVRGL 71
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEGHLSYECPRNQLG 176
G+ + GR V ++ R ++ + + +CYECGD GH + +C R + G
Sbjct: 72 DGRSICGRRVRVELSNAGSRKGAYRGGPPRRGRPFHPEDKCYECGDRGHYARDCRRFKGG 131
>gi|388852088|emb|CCF54264.1| related to Nucleolar protein NOP4 [Ustilago hordei]
Length = 1057
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 38 ADVTSSGPHKKSKGSGGLAPS-KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA 96
A ++ P+K S P ST+++S L Y T +DL T+FS G + R V+ D+
Sbjct: 27 ATASTESPNKSKNRSHNREPKVNSTLFISRLPYTATTTDLQTMFSEIGPLKRAFVVTDQE 86
Query: 97 TRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128
T+KS+GV ++ F DA +A + G L+G
Sbjct: 87 TKKSKGVGYVTFAIPEDANTALEQLQGSSLDG 118
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+T++V NL Y T +L LF TFG + + D+ T +S+G F+ F Q A +A
Sbjct: 590 TTLFVRNLPYQATEEELRNLFRTFGPLRYAKITMDKTTNRSKGTGFVCFWQADSAEAA 647
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 27 NAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKI 86
NAP +P+ +S+ADV + + GS AP +++YV LD ++T + L LFS+ G++
Sbjct: 22 NAPESPTPTSAADVVQT---PTASGSTN-APHSASLYVGELDPSVTEAMLFELFSSIGQV 77
Query: 87 ARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129
A + V +D TR+S G A++ + D A ++ ++ GR
Sbjct: 78 ASIRVCRDAVTRRSLGYAYVNYNNTADGERALEELNYTLIKGR 120
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V++ NLD A+ N LH F+ FG I V +D S+G F+ + A +A + +
Sbjct: 141 VFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETAEAATNAIKHV 199
Query: 122 HGKVLNGRTV 131
+G +LN + V
Sbjct: 200 NGMLLNEKKV 209
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VYV N+D +++ + TLF FG+I ++ +D + SRG F+ F A +A
Sbjct: 232 TNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVD 291
Query: 120 AIHGKVLNGRTV 131
A+H L G+ +
Sbjct: 292 ALHETELKGQAL 303
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV+NL + + NS L +FS GKI V+ DR T +SRG F+ + A A+
Sbjct: 208 IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAAL 267
Query: 122 HGKVLNGRTVNASIAADNGRASSF 145
G+ L GRT+ S+A D R SF
Sbjct: 268 DGQSLEGRTIRVSVAEDRPRRGSF 291
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 41 TSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
T +G ++G P + ++V N + + + L LF G + V+ +R T S
Sbjct: 90 TETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLS 149
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNG 140
RG F+ + +A SA +G NGR++ + A+ G
Sbjct: 150 RGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNKASPKG 189
>gi|82802777|gb|ABB92439.1| RBM1 [Hylobates lar]
Length = 385
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|374372622|ref|ZP_09630284.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373235153|gb|EHP54944.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 90
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD---ALSAA 118
++VSNL Y+ T+ DL LFS++G + V+ D+ TR+SRG FV++PD A+ A
Sbjct: 3 IFVSNLGYSFTSEDLSELFSSYGAVDSARVITDKITRQSRGFG---FVEMPDENAAIKAI 59
Query: 119 RAIHGKVLNGRTVNASIA 136
R ++G + +GR++ S A
Sbjct: 60 RDLNGTMQDGRSIKVSEA 77
>gi|443896410|dbj|GAC73754.1| nucleolar protein fibrillarin NOP77 [Pseudozyma antarctica T-34]
Length = 1060
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 48 KSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQ 107
KSK G P+ +T++VS L Y T +DL TLFS G + R V+ D+AT++S+GV ++
Sbjct: 41 KSKEKGKDRPN-ATLFVSRLPYTATTTDLQTLFSEIGPLKRAFVVTDQATKRSKGVGYVT 99
Query: 108 FVQIPDALSAARAIHGKVLNG 128
F DA +A + K L+G
Sbjct: 100 FAIPEDAQTALDQLQEKSLDG 120
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD---ALS 116
+T++V NL Y T +L LF TFG + + D+AT +S+G F+ F Q AL+
Sbjct: 595 TTLFVRNLPYQATEEELRNLFRTFGPLRYAKITMDKATNRSKGTGFVCFWQAESADAALA 654
Query: 117 AARAIH 122
AR I
Sbjct: 655 QARIIE 660
>gi|82802775|gb|ABB92438.1| RBM1 [Pongo pygmaeus]
Length = 385
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|323508056|emb|CBQ67927.1| related to Nucleolar protein NOP4 [Sporisorium reilianum SRZ2]
Length = 1039
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+T+++S L Y T++DL T FS G + R V+ D+AT+KS+GV ++ F DA +A
Sbjct: 45 ATLFISRLPYTATSTDLQTTFSEIGPLKRAFVVTDQATKKSKGVGYVTFAIPEDANTALE 104
Query: 120 AIHGKVLNG 128
+ GK L+G
Sbjct: 105 QLQGKSLDG 113
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
+T++V NL Y T +L LF TFG + + D+ T +S+G F+ F Q
Sbjct: 572 TTLFVRNLPYQATEEELRNLFRTFGPLRYAKITMDKTTNRSKGTGFVCFWQ 622
>gi|407262829|ref|XP_003945671.1| PREDICTED: putative RNA-binding protein 3-like [Mus musculus]
Length = 154
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ L+GR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAG 83
>gi|356512219|ref|XP_003524818.1| PREDICTED: multiple RNA-binding domain-containing protein 1-like
[Glycine max]
Length = 149
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P S + V NL Y+ + L FS FGKIA ++KD T++S+G+AFIQ+ DA+
Sbjct: 37 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEGKLVKDMNTKRSKGIAFIQYTCQDDAML 96
Query: 117 AARAIHGKVLNGRTVNASIA 136
A + K GRT+ IA
Sbjct: 97 ALETMDQKDFYGRTIGVEIA 116
>gi|281353659|gb|EFB29243.1| hypothetical protein PANDA_006181 [Ailuropoda melanoleuca]
Length = 148
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|82802771|gb|ABB92436.1| RBM1 [Pan troglodytes]
gi|82802773|gb|ABB92437.1| RBM1 [Gorilla gorilla]
Length = 385
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|338729124|ref|XP_003365829.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Equus
caballus]
Length = 135
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|82802769|gb|ABB92435.1| RBM1 [Homo sapiens]
Length = 384
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|47224788|emb|CAG06358.1| unnamed protein product [Tetraodon nigroviridis]
Length = 226
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF++F DA A + +
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRTVWV-----ARNPPGFAFVEFEDPRDAEDAVKGM 70
Query: 122 HGKVLNGRTVNASIAAD-----NGRASSFIKKRVYKDKSRCYECGDEGHLSYECPR 172
GK+L G V ++ GR S +R + RCY+CGD GH +Y+C R
Sbjct: 71 DGKLLCGSRVRVEMSTGLSRKGRGRPS----RRQFDPNDRCYQCGDRGHYAYDCYR 122
>gi|9758966|dbj|BAB09409.1| splicing factor-like protein [Arabidopsis thaliana]
Length = 604
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG P+ +YV NL + ++ L +F FG + V + D T + +G FIQFVQ+
Sbjct: 258 GGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 317
Query: 113 DALSAARAIHGKV-LNGRTVNASIAADN 139
+ +A A++GK+ + GRT+ S +D+
Sbjct: 318 HSKAAQIALNGKLEIAGRTIKVSSVSDH 345
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TV+ + T D++ FS GK+ V ++ DR +R+S+GV +I+F + ++ A A
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM-SVPMAIA 227
Query: 121 IHGKVLNGRTV 131
+ G++ G+ V
Sbjct: 228 LSGQLFLGQPV 238
>gi|221065733|ref|ZP_03541838.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|264678761|ref|YP_003278668.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
gi|220710756|gb|EED66124.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|262209274|gb|ACY33372.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
Length = 113
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++T+S L + F+ FG + V+ DR T +S+G AF++ + +A +
Sbjct: 5 IYVGNLPYSVTDSSLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISGL 64
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSR 156
HG ++GR++ ++A F R ++ SR
Sbjct: 65 HGMSVDGRSIVVNLAKPREEGRGFGGNREFRASSR 99
>gi|82802779|gb|ABB92440.1| RBM1 [Chlorocebus sabaeus]
Length = 385
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|225543108|ref|NP_001139415.1| sex lethal [Tribolium castaneum]
Length = 218
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +Y++NL +T D+H LFS +G+I + +VLKD+ T RGVAF++F + +A +A
Sbjct: 113 SNLYITNLPKDVTEDDVHRLFSNYGEIIQKSVLKDKITGMPRGVAFVRFSRGEEAKAAIA 172
Query: 120 AIHGKVLNGRTVNAS--IAADNGR 141
+ GK+L + S +A D+GR
Sbjct: 173 DLDGKLLENAMLPLSVRVAEDHGR 196
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
KS + V+ + T DL +F+ G++ + +++D T S G F+++ DA A
Sbjct: 26 KSKLIVNYIPQFATEEDLALIFTPIGRVESIKIMRDYNTGYSFGFGFVKYFNEEDAAKAI 85
Query: 119 RAIHG 123
+ I+G
Sbjct: 86 QVING 90
>gi|332809466|ref|XP_003339040.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 [Pan
troglodytes]
gi|332809468|ref|XP_003308251.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 [Pan
troglodytes]
gi|426330271|ref|XP_004026144.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 3
[Gorilla gorilla gorilla]
gi|426330273|ref|XP_004026145.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 4
[Gorilla gorilla gorilla]
Length = 391
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|350535477|ref|NP_001233126.1| cold-inducible RNA-binding protein [Sus scrofa]
gi|330847371|gb|AEC46651.1| cold inducible RNA binding protein transcript variant 3 [Sus
scrofa]
Length = 144
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SR F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>gi|21361809|ref|NP_062556.2| RNA binding motif protein, X-linked-like-1 [Homo sapiens]
gi|242117971|ref|NP_001156008.1| RNA binding motif protein, X-linked-like-1 [Homo sapiens]
gi|74760797|sp|Q96E39.1|RMXL1_HUMAN RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
Contains: RecName: Full=RNA binding motif protein,
X-linked-like-1, N-terminally processed
gi|15277908|gb|AAH12942.1| Cysteine conjugate-beta lyase 2 [Homo sapiens]
gi|57997143|emb|CAI46148.1| hypothetical protein [Homo sapiens]
gi|119593561|gb|EAW73155.1| hCG23341, isoform CRA_b [Homo sapiens]
gi|119593562|gb|EAW73156.1| hCG23341, isoform CRA_b [Homo sapiens]
gi|208967733|dbj|BAG72512.1| cysteine conjugate-beta lyase 2 [synthetic construct]
Length = 390
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|296121725|ref|YP_003629503.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
gi|296014065|gb|ADG67304.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
Length = 104
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + NS L LFS+FG++ V+ DR T +S+G F++F A A A+
Sbjct: 5 LYVGNLTYDVNNSGLEQLFSSFGEVRSAQVVMDRETGRSKGFGFVEFGDSQSASDAINAM 64
Query: 122 HGKVLNGR--TVN 132
+GK +NGR TVN
Sbjct: 65 NGKDVNGRALTVN 77
>gi|270009354|gb|EFA05802.1| hypothetical protein TcasGA2_TC030646 [Tribolium castaneum]
Length = 212
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +Y++NL +T D+H LFS +G+I + +VLKD+ T RGVAF++F + +A +A
Sbjct: 113 SNLYITNLPKDVTEDDVHRLFSNYGEIIQKSVLKDKITGMPRGVAFVRFSRGEEAKAAIA 172
Query: 120 AIHGKVLNGRTVNAS--IAADNGR 141
+ GK+L + S +A D+GR
Sbjct: 173 DLDGKLLENAMLPLSVRVAEDHGR 196
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
KS + V+ + T DL +F+ G++ + +++D T S G F+++ DA A
Sbjct: 26 KSKLIVNYIPQFATEEDLALIFTPIGRVESIKIMRDYNTGYSFGFGFVKYFNEEDAAKAI 85
Query: 119 RAIHG 123
+ I+G
Sbjct: 86 QVING 90
>gi|332255488|ref|XP_003276864.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Nomascus
leucogenys]
Length = 157
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|297279100|ref|XP_002801676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 1
[Macaca mulatta]
gi|297279102|ref|XP_002801677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 2
[Macaca mulatta]
Length = 391
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|387018118|gb|AFJ51177.1| Heterogeneous nuclear ribonucleoprotein G-like [Crotalus
adamanteus]
Length = 384
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFVGGLNIETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+++ A
Sbjct: 70 NGKSLDGKSIKVEQA 84
>gi|195454362|ref|XP_002074207.1| GK12741 [Drosophila willistoni]
gi|194170292|gb|EDW85193.1| GK12741 [Drosophila willistoni]
Length = 280
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP +++ G P + + V NLDY ++N D+ LF+ FG + + V DR+ R S G
Sbjct: 105 GPKRRAAAGGSSLPGPTRLIVGNLDYGVSNMDIKELFNDFGPMKKAAVHYDRSGR-SLGT 163
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
A + F + DAL A + HG L+GR + +A
Sbjct: 164 ADVIFERRSDALKAIKQYHGVPLDGRPMTIQLA 196
>gi|5803137|ref|NP_006734.1| putative RNA-binding protein 3 [Homo sapiens]
gi|383872909|ref|NP_001244635.1| RNA binding motif (RNP1, RRM) protein 3 [Macaca mulatta]
gi|332860686|ref|XP_521047.2| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan
troglodytes]
gi|332860688|ref|XP_003317502.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan
troglodytes]
gi|397471359|ref|XP_003807263.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan paniscus]
gi|397471361|ref|XP_003807264.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan paniscus]
gi|402910082|ref|XP_003917720.1| PREDICTED: putative RNA-binding protein 3 [Papio anubis]
gi|426395802|ref|XP_004064149.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Gorilla
gorilla gorilla]
gi|426395804|ref|XP_004064150.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Gorilla
gorilla gorilla]
gi|1710620|sp|P98179.1|RBM3_HUMAN RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3; AltName: Full=RNPL
gi|881954|gb|AAB17212.1| RNPL [Homo sapiens]
gi|13905080|gb|AAH06825.1| RNA binding motif (RNP1, RRM) protein 3 [Homo sapiens]
gi|119571152|gb|EAW50767.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|119571153|gb|EAW50768.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|380815298|gb|AFE79523.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815300|gb|AFE79524.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815302|gb|AFE79525.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420491|gb|AFH33459.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420493|gb|AFH33460.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948600|gb|AFI37905.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948602|gb|AFI37906.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|410228038|gb|JAA11238.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|355757333|gb|EHH60858.1| RNA-binding motif protein 3 [Macaca fascicularis]
Length = 157
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|145298735|ref|YP_001141576.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|142851507|gb|ABO89828.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 92
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y +T +L T+FS FG++ +V ++ DR T +S+G FI+ DA A +
Sbjct: 3 IYVGNLSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGL 62
Query: 122 HGKVLNGRTVNASIA 136
HG + GRT+ + A
Sbjct: 63 HGTEIGGRTITVNQA 77
>gi|384497191|gb|EIE87682.1| hypothetical protein RO3G_12393 [Rhizopus delemar RA 99-880]
Length = 267
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 13/101 (12%)
Query: 36 SSADVTSSGP------HKKSKGSGGLAPS-------KSTVYVSNLDYALTNSDLHTLFST 82
++ +VTS+GP H ++KG+ S +T+ V+NL +T+SD++ LF+
Sbjct: 151 ANTEVTSTGPSKYTPPHLRNKGAPSAGESMREKRDDSATLRVTNLSEDVTDSDIYDLFNR 210
Query: 83 FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
FG IARV + +DR T +G AF+ F DA A +AI+G
Sbjct: 211 FGSIARVYLARDRETNLCKGFAFVSFNNREDADRAQQAING 251
>gi|281201992|gb|EFA76199.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 874
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ NL Y +T DL LF FGK++ + + DR ++KS+G+AF+ F+ +A+ A +
Sbjct: 328 LFIRNLAYTVTEDDLKKLFEPFGKLSEIYIPIDRNSKKSKGIAFLLFMIPENAMRAMTEM 387
Query: 122 HGKVLNGRTVN 132
GK + GR V+
Sbjct: 388 DGKAIQGRLVH 398
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G+ SK+ + V N+ + T ++L T+FS FG++ARV + +R +A ++F
Sbjct: 506 GGKGIERSKTVILVKNIPHKTTQTELETMFSRFGELARVLLT------PARTLALLEFYH 559
Query: 111 IPDA 114
+ +A
Sbjct: 560 VSEA 563
>gi|289741385|gb|ADD19440.1| putative splicing factor [Glossina morsitans morsitans]
Length = 191
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 49 SKGSGGLAPSKS----TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
S SGG P + ++ V NL Y T DL +F G++ + + +DR TR+SRG A
Sbjct: 2 SHNSGGRPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 61
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASS 144
F++F DA A A+ G+ L+GR + +A GR +S
Sbjct: 62 FVRFYDKRDAEDALEAMDGRKLDGRELRVQMAR-YGRPTS 100
>gi|296235404|ref|XP_002762884.1| PREDICTED: putative RNA-binding protein 3 [Callithrix jacchus]
Length = 159
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|431893576|gb|ELK03439.1| Putative RNA-binding protein 3 [Pteropus alecto]
Length = 213
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 58 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 117
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 118 SDAMRAMNGESLDGRQIRVDHAGKSARGT 146
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
L P S V++ L T DLH L FG+I+ V ++KD+ T++++G AF+ F A
Sbjct: 104 LPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGA 163
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
A +H K GRT+ S++
Sbjct: 164 QHAIEDLHDKEHKGRTLRCSLS 185
>gi|410910550|ref|XP_003968753.1| PREDICTED: uncharacterized protein LOC101078845 [Takifugu rubripes]
Length = 222
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L FS +G + V V R G AF++F DA A + +
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRTVWV-----ARNPPGFAFVEFEDPRDAEDAVKGM 70
Query: 122 HGKVLNGRTVNASIAAD-----NGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK+L G V ++ GR S +R + RCY+CGD GH +Y+C
Sbjct: 71 DGKLLCGSRVRVEMSTGLSRKGRGRPS----RRQFDPNDRCYQCGDRGHYAYDC 120
>gi|385305163|gb|EIF49154.1| translation initiation factor eif3g [Dekkera bruxellensis AWRI1499]
Length = 281
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 45 PHKKSKGSGGLAPSKS--------TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA 96
PH + +G+ G P S TV V+NL+ L+ L +FS FG + R+T+L++R
Sbjct: 177 PHLR-RGANGELPKASEAQKEVTTTVRVTNLNTMLSEDLLREIFSRFGYVQRLTILRNRE 235
Query: 97 TRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNG 140
T +SRG+AF++ + A SA ++G+ + +NA A G
Sbjct: 236 TGESRGIAFVEMDTVEHAKSAIEKLNGRGIMNLIINADFAKPRG 279
>gi|384245230|gb|EIE18725.1| hypothetical protein COCSUDRAFT_20380 [Coccomyxa subellipsoidea
C-169]
Length = 876
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Query: 7 NKSDSDEEDDTFYYRYASTGNAPANPSSSSSA--DVTSSGPHKKSKGSGGLAPSKSTVYV 64
+ SD DE D R S G A N SA +V + + + +G L +V
Sbjct: 282 DDSDGDELD---LDRMGSHGKAGTNIGGEGSAAEEVRAQTKEARIEETGRL-------FV 331
Query: 65 SNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124
NL Y+ T +DL F G+++ V ++ D+ATRKS+G A IQ+ ++ DA++A +
Sbjct: 332 RNLPYSATEADLAEAFGQHGQLSEVHIVVDKATRKSKGFALIQYEEVADAITAKEELDES 391
Query: 125 VLNGRTVN------------ASIAADNGRASSFIKKRVYKDKSRCYE 159
+ GR ++ A+ A R S ++K++ S C E
Sbjct: 392 IFQGRLLHVLPAHRPPPQRSAAQAEARPRTDSLLRKQLACLTSICRE 438
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 1 MAKKKKNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKS 60
+A KK+ S D G A PS+ +A +G K+KG+
Sbjct: 712 IAIKKQQGSILDGHKLALQLSLRKVGGKAAKPSAKETAAAADTG---KAKGT-------- 760
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+ V N+ + T D+ LF+ FG+I + L + RG AF+ F+ +A SAA A
Sbjct: 761 KLVVRNVAFEATRKDVAALFAPFGQI-KSCRLPKKFDGSHRGFAFVDFLTKQEAKSAAEA 819
Query: 121 IHGKVLNGR 129
+ G L GR
Sbjct: 820 VAGTHLYGR 828
>gi|194761376|ref|XP_001962905.1| GF15672 [Drosophila ananassae]
gi|190616602|gb|EDV32126.1| GF15672 [Drosophila ananassae]
Length = 199
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 51 GSGGLAPSKS-----TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
G GG P ++ V NL Y T DL +F G++ + + +DR TR+SRG AF
Sbjct: 6 GLGGARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 65
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASS 144
++F DA A A+ G++L+GR + +A GR SS
Sbjct: 66 VRFYDKRDAEDALEAMDGRMLDGRELRVQMAR-YGRPSS 103
>gi|351706516|gb|EHB09435.1| Putative RNA-binding protein 3 [Heterocephalus glaber]
Length = 157
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ L+GR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAG 83
>gi|37497112|ref|NP_058089.2| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|261862337|ref|NP_001159881.1| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|26340316|dbj|BAC33821.1| unnamed protein product [Mus musculus]
gi|26352956|dbj|BAC40108.1| unnamed protein product [Mus musculus]
gi|37589528|gb|AAH59098.1| Rbm3 protein [Mus musculus]
Length = 154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ L+GR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAG 83
>gi|87308451|ref|ZP_01090592.1| RNA-binding protein [Blastopirellula marina DSM 3645]
gi|87289008|gb|EAQ80901.1| RNA-binding protein [Blastopirellula marina DSM 3645]
Length = 149
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y +S+L LF +G++A +V+ DR T +SRG F++ DAL+A A+
Sbjct: 5 LYVGNLPYGYGSSELENLFGQYGQVASASVINDRETGRSRGFGFVEMASDGDALAATEAL 64
Query: 122 HGKVLNGRTV 131
+G ++GR +
Sbjct: 65 NGFDVDGRKL 74
>gi|428203936|ref|YP_007082525.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427981368|gb|AFY78968.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 97
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+++V NL Y +T +DL+++F+ +G + RV + DR T + RG AF++ + SA A
Sbjct: 2 SIFVGNLSYEVTQADLNSVFAEYGSVKRVHIPTDRETGRMRGFAFVEMETAAEETSAIEA 61
Query: 121 IHGKVLNGRTVNASIA------ADNGRASSFIKKR 149
+ G GR + + A DNGR++S KR
Sbjct: 62 LDGAEWYGREMKVNQAKPRENNGDNGRSNSNYSKR 96
>gi|189241002|ref|XP_968789.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
Length = 200
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S VYV +L + + +L F +G + V V R G AF++F DA A
Sbjct: 6 SDCKVYVGDLGNSASKQELEDAFRYYGPLRNVWV-----ARNPPGFAFVEFEDARDAEDA 60
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSF--------IKKRVYKDKSRCYECGDEGHLSYE 169
R + G+ + GR A + NG++ S + R + RCYECGD GH + +
Sbjct: 61 IRGLDGRTICGRR--ARVEMSNGKSGSGRYRGPPPRSRGRPFHPDDRCYECGDRGHYARD 118
Query: 170 CPR 172
C R
Sbjct: 119 CNR 121
>gi|261862339|ref|NP_001159882.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|261862342|ref|NP_001159883.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|6093936|sp|O89086.1|RBM3_MOUSE RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
gi|3395381|dbj|BAA32060.1| rbm3 [Mus musculus]
gi|12834559|dbj|BAB22957.1| unnamed protein product [Mus musculus]
gi|12840849|dbj|BAB24981.1| unnamed protein product [Mus musculus]
gi|13879226|gb|AAH06580.1| Rbm3 protein [Mus musculus]
gi|15983757|gb|AAL10707.1| RNA-binding motif protein 3 [Mus musculus]
gi|74180334|dbj|BAE32335.1| unnamed protein product [Mus musculus]
gi|74198712|dbj|BAE39828.1| unnamed protein product [Mus musculus]
gi|74228699|dbj|BAE21846.1| unnamed protein product [Mus musculus]
gi|76780243|gb|AAI06177.1| Rbm3 protein [Mus musculus]
gi|148702004|gb|EDL33951.1| mCG116386, isoform CRA_a [Mus musculus]
gi|148702009|gb|EDL33956.1| mCG116386, isoform CRA_a [Mus musculus]
Length = 153
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ L+GR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAG 83
>gi|172046472|emb|CAQ34908.1| SR family splicing factor SC35 [Chironomus tentans]
Length = 167
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G + + + +DR TR+SRG AF++F + DA A + + G
Sbjct: 19 VDNLTYRTTPEDLRRVFERCGSVGDIYIPRDRHTRESRGFAFVRFYEKRDAEEALQEMDG 78
Query: 124 KVLNGRTVNASIAADNGRASS 144
+VL+GR + +A GR +S
Sbjct: 79 RVLDGRELRVQMAR-YGRPTS 98
>gi|221221656|gb|ACM09489.1| Splicing factor, arginine/serine-rich 7 [Salmo salar]
Length = 272
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L F+ +G + V V R G AF+++ DA A + +
Sbjct: 17 VYVGDLGNGAAKGELERAFNYYGPLRSVWV-----ARNPPGFAFVEYEDPRDAEDATKGM 71
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYECPR 172
GKVL G + ++ R S + +R + RCY+CG+ GH +Y+C R
Sbjct: 72 DGKVLCGARIRVELSTGMSRKSRHDRPSRRHFDPNDRCYQCGENGHYAYDCYR 124
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +YV NL Y++T++ L + FS FG ++ V+ DR T +S+G F++ A +A
Sbjct: 3 SKIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAIS 62
Query: 120 AIHGKVLNGRTVNASIA 136
+HG ++GRT+ ++A
Sbjct: 63 GLHGMSVDGRTIVVNLA 79
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 37/168 (22%)
Query: 48 KSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQ 107
KS+GS + ++V N+ A TN +L F FG + ++K+ AF+
Sbjct: 73 KSRGS-------TKLHVGNI--ACTNQELRAKFEEFGAVLECDIVKN--------YAFVH 115
Query: 108 FVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLS 167
++ DA+ A + G+ ++ ++ R + + D+S CY CG EGH S
Sbjct: 116 MERMEDAMEAINKLDNTAFKGKLMSVKLSTSRLRTAPGMG-----DRSGCYRCGQEGHWS 170
Query: 168 YECPRNQLGPRERPMPKKLRRRSDGEDESEFDDGGWASVVDGGAEERL 215
ECP +Q G +R+ E +SE+D G+ GG E+ +
Sbjct: 171 KECPLDQNG----------FQRNGSEPKSEYDASGF-----GGREQSM 203
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ NL T +L +LFS +GKIA +++K+ F+ +A A R +
Sbjct: 4 IFIGNLAPETTTEELRSLFSQYGKIAECSIVKN--------FGFVHMDSKAEAEEAIRNL 55
Query: 122 HGKVLNGRTVNASIAADNGRASS 144
H LN + +N ++ R S+
Sbjct: 56 HQYELNAQPMNVELSRGKSRGST 78
>gi|357122439|ref|XP_003562923.1| PREDICTED: uncharacterized protein LOC100844345 [Brachypodium
distachyon]
Length = 206
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++ NL ++ T+ L F FG + V+ D+ + +SRG AF+ F + D +A +
Sbjct: 9 CFIGNLSWSTTDESLKDAFRKFGNVTEAKVVLDKFSGRSRGFAFVTFDEKKDMEAAIEDM 68
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVY-------KDKSR----------------CY 158
+G L+GR + A G R Y D+ R C+
Sbjct: 69 NGLDLDGRAITVDKAQPQGAGRDRNGDRDYDRDRGSRNDRGRDSGGGRAPRGSGGGGDCF 128
Query: 159 ECGDEGHLSYECPRNQLGPRER 180
+CG GH + ECP G +R
Sbjct: 129 KCGKPGHFARECPDGDGGRGDR 150
>gi|302757806|ref|XP_002962326.1| hypothetical protein SELMODRAFT_78193 [Selaginella moellendorffii]
gi|300169187|gb|EFJ35789.1| hypothetical protein SELMODRAFT_78193 [Selaginella moellendorffii]
Length = 89
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 67 LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126
L + LT + FS+FG++ V ++KDR T KS+G FI +V DA A +A+ GK L
Sbjct: 2 LSWGLTEGIVQEAFSSFGEVREVRIVKDRETGKSKGYGFITYVSEADAQDALQAMDGKNL 61
Query: 127 NGRTVNASIAA 137
NGR + + AA
Sbjct: 62 NGREIRVNFAA 72
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
L P S V++ L T DLH L FG+I+ V ++KD+ T++++G AF+ F A
Sbjct: 104 LPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGA 163
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
A +H K GRT+ S++
Sbjct: 164 QRAIEDLHDKEHKGRTLRCSLS 185
>gi|345561947|gb|EGX45019.1| hypothetical protein AOL_s00173g120 [Arthrobotrys oligospora ATCC
24927]
Length = 732
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 31 NPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVT 90
+P + SS +G K + + + TV+V +L+Y+ T L FS + T
Sbjct: 12 HPDAQSSTGAVDNGDQKPAPDAD--ISGQRTVFVRSLNYSTTTDSLSAHFSFIAPLKHAT 69
Query: 91 VLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
V+ D AT+ SRG F+ F DA+ A + +GKV GR + IA
Sbjct: 70 VVIDPATKASRGFGFVTFTDPADAVKAVQEFNGKVFEGRHIKVEIA 115
>gi|195435065|ref|XP_002065522.1| GK14626 [Drosophila willistoni]
gi|194161607|gb|EDW76508.1| GK14626 [Drosophila willistoni]
Length = 203
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 26 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 85
Query: 121 IHGKVLNGRTVNASIAADNGRASS 144
+ G++L+GR + +A GR SS
Sbjct: 86 MDGRMLDGRELRVQMAR-YGRPSS 108
>gi|221220242|gb|ACM08782.1| Splicing factor, arginine/serine-rich 7 [Salmo salar]
Length = 260
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L F+ +G + V V R G AF+++ DA A + +
Sbjct: 17 VYVGDLGNGAAKGELERAFNYYGPLRSVWV-----ARNPPGFAFVEYEDPRDAEDATKGM 71
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYECPR 172
GKVL G + ++ R S + +R + RCY+CG+ GH +Y+C R
Sbjct: 72 DGKVLCGARIRVELSTGMSRKSRHDRPSRRHFDPNDRCYQCGENGHYAYDCYR 124
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++T+S L + F+ FG +A V+ DR T +S+G F++ A +A +
Sbjct: 5 IYVGNLPYSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITGL 64
Query: 122 HGKVLNGRTVNASIA--ADNGRASSFIKKRVYKDK 154
HG ++GR++ ++A + GR+S + Y K
Sbjct: 65 HGMSVDGRSIVVNLARPREEGRSSGGYSPQGYAGK 99
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
L P S V++ L T DLH L FG+I+ V ++KD+ T++++G AF+ F A
Sbjct: 104 LPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGA 163
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
A +H K GRT+ S++
Sbjct: 164 QRAIEDLHDKEHKGRTLRCSLS 185
>gi|307106841|gb|EFN55086.1| hypothetical protein CHLNCDRAFT_24218 [Chlorella variabilis]
Length = 91
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+++V VSNL +T DL LF FG I R+ V KDR T +SRG AFI F+ DAL A
Sbjct: 7 ENSVRVSNLSEDVTEDDLADLFGPFGPIQRIFVAKDRETGESRGFAFINFIHREDALRAI 66
Query: 119 RAIHGKVLNGRTVNASIAA 137
+ G + ++ S+AA
Sbjct: 67 SKLDGFGYDNLILSVSMAA 85
>gi|223039621|ref|ZP_03609908.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
gi|222879192|gb|EEF14286.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
Length = 81
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+YV NL Y +T ++L F+ FG++ R ++KDR T +S+G F++ DAL A A
Sbjct: 2 NIYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEMENDADALKAIEA 61
Query: 121 IHGKVLNGRTV 131
++ K + GR +
Sbjct: 62 LNNKEVGGRAL 72
>gi|426201409|gb|EKV51332.1| hypothetical protein AGABI2DRAFT_189584 [Agaricus bisporus var.
bisporus H97]
Length = 563
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
G AP + +YV +L + LT SD+ +F FG++ V + +D T +S+G AF+Q+ +
Sbjct: 330 GVSAPHGAILYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYKRAE 389
Query: 113 DALSAARAIHGKVLNGRTVNASIAADNG 140
DA A + + G L GRT+ + + G
Sbjct: 390 DARMALQQMEGFELAGRTLRVNTVHEKG 417
>gi|291049789|ref|NP_001166928.1| RNA binding motif protein [Monodelphis domestica]
gi|284080635|gb|ADB77891.1| RNA binding motif protein [Monodelphis domestica]
Length = 392
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKGLEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+++ A
Sbjct: 70 NGKSLDGKSIKVEQA 84
>gi|431930897|ref|YP_007243943.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
gi|431829200|gb|AGA90313.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
Length = 90
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + ++DL FS FG++++VTV+ DR T +S+G F++ A +A + +
Sbjct: 3 IYVGNLPYNVKDADLRETFSRFGEVSQVTVIMDRLTGESKGFGFVEMSSNSQADAAIKGL 62
Query: 122 HGKVLNGRTVNASIA 136
+G LNGR + + A
Sbjct: 63 NGTDLNGRNITVNQA 77
>gi|148235865|ref|NP_001079794.1| cold-inducible RNA-binding protein B [Xenopus laevis]
gi|82247034|sp|Q9DED4.1|CIRBB_XENLA RecName: Full=Cold-inducible RNA-binding protein B; AltName:
Full=Cold-inducible RNA-binding protein 2; Short=xCIRP2;
AltName: Full=Glycine-rich RNA-binding protein CIRP-B
gi|11761319|dbj|BAB19129.1| cold-inducible RNA binding protein 2 [Xenopus laevis]
gi|32450232|gb|AAH54250.1| Xcirp2 protein [Xenopus laevis]
Length = 166
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L +FS +G+I+ V V+KDR T++SRG F+ F DA A A+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 67 NGKAVDGRQIRVDQAG 82
>gi|297710828|ref|XP_002832064.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Pongo
abelii]
Length = 1051
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G+I +V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGRIIKVFLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+++ + A
Sbjct: 70 NGKCLDGKSIKVAQA 84
>gi|148237346|ref|NP_001084981.1| RNA-binding motif protein, X chromosome [Xenopus laevis]
gi|82236857|sp|Q6IRQ4.1|RBMX_XENLA RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G
gi|47682580|gb|AAH70649.1| MGC82187 protein [Xenopus laevis]
Length = 370
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G++ V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKALDGKPIKVEQA 84
>gi|409083550|gb|EKM83907.1| hypothetical protein AGABI1DRAFT_110515 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 563
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
G AP + +YV +L + LT SD+ +F FG++ V + +D T +S+G AF+Q+ +
Sbjct: 330 GVSAPHGAILYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYKRAE 389
Query: 113 DALSAARAIHGKVLNGRTVNASIAADNG 140
DA A + + G L GRT+ + + G
Sbjct: 390 DARMALQQMEGFELAGRTLRVNTVHEKG 417
>gi|320168309|gb|EFW45208.1| RNA binding domain-containing protein [Capsaspora owczarzaki ATCC
30864]
Length = 1179
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 49 SKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
++GS +A S ++V NL Y T DL LFS FG++A V + D+ T+K G AF+ F
Sbjct: 597 AEGSVSIAES-GRLFVRNLPYTCTEDDLIALFSKFGQLAEVHMPIDKETKKPTGFAFVLF 655
Query: 109 VQIPDALSAARAIHGKVLNGRTVNASIAADNG 140
+ A++A RA+ G GR ++ A N
Sbjct: 656 LMPEHAVTAFRALDGSTFQGRLLHLLPAKANA 687
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P + + V N+ + T +L +FS FG++ V L + + RG AFI+F+ +A
Sbjct: 1060 PESTKLIVRNVPFEATRKELFDVFSPFGQLKSVR-LPQKPGGQHRGFAFIEFLTKEEAKK 1118
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
A ++ GR + AA++ +K + KS
Sbjct: 1119 AFESLKATHFYGRHLVLEWAAEDASVEQMREKTAARFKS 1157
>gi|326519426|dbj|BAJ96712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 992
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S STV+VSNL Y +SDL T+FS G + R ++ + + S+G F+QF + DA A
Sbjct: 43 SPSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETSKGFGFVQFATVQDAERA 102
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
+ +G + GR + +A RA +K+R+ K +S
Sbjct: 103 IQQKNGFAVAGRKIRVKLAIQ--RAP--LKERLQKKES 136
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V V NL + +T ++ +FS + V++ + KS+G AF+ F + DA +A + +
Sbjct: 299 VIVRNLPFKVTIKEIMDIFSCEAFVWDVSIPQKSDDGKSKGFAFLSFTRKQDAENAIKNV 358
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDE 163
+GKV+ RTV A + K VY ++ GDE
Sbjct: 359 NGKVIAKRTVAVDWA---------VPKNVYAVAAKSDAKGDE 391
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + ++N ++ FS FGK+ + + T++ RG F++F
Sbjct: 557 TIFISNLPFDISNEEVTERFSVFGKVQSFFPVLHKLTKRPRGTGFLKF 604
>gi|302697041|ref|XP_003038199.1| hypothetical protein SCHCODRAFT_80477 [Schizophyllum commune H4-8]
gi|300111896|gb|EFJ03297.1| hypothetical protein SCHCODRAFT_80477 [Schizophyllum commune H4-8]
Length = 344
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++YV N+DY+ T D+ F G I RVT+L D+ T +G A+++F + P+ + AA
Sbjct: 51 SIYVGNVDYSATPEDIQAHFQACGTINRVTILCDKFTGHPKGYAYVEFAE-PEHVDAAVT 109
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIK 147
+ + GR + A AAD A+ I+
Sbjct: 110 MDNSLFKGRLIKAVTAADTAGATVAIR 136
>gi|284022113|sp|Q925G0.2|RBM3_RAT RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
Length = 155
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
RA++G+ L+GR + A + R +
Sbjct: 61 SDVMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|395860828|ref|XP_003802706.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Otolemur
garnettii]
Length = 391
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AFI F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFITFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|229367642|gb|ACQ58801.1| Cold-inducible RNA-binding protein [Anoplopoma fimbria]
Length = 179
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L + L F +G I +V V++DR T KSRG F+++ DA A +
Sbjct: 7 LFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDRETEKSRGFGFVKYDNAEDAKDAMDGM 66
Query: 122 HGKVLNGRTVNASIAADNGRA 142
+G+ L+GRT+ A GR+
Sbjct: 67 NGQTLDGRTIRVDEAGKGGRS 87
>gi|321464387|gb|EFX75395.1| sex-lethal protein variant 2 [Daphnia pulex]
Length = 297
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +YV+NL +T +L +FS G I ++ +LKD+ T RGVAF++F + +AL+A
Sbjct: 112 ETNLYVTNLPRDVTEDELTNIFSAHGNIVQMNLLKDKITGMPRGVAFVRFDKREEALAAI 171
Query: 119 RAIHGKVLNGRT--VNASIAADNGR 141
++G + +GRT ++ IA ++G+
Sbjct: 172 EHLNGTIPHGRTNPISVKIAEEHGK 196
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S++ + ++ L LT S+L +F T G + +++D T S G F+ + + DA+ A
Sbjct: 25 SRTNLIINYLPQNLTESELFKMFVTIGTVTNCKIMRDFRTGYSYGFGFVNYQKADDAIRA 84
Query: 118 ARAIHGKVLNGRTVNASIA 136
+ ++G + + + S A
Sbjct: 85 IQTLNGLQIQNKRIKVSYA 103
>gi|270012981|gb|EFA09429.1| hypothetical protein TcasGA2_TC010640 [Tribolium castaneum]
Length = 202
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S VYV +L + + +L F +G + V V R G AF++F DA A
Sbjct: 6 SDCKVYVGDLGNSASKQELEDAFRYYGPLRNVWV-----ARNPPGFAFVEFEDARDAEDA 60
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSF--------IKKRVYKDKSRCYECGDEGHLSYE 169
R + G+ + GR A + NG++ S + R + RCYECGD GH + +
Sbjct: 61 IRGLDGRTICGR--RARVEMSNGKSGSGRYRGPPPRSRGRPFHPDDRCYECGDRGHYARD 118
Query: 170 C 170
C
Sbjct: 119 C 119
>gi|221219336|gb|ACM08329.1| Splicing factor, arginine/serine-rich 7 [Salmo salar]
Length = 266
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L +L F+ +G + V V R G AF+++ DA A + +
Sbjct: 17 VYVGDLGNGAAKGELERAFNYYGPLRSVWV-----ARNPPGFAFVEYEDPRDAEDATKGM 71
Query: 122 HGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYECPR 172
GKVL G + ++ R S + +R + RCY+CG+ GH +Y+C R
Sbjct: 72 DGKVLCGARIRVELSTGMSRKSRHDRPSRRHFDPNDRCYQCGENGHYAYDCYR 124
>gi|432843262|ref|XP_004065594.1| PREDICTED: THO complex subunit 4-A-like [Oryzias latipes]
Length = 251
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 42 SSGPHKKS-KGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
S GP +S + S S + +SNLD+ +++SD+ LF FG + + ++ DR+ R S
Sbjct: 81 SRGPRAQSPEADDSFGGSSSKLLISNLDFGVSDSDIKDLFEEFGTLKKASIHYDRSGR-S 139
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGRTVN-ASIAADNGRASS 144
+GVA + FV DAL A + +G L+G + +A+D G SS
Sbjct: 140 KGVAEVHFVNKADALKAMKHYNGVPLDGHPMKIQQVASDVGTQSS 184
>gi|407940456|ref|YP_006856097.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407898250|gb|AFU47459.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 116
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +YV NL Y++T++ L + F+ FG ++ V+ DR T +S+G F++ A +A R
Sbjct: 3 SKIYVGNLPYSVTDATLESNFAEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAIR 62
Query: 120 AIHGKVLNGRTVNASIA 136
A+HG ++GR++ ++A
Sbjct: 63 ALHGMSVDGRSIVVNLA 79
>gi|255322500|ref|ZP_05363645.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
gi|255300408|gb|EET79680.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
Length = 81
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+YV NL Y +T ++L F+ FG++ R ++KDR T +S+G F++ DAL A A
Sbjct: 2 NIYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEIENDADALKAIEA 61
Query: 121 IHGKVLNGRTV 131
++ K + GR +
Sbjct: 62 LNNKEVGGRAL 72
>gi|90075670|dbj|BAE87515.1| unnamed protein product [Macaca fascicularis]
Length = 135
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|449267951|gb|EMC78842.1| Heterogeneous nuclear ribonucleoprotein G [Columba livia]
Length = 385
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAQDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|357124980|ref|XP_003564174.1| PREDICTED: serine/arginine-rich splicing factor 7-like
[Brachypodium distachyon]
Length = 185
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VYV NLD A+T +L F FG + V V RK G AFI F DA A R
Sbjct: 2 ARVYVGNLDPAVTARELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAQDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
I GK NG V S N + + R + +CYECG+ GH + EC
Sbjct: 57 DIDGK--NGWRVELS---RNASSGRGGRDRSGGSEMKCYECGESGHFAREC 102
>gi|224081877|ref|XP_002306512.1| predicted protein [Populus trichocarpa]
gi|222855961|gb|EEE93508.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
+G P +YV NL + +T L LF FG + V + D T + +G F+QF Q+
Sbjct: 89 AGPFGPVDRKLYVGNLHFNMTEMQLRQLFEPFGTVELVQLPLDLETGQCKGFGFVQFTQL 148
Query: 112 PDALSAARAIHGKV-LNGRTVNASIAADNG 140
+A +A A++GK+ + GRT+ S ++G
Sbjct: 149 ENAKAAQSALNGKLEIAGRTIKVSSVTEHG 178
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 71 LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA--ARAIHGKVLNG 128
+T D++ FS GK+ V ++ DR +R+S+GV +++F DA+S A A+ G++L G
Sbjct: 5 VTERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFY---DAMSVPMAIALSGQLLFG 61
Query: 129 RTV 131
+ V
Sbjct: 62 QPV 64
>gi|126136038|ref|XP_001384543.1| hypothetical protein PICST_45495 [Scheffersomyces stipitis CBS
6054]
gi|126091741|gb|ABN66514.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 155
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 37 SADVTSSGPHKKSKGSGGLAPSKS----TVYVSNLDYALTNSDLHTLFSTFGKIARVTVL 92
+ +VT S P + + + LA + ++YV N+DY T L F G I RVT+L
Sbjct: 7 TTEVTRSAPETEEERAARLAKQEEIDGRSIYVGNVDYQSTPEQLEEFFHVVGVIERVTIL 66
Query: 93 KDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
DR + +G A+++F + A +HGK GR + S N
Sbjct: 67 FDRYSGLPKGYAYVEFEKTESVERAIEDLHGKEFRGREIRVSAKRTN 113
>gi|167375953|ref|XP_001733793.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165904968|gb|EDR30090.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 308
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+V+V N+ Y +D++ F++ G + + V+ ++ T KSRG ++ FV + A +
Sbjct: 148 SVFVKNIPYGWATNDMYQYFASSGPV-KTRVITNKETGKSRGFGYLDFVDLEAAKKFVQE 206
Query: 121 IHGKVLNGRTVNASIA---------ADNGRASSFI------KKRVYKDK----SRCYECG 161
G+ ++GR + +A D G+ +F K+ +K K + C+ CG
Sbjct: 207 HQGEEVDGRPLFLDLADGKKGGDKDNDGGKFGAFGSSNKRGKQHTFKGKQGGDNVCFNCG 266
Query: 162 DEGHLSYECP 171
GH+S ECP
Sbjct: 267 KPGHMSRECP 276
>gi|74006873|ref|XP_863171.1| PREDICTED: uncharacterized protein LOC609457 isoform 2 [Canis lupus
familiaris]
Length = 162
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L F +FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|384497441|gb|EIE87932.1| hypothetical protein RO3G_12643 [Rhizopus delemar RA 99-880]
Length = 291
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 35 SSSADVTSSGPHKKSKGSGGLAPS-------KSTVYVSNLDYALTNSDLHTLFSTFGKIA 87
SSS + PH ++KG+ + + +T+ V+NL +T+SD++ LF+ FG IA
Sbjct: 180 SSSGPSKYTPPHLRNKGTPSVGETMREKRDDSATLRVTNLSEDVTDSDIYDLFNRFGNIA 239
Query: 88 RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
RV + +DR T +G AF+ F DA A +AI+G
Sbjct: 240 RVYLARDRETNLCKGFAFVSFNSREDADRAQQAING 275
>gi|66809481|ref|XP_638463.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996868|sp|Q54PB2.1|MRD1_DICDI RecName: Full=Multiple RNA-binding domain-containing protein 1;
AltName: Full=RNA-binding motif protein 19 homolog;
AltName: Full=RNA-binding protein 19 homolog
gi|60467060|gb|EAL65101.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 895
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y+ DL +FS FGKI+ + + D ++KS+G+AFI ++ +A+ A +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 122 HGKVLNGRTVNA 133
GKV GR ++
Sbjct: 423 DGKVFQGRLIHV 434
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 47 KKSKGSGGLAPSK--STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
K+S S G P+K S + + NL + T ++ LF+ +G+I V + K + RG
Sbjct: 780 KQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPK-KPNGGHRGFG 838
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTV 131
F++F+ +A +A A+ GR +
Sbjct: 839 FVEFLTEEEAKNAMEALGNSHFYGRHL 865
>gi|224097264|ref|XP_002190045.1| PREDICTED: RNA-binding motif protein, X chromosome isoform 1
[Taeniopygia guttata]
Length = 377
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|110597824|ref|ZP_01386107.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
gi|110340549|gb|EAT59032.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
Length = 90
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NLDY++T +DL F FG+++ +V+ D+ T +S+G F++ +A SA +
Sbjct: 3 IYIGNLDYSVTEADLRETFGEFGEVSSASVINDKFTGRSKGFGFVEMANDAEAASAIADL 62
Query: 122 HGKVLNGRTV 131
+ LNGRT+
Sbjct: 63 NDSDLNGRTI 72
>gi|326515262|dbj|BAK03544.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520728|dbj|BAJ92727.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 169
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKI-ARVTVLKDRATRKS--RGVAFIQFVQIPDA 114
S S +YV NLD+ ++ SD+ +FS +GKI A +L R ++ RG AF+Q+ +A
Sbjct: 13 SASRLYVGNLDFRISESDVIKMFSPYGKIIAEDFLLHTRGPKRGEPRGYAFVQYTTKEEA 72
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDK 154
A ++GK++ GR V +A++ G S +R KDK
Sbjct: 73 QLAKEKMNGKLVCGRPVVVHLASEKGSLDSGNSQRALKDK 112
>gi|403256025|ref|XP_003920702.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Saimiri
boliviensis boliviensis]
Length = 391
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|449498359|ref|XP_004175818.1| PREDICTED: RNA-binding motif protein, X chromosome isoform 2
[Taeniopygia guttata]
Length = 385
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|119331082|ref|NP_001073196.1| heterogeneous nuclear ribonucleoprotein G [Gallus gallus]
gi|53130710|emb|CAG31684.1| hypothetical protein RCJMB04_9j22 [Gallus gallus]
gi|169139272|gb|ACA48585.1| RNA binding motif protein, X-linked [Gallus gallus]
Length = 385
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|326924314|ref|XP_003208374.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Meleagris gallopavo]
Length = 385
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|7439974|pir||JC6571 cold-inducible RNA-binding protein homolog - clawed frog
gi|3341887|dbj|BAA31861.1| cold-inducible RNA binding protein [Xenopus laevis]
Length = 163
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L F+ +G+I+ V V+KDR T++SRG F+ F + DA A A+
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 67 NGKSVDGRQIRVDQAG 82
>gi|423196273|ref|ZP_17182856.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
gi|404632497|gb|EKB29102.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
Length = 92
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y +T +L T+FS FG++ +V ++ DR T +S+G FI+ +A A +
Sbjct: 3 IYVGNLSYRMTADELKTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGL 62
Query: 122 HGKVLNGRTVNASIA 136
HG + GRT+ + A
Sbjct: 63 HGTEIGGRTITVNQA 77
>gi|225713126|gb|ACO12409.1| Sex-lethal homolog [Lepeophtheirus salmonis]
gi|290561258|gb|ADD38031.1| Sex-lethal homolog [Lepeophtheirus salmonis]
Length = 255
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +Y++NL ++T +H++FST+GKI + +LKD T K +GVAF+++ + +A A
Sbjct: 116 SNLYIANLGCSVTEEAIHSMFSTYGKIVTLNLLKDPITGKPKGVAFVRYSKQSEAKDAIT 175
Query: 120 AIHGKVLNG--RTVNASIAADNGR 141
A++G ++ G + + +A ++G+
Sbjct: 176 ALNGTMMTGNDKPMLVKVAEEHGK 199
>gi|195344125|ref|XP_002038639.1| GM10513 [Drosophila sechellia]
gi|194133660|gb|EDW55176.1| GM10513 [Drosophila sechellia]
Length = 266
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP + + G GG P++ + V NLDY ++N+D+ LF+ FG I + V DR+ R S G
Sbjct: 96 GPKRGAAG-GGSGPTR--LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGR-SLGT 151
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
A + F + DAL A + HG L+GR + +A +
Sbjct: 152 ADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSD 187
>gi|3256007|emb|CAA80599.1| hnRNP G protein [Homo sapiens]
Length = 391
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|195568864|ref|XP_002102432.1| GD19510 [Drosophila simulans]
gi|194198359|gb|EDX11935.1| GD19510 [Drosophila simulans]
Length = 273
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP + + G GG P++ + V NLDY ++N+D+ LF+ FG I + V DR+ R S G
Sbjct: 96 GPKRGAAG-GGSGPTR--LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGR-SLGT 151
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
A + F + DAL A + HG L+GR + +A
Sbjct: 152 ADVIFERRADALKAIKQYHGVPLDGRPMTIQLA 184
>gi|393218616|gb|EJD04104.1| splicing factor, CC1-like protein [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 51 GSGGLAPSKS----TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFI 106
GS L P S T+YV +L + LT SD+ +F FG++ V + KD AT +S+G AFI
Sbjct: 225 GSINLPPGASGRGATLYVGSLHFNLTESDIKQVFEPFGELDFVDLHKDSATGRSKGYAFI 284
Query: 107 QFVQIPDALSAARAIHGKVLNGRTVNASIAADNGR 141
+ + DA A + G L GRT+ + + G+
Sbjct: 285 HYKRAEDAKMALEQMEGFELAGRTLRVNTVHEKGQ 319
>gi|117619969|ref|YP_856326.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561376|gb|ABK38324.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 95
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y +T +L T+FS FG++ +V ++ DR T +S+G FI+ +A A +
Sbjct: 6 IYVGNLSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGL 65
Query: 122 HGKVLNGRTVNASIA 136
HG + GRT+ + A
Sbjct: 66 HGTEIGGRTITVNQA 80
>gi|355715855|gb|AES05424.1| RNA binding motif protein, X-linked [Mustela putorius furo]
Length = 392
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 11 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 70
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 71 NGKSLDGKAIKVEQA 85
>gi|327279532|ref|XP_003224510.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Anolis
carolinensis]
Length = 152
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KD+ T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ ++GR + A
Sbjct: 61 SDAMRAMNGESVDGRQIRVDHAG 83
>gi|346716298|ref|NP_001231025.1| heterogeneous nuclear ribonucleoprotein G [Sus scrofa]
Length = 390
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|6755296|ref|NP_035382.1| RNA-binding motif protein, X chromosome [Mus musculus]
gi|262231769|ref|NP_001160095.1| RNA-binding motif protein, X chromosome [Mus musculus]
gi|81917893|sp|Q9WV02.1|RBMX_MOUSE RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|5579011|emb|CAB51362.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
gi|13277600|gb|AAH03710.1| RNA binding motif protein, X chromosome [Mus musculus]
gi|74149379|dbj|BAE22448.1| unnamed protein product [Mus musculus]
gi|148710228|gb|EDL42174.1| RNA binding motif protein, X chromosome, isoform CRA_e [Mus
musculus]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|9964085|gb|AAG09816.1|AF278702_1 cold-inducible RNA binding protein XCIRP-1 [Xenopus laevis]
Length = 166
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L F+ +G+I+ V V+KDR T++SRG F+ F + DA A A+
Sbjct: 7 LFIGGLNFETNEGCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 67 NGKSVDGRQIRVDQAG 82
>gi|56699409|ref|NP_002130.2| RNA-binding motif protein, X chromosome isoform 1 [Homo sapiens]
gi|206725512|ref|NP_001128678.1| RNA-binding motif protein, X chromosome [Pan troglodytes]
gi|74008547|ref|XP_866434.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G isoform 6
[Canis lupus familiaris]
gi|149755726|ref|XP_001489601.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G [Equus
caballus]
gi|397482297|ref|XP_003812367.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Pan
paniscus]
gi|410989483|ref|XP_004000991.1| PREDICTED: RNA-binding motif protein, X chromosome [Felis catus]
gi|23503093|sp|P38159.3|RBMX_HUMAN RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Glycoprotein p43; AltName: Full=Heterogeneous
nuclear ribonucleoprotein G; Short=hnRNP G; Contains:
RecName: Full=RNA-binding motif protein, X chromosome,
N-terminally processed
gi|160395526|sp|A5A6M3.1|RBMX_PANTR RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|13938569|gb|AAH07435.1| RNA binding motif protein, X-linked [Homo sapiens]
gi|14279350|gb|AAK58567.1| RBMX [Homo sapiens]
gi|16306856|gb|AAH06550.1| RNA binding motif protein, X-linked [Homo sapiens]
gi|39545947|gb|AAR28036.1| heterogeneous nuclear ribonucleoprotein G [Homo sapiens]
gi|119608859|gb|EAW88453.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608860|gb|EAW88454.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608861|gb|EAW88455.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608863|gb|EAW88457.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|123993071|gb|ABM84137.1| RNA binding motif protein, X-linked [synthetic construct]
gi|124000061|gb|ABM87539.1| RNA binding motif protein, X-linked [synthetic construct]
gi|146741480|dbj|BAF62396.1| RNA binding motif protein, X-linked [Pan troglodytes verus]
gi|410266422|gb|JAA21177.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266426|gb|JAA21179.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266428|gb|JAA21180.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266430|gb|JAA21181.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266432|gb|JAA21182.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266434|gb|JAA21183.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266436|gb|JAA21184.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348962|gb|JAA41085.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348964|gb|JAA41086.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348966|gb|JAA41087.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348968|gb|JAA41088.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348970|gb|JAA41089.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348972|gb|JAA41090.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348974|gb|JAA41091.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348976|gb|JAA41092.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|355757746|gb|EHH61271.1| hypothetical protein EGM_19240 [Macaca fascicularis]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|321458047|gb|EFX69122.1| hypothetical protein DAPPUDRAFT_62581 [Daphnia pulex]
Length = 109
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y T DL +F +G + V + KDR +R+SRG AF++F D A
Sbjct: 13 TSLKVDNLTYRTTCEDLRRVFEKYGDVGDVYIPKDRFSRESRGFAFVRFYDRRDGEDAMH 72
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G++++GR + +A
Sbjct: 73 AMDGRMMDGRELRVQLA 89
>gi|291401898|ref|XP_002717345.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
gi|291408303|ref|XP_002720376.1| PREDICTED: RNA binding motif protein, X-linked [Oryctolagus
cuniculus]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|410227798|gb|JAA11118.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227802|gb|JAA11120.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227804|gb|JAA11121.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227806|gb|JAA11122.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227808|gb|JAA11123.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227810|gb|JAA11124.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227812|gb|JAA11125.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|345306629|ref|XP_001510789.2| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Ornithorhynchus anatinus]
Length = 420
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 36 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 95
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 96 NGKSLDGKAIKVEQA 110
>gi|344280641|ref|XP_003412091.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked-like-2-like [Loxodonta africana]
Length = 395
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G I V ++KDR T KSRG AFI F DA +AAR +
Sbjct: 10 LFIGGLNPETDEKALEAAFGKYGSIVEVLLVKDRETTKSRGFAFITFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+T+ + A
Sbjct: 70 NGKSLDGKTIKVAQA 84
>gi|301769089|ref|XP_002919961.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Ailuropoda melanoleuca]
gi|281352732|gb|EFB28316.1| hypothetical protein PANDA_008640 [Ailuropoda melanoleuca]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|390474384|ref|XP_002757703.2| PREDICTED: RNA-binding motif protein, X chromosome-like, partial
[Callithrix jacchus]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|344297709|ref|XP_003420539.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G [Loxodonta
africana]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|297811089|ref|XP_002873428.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319265|gb|EFH49687.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 520
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG P +YV NL + +T L +F FG + V + D T + +G FIQF Q+
Sbjct: 251 GGTGPVDRKLYVGNLHFNMTELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFAQLE 310
Query: 113 DALSAARAIHGKV-LNGRTVNASIAADN 139
+ +A +++GK+ + GRT+ S +D+
Sbjct: 311 HSKAAQISLNGKLEIAGRTIKVSSVSDH 338
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 46 HKKSKGSGGLAPSKS--TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
HK K P + TV+ + T D++ FS GK+ V ++ DR +R+S+GV
Sbjct: 146 HKDKKDEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 205
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTV 131
+I+F + ++ A A+ G+ G+ V
Sbjct: 206 GYIEFYDVM-SVPMAIALSGQPFLGQPV 232
>gi|426257491|ref|XP_004022360.1| PREDICTED: RNA-binding motif protein, X chromosome [Ovis aries]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|344250008|gb|EGW06112.1| Putative RNA-binding protein 3 [Cricetulus griseus]
Length = 169
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R S
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSARGS 89
>gi|148231554|ref|NP_001080069.1| cold-inducible RNA-binding protein A [Xenopus laevis]
gi|284018072|sp|O93235.2|CIRBA_XENLA RecName: Full=Cold-inducible RNA-binding protein A; AltName:
Full=Cold-inducible RNA-binding protein; Short=XCIRP;
AltName: Full=Cold-inducible RNA-binding protein 1;
Short=XCIRP-1; AltName: Full=Glycine-rich RNA-binding
protein CIRP-A
gi|27735413|gb|AAH41204.1| Cirbp-prov protein [Xenopus laevis]
Length = 166
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L F+ +G+I+ V V+KDR T++SRG F+ F + DA A A+
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 67 NGKSVDGRQIRVDQAG 82
>gi|285012962|ref|NP_001165510.1| heterogeneous nuclear ribonucleoprotein G [Bos taurus]
gi|348557903|ref|XP_003464758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like [Cavia
porcellus]
gi|284080621|gb|ADB77884.1| Rbmx [Bos taurus]
gi|296471213|tpg|DAA13328.1| TPA: RNA binding motif protein, X-linked isoform 1 [Bos taurus]
gi|440895247|gb|ELR47495.1| Heterogeneous nuclear ribonucleoprotein G [Bos grunniens mutus]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|148695099|gb|EDL27046.1| mCG129611 [Mus musculus]
Length = 172
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + + V L++ L FS+FG I+ V V+KDR T++S G FI F A
Sbjct: 20 MSSEEGKLVVGGLNFNTHEQALENYFSSFGPISEVVVVKDRETQRSWGFGFITFTNPEHA 79
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R S
Sbjct: 80 SDAMRAMNGESLDGRQIRVDHAGKSARGS 108
>gi|402911572|ref|XP_003918396.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Papio
anubis]
gi|75076694|sp|Q4R7F0.1|RBMX_MACFA RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|67969238|dbj|BAE00972.1| unnamed protein product [Macaca fascicularis]
gi|380813174|gb|AFE78461.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813176|gb|AFE78462.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813178|gb|AFE78463.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813180|gb|AFE78464.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813182|gb|AFE78465.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383411873|gb|AFH29150.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418689|gb|AFH32558.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418691|gb|AFH32559.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418693|gb|AFH32560.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418695|gb|AFH32561.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418697|gb|AFH32562.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418699|gb|AFH32563.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947302|gb|AFI37256.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947304|gb|AFI37257.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947306|gb|AFI37258.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947308|gb|AFI37259.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947310|gb|AFI37260.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947312|gb|AFI37261.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947314|gb|AFI37262.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
Length = 391
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|410308290|gb|JAA32745.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308292|gb|JAA32746.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308294|gb|JAA32747.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308296|gb|JAA32748.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308298|gb|JAA32749.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308300|gb|JAA32750.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308302|gb|JAA32751.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308304|gb|JAA32752.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|71043834|ref|NP_001020834.1| RNA-binding motif protein, X chromosome [Rattus norvegicus]
gi|81907907|sp|Q4V898.1|RBMX_RAT RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; AltName: Full=RNA-binding motif protein,
X chromosome retrogene; AltName: Full=RNA-binding motif
protein, X chromosome retrogene-like; Contains: RecName:
Full=RNA-binding motif protein, X chromosome,
N-terminally processed
gi|66910650|gb|AAH97479.1| RNA binding motif protein, X-linked [Rattus norvegicus]
gi|149015799|gb|EDL75123.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_b [Rattus norvegicus]
Length = 390
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|114052629|ref|NP_001040075.1| RNA-binding motif protein, X chromosome [Bos taurus]
gi|119907483|ref|XP_001250252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like [Bos
taurus]
gi|109892459|sp|Q29RT0.1|RBMX_BOVIN RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|88954147|gb|AAI14041.1| Testes-specific heterogenous nuclear ribonucleoprotein G-T [Bos
taurus]
gi|296480068|tpg|DAA22183.1| TPA: RNA binding motif protein, X-linked [Bos taurus]
Length = 396
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I+ V ++KDR T KSRG AFI F DA +A R +
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|410340767|gb|JAA39330.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340769|gb|JAA39331.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340771|gb|JAA39332.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340773|gb|JAA39333.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340775|gb|JAA39334.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340777|gb|JAA39335.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F IP+
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITF-PIPEH 59
Query: 115 LSAA-RAIHGKVLNGRTVNASIAADNGRAS 143
S A RA++G+ L+GR + A + R +
Sbjct: 60 ASVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|407416749|gb|EKF37788.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 212
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
H+KS GS +A ++++V +D T +L FS+ G I R+T+L+D+ T + +G A+
Sbjct: 53 HRKSTGS--VATKNTSIFVGGMDPRTTEGELRVFFSSCGTIKRLTMLRDKFTGQLKGNAY 110
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADN------GRASS 144
I+F + P+ +A G+ L+G+ +N ++ DN GR SS
Sbjct: 111 IEF-EAPEQAAAGILKDGQSLHGKPLNVAMKRDNIPAFQRGRGSS 154
>gi|114050755|ref|NP_001040152.1| Sr protein [Bombyx mori]
gi|87248221|gb|ABD36163.1| Sr protein [Bombyx mori]
Length = 154
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G++ + + +DR TR+SRG AF++F + DA A + G
Sbjct: 18 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 77
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR SS
Sbjct: 78 RMLDGRELRVQMAR-YGRPSS 97
>gi|242092260|ref|XP_002436620.1| hypothetical protein SORBIDRAFT_10g005960 [Sorghum bicolor]
gi|241914843|gb|EER87987.1| hypothetical protein SORBIDRAFT_10g005960 [Sorghum bicolor]
gi|448878284|gb|AGE46105.1| arginine/serine-rich splicing factor RSZ21 transcript I [Sorghum
bicolor]
gi|448878288|gb|AGE46107.1| arginine/serine-rich splicing factor RSZ21 transcript III [Sorghum
bicolor]
Length = 186
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NLD +T +L F TFG + V V RK G AFI F DA A R +
Sbjct: 4 LYVGNLDPRVTARELEDEFRTFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S N + + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELS---RNASSGRGGRDRYGGSESKCYECGETGHFAREC 102
>gi|291400889|ref|XP_002716811.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
Length = 391
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|110762781|ref|XP_393352.2| PREDICTED: serine/arginine-rich splicing factor 2-like [Apis
mellifera]
gi|340724784|ref|XP_003400761.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Bombus
terrestris]
gi|350398198|ref|XP_003485116.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Bombus
impatiens]
gi|380022396|ref|XP_003695032.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Apis
florea]
gi|383865619|ref|XP_003708270.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Megachile
rotundata]
Length = 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 15 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDA 74
Query: 121 IHGKVLNGRTVNASIAADNGRASS 144
+ G++L+GR + +A GR +S
Sbjct: 75 MDGRLLDGRELRVQMAR-YGRPTS 97
>gi|21358099|ref|NP_652612.1| SC35, isoform B [Drosophila melanogaster]
gi|320545008|ref|NP_001188794.1| SC35, isoform C [Drosophila melanogaster]
gi|386769542|ref|NP_001246005.1| SC35, isoform D [Drosophila melanogaster]
gi|7243688|gb|AAF43415.1|AF232775_1 SR family splicing factor SC35 [Drosophila melanogaster]
gi|7297948|gb|AAF53192.1| SC35, isoform B [Drosophila melanogaster]
gi|17862504|gb|AAL39729.1| LD32469p [Drosophila melanogaster]
gi|220944588|gb|ACL84837.1| SC35-PA [synthetic construct]
gi|220954528|gb|ACL89807.1| SC35-PA [synthetic construct]
gi|318068433|gb|ADV37044.1| SC35, isoform C [Drosophila melanogaster]
gi|383291463|gb|AFH03679.1| SC35, isoform D [Drosophila melanogaster]
Length = 195
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 83
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 84 MDGRMLDGRELRVQMA 99
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +YV NL Y++T+S L + FS FG + V+ DR T +S+G F++ A +A
Sbjct: 3 SKIYVGNLPYSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAIS 62
Query: 120 AIHGKVLNGRTVNASIA 136
A+HG ++GR++ ++A
Sbjct: 63 ALHGMSVDGRSIVVNLA 79
>gi|432099499|gb|ELK28647.1| Heterogeneous nuclear ribonucleoprotein G-like 1 [Myotis davidii]
Length = 535
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 179 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 238
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 239 NGKSLDGKAIKVEQA 253
>gi|343959058|dbj|BAK63384.1| heterogeneous nuclear ribonucleoprotein G [Pan troglodytes]
Length = 391
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|327286671|ref|XP_003228053.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 1
[Anolis carolinensis]
Length = 384
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|194861231|ref|XP_001969737.1| GG10262 [Drosophila erecta]
gi|190661604|gb|EDV58796.1| GG10262 [Drosophila erecta]
Length = 195
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 83
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 84 MDGRMLDGRELRVQMA 99
>gi|388505416|gb|AFK40774.1| unknown [Lotus japonicus]
Length = 181
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD ++ DL F +G + V V R+ G AF++F DAL A
Sbjct: 2 SRVYVGNLDPRVSERDLEDEFRLYGVLRSVWV-----ARRPPGYAFLEFDDKRDALDAIH 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A+ GK NG V S + G + + +CYECG+ GH + EC
Sbjct: 57 ALDGK--NGWRVELSHNSKGGGGGRGGGRGRGGEDLKCYECGEPGHFAREC 105
>gi|331241781|ref|XP_003333538.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312528|gb|EFP89119.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
AP+ ++V NL + + L + F FG + V++DR T +SRG FI F + DA
Sbjct: 4 APAGGKLFVGNLAWTTDSGSLKSAFGQFGDVIDAIVMQDRETGRSRGFGFITFKEEADAP 63
Query: 116 SAARAIHGKVLNGRTVNASIA 136
A A++G+ L+GR + + A
Sbjct: 64 GAIEALNGQELDGREIRVNYA 84
>gi|297263082|ref|XP_001089948.2| PREDICTED: putative RNA-binding protein 3 [Macaca mulatta]
Length = 135
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G L+GR + + A + R +
Sbjct: 61 SVAMRAMNGDSLDGRQIRVAHAGKSARET 89
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L Y T L FS +G IA+V V++DR T +SRG F+ F DA A A+
Sbjct: 7 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 67 NGKQVDGRMIRVDEAG 82
>gi|327286673|ref|XP_003228054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 2
[Anolis carolinensis]
Length = 374
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
Length = 166
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + +L +F +G+I+ V V+KDR T++SRG F+ F DA A A+
Sbjct: 9 LFVGGLSFDTEEQNLEQVFGKYGQISEVVVVKDRETQRSRGFGFVTFENPEDAKDAMEAM 68
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 69 NGKSVDGRQIRVDQAG 84
>gi|448878276|gb|AGE46101.1| arginine/serine-rich splicing factor RSZ28 transcript I [Sorghum
bicolor]
gi|448878278|gb|AGE46102.1| arginine/serine-rich splicing factor RSZ28 transcript II [Sorghum
bicolor]
gi|448878280|gb|AGE46103.1| arginine/serine-rich splicing factor RSZ28 transcript III [Sorghum
bicolor]
gi|448878282|gb|AGE46104.1| arginine/serine-rich splicing factor RSZ28 transcript IV [Sorghum
bicolor]
Length = 246
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T ++ F TFG + V V RK G AFI F DA A R +
Sbjct: 4 VYVGNLDPRVTAREIEDEFRTFGVLRSVWV-----ARKPPGFAFIDFDDRRDAQDAIREL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S +A + +CYECG+ GH + EC
Sbjct: 59 DGK--NGWKVELST-----KAGGGRGRDRNGSDMKCYECGESGHFAREC 100
>gi|355704773|gb|EHH30698.1| RNA-binding motif protein 3 [Macaca mulatta]
Length = 157
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + + + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVAHVGKSARET 89
>gi|313239216|emb|CBY14172.1| unnamed protein product [Oikopleura dioica]
Length = 584
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K TV+VS LD T +L F G I RVT+L+DR TR S+G A+IQF + D A
Sbjct: 461 KRTVFVSGLDVITTEPELKEHFQVCGTIVRVTILRDRFTRMSKGCAYIQFATL-DQRQTA 519
Query: 119 RAIHGKVLNGRTVNAS 134
++G+T+ +
Sbjct: 520 DVFDNTEIHGKTIRVT 535
>gi|417410380|gb|JAA51664.1| Putative cyclophilin-type peptidyl-prolyl cis-trans isomerase,
partial [Desmodus rotundus]
Length = 398
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 11 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 70
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 71 NGKSLDGKAIKVEQA 85
>gi|409049562|gb|EKM59039.1| hypothetical protein PHACADRAFT_249208 [Phanerochaete carnosa
HHB-10118-sp]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 45 PHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
P +K++ G AP+K T++V L + + N+ L + F+ G+I V DR T +SRG
Sbjct: 25 PAQKARVDDGSAPTK-TIFVGMLSWNVDNAWLESEFAQCGEIVSAHVQTDRNTGRSRGFG 83
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNA--SIAADNGRASSFIKKRVYKD-----KSRC 157
F+ F P+A+ A ++GK ++GR++N S+ D + + R + D SR
Sbjct: 84 FVTFAS-PEAVDKALELNGKEIDGRSINVDKSVEKDQNQVRE-RRARTFGDAPSEPSSRL 141
Query: 158 YECGDEGHLSYECPRNQL 175
+ G+LS++ QL
Sbjct: 142 F----VGNLSFDATEEQL 155
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 54 GLAPSK--STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
G APS+ S ++V NL + T L +FS +G I V + R + + +G +++F I
Sbjct: 131 GDAPSEPSSRLFVGNLSFDATEEQLWEVFSDYGSIKSVHMPTSRDSGRPKGFGYVEFEDI 190
Query: 112 PDALSAARAIHGKVLNGRTV 131
A A ++ G+ + GR +
Sbjct: 191 ESAKKAHESLVGQEIAGRAI 210
>gi|242012315|ref|XP_002426878.1| arginine/serine-rich splicing factor, putative [Pediculus humanus
corporis]
gi|212511107|gb|EEB14140.1| arginine/serine-rich splicing factor, putative [Pediculus humanus
corporis]
Length = 192
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S VYV +L + + DL F +G + V V R G AF++F DA A
Sbjct: 9 SDCKVYVGDLGSSASKQDLEDAFGYYGPLKNVWV-----ARHPPGFAFVEFEDPRDADDA 63
Query: 118 ARAIHGKVLNGRTVNA----SIAADNGRASSFIKK-RVYKDKSRCYECGDEGHLSYEC 170
R + G+ + GR V +A GR ++ R + RCY+CG+ GH + +C
Sbjct: 64 VRGLDGRSIAGRRVRVEPSNGMARRRGRDRGVSRRGRPFHPDDRCYQCGERGHYARDC 121
>gi|357119205|ref|XP_003561336.1| PREDICTED: uncharacterized protein LOC100827239 [Brachypodium
distachyon]
Length = 314
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++V L + L F FGK+ ++ +R T + RG F+ F SA
Sbjct: 6 ESRIFVGGLSFHTDERKLEEAFRRFGKVVDAQIMLERHTNRHRGFGFVTFSDPRAVESAI 65
Query: 119 RAIHGKVLNGRTVNASIA-----ADNGRASSFIKKRVYKDKSR-----------CYECGD 162
+H K L+GRT++ + A D+ R SS + + R CY+CG
Sbjct: 66 SEMHTKELDGRTISVNRAEPKMNTDDTRYSSGGDRGADRGDYRGGKGDGPPPGNCYQCGR 125
Query: 163 EGHLSYECPRNQLGPRERPMPKKL 186
GH + +CP N G R + K
Sbjct: 126 AGHWARDCP-NPAGGRSGQLSSKF 148
>gi|344247055|gb|EGW03159.1| Heterogeneous nuclear ribonucleoprotein G [Cricetulus griseus]
Length = 384
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+Y+ NL Y ++ DL FS FG++A +++ D+ + +S+G F++ + +A A +
Sbjct: 2 NIYIGNLAYTVSEDDLRDAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIES 61
Query: 121 IHGKVLNGRTVNASIA 136
++GK LNGRTV + A
Sbjct: 62 MNGKDLNGRTVTVNEA 77
>gi|255561192|ref|XP_002521608.1| U1 small nuclear ribonucleoprotein 70 kDa, putative [Ricinus
communis]
gi|223539286|gb|EEF40879.1| U1 small nuclear ribonucleoprotein 70 kDa, putative [Ricinus
communis]
Length = 506
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T++V+ L+Y T S + F ++G I RV ++ D+A K RG AFI+++ D +A +
Sbjct: 139 TLFVARLNYETTESRIKREFESYGPIKRVRLITDKAANKPRGYAFIEYMHTRDMKAAYKQ 198
Query: 121 IHGKVLNGRTV 131
G+ L+GR V
Sbjct: 199 ADGRKLDGRRV 209
>gi|354475287|ref|XP_003499861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Cricetulus griseus]
Length = 289
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|380811822|gb|AFE77786.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383417591|gb|AFH32009.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
Length = 289
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|296236539|ref|XP_002763369.1| PREDICTED: RNA-binding motif protein, X chromosome [Callithrix
jacchus]
Length = 289
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|226423972|gb|ACO53091.1| MIP01221p [Drosophila melanogaster]
Length = 195
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 24 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 83
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 84 MDGRMLDGRELRVQMA 99
>gi|195351055|ref|XP_002042052.1| GM26218 [Drosophila sechellia]
gi|195578745|ref|XP_002079224.1| GD22120 [Drosophila simulans]
gi|194123876|gb|EDW45919.1| GM26218 [Drosophila sechellia]
gi|194191233|gb|EDX04809.1| GD22120 [Drosophila simulans]
Length = 195
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 83
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 84 MDGRMLDGRELRVQMA 99
>gi|156368859|ref|XP_001627909.1| predicted protein [Nematostella vectensis]
gi|224488026|sp|A7SKE9.1|EIF3G_NEMVE RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Eukaryotic
translation initiation factor 3 subunit 4
gi|156214871|gb|EDO35846.1| predicted protein [Nematostella vectensis]
Length = 294
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 29 PANPSS-SSSADVTSSGPHKKSKGSGGLAPSKS------TVYVSNLDYALTNSDLHTLFS 81
PANP++ S+S + G + G PS+S T+ V+NL SDL LF
Sbjct: 174 PANPAAASTSGKYVAPGLRDGANRRGETMPSRSQRDETATIRVTNLSEETRESDLQELFR 233
Query: 82 TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128
G I+R+ + KD+ T +S+G AFI FV D AARAI +VL+G
Sbjct: 234 PLGPISRIFLAKDKFTNQSKGFAFINFVHRED---AARAI--EVLSG 275
>gi|62320860|dbj|BAD93824.1| splicing factor-like protein [Arabidopsis thaliana]
Length = 308
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG P+ +YV NL + ++ L +F FG + V + D T + +G FIQFVQ+
Sbjct: 39 GGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 98
Query: 113 DALSAARAIHGKV-LNGRTVNASIAADN 139
+ +A A++GK+ + GRT+ S +D+
Sbjct: 99 HSKAAQIALNGKLEIAGRTIKVSSVSDH 126
>gi|149015800|gb|EDL75124.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_c [Rattus norvegicus]
Length = 289
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|5579009|emb|CAB51361.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
gi|74228065|dbj|BAE37998.1| unnamed protein product [Mus musculus]
gi|148710226|gb|EDL42172.1| RNA binding motif protein, X chromosome, isoform CRA_c [Mus
musculus]
Length = 289
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|363807806|ref|NP_001242436.1| uncharacterized protein LOC100776329 [Glycine max]
gi|255640857|gb|ACU20711.1| unknown [Glycine max]
Length = 177
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NL + DL F +G + V V R+ G AFI+F DAL A +
Sbjct: 2 SRVYVGNLHPRVNERDLEDEFRIYGVLMSVWV-----ARRPPGYAFIEFDDRRDALDAIQ 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
A+ GK NG V S N + + + ++CYECG+ GH + EC R ++G R
Sbjct: 57 ALDGK--NGWRVELS---HNSKGGGRGGRGRGGEDTKCYECGEPGHFAREC-RLRIGSR 109
>gi|148702008|gb|EDL33955.1| mCG116386, isoform CRA_e [Mus musculus]
Length = 179
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 26 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 85
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ L+GR + A
Sbjct: 86 SDAMRAMNGESLDGRQIRVDHAG 108
>gi|322789593|gb|EFZ14819.1| hypothetical protein SINV_10987 [Solenopsis invicta]
gi|332021256|gb|EGI61641.1| Splicing factor, arginine/serine-rich 2 [Acromyrmex echinatior]
Length = 175
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 15 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDA 74
Query: 121 IHGKVLNGRTVNASIAADNGRASS 144
+ G++L+GR + +A GR +S
Sbjct: 75 MDGRLLDGRELRVQMAR-YGRPTS 97
>gi|307197633|gb|EFN78812.1| Splicing factor, arginine/serine-rich 2 [Harpegnathos saltator]
Length = 175
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 15 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDA 74
Query: 121 IHGKVLNGRTVNASIAADNGRASS 144
+ G++L+GR + +A GR +S
Sbjct: 75 MDGRLLDGRELRVQMAR-YGRPTS 97
>gi|403300126|ref|XP_003940808.1| PREDICTED: RNA binding motif protein, X-linked-like-1-like, partial
[Saimiri boliviensis boliviensis]
Length = 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|355566744|gb|EHH23123.1| Testis-specific heterogeneous nuclear ribonucleoprotein G-T [Macaca
mulatta]
Length = 280
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|351715732|gb|EHB18651.1| Heterogeneous nuclear ribonucleoprotein G [Heterocephalus glaber]
Length = 356
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + L +FS +G+I+ V V+KDR T++SRG F+ F +A A A+
Sbjct: 7 LFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFENPDEAKDAMLAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK L+GR + A
Sbjct: 67 NGKSLDGRQIRVDQAG 82
>gi|297711157|ref|XP_002832216.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Pongo abelii]
Length = 438
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 57 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 116
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 117 NGKSLDGKAIKVEQA 131
>gi|83699420|ref|NP_033059.2| RNA binding motif protein, X-linked-like-1 [Mus musculus]
gi|355390287|ref|NP_001239018.1| RNA binding motif protein, X-linked-like-1 [Mus musculus]
gi|81916088|sp|Q91VM5.1|RMXL1_MOUSE RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
AltName: Full=RNA binding motif protein, X chromosome
retrogene; Contains: RecName: Full=RNA binding motif
protein, X-linked-like-1, N-terminally processed
gi|15030328|gb|AAH11441.1| Rbmxrt protein [Mus musculus]
gi|26334797|dbj|BAC31099.1| unnamed protein product [Mus musculus]
gi|58476937|gb|AAH89350.1| RNA binding motif protein, X chromosome retrogene [Mus musculus]
Length = 388
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|402894334|ref|XP_003910320.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Papio
anubis]
Length = 394
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|354477196|ref|XP_003500808.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Cricetulus griseus]
gi|344244124|gb|EGW00228.1| Heterogeneous nuclear ribonucleoprotein G [Cricetulus griseus]
Length = 388
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|220903771|ref|YP_002479083.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868070|gb|ACL48405.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 88
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++YV NL ++ T D+ +LFS FG++ V ++ DR T ++RG F++ ++ DA +A
Sbjct: 3 TSIYVGNLSWSTTQGDVESLFSAFGQVLSVNLISDRETGRARGFGFVE-MEDDDAANAIS 61
Query: 120 AIHGKVLNGRTV 131
A+ GK ++GR++
Sbjct: 62 ALDGKEVDGRSL 73
>gi|195114806|ref|XP_002001958.1| GI17122 [Drosophila mojavensis]
gi|193912533|gb|EDW11400.1| GI17122 [Drosophila mojavensis]
Length = 203
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 25 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 84
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 85 MDGRMLDGRELRVQMA 100
>gi|148678911|gb|EDL10858.1| mCG7984 [Mus musculus]
Length = 388
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|405967042|gb|EKC32256.1| Splicing factor, arginine/serine-rich 2 [Crassostrea gigas]
Length = 183
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y T DL F +G + V + +DR TR+SRG AF++F DA A
Sbjct: 14 TSLKVDNLTYRTTPEDLRRAFDKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDALD 73
Query: 120 AIHGKVLNGRTVNASIA 136
++ G +++GR + +A
Sbjct: 74 SMDGAIMDGRELRVQMA 90
>gi|403290994|ref|XP_003936587.1| PREDICTED: putative RNA-binding protein 3-like [Saimiri boliviensis
boliviensis]
Length = 159
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V+ L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVAGLNFNNDEQPLEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLS 167
A +A++G+ L+G + +A +A R +F+ + SR GD+G+ S
Sbjct: 61 SVAMKAMNGESLDGGQIHVDHAGKSARGTRGGAFVAHGCGRSYSR--GVGDQGYGS 114
>gi|328865472|gb|EGG13858.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 868
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ NL Y T D+ F GK++ V + DR ++KS+G+AF+ F+ A+ AA +
Sbjct: 326 LFIRNLSYTTTEDDIKKFFEAHGKLSEVYIPIDRDSKKSKGIAFVLFMIPEQAMRAANDL 385
Query: 122 HGKVLNGRTVNASIAADNG 140
GK L GR ++ +AA N
Sbjct: 386 DGKTLQGRIIHI-LAAKNA 403
>gi|198474085|ref|XP_001356555.2| GA18884 [Drosophila pseudoobscura pseudoobscura]
gi|198138240|gb|EAL33619.2| GA18884 [Drosophila pseudoobscura pseudoobscura]
Length = 207
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 83
Query: 121 IHGKVLNGRTVNASIAADNGRASS 144
+ G++L+GR + +A GR SS
Sbjct: 84 MDGRMLDGRELRVQMAR-YGRPSS 106
>gi|157125941|ref|XP_001654458.1| serine/arginine rich splicing factor [Aedes aegypti]
gi|157125943|ref|XP_001654459.1| serine/arginine rich splicing factor [Aedes aegypti]
gi|94469018|gb|ABF18358.1| predicted splicing factor [Aedes aegypti]
gi|108873468|gb|EAT37693.1| AAEL010340-PA [Aedes aegypti]
gi|108873469|gb|EAT37694.1| AAEL010340-PB [Aedes aegypti]
Length = 177
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A+ G
Sbjct: 19 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAQDALDAMDG 78
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR +S
Sbjct: 79 RMLDGRELRVQMAR-YGRPTS 98
>gi|542850|pir||S41766 heterogeneous nuclear ribonucleoprotein G - human
Length = 437
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|148710225|gb|EDL42171.1| RNA binding motif protein, X chromosome, isoform CRA_b [Mus
musculus]
Length = 301
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|118790804|ref|XP_318826.3| AGAP009742-PA [Anopheles gambiae str. PEST]
gi|116118108|gb|EAA14228.3| AGAP009742-PA [Anopheles gambiae str. PEST]
Length = 174
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A+ G
Sbjct: 26 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAEDALDAMDG 85
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR +S
Sbjct: 86 RMLDGRELRVQMAR-YGRPTS 105
>gi|170041667|ref|XP_001848576.1| serine/arginine rich splicing factor [Culex quinquefasciatus]
gi|167865236|gb|EDS28619.1| serine/arginine rich splicing factor [Culex quinquefasciatus]
Length = 186
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A+ G
Sbjct: 19 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAQDALDAMDG 78
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR +S
Sbjct: 79 RMLDGRELRVQMAR-YGRPTS 98
>gi|149015798|gb|EDL75122.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_a [Rattus norvegicus]
Length = 306
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|72390421|ref|XP_845505.1| RNA-binding protein RBP14 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62360364|gb|AAX80780.1| RNA-binding protein RBP14, putative [Trypanosoma brucei]
gi|70802040|gb|AAZ11946.1| RNA-binding protein RBP14, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328909|emb|CBH11887.1| RNA-binding protein RBP14, putative [Trypanosoma brucei gambiense
DAL972]
Length = 214
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 41 TSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
T++ + K +G +A ++V+V +D T SDL FS G I R+T+L+D+ T +
Sbjct: 45 TAAQDEGQRKTTGVVASKNTSVFVGGMDPRTTESDLRVFFSACGTIKRLTMLRDKFTGQQ 104
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
+G A+I+F + A +AA +G+ L+G+ + ++ DN
Sbjct: 105 KGTAYIEFETVEQA-AAAIVKNGQSLHGKPLTVAMKRDN 142
>gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
Length = 162
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + L +F +G+I+ V V+KDR T++SRG F+ F DA A A+
Sbjct: 9 LFVGGLSFDTEEQSLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPEDAKDAMEAM 68
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 69 NGKSVDGRQIRVDQAG 84
>gi|115449145|ref|NP_001048352.1| Os02g0789400 [Oryza sativa Japonica Group]
gi|75324004|sp|Q6K4N0.1|RSZ21_ORYSJ RecName: Full=Serine/arginine-rich splicing factor RSZ21; AltName:
Full=RS-containing zinc finger protein 21;
Short=Os-RSZ21; Short=Os-RSZp21
gi|47497051|dbj|BAD19103.1| putative Splicing factor, arginine/serine-rich 7 [Oryza sativa
Japonica Group]
gi|47497773|dbj|BAD19873.1| putative Splicing factor, arginine/serine-rich 7 [Oryza sativa
Japonica Group]
gi|113537883|dbj|BAF10266.1| Os02g0789400 [Oryza sativa Japonica Group]
gi|215706489|dbj|BAG93345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215706955|dbj|BAG93415.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191722|gb|EEC74149.1| hypothetical protein OsI_09229 [Oryza sativa Indica Group]
gi|222623815|gb|EEE57947.1| hypothetical protein OsJ_08668 [Oryza sativa Japonica Group]
Length = 185
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NLD +T+ +L F FG + V V RK G AFI F DA A R +
Sbjct: 4 LYVGNLDPRVTSGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGP 177
GK NG V S + +S + R + +CYECG+ GH + EC R ++GP
Sbjct: 59 DGK--NGWRVELSRNS----SSRGGRDRHGGSEMKCYECGETGHFAREC-RLRIGP 107
>gi|195472373|ref|XP_002088475.1| GE12283 [Drosophila yakuba]
gi|194174576|gb|EDW88187.1| GE12283 [Drosophila yakuba]
Length = 217
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA
Sbjct: 41 MAAGWQRCVVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDA 100
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
A A+ G++L+GR + +A
Sbjct: 101 EDALEAMDGRMLDGRELRVQMA 122
>gi|224144714|ref|XP_002325387.1| predicted protein [Populus trichocarpa]
gi|222862262|gb|EEE99768.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD ++ DL F +G + V V R+ G AF++F DA+ A R
Sbjct: 2 SRVYVGNLDPRVSERDLEDEFRMYGVLRSVWV-----ARRPPGYAFVEFDDRRDAIDAIR 56
Query: 120 AIHGKVLNGRTVNASI-AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
A+ GK NG V S + G S R + S+CYECG+ GH + EC R ++G R
Sbjct: 57 ALDGK--NGWRVELSHNSKGGGGRSGDGHGRGGGEDSKCYECGEPGHFAREC-RLRIGSR 113
>gi|21356157|ref|NP_651968.1| RNA and export factor binding protein 1 [Drosophila melanogaster]
gi|5679350|gb|AAD46930.1|AF172637_1 LD24793p [Drosophila melanogaster]
gi|7298863|gb|AAF54070.1| RNA and export factor binding protein 1 [Drosophila melanogaster]
gi|220953584|gb|ACL89335.1| Aly-PA [synthetic construct]
Length = 266
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP + + G GG P++ + V NLDY ++N+D+ LF+ FG I + V DR+ R S G
Sbjct: 96 GPKRGAVG-GGSGPTR--LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGR-SLGT 151
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
A + F + DAL A + HG L+GR + +A
Sbjct: 152 ADVIFERRADALKAIKQYHGVPLDGRPMTIQLA 184
>gi|195401200|ref|XP_002059202.1| GJ16161 [Drosophila virilis]
gi|194156076|gb|EDW71260.1| GJ16161 [Drosophila virilis]
Length = 202
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 25 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 84
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 85 MDGRMLDGRELRVQMA 100
>gi|115387941|ref|XP_001211476.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195560|gb|EAU37260.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 376
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 29 PANPSSSSSADVTSSGPHKKSKGSG----GLAPSKS---------TVYVSNLDYALTNSD 75
PA PS SS D S+GP GSG G A + T +V NL + T++D
Sbjct: 35 PAPPSQSSFGDRRSAGPPSAGFGSGFNDRGYATREPLPLPTEPPFTAHVGNLSFDATSAD 94
Query: 76 LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135
+ LF+ G + V +++D+ TR +G +++F + D L A + G L GR + SI
Sbjct: 95 ISDLFAECG-VTNVRIVEDKLTRSPKGFGYVEFETV-DGLKKALDLSGATLQGRAIRVSI 152
Query: 136 A 136
A
Sbjct: 153 A 153
>gi|432106513|gb|ELK32262.1| Serine/arginine-rich splicing factor 7 [Myotis davidii]
Length = 226
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF+ F DA A
Sbjct: 16 ETKVYVGNLATGAGKGELERAFSYYGPLTTVWI-----ARNPPGFAFVGFEDPRDAEDAV 70
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPR 172
R + GKV+ V ++ R S + + + RCYECG++GH +Y C R
Sbjct: 71 RGLDGKVICDSRVRVELSTGMPRRSYLDRPPARHPFDPNDRCYECGEKGHYAYYCHR 127
>gi|428167060|gb|EKX36025.1| hypothetical protein GUITHDRAFT_117814 [Guillardia theta CCMP2712]
Length = 125
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 31 NPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVT 90
NP +SS+ S G GL P + +YV NL++ ++N DL F FG +
Sbjct: 8 NPDNSSAGQEGSRPASNNYSGRTGLLPKEFQIYVGNLNWKVSNEDLKNFFGEFGDVKFAK 67
Query: 91 VLKDRATR-KSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
V+ DR +SRG F+ F A +A + GR + ++A
Sbjct: 68 VVMDRENPFRSRGFGFVGFANAEQAQNAVEKCDQEEFMGRKIMVNMA 114
>gi|395815171|ref|XP_003781108.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Otolemur
garnettii]
Length = 393
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNPETDEKALEAAFGKYGRIVEVLLMKDRETSKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|357608819|gb|EHJ66166.1| putative serine/arginine rich splicing factor [Danaus plexippus]
Length = 165
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G + + + +DR TR+SRG AF++F + DA A ++ G
Sbjct: 18 VDNLTYRTTPDDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDSLDG 77
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR SS
Sbjct: 78 RMLDGRELRVQMAR-YGRPSS 97
>gi|406896127|gb|EKD40506.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 92
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y ++ SDL +F FGK+ +++ D+ + +S+G F++ +A SA A+
Sbjct: 3 LYVGNLSYEISESDLKQMFEEFGKVGSASIIMDKYSGQSKGFGFVEMDSQTEAQSAMEAL 62
Query: 122 HGKVLNGRTV 131
+GK + GRT+
Sbjct: 63 NGKDVKGRTL 72
>gi|332211654|ref|XP_003254929.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Nomascus
leucogenys]
Length = 393
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|55778182|gb|AAH86491.1| Rbm3 protein [Mus musculus]
Length = 128
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTV 131
A RA++G+ L+GR +
Sbjct: 61 SDAMRAMNGESLDGRQI 77
>gi|15231912|ref|NP_187457.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|6648212|gb|AAF21210.1|AC013483_34 putative RNA-binding protein [Arabidopsis thaliana]
gi|45752630|gb|AAS76213.1| At3g08000 [Arabidopsis thaliana]
gi|46359799|gb|AAS88763.1| At3g08000 [Arabidopsis thaliana]
gi|332641108|gb|AEE74629.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 143
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L +++ L FS+FG++A V + D+ + +SRG F+ F + DALSA A+
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDK 154
GK L GR + S A + R + R+ K K
Sbjct: 103 DGKGLLGRPLRISFALERVRGGPVVVPRLGKSK 135
>gi|41055734|ref|NP_956476.1| TIA1 cytotoxic granule-associated RNA binding protein 1 [Danio
rerio]
gi|28277744|gb|AAH45485.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
gi|44890544|gb|AAH66734.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V+V +L ++ D+ F+ FGKI+ V+KD AT KS+G FI F+ DA SA + +
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGP 177
+G+ L GR + + A R S K S+ HLSYE NQ P
Sbjct: 159 NGQWLGGRQIRTNWAT---RKPSAPKSNNEGASSK--------HLSYEEVLNQSSP 203
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
+PS TVY + L++ + FS FG+I + V + +G +F++F A
Sbjct: 202 SPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFDSHEGAA 255
Query: 116 SAARAIHGKVLNGRTV 131
A +++G + G TV
Sbjct: 256 HAIVSVNGTCIEGHTV 271
>gi|426367314|ref|XP_004050678.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Gorilla
gorilla gorilla]
Length = 392
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|91075992|ref|XP_970765.1| PREDICTED: similar to RNA binding motif protein 19 [Tribolium
castaneum]
gi|270014609|gb|EFA11057.1| hypothetical protein TcasGA2_TC004651 [Tribolium castaneum]
Length = 231
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 56 APSKS------TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV 109
APS S V V+NLD+ T + L + FS+ G + + ++ T SRG+ ++++
Sbjct: 13 APSTSYGEQYYIVRVANLDFGTTEATLKSFFSSCGDVHECVISRNIDTNTSRGIGHVKYL 72
Query: 110 QIPDALSAARAIHGKVLNGRTVNASI 135
++ DAL AAR ++G+VL+GRT++ +
Sbjct: 73 RVRDALEAARNLNGEVLDGRTLHVYL 98
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P TV ++NL+Y + DL +FS G IA + V + R T +RG AF++F + DAL
Sbjct: 128 PPAFTVKITNLNYKIDEEDLKKIFSGIGPIADIYVPRLRYTHLNRGFAFVRFHREADALY 187
Query: 117 AARAIHGKVLNGRTVNASIA 136
A + K + GR + ++A
Sbjct: 188 AISKLDRKEVQGRNMCLAMA 207
>gi|332226186|ref|XP_003262269.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Nomascus
leucogenys]
Length = 1033
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L L F +G+I V ++KDR T KSRG AFI F DA +AAR +
Sbjct: 10 LFIGGLSLKTDEKALKAEFGKYGRIIEVFLMKDRETNKSRGFAFIIFESPADANAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + ++A
Sbjct: 70 NGKYLDGKAIKVALA 84
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + + L FS +G IA+V V++DR TR+SRG F+ F DA A A+
Sbjct: 7 LFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETRRSRGFGFVTFENPEDAKDAMAAM 66
Query: 122 HGKVLNGRTV 131
+GK ++GR +
Sbjct: 67 NGKSVDGRMI 76
>gi|312373610|gb|EFR21320.1| hypothetical protein AND_17210 [Anopheles darlingi]
Length = 170
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 16 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAEDALDA 75
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 76 MDGRMLDGRELRVQMA 91
>gi|291384550|ref|XP_002708825.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
Length = 359
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNPETDEKALEAAFGKYGRIIEVLLMKDRETSKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L T F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRTKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|348019723|gb|AEP43803.1| SR-protein [Biston betularia]
Length = 152
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A ++ G
Sbjct: 18 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDRRDAEEALDSLDG 77
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR SS
Sbjct: 78 RMLDGRELRVQMAR-YGRPSS 97
>gi|153252068|ref|NP_055284.3| RNA-binding motif protein, X-linked-like-2 [Homo sapiens]
gi|229462965|sp|O75526.3|HNRGT_HUMAN RecName: Full=RNA-binding motif protein, X-linked-like-2; AltName:
Full=Testis-specific heterogeneous nuclear
ribonucleoprotein G-T; Short=hnRNP G-T
Length = 392
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|255535545|ref|YP_003095916.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
gi|255341741|gb|ACU07854.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
Length = 122
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++VSN++Y+ L LFS FG+++ ++ DR T +SRG F++ + D +A A
Sbjct: 3 NIFVSNINYSTREESLQDLFSEFGEVSSAKIITDRETGRSRGFGFVE-MSDEDGKNAIEA 61
Query: 121 IHGKVLNGRTVNASIA 136
++GK L+G+ +N S A
Sbjct: 62 LNGKELDGKELNVSEA 77
>gi|8576316|gb|AAC24858.2| testes specific heterogenous nuclear ribonucleoprotein G-T [Homo
sapiens]
gi|119589071|gb|EAW68665.1| testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo
sapiens]
Length = 392
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|313231584|emb|CBY08698.1| unnamed protein product [Oikopleura dioica]
Length = 278
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 18 FYYRYASTGNAPANPSSSSSADVTSSGPHKKSKG---------SGGLAPSKSTVYVSNLD 68
++ + G A + S+++ D+ S + G +GG + VSNL
Sbjct: 130 YFNFFQGFGGATSTRPSATNMDIPSVSIKDATGGKYVPPRRGLAGGFTDEVPAIRVSNLS 189
Query: 69 YALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
A T D+ TLF+ FGKIAR+ + +DR T +SRG AFI F DA A
Sbjct: 190 PAATQDDVQTLFAKFGKIARIHLGRDRRTNESRGFAFINFHHRDDAQRA 238
>gi|297744765|emb|CBI38027.3| unnamed protein product [Vitis vinifera]
Length = 918
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 47 KKSKGSGGLAPSK---STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
KK+K GG A + STV+VSN Y+ TNS L FS G I R ++ + + + RG
Sbjct: 3 KKNKTEGGGARDQHCPSTVFVSNFPYSFTNSQLEETFSDVGPIRRCFMVTQKGSTEHRGF 62
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNG---------RASSFIKKRVYKDK 154
F+QF DA A +G + GR + +A IK R KD
Sbjct: 63 GFVQFAVKEDANRAIELKNGSSIGGRKIGVKLAMHRTPLEQRRSKENQDDIIKTRTEKDS 122
Query: 155 SRCYECGDEGHLS 167
S E +GH S
Sbjct: 123 SS--EVVKQGHAS 133
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + + ++ FS FG++ + + T++ +G F++F
Sbjct: 493 TIFISNLPFDIDKEEVKQQFSKFGEVQSFVPVLHQVTKRPKGTGFLKF 540
>gi|350534520|ref|NP_001233578.1| RNA-binding motif protein, X-linked-like-2 [Pan troglodytes]
gi|343958222|dbj|BAK62966.1| testes-specific heterogenous nuclear ribonucleoprotein G-T [Pan
troglodytes]
gi|343961837|dbj|BAK62506.1| testes-specific heterogenous nuclear ribonucleoprotein G-T [Pan
troglodytes]
Length = 392
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|357490875|ref|XP_003615725.1| Eukaryotic translation initiation factor 3 subunit G [Medicago
truncatula]
gi|355517060|gb|AES98683.1| Eukaryotic translation initiation factor 3 subunit G [Medicago
truncatula]
Length = 149
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P S + V NL Y + L FS FGKIA V ++KD +T +S+G+AFIQ+ DA+
Sbjct: 36 PLASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAML 95
Query: 117 AARAIHGKVLNGRTVNASI 135
A + + GRT++ +
Sbjct: 96 ALETMDQQSFYGRTISVEL 114
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y +T S+L +FS+FG++ R ++KD+ T +S+G F++ A A
Sbjct: 4 IYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGT 63
Query: 122 HGKVLNGRTVNASIA 136
+GK + GR + + A
Sbjct: 64 NGKEVGGRALRVNEA 78
>gi|158257974|dbj|BAF84960.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|428185150|gb|EKX54003.1| hypothetical protein GUITHDRAFT_132430 [Guillardia theta CCMP2712]
Length = 162
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++VS + +AL++ DL F FG + V+KDR T +SRG AFI F A A A+
Sbjct: 61 LFVSGIPFALSSEDLRETFEKFGPVEDSYVVKDRETGRSRGFAFITFSSKEAASQACSAL 120
Query: 122 HGKVLNGRTVNASIAAD 138
+ L GRTV S A D
Sbjct: 121 NESDLGGRTVKVSFAKD 137
>gi|195035777|ref|XP_001989348.1| GH11678 [Drosophila grimshawi]
gi|193905348|gb|EDW04215.1| GH11678 [Drosophila grimshawi]
Length = 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A
Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEA 83
Query: 121 IHGKVLNGRTVNASIA 136
+ G++L+GR + +A
Sbjct: 84 MDGRMLDGRELRVQMA 99
>gi|332373880|gb|AEE62081.1| unknown [Dendroctonus ponderosae]
Length = 168
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A+ G
Sbjct: 18 VDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDAMDG 77
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR +S
Sbjct: 78 RMLDGRELRVQMAR-YGRPTS 97
>gi|67484322|ref|XP_657381.1| RNA-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|56474635|gb|EAL51997.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449706848|gb|EMD46607.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 301
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+V+V N+ Y +D++ F++ G + + V+ ++ T KSRG ++ FV + A
Sbjct: 141 SVFVKNIPYGWATNDMYQYFASSGPV-KTRVITNKETGKSRGFGYLDFVDLEAANKFVEE 199
Query: 121 IHGKVLNGRTVNASIA-------ADN--GRASSFI------KKRVYKDK----SRCYECG 161
G+ ++GR + +A DN G+ +F K+ YK K + C+ CG
Sbjct: 200 HQGEEVDGRPLFLDLADGKKGGDKDNNGGKFGAFGSSNKTGKQHTYKGKQGGDNVCFNCG 259
Query: 162 DEGHLSYECP 171
GH+S ECP
Sbjct: 260 KPGHMSRECP 269
>gi|407035882|gb|EKE37908.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 300
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+V+V N+ Y +D++ F++ G + + V+ ++ T KSRG ++ FV + A
Sbjct: 140 SVFVKNIPYGWATNDMYQYFASSGPV-KTRVITNKETGKSRGFGYLDFVDLEAANKFVEE 198
Query: 121 IHGKVLNGRTVNASIA-------ADN--GRASSFI------KKRVYKDK----SRCYECG 161
G+ ++GR + +A DN G+ +F K+ YK K + C+ CG
Sbjct: 199 HQGEEVDGRPLFLDLADGKKGGDKDNNGGKFGAFGSSNKTGKQHTYKGKQGGDNVCFNCG 258
Query: 162 DEGHLSYECP 171
GH+S ECP
Sbjct: 259 KPGHMSRECP 268
>gi|440912647|gb|ELR62200.1| Heterogeneous nuclear ribonucleoprotein G, partial [Bos grunniens
mutus]
Length = 206
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I+ V ++KDR T KSRG AFI F DA +A R +
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|331242735|ref|XP_003334013.1| RNA-binding protein rsd1 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 546
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 46 HKKSKGSGGLAP-SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
++ ++G G P S + +YV +L++ LT+ D+ +F FG I V + +D+ T KS+G A
Sbjct: 409 YELNRGPGPNDPNSYARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYA 468
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137
F+QF + DA +A ++G L GR + I A
Sbjct: 469 FVQFKNMHDAKNAMEKMNGFQLAGRALRVEIKA 501
>gi|168016855|ref|XP_001760964.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687973|gb|EDQ74353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 388
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 18/141 (12%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+ P ++ ++V L+ DL +F FGK+ +++D T S AFI+F +
Sbjct: 235 MKPPENVLFVCKLNPVTEEGDLELIFGRFGKVKSADIIRDYKTGDSLCYAFIEF----ET 290
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYK------DKSR----CYECGDEG 164
A A + K+ N + I D ++ S + R K D + C++CG+ G
Sbjct: 291 EEACEAAYFKMDNVLIDDRRIHVDFSQSVSHLWNRYRKLGKAGGDAANGGKGCFKCGEVG 350
Query: 165 HLSYECPRN----QLGPRERP 181
H + ECP N + GP E+P
Sbjct: 351 HFAKECPNNGTEQKEGPTEKP 371
>gi|440295453|gb|ELP88366.1| multiple RNA-binding domain containing protein, putative [Entamoeba
invadens IP1]
Length = 685
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+ V+NL YA + D+ F FG+I V + D+ + K++G AF+ +V DA+ A +
Sbjct: 215 ILVNNLPYACSEQDVREAFEKFGEITEVHLPIDKVSGKTKGFAFVMYVVPQDAVKAFNEM 274
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKK--RVYKDK 154
G+V+ GR ++ + A + A + +K + YKDK
Sbjct: 275 DGQVIKGRIIHVNYAKADPYAQTTEEKEAKTYKDK 309
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T+Y+ N++ T L +F+ +G+I V++ K+ + K+ F++F + AL+A +
Sbjct: 508 TLYIKNVNPKTTEDTLRKVFTQYGQIHSVSISKNPTSSKN-VFCFLEFARHSSALNAMKN 566
Query: 121 IHGKVLNGRTV 131
G++++G +
Sbjct: 567 AQGQLVDGNAI 577
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+YVSNL + + + DL LFS +G+++ V+ DR T +SRG F++ +A A +
Sbjct: 2 NLYVSNLGFQVNDDDLAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIKE 61
Query: 121 IHGKVLNGRTVNASIA 136
+ GK + GR+++ S A
Sbjct: 62 LEGKPVEGRSLSVSEA 77
>gi|299755304|ref|XP_002912089.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
gi|298411164|gb|EFI28595.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
Length = 580
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G+ S + +YV +L + LT SD+ +F FG++ V + KD T +S+G AF+Q+ + D
Sbjct: 349 GVTASGAILYVGSLHFNLTESDIKQVFEPFGELEFVDLHKDPMTGRSKGYAFVQYKRAED 408
Query: 114 ALSAARAIHGKVLNGRTVNASIAADNG 140
A A + G L GRT+ + + G
Sbjct: 409 ARMALEQMEGFELAGRTLRVNTVHEKG 435
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 61 TVYVSNLDYALTNSDLHTLFST---FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+V+VS L LT DL F G + ++ DR +R+S+G+ +++F I D +
Sbjct: 253 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDARIVTDRLSRRSKGIGYVEFRSI-DLVEK 311
Query: 118 ARAIHGKVLNGRTVNASI 135
A A+ G ++ G +N +
Sbjct: 312 AIALSGTIVMGLPINVQL 329
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+YV NL Y LT ++L +FS +G++A ++ D+ + KSRG F+ DA A A
Sbjct: 2 NIYVGNLSYTLTENELRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIEA 61
Query: 121 IHGKVLNGRTV 131
++G L+GR++
Sbjct: 62 LNGSQLDGRSL 72
>gi|198422995|ref|XP_002122454.1| PREDICTED: zinc finger (CCHC)-24 isoform 2 [Ciona intestinalis]
Length = 205
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +YV NL + T DL F +G++ V V K G A+++F DA A +
Sbjct: 5 TKIYVGNLSSSTTRGDLEYEFEYYGRLINVWVAK-----SPPGFAYVEFEDPRDADDAIK 59
Query: 120 AIHGKVLNGRTVNASIA---ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
+ GK L+GR + + N + +R + RCY CG+ GH +Y+C
Sbjct: 60 GLDGKELHGRRIRVERSHGMPRNRGSDRDRSRRAFHPSDRCYNCGETGHYAYDC 113
>gi|218263153|ref|ZP_03477372.1| hypothetical protein PRABACTJOHN_03053 [Parabacteroides johnsonii
DSM 18315]
gi|423341699|ref|ZP_17319414.1| hypothetical protein HMPREF1077_00844 [Parabacteroides johnsonii
CL02T12C29]
gi|218222938|gb|EEC95588.1| hypothetical protein PRABACTJOHN_03053 [Parabacteroides johnsonii
DSM 18315]
gi|409220587|gb|EKN13542.1| hypothetical protein HMPREF1077_00844 [Parabacteroides johnsonii
CL02T12C29]
Length = 102
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+Y++ L+Y++ ++DL+ LF+ +G+I V+ DR T +SRG F++ V D A A
Sbjct: 2 NIYITGLNYSINDADLNDLFAEYGEITSAKVIMDRETGRSRGFGFVEMVNDGDGQKAIDA 61
Query: 121 IHGKVLNGRTVNASIA 136
++G + ++ S+A
Sbjct: 62 LNGAEFEKKVISVSVA 77
>gi|283781639|ref|YP_003372394.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
gi|283440092|gb|ADB18534.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
Length = 156
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL + ++SDL LF FG +A V+ DR T +SRG F+Q D A +
Sbjct: 5 IYVGNLPWTYSSSDLEALFKPFGDVAAAEVIMDRETGRSRGFGFVQMANDADCEPAVNGL 64
Query: 122 HGKVLNGRTV 131
+G NGR +
Sbjct: 65 NGTNCNGRPL 74
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +YV NL Y++T+S L + FS FG + V+ DR T +S+G F++ A +A
Sbjct: 3 SKIYVGNLPYSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAIT 62
Query: 120 AIHGKVLNGRTVNASIA 136
+HG ++GR++ ++A
Sbjct: 63 GLHGMSVDGRSIVVNLA 79
>gi|45361253|ref|NP_989204.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|38648979|gb|AAH63354.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|89272511|emb|CAJ82586.1| RNA binding motif protein 4 [ [Xenopus (Silurana) tropicalis]
Length = 338
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
S G + + ++VSNL + T+ +L F +G + ++KD AF+ +
Sbjct: 70 SRGKPKASTKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKD--------YAFVHMERS 121
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
+AL A + + G+ ++ ++ R + + +R +RCY CG EGH S ECP
Sbjct: 122 AEALDAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMGER-----TRCYRCGKEGHWSKECP 176
Query: 172 RNQL 175
+Q+
Sbjct: 177 LDQM 180
>gi|226497758|ref|NP_001149338.1| LOC100282961 [Zea mays]
gi|195607586|gb|ACG25623.1| splicing factor, arginine/serine-rich 7 [Zea mays]
gi|195611760|gb|ACG27710.1| splicing factor, arginine/serine-rich 7 [Zea mays]
gi|223942181|gb|ACN25174.1| unknown [Zea mays]
gi|223946575|gb|ACN27371.1| unknown [Zea mays]
gi|413952876|gb|AFW85525.1| Splicing factor, arginine/serine-rich 7 isoform 1 [Zea mays]
gi|413952877|gb|AFW85526.1| Splicing factor, arginine/serine-rich 7 isoform 2 [Zea mays]
gi|413952878|gb|AFW85527.1| Splicing factor, arginine/serine-rich 7 isoform 3 [Zea mays]
gi|413952879|gb|AFW85528.1| Splicing factor, arginine/serine-rich 7 isoform 4 [Zea mays]
gi|448878146|gb|AGE46036.1| arginine/serine-rich splicing factor RSZ21 transcript I [Zea mays]
gi|448878148|gb|AGE46037.1| arginine/serine-rich splicing factor RSZ21 transcript II [Zea mays]
Length = 184
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NLD +T +L F TFG + V V RK G AFI F DA A R +
Sbjct: 4 LYIGNLDPRVTARELEDEFRTFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S N + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELS---RNASGGRGGRDRHGGSESKCYECGETGHFAREC 102
>gi|410445335|gb|ADB77883.2| Rbmy [Bos taurus]
Length = 387
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
+ L T L F +G I V ++KDR T KSRG AFI F DA AA+ ++G
Sbjct: 11 IGGLSAETTEESLEAEFGKYGHIVEVLLIKDRNTNKSRGFAFITFESPADAKDAAKEMNG 70
Query: 124 KVLNGRTVNASIA 136
K L+G+T+ A
Sbjct: 71 KFLDGKTIKVEQA 83
>gi|71408239|ref|XP_806536.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70870310|gb|EAN84685.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 231
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
H+KS +G +A ++++V LD T +L FS+ G I R+T+L+D+ T + +G A+
Sbjct: 72 HRKS--TGFVATKNTSIFVGGLDPRTTEGELRVFFSSCGTIKRLTMLRDKFTGQLKGNAY 129
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADN------GRASS 144
I+F + P+ +A G+ L+G+ +N ++ DN GR SS
Sbjct: 130 IEF-EAPEQAAAGILKDGQSLHGKPLNVAMKRDNIPAFQRGRGSS 173
>gi|163916618|gb|AAI57793.1| LOC100135403 protein [Xenopus (Silurana) tropicalis]
Length = 375
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G++ V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKALDGKPIKVEQA 84
>gi|431891348|gb|ELK02224.1| Heterogeneous nuclear ribonucleoprotein G [Pteropus alecto]
Length = 278
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|148228969|ref|NP_001088073.1| RNA binding motif protein 19 [Xenopus laevis]
gi|52354760|gb|AAH82875.1| LOC494769 protein [Xenopus laevis]
Length = 920
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y+ T DL LFS +G I+ + D T+K +G AF+ F+ A+ A +
Sbjct: 388 LFVRNLPYSCTEDDLDKLFSKYGPISEIHFPIDSLTKKPKGFAFVTFLITEHAVKAYAEV 447
Query: 122 HGKVLNGRTVNA--------SIAADNGRASSFIKKRVYKDKS 155
G++ GR ++ + G AS + K++ KDK+
Sbjct: 448 DGQIFQGRLLHVLPSAAKKEEVNESEGDASGYKKQKALKDKA 489
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA-TRKSRGVAFIQFVQIPDALSAA 118
S + V N+ + T ++ LFSTFG++ V + K A T RG F+ FV DA A
Sbjct: 797 SKILVRNVPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFVTKQDAKRAF 856
Query: 119 RAI-HGKVLNGR 129
A+ H L GR
Sbjct: 857 SALCHSTHLYGR 868
>gi|195626508|gb|ACG35084.1| splicing factor, arginine/serine-rich 7 [Zea mays]
Length = 184
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NLD +T +L F TFG + V V RK G AFI F DA A R +
Sbjct: 4 LYIGNLDPRVTARELEDEFRTFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S N + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELS---RNASGGRGGRDRHGGSESKCYECGETGHFAREC 102
>gi|195391988|ref|XP_002054641.1| GJ22697 [Drosophila virilis]
gi|194152727|gb|EDW68161.1| GJ22697 [Drosophila virilis]
Length = 274
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 38 ADVTSSGPH-----KKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVL 92
DV S+ H K GS G + + + V NLDY ++N+D+ LF+ FG + + V
Sbjct: 89 GDVNSAWKHDMYDGPKRNGSAGNSTGPTRLIVGNLDYGVSNTDIKELFNDFGPMKKAAVH 148
Query: 93 KDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
DR+ R S G A + F + DAL A + HG L+GR + +A
Sbjct: 149 YDRSGR-SLGTADVIFERRSDALKAIKQYHGVPLDGRPMTIQLA 191
>gi|226483629|emb|CAX74115.1| RNA-binding protein 28 [Schistosoma japonicum]
Length = 387
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA-----L 115
TV++ NL + + LH FS FG + ++KD T+ SRG AF++FV + DA L
Sbjct: 10 TVFIRNLSFDVGEDALHKFFSHFGLLEFAKIVKDPTTQHSRGTAFVKFVNVEDASNVLKL 69
Query: 116 SA-ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
SA H L RT+N ++A A + K++ +D S
Sbjct: 70 SAKPENAHQFSLENRTLNITLAVSRTEAQNLRKRKHDEDAS 110
>gi|412993650|emb|CCO14161.1| predicted protein [Bathycoccus prasinos]
Length = 499
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G P S +YV ++ + L TLF FG + T+++D T++S+G F+++V+
Sbjct: 87 GESGKKPKHSNLYVWSIPRDMDERQLSTLFQKFGTVESCTIMRDVQTKQSKGYGFVKYVK 146
Query: 111 IPDALSAARAIHGKVLNGRTVNASIAA 137
DA++A +HGK + + + A+
Sbjct: 147 FEDAVNAKEKLHGKFVKDKQLQIKFAS 173
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P+ S +YV N+ + L LF G++ V +++D+ ++ S+G F++F++ +A
Sbjct: 283 PTHSNLYVWNIPRDMEEGSLKHLFEECGEVESVNIMRDKMSQVSKGYGFVKFIRYEEAEK 342
Query: 117 AARAIHGKVL 126
A + G+VL
Sbjct: 343 AIEKVSGRVL 352
>gi|281427346|ref|NP_001163962.1| RNA binding motif protein 19 [Xenopus (Silurana) tropicalis]
gi|189442184|gb|AAI67335.1| Unknown (protein for MGC:135501) [Xenopus (Silurana) tropicalis]
Length = 542
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y DL LFS +G I+ + D T+K +G AF+ F+ A+ A +
Sbjct: 388 LFVRNLPYTCNEDDLEKLFSKYGPISEIHFPIDSLTKKPKGFAFVTFLITEHAVKAYAEV 447
Query: 122 HGKVLNGRTVNA--------SIAADNGRASSFIKKRVYKDKS 155
G++ GR ++ + G AS + K++ KDK+
Sbjct: 448 DGQIFQGRMLHVLPSAAKKDEVNESEGEASGYKKQKALKDKA 489
>gi|449478559|ref|XP_004155352.1| PREDICTED: serine/arginine-rich splicing factor RSZ22-like [Cucumis
sativus]
Length = 188
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VY+ NLD +T DL F FG + V V R+ G AFI+F DAL A +
Sbjct: 2 TRVYIGNLDPRVTERDLEDEFRMFGVLRSVWV-----ARRPPGYAFIEFDDRRDALDAIQ 56
Query: 120 AIHGKVLNGRTVNAS-------IAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A+ GK NG V S D +CYECG+ GH + EC
Sbjct: 57 ALDGK--NGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGGDDLKCYECGEPGHFAREC 112
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 47 KKSKGSGGL------APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
K+S GSG + S S V+V + Y + L FS +G++ V+ DR + +S
Sbjct: 12 KRSAGSGSAMLQAVRSMSSSKVFVGGISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRS 71
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSF 145
RG F+ F +A +A + GK L GR V S A D G SF
Sbjct: 72 RGFGFVTFTSSEEAGAAITGMDGKDLQGRIVRVSYAHDRGSRPSF 116
>gi|134057335|emb|CAK44534.1| unnamed protein product [Aspergillus niger]
Length = 538
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 14/157 (8%)
Query: 32 PSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTV 91
PS A+ +S KKSK + + ++V NL + + + L + F +FG+++ V +
Sbjct: 259 PSKKRKAEEETSATPKKSKTEDPAPGASANLFVGNLSWNVDEAWLQSEFESFGELSGVRI 318
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVY 151
+ +R T +SRG ++++ DA A A G ++GR +N A GR ++ ++ +
Sbjct: 319 MTERDTGRSRGFGYVEYTNAVDAAKAFEAKKGAEIDGRVINLDYA--TGRPANKDQQGGF 376
Query: 152 KDK--SRCYECGDE----------GHLSYECPRNQLG 176
KD+ +R GD+ G+L ++ + +G
Sbjct: 377 KDRANARARSFGDQASPESDTLFVGNLPFDANEDSVG 413
>gi|167382576|ref|XP_001736171.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901525|gb|EDR27604.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 697
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y++NL + T D+ F FG IA + + D+ T+KS+G F+ FV DA+ A +
Sbjct: 188 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 247
Query: 122 HGKVLNGRTVNASIA 136
K + GR V+ + A
Sbjct: 248 DNKFIKGRIVHVTYA 262
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTV--LKDRATRKSRGVAFIQFVQIPDALSAA 118
T+Y+ NL + + +F G++ VT+ KD+ K+ G F+++ + DA++A
Sbjct: 517 TLYIKNLSFKTKEDVIRKVFEKCGRVLAVTLSKTKDKKVEKNSGFGFVEYARHEDAINAI 576
Query: 119 RAIHGKVLNGRTVNASIA 136
+ + GKV++G V I+
Sbjct: 577 KTLQGKVIDGHAVQIEIS 594
>gi|423347235|ref|ZP_17324922.1| hypothetical protein HMPREF1060_02594 [Parabacteroides merdae
CL03T12C32]
gi|409218492|gb|EKN11463.1| hypothetical protein HMPREF1060_02594 [Parabacteroides merdae
CL03T12C32]
Length = 101
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+Y++ L+Y++ ++DL+ LF+ +G+I V+ DR T +SRG F++ V D A A
Sbjct: 2 NIYITGLNYSINDADLNDLFAEYGEITSAKVIMDRETGRSRGFGFVEMVNDGDGQKAIDA 61
Query: 121 IHGKVLNGRTVNASIA 136
++G + ++ S+A
Sbjct: 62 LNGAEFEKKVISVSVA 77
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NL YA+T+S L +F+ G + V V+ D+ T +SRG AF+ + +A A R
Sbjct: 117 LYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 176
Query: 122 HGKVLNGRTV 131
G + GRTV
Sbjct: 177 DGSQIGGRTV 186
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S +Y NL + LT+ L F I ++ DRA+ KSRG F+ F DA SA
Sbjct: 216 SPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESA 275
Query: 118 ARAIHGKVLNGRTVNASIAA 137
+++G + GR + +IAA
Sbjct: 276 LESMNGVEVEGRPLRLNIAA 295
>gi|426245729|ref|XP_004016657.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Ovis
aries]
Length = 174
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L F +G I+ V ++KDR T KSRG AFI F DA +A R +
Sbjct: 10 LFIGGLNHETDEKSLEAAFGKYGHISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|332298346|ref|YP_004440268.1| RNP-1 like RNA-binding protein [Treponema brennaborense DSM 12168]
gi|332181449|gb|AEE17137.1| RNP-1 like RNA-binding protein [Treponema brennaborense DSM 12168]
Length = 117
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL+Y T L + FS +G+I V+KD+ T +S+G FI+ A +A +
Sbjct: 5 IYVGNLNYRTTEDTLSSAFSQYGEIVSAVVIKDKFTEQSKGFGFIEMADDAAADAAIADM 64
Query: 122 HGKVLNGRTVNASIAADNGRAS 143
+GK ++GR V +IA D R S
Sbjct: 65 NGKEVDGRRVRVNIAEDKPRTS 86
>gi|256074424|ref|XP_002573525.1| ribonucleoprotein-related [Schistosoma mansoni]
gi|350645444|emb|CCD59892.1| ribonucleoprotein-related [Schistosoma mansoni]
Length = 451
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T+++ NL + + L+ FS FG + V+KD AT+ SRG AF++FV + DA + +
Sbjct: 10 TIFIRNLSFDVEEDALYKFFSQFGPLEFAKVVKDPATQHSRGTAFVKFVNVEDASNVLQQ 69
Query: 121 ------IHGKVLNGRTVNASIAADNGRASSFIKKR 149
H L RT+N +IA A + K++
Sbjct: 70 SDKPENAHQFSLENRTLNITIAVSRTEAQNLRKRK 104
>gi|226088567|dbj|BAH37028.1| RNA binding motif protein [Tokudaia osimensis]
Length = 279
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 63 YVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122
++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR ++
Sbjct: 1 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 60
Query: 123 GKVLNGRTVNASIA 136
GK L+G+ + A
Sbjct: 61 GKSLDGKAIKVEQA 74
>gi|189347593|ref|YP_001944122.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
gi|189341740|gb|ACD91143.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
Length = 90
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NLDY +T SDL F FG+++ +V+ D+ T +S+G F++ +A A ++
Sbjct: 3 IYIGNLDYNVTESDLRETFGEFGEVSNASVITDKFTGRSKGFGFVEMPNNAEASEAISSL 62
Query: 122 HGKVLNGRTV 131
+ LNGRT+
Sbjct: 63 NDSDLNGRTI 72
>gi|71654126|ref|XP_815688.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70880762|gb|EAN93837.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 231
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
H+KS +G +A ++++V LD T +L FS+ G I R+T+L+D+ T + +G A+
Sbjct: 72 HRKS--TGFVATKNTSIFVGGLDPRTTEGELRVFFSSCGTIKRLTMLRDKFTGQLKGNAY 129
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADN------GRASS 144
I+F + P+ +A G+ L+G+ +N ++ DN GR SS
Sbjct: 130 IEF-EAPEQAAAGILKDGQSLHGKPLNVAMKRDNIPAFQRGRGSS 173
>gi|256828609|ref|YP_003157337.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
gi|256577785|gb|ACU88921.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
Length = 85
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL ++ T++DL +LFS +G++ V++DRAT +SRG F++ + A A +A+
Sbjct: 3 IYVGNLSWSTTDADLKSLFSQYGEVTSAHVIEDRATGRSRGFGFVE-MDDEGARKAIQAV 61
Query: 122 HGKVLNGRTV 131
+G L GRT+
Sbjct: 62 NGTDLQGRTL 71
>gi|115388597|ref|XP_001211804.1| multiple RNA-binding domain-containing protein 1 [Aspergillus
terreus NIH2624]
gi|114195888|gb|EAU37588.1| multiple RNA-binding domain-containing protein 1 [Aspergillus
terreus NIH2624]
Length = 812
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 29 PANPSSSSSADVTSSGPHKKSKGSGGLAPSKST----------VYVSNLDYALTNSDLHT 78
PA PS + S + ++ P + AP T ++V NL Y T +DL
Sbjct: 248 PAEPSDTGSENAENAEPAPEDTAKPPQAPEVDTNIENIRLSARLFVRNLPYDTTEADLEP 307
Query: 79 LFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132
+F FG++ + V D S+G A+IQ+V A+ A +A+ GK GR ++
Sbjct: 308 VFGPFGRVEEIHVAFDTRVSSSKGFAYIQYVDPDAAVEAYKALDGKNFQGRLMH 361
>gi|407851931|gb|EKG05622.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 231
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
H+KS +G +A ++++V LD T +L FS+ G I R+T+L+D+ T + +G A+
Sbjct: 72 HRKS--TGFVATKNASIFVGGLDPRTTEGELRVFFSSCGTIKRLTMLRDKFTGQLKGNAY 129
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADN------GRASS 144
I+F + P+ +A G+ L+G+ +N ++ DN GR SS
Sbjct: 130 IEF-EAPEQAAAGILKDGQSLHGKPLNVAMKRDNIPAFQRGRGSS 173
>gi|358367745|dbj|GAA84363.1| hypothetical protein AKAW_02478 [Aspergillus kawachii IFO 4308]
Length = 546
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 14/157 (8%)
Query: 32 PSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTV 91
PS A+ +S KKSK + + ++V NL + + + L + F +FG+++ V +
Sbjct: 267 PSKKRKAEEETSATPKKSKTEDPAPGASANLFVGNLSWNVDEAWLQSEFESFGELSGVRI 326
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVY 151
+ +R T +SRG ++++ DA A A G ++GR +N A GR ++ ++ +
Sbjct: 327 MTERDTGRSRGFGYVEYTNAVDAAKAFEAKKGAEIDGRVINLDYA--TGRPANKDQQGGF 384
Query: 152 KDK--SRCYECGDE----------GHLSYECPRNQLG 176
KD+ +R GD+ G+L ++ + +G
Sbjct: 385 KDRANARARSFGDQASPESDTLFVGNLPFDANEDSVG 421
>gi|353232427|emb|CCD79782.1| elav (embryonic lethal, abnormal vision,drosophila)-like protein
[Schistosoma mansoni]
Length = 535
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
+GGL P+ ++V NL + S+L LF FG + + ++ D K +G AF+
Sbjct: 259 TGGLTPNGWCIFVYNLSPEVEESNLWHLFGPFGAVQSIKIIYDITNNKCKGFAFVTMSNY 318
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSF 145
+A+ A +++G VL+ R + S N ++ SF
Sbjct: 319 EEAVLAIHSLNGYVLDNRILQVSFKITNNKSRSF 352
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +Y+S L + ++L LFS +G+I +L D T SRGVAFI+F +A A +
Sbjct: 76 ANLYISGLPKTMKQNELEQLFSQYGRIITARILYDNKTGISRGVAFIRFNHRYEAELAIQ 135
Query: 120 AIHGKVL 126
++G L
Sbjct: 136 QLNGYQL 142
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 71 LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130
++ ++ LFST G+I +++D+ T +S G AF+++ +A A ++G L +T
Sbjct: 1 MSQEEVRVLFSTCGQIESCKLIRDKLTGESLGYAFVKYSHSNEAQQAIHKLNGLSLQNKT 60
Query: 131 VNASIAADN 139
+ S+A N
Sbjct: 61 IKVSLARPN 69
>gi|226483627|emb|CAX74114.1| RNA-binding protein 28 [Schistosoma japonicum]
Length = 387
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA-----L 115
TV++ NL + + LH FS FG + ++KD T+ SRG AF++FV + DA L
Sbjct: 10 TVFIRNLSFDVGEDALHKFFSHFGLLEFAKIVKDPTTQHSRGTAFVKFVNVEDASNVLKL 69
Query: 116 SA-ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
SA H L RT+N ++A A + K++ +D S
Sbjct: 70 SAKPENAHQFSLENRTLNITLAVSRTEAQNLRKRKHDEDAS 110
>gi|256075727|ref|XP_002574168.1| elav (embryonic lethal abnormal vision drosophila)-like protein
[Schistosoma mansoni]
Length = 517
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
+GGL P+ ++V NL + S+L LF FG + + ++ D K +G AF+
Sbjct: 260 TGGLTPNGWCIFVYNLSPEVEESNLWHLFGPFGAVQSIKIIYDITNNKCKGFAFVTMSNY 319
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSF 145
+A+ A +++G VL+ R + S N ++ SF
Sbjct: 320 EEAVLAIHSLNGYVLDNRILQVSFKITNNKSRSF 353
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +Y+S L + ++L LFS +G+I +L D T SRGVAFI+F +A A +
Sbjct: 76 ANLYISGLPKTMKQNELEQLFSQYGRIITARILYDNKTGISRGVAFIRFNHRYEAELAIQ 135
Query: 120 AIHGKVL 126
++G L
Sbjct: 136 QLNGYQL 142
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 71 LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130
++ ++ LFST G+I +++D+ T +S G AF+++ +A A ++G L +T
Sbjct: 1 MSQEEVRVLFSTCGQIESCKLIRDKLTGESLGYAFVKYSHSNEAQQAIHKLNGLSLQNKT 60
Query: 131 VNASIAADN 139
+ S+A N
Sbjct: 61 IKVSLARPN 69
>gi|240849499|ref|NP_001155685.1| serine/arginine rich splicing factor-like [Acyrthosiphon pisum]
gi|239790824|dbj|BAH71947.1| ACYPI006902 [Acyrthosiphon pisum]
Length = 153
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G++ + + +DR TR+SRG AF++F DA A A+ G
Sbjct: 18 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDAMDG 77
Query: 124 KVLNGRTVNASIA 136
++L+GR + +A
Sbjct: 78 RMLDGRELRVQMA 90
>gi|290993156|ref|XP_002679199.1| RNA binding domain-containing protein [Naegleria gruberi]
gi|284092815|gb|EFC46455.1| RNA binding domain-containing protein [Naegleria gruberi]
Length = 763
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL + T +L LF FG+I+ + + D T+ SRGVAF+ F+ +A A +A+
Sbjct: 229 LFVYNLHFTTTEDELKELFEPFGEISELHIPIDNETKISRGVAFVHFLIPENADKAKKAL 288
Query: 122 HGKVLNGRTVNASIAAD 138
H + GR ++ + A +
Sbjct: 289 HNSIFQGRMIHIAKAKE 305
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G+ + + V N+ + T DL LFS +G++ V + K + RG AFI+FV +
Sbjct: 641 GVTVTFKKLVVRNVAFEATRQDLLQLFSAYGQVKTVRLPKKVGSNSHRGFAFIEFVSPKE 700
Query: 114 ALSAARAIHGKVLNGRTVNASIAAD 138
+A +A+ L GRT+ + D
Sbjct: 701 CHAAYQALKHSHLYGRTLKIEFSED 725
>gi|346979325|gb|EGY22777.1| RNA binding domain-containing protein [Verticillium dahliae
VdLs.17]
Length = 329
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P+ S + V NL Y LT +L LF+ G + R+ + DRA R S GVA++ + DA
Sbjct: 101 PTSSKLKVENLHYELTTEELEGLFNRIGPVVRLNLRYDRAGR-SEGVAYVTYEHPDDARQ 159
Query: 117 AARAIHGKVLNGRTVNASIAADNGRAS 143
A R G NG+ + SI NGR S
Sbjct: 160 AIREFDGANANGQPIRLSIVP-NGRDS 185
>gi|340055699|emb|CCC50020.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 590
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++VS L +T+ LH LF+ FG+I V+ + T KSRG+AF++F ++ DA A
Sbjct: 265 RSNLFVSGLHQHVTDKQLHELFAPFGEIQSAKVMLNINTGKSRGIAFVKFAKVGDAEKAM 324
Query: 119 RAIHGKVLNGRTVNASIAADNG 140
A++ + T+N +A N
Sbjct: 325 EALNNTSVFEETINVRVAKPNA 346
>gi|346468719|gb|AEO34204.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+T+ V+NL + +SDL LF FG+IAR+ + KD+ T +S+G AFI FV DA A
Sbjct: 202 ATIRVTNLSEDVRDSDLQDLFRPFGQIARIYLAKDKVTGQSKGFAFINFVHREDAARAIA 261
Query: 120 AIHG 123
++G
Sbjct: 262 NVNG 265
>gi|119608862|gb|EAW88456.1| RNA binding motif protein, X-linked, isoform CRA_b [Homo sapiens]
Length = 221
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|195109702|ref|XP_001999422.1| GI23076 [Drosophila mojavensis]
gi|193916016|gb|EDW14883.1| GI23076 [Drosophila mojavensis]
Length = 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP + S P++ + V NLDY ++N+D+ LF+ FG + + V DR+ R S G
Sbjct: 105 GPKRNSSAGNSTGPTR--LIVGNLDYGVSNTDIKELFNDFGPMKKAAVHYDRSGR-SLGT 161
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA------SSFIKKRV 150
A + F + DAL A + HG L+GR + +A + A S +K+RV
Sbjct: 162 ADVIFERRSDALKAIKQYHGVPLDGRPMTIQLAVSDVAALTRPVPSDDVKRRV 214
>gi|195498869|ref|XP_002096710.1| aly [Drosophila yakuba]
gi|194182811|gb|EDW96422.1| aly [Drosophila yakuba]
Length = 266
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP + + G GG P++ + V NLDY ++N+D+ LF+ FG + + V DR+ R S G
Sbjct: 96 GPKRGAVG-GGSGPTR--LIVGNLDYGVSNTDIKELFNDFGPMKKAAVHYDRSGR-SLGT 151
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
A + F + DAL A + HG L+GR + +A
Sbjct: 152 ADVIFERRADALKAIKQYHGVPLDGRPMTIQLA 184
>gi|427784309|gb|JAA57606.1| Putative eukaryotic translation initiation factor 3 subunit g
[Rhipicephalus pulchellus]
Length = 285
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+T+ V+NL + +SDL LF FG+IAR+ + KD+ T +S+G AFI FV DA A
Sbjct: 203 ATIRVTNLSEDVRDSDLQDLFRPFGQIARIYLAKDKVTGQSKGFAFINFVHREDAARAIA 262
Query: 120 AIHG 123
++G
Sbjct: 263 NVNG 266
>gi|347756146|ref|YP_004863709.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
gi|347588663|gb|AEP13192.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
Length = 112
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL + T+ DL FS G + V++DR T +SRG F++F D A
Sbjct: 3 LYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIEMF 62
Query: 122 HGKVLNGRTVNASIA 136
HG NGRT+ + A
Sbjct: 63 HGTEFNGRTLTVNEA 77
>gi|260803001|ref|XP_002596380.1| hypothetical protein BRAFLDRAFT_215468 [Branchiostoma floridae]
gi|229281635|gb|EEN52392.1| hypothetical protein BRAFLDRAFT_215468 [Branchiostoma floridae]
Length = 85
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +YV LD+ +T D++T FS G+I ++ DR T KSRG AF+ F A A
Sbjct: 4 RTKLYVGGLDFRMTEDDVYTAFSDHGQIVDCKLITDRETGKSRGFAFVTFSDEDSAARAE 63
Query: 119 RAIHGKVLNGRTVNASIAADNG 140
+A+ L R +N S+A G
Sbjct: 64 KALDQTELGTRVINVSVAKPQG 85
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S +++Y +LD + T + L+ LFST G + + V +D TR+S G A++ F Q DA A
Sbjct: 30 SATSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARA 89
Query: 118 ARAIHGKVLNGRTV 131
A++ +V+NG+ +
Sbjct: 90 IDALNFQVVNGKPI 103
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP +K GG + + VYV NL ++T L +F FG + V V+KD A KS+G
Sbjct: 193 GPFQKRNERGGGPTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKD-AEGKSKGF 251
Query: 104 AFIQFVQIPDALSAARAIH 122
F+ + DA +A +++
Sbjct: 252 GFVCY---EDAEAAGKSVE 267
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +Y+ NL+ + ++ L LF+ FG I V++D A SRG AF+ F +A A
Sbjct: 313 ANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDTAG-ASRGSAFVAFSSADEATRAVT 371
Query: 120 AIHGKVLNGRTVNASIA 136
++GK+ + + ++A
Sbjct: 372 EMNGKMAGQKPLYVALA 388
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ NLD + N L+ F+ FG I V D +S+G F+QF A SA +
Sbjct: 122 IFIKNLDKEIDNKALYDTFAQFGNIVSAKVATD-LQGQSKGYGFVQFDTEEGAQSAIEKV 180
Query: 122 HGKVLNGRTV 131
+G +LN + V
Sbjct: 181 NGMLLNDKQV 190
>gi|15229525|ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|20453303|gb|AAM19890.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
Length = 136
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 41 TSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
+S+GP GS L S ++V L + +S L F++FG++ TV+ DR T +S
Sbjct: 18 SSNGPVTSMLGS--LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA--SSF 145
RG F+ F A +A + + GK LNGR + ++A + A SSF
Sbjct: 76 RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSF 122
>gi|413933427|gb|AFW67978.1| hypothetical protein ZEAMMB73_339087 [Zea mays]
Length = 311
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ ++V L + L F FGK+ V ++ +R T + RG F+ F SA
Sbjct: 6 EGRIFVGGLSWQTDERKLQDAFGRFGKVVDVQIMLERHTYRHRGFGFVTFEDRRAVDSAI 65
Query: 119 RAIHGKVLNGRTVNASIA-----ADNGRASSFIKKRVYKDKSR-------CYECGDEGHL 166
+ + G+ L+GRT++ + A D+ R S + Y+ CYECG GH
Sbjct: 66 KEMRGQELDGRTISVNKAEPKMNTDDTRFDSGGGRGEYRGGRGDGPPPGNCYECGRPGHW 125
Query: 167 SYECPRNQLGPRERPMPKKL 186
+CP + G R P K
Sbjct: 126 VRDCP-SAAGGRSGRFPSKF 144
>gi|297850860|ref|XP_002893311.1| hypothetical protein ARALYDRAFT_472646 [Arabidopsis lyrata subsp.
lyrata]
gi|297339153|gb|EFH69570.1| hypothetical protein ARALYDRAFT_472646 [Arabidopsis lyrata subsp.
lyrata]
Length = 162
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VYV NLD +T +L F FG + V V R+ G AF++F DAL A R
Sbjct: 2 TRVYVGNLDPRVTERELEDEFRIFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A+ K NG V S D G +R + S+CYECG+ GH + EC
Sbjct: 57 ALDRK--NGWRVELS-HKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>gi|225427688|ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257200 [Vitis vinifera]
Length = 972
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 47 KKSKGSGGLAPSK---STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
KK+K GG A + STV+VSN Y+ TNS L FS G I R ++ + + + RG
Sbjct: 3 KKNKTEGGGARDQHCPSTVFVSNFPYSFTNSQLEETFSDVGPIRRCFMVTQKGSTEHRGF 62
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA-----------DNGRASS--FIKKRV 150
F+QF DA A +G + GR + +A +N S IK R
Sbjct: 63 GFVQFAVKEDANRAIELKNGSSIGGRKIGVKLAMHRTPLEQRRSKENQAVHSDDIIKTRT 122
Query: 151 YKDKSRCYECGDEGHLS 167
KD S E +GH S
Sbjct: 123 EKDSSS--EVVKQGHAS 137
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + + ++ FS FG++ + + T++ +G F++F
Sbjct: 512 TIFISNLPFDIDKEEVKQQFSKFGEVQSFVPVLHQVTKRPKGTGFLKF 559
>gi|221117570|ref|XP_002161458.1| PREDICTED: uncharacterized protein LOC100200042 isoform 2 [Hydra
magnipapillata]
Length = 195
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y + DL F +G++ + + +DR T +SRG AF+++ + DA A ++ G
Sbjct: 22 VDNLTYRTSMEDLERYFKKYGELGDIYIPRDRNTHESRGFAFVRYYEERDAEDAMDSMDG 81
Query: 124 KVLNGRTVNASIA 136
KV++GR + ++A
Sbjct: 82 KVIDGREIRVAMA 94
>gi|261335957|emb|CBH09290.1| putative Sr protein [Heliconius melpomene]
Length = 165
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G + + + +DR TR+SRG AF++F DA A ++ G
Sbjct: 18 VDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDRRDAEEALDSLDG 77
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR SS
Sbjct: 78 RMLDGRELRVQMAR-YGRPSS 97
>gi|296423589|ref|XP_002841336.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637573|emb|CAZ85527.1| unnamed protein product [Tuber melanosporum]
Length = 732
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ TV++ +L Y T L T FS + TV+ D T+KSRG F+ F+ DA A
Sbjct: 46 RRTVFIRSLPYTATTESLSTHFSFIAPLKHATVVADPVTKKSRGFGFVTFLDPEDAQKAV 105
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
+ +G GR + IA R ++ + V K K+
Sbjct: 106 KQFNGAEFGGRRLKVEIAEKRHRETALSEGEVKKGKT 142
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 61 TVYVSNLDYALTNSDLHTLF-STFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
TV++ NL ++ + LH F S+FG + ++ D AT + RG F+ F D
Sbjct: 322 TVFIRNLPFSTDDETLHEHFKSSFGPVRYARIVMDHATERPRGTGFVCFFNKED 375
>gi|356552596|ref|XP_003544651.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Glycine
max]
Length = 178
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD +T DL F FG I V V R+ G AFI F DA A R
Sbjct: 2 SRVYVGNLDSRVTERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDRRDAQDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
+ GK NG V ++ ++ R +CYECG+ GH + EC
Sbjct: 57 ELDGK--NGWRVE--LSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFAREC 103
>gi|294944087|ref|XP_002784080.1| RNA-binding domain protein, putative [Perkinsus marinus ATCC 50983]
gi|239897114|gb|EER15876.1| RNA-binding domain protein, putative [Perkinsus marinus ATCC 50983]
Length = 849
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+ + NL Y T D+ F FG I V VL+D ++KSRG+A++ ++ A+ A +
Sbjct: 265 LLLVNLPYIATEDDIKKAFQKFGSIEDVVVLRDEDSKKSRGMAYVTYLFPEHAVRAKAEM 324
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRC 157
HGKV GR + I A R KK V +D+ R
Sbjct: 325 HGKVFQGRVLR--IKAAQARP----KKHVERDEKRL 354
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIA--RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V N+ + + D+ LFST+G + R+ + DR+ RG AF++FV +AL+A A+
Sbjct: 737 VRNVAFEASRRDIRKLFSTYGNVVAVRMPLKVDRSGH--RGFAFVEFVSRSEALAAMEAL 794
Query: 122 HGKVLNGRTVNASIAA 137
L GR + AA
Sbjct: 795 QHTHLYGRRLVLEPAA 810
>gi|194899179|ref|XP_001979138.1| GG10124 [Drosophila erecta]
gi|190650841|gb|EDV48096.1| GG10124 [Drosophila erecta]
Length = 266
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
GP + + G GG P++ + V NLDY ++N+D+ LF+ FG + + V DR+ R S G
Sbjct: 96 GPKRGAVG-GGSGPTR--LIVGNLDYGVSNTDIKELFNDFGPMKKAAVHYDRSGR-SLGT 151
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
A + F + DAL A + HG L+GR + +A
Sbjct: 152 ADVIFERRADALKAIKQYHGVPLDGRPMTIQLA 184
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S +++YV +L+ + T + L+ LFST G + + V +D TR+S G A++ F Q DA A
Sbjct: 41 SNTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARA 100
Query: 118 ARAIHGKVLNGRTV 131
++ +V+NG+ +
Sbjct: 101 IDVLNFQVVNGKPI 114
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +Y+ NL+ + L LF FG I V++D A+ SRG AF+ F +A A
Sbjct: 324 ANLYIKNLEDGADDETLRELFKEFGTITSCRVMRD-ASGVSRGSAFVAFSSPEEATRAVT 382
Query: 120 AIHGKVLNGRTVNASIA 136
++GK++ + + ++A
Sbjct: 383 ELNGKMVGAKPLYVALA 399
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 40 VTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK 99
V GP ++ G + V+V NL +T+ +L +F FG + V + KD K
Sbjct: 200 VVYVGPFQRRAERGTTETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDE-DGK 258
Query: 100 SRGVAFIQFVQIPDALSAARAIHGK 124
S+G F+ + DA A + GK
Sbjct: 259 SKGFGFVCYETPEDASKAVEELDGK 283
>gi|449707231|gb|EMD46930.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 685
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y++NL + T D+ F FG IA + + D+ T+KS+G F+ FV DA+ A +
Sbjct: 189 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 248
Query: 122 HGKVLNGRTVNASIA 136
K + GR V+ + A
Sbjct: 249 DNKFIKGRIVHVTYA 263
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTV--LKDRATRKSRGVAFIQFVQIPDALSAA 118
T+YV N+ + + +F G++ +T+ KD+ K+ G F+++ + DA++A
Sbjct: 505 TLYVKNISFKTKEDVIRKVFEKCGRVLAITLSKTKDKKVEKNSGFGFVEYAKHEDAINAI 564
Query: 119 RAIHGKVLNGRTVNASIA 136
+ + GKV++G V I+
Sbjct: 565 KTLQGKVIDGHAVQIEIS 582
>gi|448878401|gb|AGE46163.1| arginine/serine-rich splicing factor RSZ23 transcript III
[Physcomitrella patens subsp. patens]
Length = 209
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD T +L F +G + V V RK G AFI+F DA A R
Sbjct: 2 SRVYVGNLDPRATERELEDEFRVYGVLRSVWV-----GRKPPGFAFIEFEDRRDADDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A++GK NG V S ++ G D +CYECG+ GH + EC
Sbjct: 57 ALNGK--NGWRVELSRSSGGGGGPRGRGG----DDMKCYECGEPGHFAREC 101
>gi|448878397|gb|AGE46161.1| arginine/serine-rich splicing factor RSZ23 transcript I
[Physcomitrella patens subsp. patens]
Length = 210
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD T +L F +G + V V RK G AFI+F DA A R
Sbjct: 2 SRVYVGNLDPRATERELEDEFRVYGVLRSVWV-----GRKPPGFAFIEFEDRRDADDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A++GK NG V S ++ + D +CYECG+ GH + EC
Sbjct: 57 ALNGK--NGWRVELSRSS----GGGGGPRGRGGDDMKCYECGEPGHFAREC 101
>gi|407039238|gb|EKE39532.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 697
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y++NL + T D+ F FG IA + + D+ T+KS+G F+ FV DA+ A +
Sbjct: 188 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 247
Query: 122 HGKVLNGRTVNASIA 136
K + GR V+ + A
Sbjct: 248 DNKFIKGRIVHVTYA 262
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTV--LKDRATRKSRGVAFIQFVQIPDALSAA 118
T+YV N+ + + +F G++ VT+ KD+ K+ G F+++ + DA++A
Sbjct: 517 TLYVKNISFKTKEDVIRKVFEKCGRVLAVTLSKTKDKKVEKNSGFGFVEYAKHEDAINAI 576
Query: 119 RAIHGKVLNGRTVNASIA 136
+ + GKV++G V I+
Sbjct: 577 KTLQGKVIDGHAVQIEIS 594
>gi|395743087|ref|XP_003780683.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked-like-2 [Pongo abelii]
Length = 392
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGHIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|148684930|gb|EDL16877.1| mCG114434 [Mus musculus]
Length = 153
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++S+G FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSQGFDFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ L+GR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAG 83
>gi|67479353|ref|XP_655058.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472162|gb|EAL49670.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 685
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y++NL + T D+ F FG IA + + D+ T+KS+G F+ FV DA+ A +
Sbjct: 189 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 248
Query: 122 HGKVLNGRTVNASIA 136
K + GR V+ + A
Sbjct: 249 DNKFIKGRIVHVTYA 263
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTV--LKDRATRKSRGVAFIQFVQIPDALSAA 118
T+YV N+ + + +F G++ +T+ KD+ K+ G F+++ + DA++A
Sbjct: 505 TLYVKNISFKTKEDVIRKVFEKCGRVLAITLSKTKDKKVEKNSGFGFVEYAKHEDAINAI 564
Query: 119 RAIHGKVLNGRTVNASIA 136
+ + GKV++G V I+
Sbjct: 565 KTLQGKVIDGHAVQIEIS 582
>gi|388581139|gb|EIM21449.1| hypothetical protein WALSEDRAFT_38416, partial [Wallemia sebi CBS
633.66]
Length = 866
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
ST+++SNL ++LTN L T FS G + V+ D T++S+GV ++ + DA++A+
Sbjct: 7 STLFISNLPFSLTNESLLTAFSDVGPVKSAFVVADHETKESKGVGYVTYAMREDAVAAST 66
Query: 120 AIHGKVLNG 128
++GK++ G
Sbjct: 67 EMNGKLITG 75
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
T++V N+ + T DL+ +F FGK+ V D T +SRG F+ F + DA
Sbjct: 418 TLFVRNIPFEATQEDLYDVFRKFGKLRYARVTMDYETERSRGNGFVAFWNMKDA 471
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA---TRKSRGVAFIQFVQ 110
G +S + V NL++ +T DL F FG I +T+ A + ++G F+ +
Sbjct: 212 GKVSRRSRLIVRNLNFNITRDDLKATFIPFGDIHSITLPTIEAKDGSLHNKGYGFVWYTF 271
Query: 111 IPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKD 153
DA A ++GK + T A +AA G +K++ KD
Sbjct: 272 YHDAQKAIDGMNGKSVKIATSEADVAAAGGTKKQ--RKKIAKD 312
>gi|213626875|gb|AAI70309.1| Embryonic poly(A) binding protein 2 [Xenopus laevis]
Length = 218
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K +VYV N+DY T DL FS+ G I R+T+L D+ + +G A+I+F + +++ AA
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER-NSVDAA 150
Query: 119 RAIHGKVLNGRTV 131
A+ V GRT+
Sbjct: 151 VAMDETVFRGRTI 163
>gi|372269331|ref|ZP_09505379.1| RNA-binding region RNP-1 (RNA recognition motif) [Alteromonas sp.
S89]
Length = 89
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NL Y +T+ +LH F FG+I+R TV+ DR T +S+G F++ +A A +
Sbjct: 3 IYIGNLAYGVTSDELHEAFGAFGEISRATVITDRETGRSKGFGFVEMPNDDEARKAIEEM 62
Query: 122 HGKVLNGRTV 131
+ + L+GR +
Sbjct: 63 NDQPLSGRNI 72
>gi|229485954|sp|P0C8Z4.1|RMXL3_PANTR RecName: Full=RNA-binding motif protein, X-linked-like-3
Length = 992
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G I +V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTV 131
+GK L+G+ +
Sbjct: 70 NGKYLDGKAI 79
>gi|261188230|ref|XP_002620531.1| pre-rRNA processing protein Mrd1 [Ajellomyces dermatitidis
SLH14081]
gi|239593278|gb|EEQ75859.1| pre-rRNA processing protein Mrd1 [Ajellomyces dermatitidis
SLH14081]
gi|239609317|gb|EEQ86304.1| pre-rRNA processing protein Mrd1 [Ajellomyces dermatitidis ER-3]
gi|327354414|gb|EGE83271.1| pre-rRNA processing protein Mrd1 [Ajellomyces dermatitidis ATCC
18188]
Length = 825
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y + SDL +LFS FGKI V V D KS+G A++Q+ A+ A + +
Sbjct: 299 LFVRNLLYNASESDLESLFSPFGKIDEVHVAFDTRHSKSKGFAYVQYADPEAAIQAFKTL 358
Query: 122 HGKVLNGRTVN 132
GKV GR ++
Sbjct: 359 DGKVFQGRLLH 369
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
LA + + + NL + T D+ LFS +GK+ V V + + +RG AF FV +A
Sbjct: 697 LAMRGTKILIKNLPFQATKKDIRNLFSAYGKLRSVRVPQ-KFDGTARGFAFADFVSAREA 755
Query: 115 LSAARAIHGKVLNGRTVNASIAADNG 140
+A A+ L GR + A++
Sbjct: 756 ENAMDALKNTHLLGRRLVLDFASEEA 781
>gi|443896055|dbj|GAC73399.1| transcriptional coactivator CAPER [Pseudozyma antarctica T-34]
Length = 662
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+++ +YV +L ++LT+ ++ +F FG+I V + ++ T KS+G FIQF DA A
Sbjct: 412 TEARLYVGSLHFSLTDENVKAVFEPFGEIEYVDLHREPGTGKSKGFCFIQFKHADDARKA 471
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFI 146
A++G L GR + G SS++
Sbjct: 472 HEAMNGFELAGRAIRVGNVNAKGSGSSYM 500
>gi|147899481|ref|NP_001084418.1| embryonic polyadenylate-binding protein 2-B [Xenopus laevis]
gi|82238228|sp|Q6TY21.1|EPA2B_XENLA RecName: Full=Embryonic polyadenylate-binding protein 2-B;
Short=Embryonic poly(A)-binding protein 2-B;
Short=XePABP2-B; Short=ePABP-2B; Short=ePABP2-B;
AltName: Full=Embryonic poly(A)-binding protein type
II-B
gi|38641399|gb|AAR26263.1| embryonic poly(A) binding protein 2 [Xenopus laevis]
Length = 218
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K +VYV N+DY T DL FS+ G I R+T+L D+ + +G A+I+F + +++ AA
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER-NSVDAA 150
Query: 119 RAIHGKVLNGRTV 131
A+ V GRT+
Sbjct: 151 VAMDETVFRGRTI 163
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V+V +L ++ D+ F+ FGKI+ V++D AT KS+G FI F+ DA SA + +
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVRDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGP 177
+G+ L GR + + A R S K S+ HLSYE NQ P
Sbjct: 159 NGQWLGGRQIRTNWAT---RKPSAPKSNNEGASSK--------HLSYEEVLNQSSP 203
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
+PS TVY + L++ + FS FG+I + V + +G +F++F A
Sbjct: 202 SPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFDSHEGAA 255
Query: 116 SAARAIHGKVLNGRTV 131
A +++G + G TV
Sbjct: 256 HAIVSVNGTCIEGHTV 271
>gi|213623852|gb|AAI70311.1| LOC403372 protein [Xenopus laevis]
Length = 218
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K +VYV N+DY T DL FS+ G I R+T+L D+ + +G A+I+F + +++ AA
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAA 150
Query: 119 RAIHGKVLNGRTV 131
A+ V GRT+
Sbjct: 151 VAMDETVFRGRTI 163
>gi|168020731|ref|XP_001762896.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686005|gb|EDQ72397.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 274
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 45 PHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
P +G+GG + + +Y+SNLD+ ++N D+ LF G + R ++ DR+ R S+G A
Sbjct: 87 PSASVRGTGGNIETGTKLYISNLDHGVSNDDIKELFGEVGDLKRCSINYDRSGR-SKGTA 145
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
+ F + PDA++A R + L+G+ + + N
Sbjct: 146 EVVFTRKPDAVNAMRRYNNVQLDGKPMKIEMIGTN 180
>gi|302780311|ref|XP_002971930.1| hypothetical protein SELMODRAFT_172546 [Selaginella moellendorffii]
gi|300160229|gb|EFJ26847.1| hypothetical protein SELMODRAFT_172546 [Selaginella moellendorffii]
Length = 173
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 33/153 (21%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++ L ++ T+ L T F +G I V+ DR T +SRG F+ F +A R +
Sbjct: 7 CFIGGLSWSTTDRSLETAFRPYGSIIEAKVVFDRETNRSRGFGFVTFEDEESMENAIRKM 66
Query: 122 HGKVLNGRTVNASIA---------------------ADNGRASSFIKKRVYKDKSRCYEC 160
H + L GR++ S A + C++C
Sbjct: 67 HNQELEGRSITVSKAEPPRSGGGGGGGGGGGRDRGDRYDRDRERGGGGGGGGASGNCFKC 126
Query: 161 GDEGHLSYECPRN------------QLGPRERP 181
G++GH + +CP N + GP +RP
Sbjct: 127 GNKGHWARDCPENGGDRYGSRDSGRRSGPYDRP 159
>gi|349804063|gb|AEQ17504.1| putative cold-inducible rna-binding protein b [Hymenochirus
curtipes]
Length = 123
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L +F +G+I+ V V+KDR T++SRG F+ F DA A A+
Sbjct: 6 LFIGGLNFDTNEDGLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 65
Query: 122 HGKVLNGRTVNASIA 136
+GK ++GR + A
Sbjct: 66 NGKAVDGRQIRVDQA 80
>gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 41 TSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
+S+GP GS L S ++V L + +S L F++FG++ TV+ DR T +S
Sbjct: 18 SSNGPVTSMLGS--LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA--SSF 145
RG F+ F A +A + + GK LNGR + ++A + A SSF
Sbjct: 76 RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSF 122
>gi|225464267|ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 22 YASTGNAPANPSSSSSADVTSSGPHKKSKGSGGL-----------APS--KSTVYVSNLD 68
Y + + P + + S+ ++S GP + + L PS K+ +YVS L
Sbjct: 28 YPISLHHPPHLRTCSAPSLSSWGPFNRPRNGNDLFAVACLPSSPNQPSIPKTRLYVSGLS 87
Query: 69 YALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128
+ T L F TFG++ V ++ D+ + RG AF+++ ++ A +HGK L+G
Sbjct: 88 FRTTEESLRNAFETFGQLVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFLDG 147
Query: 129 RTVNASIA 136
R + +A
Sbjct: 148 RVIFVEVA 155
>gi|453088689|gb|EMF16729.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 175
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 38 ADVTSSGPHKK---SKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD 94
AD SGP +K G S ++V+ + L+ ++ LF +G++ + ++KD
Sbjct: 52 ADRFRSGPPRKGGDDDDEPGATNPGSNLFVTGIHPRLSEEEVSRLFEKYGQVEKCNIMKD 111
Query: 95 RATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
TR+SRG F++ V +A +A A+ G+V GRT++ A
Sbjct: 112 PHTRESRGFGFVKMVTSDEADAAKEALQGEVYEGRTLSIEKA 153
>gi|345870533|ref|ZP_08822485.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921736|gb|EGV32449.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 92
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++T+ DL T+FS FG++A V+KD+ + +S+G F+ DA +A +A+
Sbjct: 3 IYVGNLPYSVTDDDLRTIFSEFGELAAAEVIKDKFSGQSKGFGFVDMPSNSDADAAIKAL 62
Query: 122 HGKVLNGR--TVN 132
+ + GR TVN
Sbjct: 63 NESDMKGRKLTVN 75
>gi|226472060|emb|CAX77068.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472062|emb|CAX77069.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472064|emb|CAX77070.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472066|emb|CAX77071.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472072|emb|CAX77074.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
Length = 155
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VY+ +L + +L +F +G++ V V R G AF++F DA A R
Sbjct: 10 TKVYIGDLPREASERELERIFREYGRLRNVWV-----ARNPPGFAFVEFEDAADASDAVR 64
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFI-----------------KKRVYKDKSRCYECGD 162
+ G V+ G ++ R ++ + + + RCYECG+
Sbjct: 65 ELDGTVMCGVRARVELSTGKSRQKPWVRGGARNGGGRDNGPGSRRMKPFDPADRCYECGE 124
Query: 163 EGHLSYEC 170
GH +Y+C
Sbjct: 125 RGHYAYDC 132
>gi|406604132|emb|CCH44355.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 349
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
T++V L+Y +T DL FS +G++ RV V++D+ T KS+G AFI F A +A +
Sbjct: 82 TLFVGRLNYEVTEIDLQKEFSKYGEVERVRVVRDKDTSKSKGYAFILFDHDSSAKAAYKE 141
Query: 121 IHGKVLNGRTVNASI 135
+G + GR + I
Sbjct: 142 ANGLKIKGRAIITDI 156
>gi|262401189|gb|ACY66497.1| splicing factor arginine/serine-rich 7 [Scylla paramamosain]
Length = 119
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV +L + +L FS +G + V V R G AF++F + DA A R +
Sbjct: 9 VYVGDLGSGASKQELEEAFSYYGPLRNVWV-----ARNPPGFAFVEFEDVRDAEDAVRGL 63
Query: 122 HGKVLNGRTVNASIAADNGR----ASSFIKKRVYKDKSRCYECGDEGHLSYECPR 172
G+ + GR V ++ R + R + + RCYECG+ GH + +C R
Sbjct: 64 DGRTICGRRVRVELSTGKSRNRFRGPPPRRGRPFHPEDRCYECGERGHYARDCYR 118
>gi|116782406|gb|ABK22494.1| unknown [Picea sitchensis]
Length = 178
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YVS L Y T L FS+FG + T++ DR T++SRG AF+++ +A +A + +
Sbjct: 84 LYVSGLSYYTTEQSLRNAFSSFGNLVEATIVMDRVTKRSRGFAFLRYAYEEEAEAAIKGM 143
Query: 122 HGKVLNGRTV 131
HGK L+GR +
Sbjct: 144 HGKFLDGRVI 153
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P+ ST ++VSNL + T+ +L F +G + ++KD AF+ +AL
Sbjct: 74 PNASTKLHVSNLSSSCTSEELRAKFEEYGAVLECDIVKD--------YAFVHMEISAEAL 125
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
A + + G+ ++ ++ R + + +R +RCY CG EGH S ECP +Q+
Sbjct: 126 DAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMGER-----TRCYRCGKEGHWSKECPLDQM 180
Query: 176 G 176
Sbjct: 181 A 181
>gi|302676924|ref|XP_003028145.1| hypothetical protein SCHCODRAFT_60180 [Schizophyllum commune H4-8]
gi|300101833|gb|EFI93242.1| hypothetical protein SCHCODRAFT_60180 [Schizophyllum commune H4-8]
Length = 743
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S ++V NL ++ T DL LFS G +++V + D T++S+G+A++ FV DA+ A +
Sbjct: 235 SRLFVRNLAFSCTTDDLTELFSPLGALSQVHIPVDAMTKQSKGMAYVTFVNPEDAVKAYQ 294
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFI--KKRVYKDKSRC 157
+ K GR ++ A D + + KKR KD+ +
Sbjct: 295 MLDKKSFQGRILHLLPAVDRRPKAEDVTDKKRTVKDEKQA 334
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ A TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISSACTNLELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|297304609|ref|XP_001102988.2| PREDICTED: RNA-binding motif protein, X-linked-like-3-like [Macaca
mulatta]
Length = 789
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTEEKALKAEFVKYGRIINVFLMKDRETNKSRGFAFVTFESPADAKAAARDL 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKYLDGKAIKVARA 84
>gi|194741450|ref|XP_001953202.1| GF17326 [Drosophila ananassae]
gi|190626261|gb|EDV41785.1| GF17326 [Drosophila ananassae]
Length = 275
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 26 GNAPA--NPSSSSSADVTSSGPHK----KSKGSGGLAPSKSTVYVSNLDYALTNSDLHTL 79
G AP S DV S+ H +G+ G P++ + V NLDY ++N+D+ L
Sbjct: 75 GGAPGAVQKSKFPRGDVNSAWKHDMYDGPKRGAPGTGPTR--LIVGNLDYGVSNTDIKEL 132
Query: 80 FSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
F+ FG + + V DR+ R S G A + F + DAL A + HG L+GR + +A +
Sbjct: 133 FNDFGPMKKAAVHYDRSGR-SLGTADVIFERRGDALKAIKQYHGVPLDGRPMTIQLAVSD 191
>gi|402911185|ref|XP_003918220.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Papio
anubis]
Length = 719
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTDEKALKAEFVKYGRIINVLLMKDRETNKSRGFAFVTFESPADAEAAARDL 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKYLDGKAIKVAGA 84
>gi|294886537|ref|XP_002771747.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
gi|239875509|gb|EER03563.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
Length = 422
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L SDL +F +G + V +L+DR+T +SRG+AF++F IP ++A +A+
Sbjct: 16 LFVRGLPVHYPESDLRAVFEEYGMVEDVFILRDRSTMQSRGMAFVRFRDIPSGMAAIKAL 75
Query: 122 HGKVLNGRTVNASIAAD 138
+G L+ T + I D
Sbjct: 76 NGHRLSHNTSTSCIDND 92
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 30/141 (21%)
Query: 15 DDTFYYRYASTGNA----PA---NPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNL 67
DDT YY A T PA NP + +A ++KG P + V+V ++
Sbjct: 285 DDTPYYHNARTNEVQWEMPAEFRNPINVHTA--------PQTKG-----PPGANVFVFSV 331
Query: 68 DYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127
A T DL FS+FG I V+ D+ T SRG FI + +A SA RA+
Sbjct: 332 PDAWTEDDLRDHFSSFGNIVSAKVVVDKHTGLSRGYGFISY---DNAQSAGRAV------ 382
Query: 128 GRTVNASIAADNGRASSFIKK 148
+N +AA+ R IKK
Sbjct: 383 -AEMNGFVAANGRRIKVQIKK 402
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
G H + +GG + ++VS L A +L T+F FG+I V V A
Sbjct: 121 GMHGEVVATGG----DTKLFVSGLGPATQEEELRTIFEPFGRINEVHVPGPHAL-----Y 171
Query: 104 AFIQFVQIPDALSAARAIHGKV-LNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG 161
AF++F + DAL A R ++G+V + G + RA+ + + + YE G
Sbjct: 172 AFVRFAEKEDALKAIREVNGRVTVEGSQRPLEVKVAESRAAKADRNAHHHQQQHGYEGG 230
>gi|426397153|ref|XP_004064790.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 isoform 1
[Gorilla gorilla gorilla]
Length = 412
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G I +V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKYLDGKAIMVAQA 84
>gi|157823451|ref|NP_001100890.1| RNA-binding motif protein, X chromosome retrogene-like [Rattus
norvegicus]
gi|71152131|sp|P84586.1|RMXRL_RAT RecName: Full=RNA-binding motif protein, X chromosome
retrogene-like; AltName: Full=Heterogeneous nuclear
ribonucleoprotein G retrogene-like; Short=hnRNP G;
AltName: Full=RNA-binding motif protein, X chromosome
retrogene; Contains: RecName: Full=RNA-binding motif
protein, X chromosome retrogene-like, N-terminally
processed
gi|149037963|gb|EDL92323.1| RNA binding motif protein, X chromosome retrogene (predicted)
[Rattus norvegicus]
Length = 388
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|387018630|gb|AFJ51433.1| Serine/arginine-rich splicing factor 2 [Crotalus adamanteus]
Length = 221
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F DA A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G VL+GR + +A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|198426742|ref|XP_002131325.1| PREDICTED: similar to cold-inducible RNA-binding protein [Ciona
intestinalis]
Length = 167
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V+V NL Y T DL FS FG++ +V ++ DR T +SRG AF+ F + A +A + +
Sbjct: 7 VFVGNLSYDATEDDLTKRFSDFGEVEQVAIITDRDTGRSRGFAFVTFREEEGAATAIKEM 66
Query: 122 HGKVLNGRTVNA 133
H + GR+V
Sbjct: 67 HEEDFLGRSVTV 78
>gi|35505506|gb|AAH57796.1| RNA binding motif protein, X-linked-like 2 [Homo sapiens]
Length = 392
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ + L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGFNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|293346666|ref|XP_002726404.1| PREDICTED: RNA binding motif protein, X-linked-like 1 [Rattus
norvegicus]
Length = 441
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 122 HGKVLNGRTVNASIAA 137
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQAT 85
>gi|359807263|ref|NP_001241113.1| uncharacterized protein LOC100790689 [Glycine max]
gi|255625755|gb|ACU13222.1| unknown [Glycine max]
gi|255635722|gb|ACU18210.1| unknown [Glycine max]
Length = 178
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD +T DL F FG I V V R+ G AFI F DA A R
Sbjct: 2 SRVYVGNLDSRVTERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDRRDAQDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
+ GK NG V ++ ++ R +CYECG+ GH + EC
Sbjct: 57 ELDGK--NGWRV--ELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFAREC 103
>gi|255075981|ref|XP_002501665.1| predicted protein [Micromonas sp. RCC299]
gi|226516929|gb|ACO62923.1| predicted protein [Micromonas sp. RCC299]
Length = 667
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 33 SSSSSADVTSSGP----HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR 88
S + S D SSGP H S GS S VYV NL + L +F FG +
Sbjct: 5 SRNGSMDNLSSGPGSPAHGVSNGS-----QHSNVYVKNLSEDVDELTLKGVFDKFGAVES 59
Query: 89 VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASS 144
V++D +T SRG F++F+Q+ A +A + ++GKV+ G+ + A + A++
Sbjct: 60 CCVIRDVSTNSSRGFGFVKFMQVHQAEAAIKEMNGKVIRGKVLEVKFANSDSSATT 115
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NLDY +T DL F FG ++ ++ D+ T +S+G F++ DA A ++
Sbjct: 3 IYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESL 62
Query: 122 HGKVLNGRTVNASIA 136
+ LNGRT+ + A
Sbjct: 63 NDTDLNGRTIKVNEA 77
>gi|426397155|ref|XP_004064791.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 isoform 2
[Gorilla gorilla gorilla]
Length = 413
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G I +V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKYLDGKAIMVAQA 84
>gi|27545034|gb|AAO18440.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|108711831|gb|ABF99626.1| RNA recognition motif family protein [Oryza sativa Japonica Group]
Length = 885
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG +PS TV+VSNL Y ++DL +FS G + R ++ + + SRG F+QF +
Sbjct: 22 GGHSPS--TVFVSNLPYTFKSADLEAVFSEVGPVRRCFMVAPKGSETSRGFGFVQFATVK 79
Query: 113 DALSAARAIHGKVLNGRTVNASIA 136
DA + + G + GR + +A
Sbjct: 80 DAERSIQQKDGFSVAGRKIRVKLA 103
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++ NL + L+N ++ FS FGK+ + + T++ RG F++F
Sbjct: 450 TIFICNLPFDLSNEEVTERFSAFGKVESFFPVLHKLTKRPRGTGFLKF 497
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G K V V NL + +T ++ +FS G + V++ + S+G AF+ F +
Sbjct: 211 GGEGSKIRKWRVIVRNLPFKITVKEIMDMFSLAGFVWDVSIPQKSDNGTSKGFAFVSFTR 270
Query: 111 IPDA-------LSAARAIHGKVLNGRTV 131
DA SA + ++GKV+ RTV
Sbjct: 271 KQDAENVWSVPCSAIKNVNGKVVAKRTV 298
>gi|392347178|ref|XP_003749751.1| PREDICTED: RNA binding motif protein, X-linked-like 1 [Rattus
norvegicus]
Length = 446
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 122 HGKVLNGRTVNASIAA 137
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQAT 85
>gi|390480268|ref|XP_002763353.2| PREDICTED: RNA-binding motif protein, X chromosome-like [Callithrix
jacchus]
Length = 156
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|357619208|gb|EHJ71878.1| ALY [Danaus plexippus]
Length = 253
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 32 PSSSSSADVTSSGPH--------KKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTF 83
P++ + DV S+ H +K + S L + + VSNLD+ +++SD+ LFS F
Sbjct: 61 PTNYTRGDVNSTWKHDMYNDFNDRKIQRSVPLTTGPTKLLVSNLDFGVSDSDIQELFSEF 120
Query: 84 GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
G + V DR+ R S G A + F + DAL A + +G L+GR +N +A
Sbjct: 121 GILKSAAVHYDRSGR-SLGTADVLFERRADALKAMKQYNGVPLDGRAMNIQLA 172
>gi|313224640|emb|CBY20431.1| unnamed protein product [Oikopleura dioica]
Length = 248
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S + + VSNLD+ +++ D+ LF+ FG + + +L DR+ R S G A ++FV++ DA +A
Sbjct: 97 STAKLSVSNLDFGVSDEDMRELFAEFGALKKSQILYDRSGR-STGQAEVEFVRLADARTA 155
Query: 118 ARAIHGKVLNGRTVNASIAADN 139
+ L+GR +N +++ N
Sbjct: 156 METYNQVPLDGRAMNITLSGGN 177
>gi|443921112|gb|ELU40879.1| splicing factor, CC1-like family protein [Rhizoctonia solani AG-1
IA]
Length = 399
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 32 PSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTV 91
PSSS S PH S +YV +L + LT SD+ +F FG++ V +
Sbjct: 152 PSSSLHLPPGVSHPHAGSM----------QLYVGSLHFNLTESDIRQVFEPFGELDFVDL 201
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFI 146
+D AT KS+G FIQ+ + DA A + G L GR + + D G+ + I
Sbjct: 202 HRDPATGKSKGYCFIQYKRPEDARMALEQMEGFELAGRQLRVNTVHDKGQGTVRI 256
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 61 TVYVSNLDYALTNSDLHTLFST---FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+V+VS L LT DL F G + ++ DR +R+S+G+ +++F I D ++
Sbjct: 66 SVFVSQLAARLTARDLGYFFEDKLGEGAVRDARIVTDRLSRRSKGIGYVEFKNI-DLVNK 124
Query: 118 ARAIHGKVLNGRTV 131
A A+ G ++ G +
Sbjct: 125 AIALSGTIVMGLPI 138
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V +L + + LH FS F + + V+ D T +SRG F+ F + DA +A +
Sbjct: 138 IFVGDLSPEVDDESLHKFFSAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTM 197
Query: 122 HGKVLNGRTVNASIAA 137
+GKVLNGR + + A+
Sbjct: 198 NGKVLNGRAIRCNWAS 213
>gi|374253685|sp|D4AE41.1|RMXL1_RAT RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
Contains: RecName: Full=RNA binding motif protein,
X-linked-like-1, N-terminally processed
Length = 388
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ A TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPACTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|134058021|emb|CAK38250.1| unnamed protein product [Aspergillus niger]
Length = 333
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 ADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT 97
D S P + S S G + + V N+ Y +T +DL LF+ G I+ V+++ DRA
Sbjct: 69 GDRYSPSPEQHSTASSG-----AKLRVENIHYDITETDLEDLFTRIGPISNVSLVYDRAG 123
Query: 98 RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137
R S GVAF+ + I DA +A R G G+ + ++ +
Sbjct: 124 R-SEGVAFVTYTHIGDARTAIREFDGANAKGQPIRLTLIS 162
>gi|399108266|gb|AFP20557.1| RNA-binding protein [uncultured bacterium]
Length = 114
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL+Y +++L LF+ +G + V V+ DR T +S+G F++ +A +A A+
Sbjct: 5 LYVGNLNYRTNSAELEQLFAAYGTVKSVQVISDRHTGQSKGFGFVEMGSAQEAQAAMNAL 64
Query: 122 HGKVLNGR--TVN 132
+GK NGR TVN
Sbjct: 65 NGKDFNGRNLTVN 77
>gi|407860731|gb|EKG07463.1| hypothetical protein TCSYLVIO_001404 [Trypanosoma cruzi]
Length = 601
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++VS L ++T+++L+ F FG+I V+ D T KSRG+AF++F ++ +A AA
Sbjct: 236 RSNLFVSGLHASVTDNELYKHFHLFGEIESAKVMLDIHTGKSRGIAFVKFKEVANAEKAA 295
Query: 119 RAIHGKVLNGRTVNASIA 136
++ V +G T+ +A
Sbjct: 296 EEMNNSVFHGETIAVRVA 313
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + L +FS +G+I+ V V+KDR T++SRG F+ F +A A A+
Sbjct: 7 LFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFDNPDEAKDAMLAM 66
Query: 122 HGKVLNGRTVNASIA 136
+GK L+GR + A
Sbjct: 67 NGKSLDGRQIRVDQA 81
>gi|169599154|ref|XP_001793000.1| hypothetical protein SNOG_02393 [Phaeosphaeria nodorum SN15]
gi|160704547|gb|EAT90605.2| hypothetical protein SNOG_02393 [Phaeosphaeria nodorum SN15]
Length = 544
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT-RKSRGVAFIQFVQIPDALSAARA 120
+YV N+ +++T DLHT+F+ FG++ +VT+ +D +S+G F+QFV A A
Sbjct: 252 LYVGNIHFSVTEQDLHTIFAPFGELEQVTLQRDETNPARSKGYGFVQFVDPTKAKEALAE 311
Query: 121 IHGKVLNGRTVNASIAAD 138
++G L GR + + D
Sbjct: 312 MNGFELAGRQIRVGLGND 329
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K T++V + L F T G + ++KDR T +S+GV +++F D S A
Sbjct: 149 KRTIFVQQISQRALTHHLLAFFETVGPVIEAQIVKDRVTGRSKGVGYVEF---KDEESVA 205
Query: 119 RAIH--GKVLNGRTVNASIA-ADNGRAS 143
+A+ G+ L G + A + A+ RA+
Sbjct: 206 KALELTGQKLKGVPIIAQLTEAEKNRAA 233
>gi|328772333|gb|EGF82371.1| hypothetical protein BATDEDRAFT_22812 [Batrachochytrium
dendrobatidis JAM81]
Length = 365
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 47 KKSKGSGGLAPSKSTVYVS-NLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
K + S L+ STV + L T +L LFS FGKI T+++D T +SRG F
Sbjct: 99 KDDRDSKALSTDPSTVVGAFGLSLFTTELELRGLFSPFGKITHCTIIRDALTLRSRGFGF 158
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNAS 134
I F I A+ A + ++G VLN RT+ +
Sbjct: 159 ITFDTIDSAVKAQQELNGTVLNNRTMRVA 187
>gi|222626076|gb|EEE60208.1| hypothetical protein OsJ_13177 [Oryza sativa Japonica Group]
Length = 878
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG +PS TV+VSNL Y ++DL +FS G + R ++ + + SRG F+QF +
Sbjct: 22 GGHSPS--TVFVSNLPYTFKSADLEAVFSEVGPVRRCFMVAPKGSETSRGFGFVQFATVK 79
Query: 113 DALSAARAIHGKVLNGRTVNASIA 136
DA + + G + GR + +A
Sbjct: 80 DAERSIQQKDGFSVAGRKIRVKLA 103
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G K V V NL + +T ++ +FS G + V++ + S+G AF+ F +
Sbjct: 211 GGEGSKIRKWRVIVRNLPFKITVKEIMDMFSLAGFVWDVSIPQKSDNGTSKGFAFVSFTR 270
Query: 111 IPDALSAARAIHGKVLNGRTV 131
DA +A + ++GKV+ RTV
Sbjct: 271 KQDAENAIKNVNGKVVAKRTV 291
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++ NL + L+N ++ FS FGK+ + + T++ RG F++F
Sbjct: 443 TIFICNLPFDLSNEEVTERFSAFGKVESFFPVLHKLTKRPRGTGFLKF 490
>gi|218194012|gb|EEC76439.1| hypothetical protein OsI_14130 [Oryza sativa Indica Group]
Length = 878
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG +PS TV+VSNL Y ++DL +FS G + R ++ + + SRG F+QF +
Sbjct: 22 GGHSPS--TVFVSNLPYTFKSADLEAVFSEVGPVRRCFMVAPKGSETSRGFGFVQFATVQ 79
Query: 113 DALSAARAIHGKVLNGRTVNASIA 136
DA + + G + GR + +A
Sbjct: 80 DAERSIQQKDGFSVAGRKIRVKLA 103
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G K V V NL + +T ++ +FS G + V++ + S+G AF+ F +
Sbjct: 211 GGEGSKIRKWRVIVRNLPFKITVKEIMDMFSLAGFVWDVSIPQKSDNGTSKGFAFVSFTR 270
Query: 111 IPDALSAARAIHGKVLNGRTV 131
DA +A + ++GKV+ RTV
Sbjct: 271 KQDAENAIKNVNGKVVAKRTV 291
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + L+N ++ FS FGK+ + + T++ RG F++F
Sbjct: 443 TIFISNLPFDLSNEEVTERFSAFGKVESFFPVLHKLTKRPRGTGFLKF 490
>gi|168048201|ref|XP_001776556.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672147|gb|EDQ58689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD T +L F +G + V V RK G AFI+F DA A R
Sbjct: 2 SRVYVGNLDPRATERELEDEFRVYGVLRSVWV-----GRKPPGFAFIEFEDRRDADDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A++GK NG V S ++ G D +CYECG+ GH + EC
Sbjct: 57 ALNGK--NGWRVELSRSSGGGGGPRGRGG----DDMKCYECGEPGHFAREC 101
>gi|296217449|ref|XP_002755014.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Callithrix
jacchus]
Length = 394
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +A R +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAVRDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKTLDGKAIKVAQA 84
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NL + + NS L +FS GK+ V+ DR T +SRG F+ D A A+
Sbjct: 219 VYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 278
Query: 122 HGKVLNGRTVNASIAADNGRASSF 145
G+ L+GR + ++AA + SSF
Sbjct: 279 DGQSLDGRAIRVNVAAQRPKPSSF 302
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL + + L +LF G + V+ +RAT +SRG F+ I + A +
Sbjct: 126 IFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKMF 185
Query: 122 HGKVLNGRTVNASIAADNG 140
G LNGR + + AA G
Sbjct: 186 SGYELNGRVLTVNKAAPKG 204
>gi|332016673|gb|EGI57527.1| RNA and export factor-binding protein 2 [Acromyrmex echinatior]
Length = 250
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 36 SSADVTSSGPHK-----KSKGSGGLAPSKST-VYVSNLDYALTNSDLHTLFSTFGKIARV 89
+ DV S+ H K G G + + +T + VSNLD+ +++SD+ LFS FG +
Sbjct: 70 TRGDVNSAWKHDMFDGVKKVGRGAIGSAGTTKLLVSNLDFGVSDSDIQELFSEFGPLKSA 129
Query: 90 TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
V DR+ R S G A + F + DA+ A + HG L+GR +N +A
Sbjct: 130 AVHYDRSGR-SLGSADVIFERRADAIKAMKQYHGVPLDGREMNIQVA 175
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++ + DL+ FS FG + V+ DR T +S+G F++ P+A +A +
Sbjct: 5 LYVGNLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAINGL 64
Query: 122 HGKVLNGRTV 131
+G+ + GR +
Sbjct: 65 NGQAIGGRAI 74
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 48 KSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQ 107
KS+GS + ++V N+ A TN +L F FG + ++K+ AF+
Sbjct: 73 KSRGS-------TKLHVGNI--ACTNQELRAKFEEFGTVLECDIVKN--------YAFVH 115
Query: 108 FVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLS 167
++ DA+ A + G+ ++ ++ R + + D+S CY CG EGH S
Sbjct: 116 MERMEDAMEAINQLDNTAFKGKLMSVKLSTSRLRTAPGMG-----DRSGCYRCGQEGHWS 170
Query: 168 YECPRNQLG 176
ECP +Q G
Sbjct: 171 KECPLDQNG 179
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ NL T+ +L +LFS +GKIA +++K+ F+ +A A R +
Sbjct: 4 IFIGNLSPDTTSDELRSLFSQYGKIAECSIVKN--------FGFVHMDDKTEAEEAIRNL 55
Query: 122 HGKVLNGRTVNASIAADNGRASS 144
H LNG+ +N ++ R S+
Sbjct: 56 HQYELNGQPMNVELSRGKSRGST 78
>gi|317419577|emb|CBN81614.1| Splicing factor, arginine/serine-rich 2 [Dicentrarchus labrax]
Length = 228
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F+ DA A
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G +L+GR + +A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|413952875|gb|AFW85524.1| hypothetical protein ZEAMMB73_327204 [Zea mays]
Length = 138
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NLD +T +L F TFG + V V RK G AFI F DA A R +
Sbjct: 4 LYIGNLDPRVTARELEDEFRTFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S N + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELS---RNASGGRGGRDRHGGSESKCYECGETGHFAREC 102
>gi|198455576|ref|XP_001360055.2| GA10707 [Drosophila pseudoobscura pseudoobscura]
gi|198133305|gb|EAL29208.2| GA10707 [Drosophila pseudoobscura pseudoobscura]
Length = 284
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 39 DVTSSGPHKKSKGSGGLAPS----KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD 94
DV S+ H G APS + + V+NLDY ++NSD+ LF+ FG I + V D
Sbjct: 97 DVNSAWKHDMYDGPKRGAPSSGSGPTLLIVNNLDYGVSNSDIKELFNEFGPIKKAAVHYD 156
Query: 95 RATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGR------ASSFIKK 148
R+ R S G A + F + DAL A + +G L+GR + +A + AS IK
Sbjct: 157 RSGR-SLGTADVIFERRTDALKAIKQYNGVPLDGRPMTIQLAVSDVNALTRPVASGDIKH 215
Query: 149 RV 150
RV
Sbjct: 216 RV 217
>gi|195158116|ref|XP_002019940.1| GL12678 [Drosophila persimilis]
gi|194116531|gb|EDW38574.1| GL12678 [Drosophila persimilis]
Length = 284
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 39 DVTSSGPHKKSKGSGGLAPS----KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD 94
DV S+ H G APS + + V+NLDY ++NSD+ LF+ FG I + V D
Sbjct: 97 DVNSAWKHDMYDGPKRGAPSSGSGPTLLIVNNLDYGVSNSDIKELFNEFGPIKKAAVHYD 156
Query: 95 RATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGR------ASSFIKK 148
R+ R S G A + F + DAL A + +G L+GR + +A + AS IK
Sbjct: 157 RSGR-SLGTADVIFERRTDALKAIKQYNGVPLDGRPMTIQLAVSDVNALTRPVASGDIKH 215
Query: 149 RV 150
RV
Sbjct: 216 RV 217
>gi|448878399|gb|AGE46162.1| arginine/serine-rich splicing factor RSZ23 transcript II
[Physcomitrella patens subsp. patens]
Length = 137
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD T +L F +G + V V RK G AFI+F DA A R
Sbjct: 2 SRVYVGNLDPRATERELEDEFRVYGVLRSVWV-----GRKPPGFAFIEFEDRRDADDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A++GK NG V S ++ + D +CYECG+ GH + EC
Sbjct: 57 ALNGK--NGWRVELSRSS----GGGGGPRGRGGDDMKCYECGEPGHFAREC 101
>gi|449279129|gb|EMC86791.1| RNA-binding protein 4, partial [Columba livia]
Length = 250
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ A TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPACTNMELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ + ++ R + + DKS CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMRVQLSTSRLRTAPGMG-----DKSGCYRCGKEGHWSKECPVDRPG 181
>gi|297701877|ref|XP_002827924.1| PREDICTED: uncharacterized protein LOC100439801 isoform 2 [Pongo
abelii]
Length = 287
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 30 ANPSSSSSADVT-SSGPHKKSKGSGGLAP---SKSTVYVSNLDYALTNSDLHTLFSTFGK 85
A P + + D + SGP ++ G P +++ V NL Y + L +F +G+
Sbjct: 46 APPRAEDTGDSSRGSGPPLRAMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR 105
Query: 86 IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
+ V + +DR T++SRG AF++F DA A A+ G VL+GR + +A
Sbjct: 106 VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 156
>gi|313224645|emb|CBY20436.1| unnamed protein product [Oikopleura dioica]
Length = 248
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S + + VSNLD+ +++ D+ LF+ FG + + +L DR+ R S G A ++FV++ DA +A
Sbjct: 97 STAKLSVSNLDFGVSDEDMRELFAEFGALKKSQILYDRSGR-STGQAEVEFVRLADARTA 155
Query: 118 ARAIHGKVLNGRTVNASIAADN 139
+ L+GR +N +++ N
Sbjct: 156 METYNQVPLDGRAMNITLSGGN 177
>gi|42573738|ref|NP_974965.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009873|gb|AED97256.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 242
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 24 STGNAP--ANPSSSSSADVTS--SGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTL 79
ST +AP + P S+ D+ S S H+ + S G+ + + +Y+SNLDY + N D+ L
Sbjct: 47 STRSAPYQSAPESTWGHDMFSDRSEDHRSGRSSAGIE-TGTKLYISNLDYGVMNEDIKEL 105
Query: 80 FSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
F+ G++ R TV DR+ R S+G A + + + DAL+A + + L+G+ + I N
Sbjct: 106 FAEVGELKRYTVHFDRSGR-SKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTN 164
>gi|307110149|gb|EFN58385.1| hypothetical protein CHLNCDRAFT_56825 [Chlorella variabilis]
Length = 1521
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
+ NL Y LT+ D+ FS G + V ++ +R T K RG FI+F IP A SA R + G
Sbjct: 1076 LGNLSYDLTDQDVIDHFSQVGPVKHVRIVTERDTGKPRGFGFIEFFDIPTAESAIRNLSG 1135
Query: 124 KVLNGRTVNASIAADNGRASSFIKKRVYKDK 154
K GRT+ I G F R + D+
Sbjct: 1136 KDFKGRTIR--IVYAEGGPGEFRSGRDFDDQ 1164
>gi|397570464|gb|EJK47313.1| hypothetical protein THAOC_33975 [Thalassiosira oceanica]
Length = 384
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++T+ V+N+ + +DL LFS FG+I+RV + KD+ T +SRG AF+ FV DA A
Sbjct: 264 QNTLRVTNISEEASEADLQDLFSPFGRISRVYLAKDKETMQSRGFAFVSFVHREDAARAM 323
Query: 119 RAIHG 123
+ G
Sbjct: 324 DKLQG 328
>gi|345564220|gb|EGX47200.1| hypothetical protein AOL_s00097g39 [Arthrobotrys oligospora ATCC
24927]
Length = 333
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 26 GNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGK 85
G A A P S + D + GS + ++V+ + LT D+ LF +G+
Sbjct: 46 GRADARPDPSDTTDRRDKDASPEKDGSRNTG---TNLFVTGIHPRLTEEDVTRLFGKYGE 102
Query: 86 IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
I + ++ D T++SRG F+ F Q A +A A+ G+V GRT++ A
Sbjct: 103 IIKCNIMVDPHTKESRGFGFVNFAQSDQADAAKDALQGEVYEGRTLSIEKA 153
>gi|170083917|ref|XP_001873182.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650734|gb|EDR14974.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 448
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 40 VTSSGPHKKSKGSGGL-------APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVL 92
+T S +K G G L A + +YV +L + LT SD+ +F FG++ V +
Sbjct: 195 LTESERNKLHPGDGSLNLPPGVTASHGAILYVGSLHFNLTESDIKQVFEPFGELEFVDLH 254
Query: 93 KDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA 142
+D T +S+G AF+Q+ + DA A + G L GRT+ + + G A
Sbjct: 255 RDPMTGRSKGYAFVQYKRSEDARMALEQMEGFELAGRTLRVNTVHEKGTA 304
>gi|357137369|ref|XP_003570273.1| PREDICTED: serine/arginine-rich splicing factor 7-like
[Brachypodium distachyon]
Length = 189
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NLD +T +L F FG + V V RK G AFI F DA A R +
Sbjct: 4 LYVGNLDARVTAGELEDEFRVFGALRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 58
Query: 122 HGKVLNGRTV----NASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V N+S + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELSRNSSGRGGGRDGGGGGRDRHGGSESKCYECGESGHFAREC 109
>gi|356496753|ref|XP_003517230.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Glycine
max]
Length = 481
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 33 SSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVL 92
++ ++ ++ PH SG P K T++V+ L Y T S + F ++G I RV ++
Sbjct: 117 AAKAAEELEKYDPHNDPNVSGD--PYK-TLFVAKLSYETTESRIKREFESYGPIKRVRLV 173
Query: 93 KDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
D+ T K RG AFI+++ D +A + G+ ++GR V
Sbjct: 174 ADKDTNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRV 212
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NL + + NS L +FS GK+ V+ DR T +SRG F+ D A A+
Sbjct: 217 VYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 276
Query: 122 HGKVLNGRTVNASIAADNGRASSF 145
G+ L+GR + ++AA + SSF
Sbjct: 277 DGQSLDGRAIRVNVAAQRPKPSSF 300
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL + + L +LF G + V+ +RAT +SRG F+ I + A +
Sbjct: 124 IFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKMF 183
Query: 122 HGKVLNGRTVNASIAADNG 140
G LNGR + + AA G
Sbjct: 184 SGYELNGRVLTVNKAAPKG 202
>gi|256421371|ref|YP_003122024.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256036279|gb|ACU59823.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 108
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+YV+NL Y L ++DLH +FS FG++ ++KD T +SRG F++ + A +
Sbjct: 2 NIYVANLHYRLNDADLHQIFSEFGEVTSAKIIKDHETGRSRGFGFVEMPNQEEGSKAMDS 61
Query: 121 IHGKVLNGRTV 131
++G + G+ +
Sbjct: 62 LNGTEIEGKQL 72
>gi|29841408|gb|AAP06440.1| similar to NM_006276 splicing factor, arginine/serine-rich 7
[Schistosoma japonicum]
gi|226472076|emb|CAX77076.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472078|emb|CAX77077.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472080|emb|CAX77078.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472082|emb|CAX77079.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472084|emb|CAX77080.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
Length = 169
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VY+ +L + +L +F +G++ V V R G AF++F DA A R
Sbjct: 10 TKVYIGDLPREASERELERIFREYGRLRNVWV-----ARNPPGFAFVEFEDAADASDAVR 64
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFI-----------------KKRVYKDKSRCYECGD 162
+ G V+ G ++ R ++ + + + RCYECG+
Sbjct: 65 ELDGTVMCGVRARVELSTGKSRQKPWVRGGARNGGGRDNGPGSRRMKPFDPADRCYECGE 124
Query: 163 EGHLSYEC 170
GH +Y+C
Sbjct: 125 RGHYAYDC 132
>gi|327279534|ref|XP_003224511.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Anolis
carolinensis]
Length = 231
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KD+ T++SRG FI F A
Sbjct: 80 MSSEEGKLFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANPEHA 139
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ ++GR + A
Sbjct: 140 SDAMRAMNGESVDGRQIRVDHAG 162
>gi|238014210|gb|ACR38140.1| unknown [Zea mays]
gi|414873814|tpg|DAA52371.1| TPA: glycine-rich RNA-binding protein 8 isoform 1 [Zea mays]
gi|414873815|tpg|DAA52372.1| TPA: glycine-rich RNA-binding protein 8 isoform 2 [Zea mays]
gi|414873816|tpg|DAA52373.1| TPA: glycine-rich RNA-binding protein 8 isoform 3 [Zea mays]
Length = 205
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 26/136 (19%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++ NL ++ T+ L FS FG + V+ D+ + +SRG F+ F + A +
Sbjct: 9 CFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEGM 68
Query: 122 HGKVLNGRTVNASIAADNG--------------RASSFIKKRVYKDKSR----------- 156
+G L+GR + A G R S + + R Y
Sbjct: 69 NGLDLDGRNITVDKAQPQGPGRDRNGDRDYDRERGSRYERGRDYGGGRAPRGGGGGGGGG 128
Query: 157 -CYECGDEGHLSYECP 171
C++CG GH + ECP
Sbjct: 129 DCFKCGKPGHFARECP 144
>gi|261859212|dbj|BAI46128.1| RNA binding motif protein, X-linked-like 2 [synthetic construct]
Length = 392
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +A R +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAVRDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|241952250|ref|XP_002418847.1| cytoplasmic RNA-binding protein, putative [Candida dubliniensis
CD36]
gi|223642186|emb|CAX44153.1| cytoplasmic RNA-binding protein, putative [Candida dubliniensis
CD36]
Length = 163
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+VYV N+DY T L F G I RVT+L DR + +G A+I+F Q A
Sbjct: 29 SVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAIDE 88
Query: 121 IHGKVLNGRTVNASIAADN 139
+HGK GR + + N
Sbjct: 89 LHGKEFRGRELRVTAKRTN 107
>gi|68482858|ref|XP_714655.1| hypothetical protein CaO19.8967 [Candida albicans SC5314]
gi|46436241|gb|EAK95607.1| hypothetical protein CaO19.8967 [Candida albicans SC5314]
gi|238883823|gb|EEQ47461.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 163
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+VYV N+DY T L F G I RVT+L DR + +G A+I+F Q A
Sbjct: 29 SVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAIDE 88
Query: 121 IHGKVLNGRTVNASIAADN 139
+HGK GR + + N
Sbjct: 89 LHGKEFRGRELRVTAKRTN 107
>gi|198438021|ref|XP_002129706.1| PREDICTED: similar to cold inducible RNA binding protein [Ciona
intestinalis]
Length = 469
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ LD + DL F FG I++V VL+DR T SRG AF+ F A A R +
Sbjct: 10 IFIGGLDLDCSEQDLEKAFGMFGDISQVMVLRDRETNVSRGFAFMSFESQDSADEAIRRM 69
Query: 122 HGKVLNGRTVNASIA 136
HG + GR V A
Sbjct: 70 HGVEIMGRCVTVRKA 84
>gi|297833586|ref|XP_002884675.1| hypothetical protein ARALYDRAFT_317651 [Arabidopsis lyrata subsp.
lyrata]
gi|297330515|gb|EFH60934.1| hypothetical protein ARALYDRAFT_317651 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L ++ L FS+FG++A V + D+ + +SRG F+ F + DALSA A+
Sbjct: 42 LFIGGLSCSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 101
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDK 154
GK L GR + S A + R + R+ K K
Sbjct: 102 DGKGLLGRPLRISFALERVRGGPVVVPRLGKSK 134
>gi|8927581|gb|AAF82129.1|AF279289_1 testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo
sapiens]
Length = 386
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +A R +
Sbjct: 4 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAVRDM 63
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 64 NGKSLDGKAIKVAQA 78
>gi|283779286|ref|YP_003370041.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
gi|283437739|gb|ADB16181.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
Length = 100
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + N L LFS FG + V++DR T +S+G F++ A SA +A+
Sbjct: 5 LYVGNLSYDVNNQSLEELFSQFGAVRSAQVIQDRETGRSKGFGFVEMQDDNAARSAIQAL 64
Query: 122 HGKVLNGR--TVN 132
H K NGR TVN
Sbjct: 65 HEKQHNGRPLTVN 77
>gi|75076898|sp|Q4R813.1|HNRGT_MACFA RecName: Full=RNA-binding motif protein, X-linked-like-2; AltName:
Full=Testis-specific heterogeneous nuclear
ribonucleoprotein G-T; Short=hnRNP G-T
gi|67968804|dbj|BAE00759.1| unnamed protein product [Macaca fascicularis]
Length = 394
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F +A +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|374314656|ref|YP_005061084.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350300|gb|AEV28074.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV N+ Y T DL LFS +G + T++ DR TR+ +G F++ + A +A +
Sbjct: 5 IYVGNMSYNTTEDDLRELFSQYGNVLSATIIMDRETRRPKGFGFVEMEENSAADAAISQL 64
Query: 122 HGKVLNGRT--VNASIA 136
GK ++GR VN +IA
Sbjct: 65 DGKEIDGRNLRVNEAIA 81
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
L P S V++ L T DL L +FG+I V ++KD+ T++++G AF+ F A
Sbjct: 99 LPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAA 158
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
A +H K GRT+ S++
Sbjct: 159 QRAIEELHDKEHKGRTLRCSLS 180
>gi|298709686|emb|CBJ31492.1| RNP-1 like RNA-binding protein [Ectocarpus siliculosus]
Length = 262
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V +SNLDY+LT +D+ T G +A V ++K + S+G F+ F Q A A +
Sbjct: 98 VMISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETL 157
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKD-KSRCYECGDEGHLSYECPRNQLGPRER 180
+GK LNGR V A + +K+ +D + RC E ++ + PR RE
Sbjct: 158 NGKELNGRVVELKPAITSREKR---RKQALRDWEQRCLE--EDRRVEQGYPR-----REV 207
Query: 181 PMPKKLRRRSDGEDESEF 198
P+P+K + G EF
Sbjct: 208 PLPEKKKMADFGVTVDEF 225
>gi|440791603|gb|ELR12841.1| splicing factor, CC1like subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 594
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
AP++ +YV NL L DL T+F FG I ++ + D T +S+G AF+Q+ DA
Sbjct: 269 APTR--LYVGNLHTDLAEDDLRTVFEPFGDIQQINLHIDPETGRSKGFAFVQYKSPEDAK 326
Query: 116 SAARAIHGKVLNGRTVNASIAADNG 140
A + +G L GR + I +D G
Sbjct: 327 KALQHCNGMELAGRQLKVGIVSDPG 351
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
TV+ SNL + S+L F GK+ + ++ DR +RKS+G +I+++ A
Sbjct: 170 TVFASNLPIRASESELFEFFGKAGKVHDIRLITDRNSRKSKGFGYIEYLDKSSVPLALHQ 229
Query: 121 IHGKVLNGRTVNASI 135
++G G+TV I
Sbjct: 230 LNGTQCKGQTVLVQI 244
>gi|209877356|ref|XP_002140120.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209555726|gb|EEA05771.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 206
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 22 YASTGNAPANPSSSSSADVTS----SGPHKKSKGSGGLAPS--KSTVYVSNLDYALTNSD 75
+AS+ +APA S ++ + PH+ + G + K ++Y+ N+DY ++
Sbjct: 22 FASSPSAPAVVSDVKISNTENFDDIQKPHENMETEGPIDDDEIKRSIYIGNVDYGTKPTE 81
Query: 76 LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
L LF + G I R+T++ D+ T +G A+++F + P+A+ A G + GR +
Sbjct: 82 LQELFKSCGSINRITIMNDKRTGMPKGFAYLEFCE-PEAVDTALKFDGAMFRGRQI 136
>gi|410929633|ref|XP_003978204.1| PREDICTED: uncharacterized protein LOC101070858 [Takifugu rubripes]
Length = 229
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F+ DA A
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G +L+GR + +A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
Length = 110
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y++ +SDL F FG + V+ +R T +S+G F++ P+A +A +
Sbjct: 5 LYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAINGM 64
Query: 122 HGKVLNGRTV 131
+G+ L GR++
Sbjct: 65 NGQPLGGRSI 74
>gi|307111065|gb|EFN59300.1| hypothetical protein CHLNCDRAFT_7238, partial [Chlorella
variabilis]
Length = 556
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y+ T ++L LF +G ++ V ++ DRA++KS+G A +QF DA+ A +
Sbjct: 20 LFVRNLPYSATEAELQALFEGYGDVSEVHLVLDRASKKSKGFALVQFADPQDAVKAHAEL 79
Query: 122 HGKVLNGRTVN 132
+ GR ++
Sbjct: 80 DASIFQGRLIH 90
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 49 SKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK----SRGVA 104
S G + P V V N+ + T D+ LF+ FG + R RK RG A
Sbjct: 457 STGGAAVLPDTCKVVVRNVAFEATRKDIMGLFTPFGHVNSC-----RLPRKFDGTHRGFA 511
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNG 140
F+ F +A +A A+ G L GR + A + G
Sbjct: 512 FVDFATKQEARNAMEAVQGAHLYGRRLVLEWAEEEG 547
>gi|116787469|gb|ABK24519.1| unknown [Picea sitchensis]
Length = 169
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD +T +L F +G + V V RK G AFI+F DA A R
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRVYGVLRSVWV-----ARKPPGFAFIEFEDRRDAGDAVR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A++GK N V S N + D CY+CG+ GH + EC
Sbjct: 57 ALNGK--NDWRVELS---RNSGGGGRGGRGRGGDDMSCYKCGESGHFAREC 102
>gi|294883272|ref|XP_002770538.1| hypothetical protein Pmar_PMAR013164 [Perkinsus marinus ATCC 50983]
gi|239873961|gb|EER02695.1| hypothetical protein Pmar_PMAR013164 [Perkinsus marinus ATCC 50983]
Length = 182
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+ + NL Y T D+ F FG I V VL+D ++KSRG+A++ ++ A+ A +
Sbjct: 6 LLLVNLPYIATEDDIKKAFQKFGSIEDVVVLRDEDSKKSRGMAYVTYLFPEHAVRAKAEM 65
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRC 157
HGKV GR + I A R KK V +D+ R
Sbjct: 66 HGKVFQGRVLR--IKAAQARP----KKHVERDEKRL 95
>gi|392592926|gb|EIW82252.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 197
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
A +VYV N+DY T ++ F G I RVT+L D+ T +G A+++F + PD +
Sbjct: 79 AADSRSVYVGNVDYGATPEEIQAHFQACGTINRVTILCDKFTGHPKGFAYVEFAE-PDFI 137
Query: 116 SAARAIHGKVLNGRTVNAS 134
AA A+ + GR + +
Sbjct: 138 DAALAMDNSLFRGRLIKVT 156
>gi|389609107|dbj|BAM18165.1| serine/arginine rich splicing factor [Papilio xuthus]
Length = 151
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G + + + +DR TR+SRG AF++F DA A ++ G
Sbjct: 6 VDNLTYRTTAEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFFDRRDAEDALDSLDG 65
Query: 124 KVLNGRTVNASIAADNGRASS 144
++L+GR + +A GR SS
Sbjct: 66 RMLDGRELRVQMAR-YGRPSS 85
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +YV NL Y++T+ L + FS FG++ V+ DR T +S+G AF++ A +A
Sbjct: 29 SKIYVGNLPYSVTDDSLQSNFSEFGEVTSAKVMMDRDTGRSKGFAFVEMSTPAFAQAAID 88
Query: 120 AIHGKVLNGRTVNASIA 136
++G+ ++GR++ ++A
Sbjct: 89 GLNGQSVDGRSIVVNLA 105
>gi|448878292|gb|AGE46109.1| arginine/serine-rich splicing factor RSZ19 transcript I [Sorghum
bicolor]
Length = 163
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VYV NLD +T+ +L F FG + V V RK G AFI F DA A R
Sbjct: 2 ACVYVGNLDARVTSGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAEDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
+ GK NG V S + + R +S+CYECG+ GH + EC
Sbjct: 57 DLDGK--NGWRVELS----RNSSGRGGRDRYGGSESKCYECGETGHFAREC 101
>gi|440789720|gb|ELR11019.1| RNA binding protein, putative [Acanthamoeba castellanii str. Neff]
Length = 838
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL ++ + DL+ LF G I+ V + DR T+K RG+A++ F+ A A A+
Sbjct: 329 LFVRNLPFSASEDDLYKLFKKHGDISEVHIPIDRETKKPRGMAYVTFMLPEVAAQAHAAL 388
Query: 122 HGKVLNGRTVNASIA----------ADNGRASSFIKKRVYKDK 154
G + GR ++ A D+G A+SF KK+ K K
Sbjct: 389 DGSIFQGRLLHIMPAKMAPVRPAPEKDDGEATSFRKKKEQKLK 431
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK-----SRGVAFIQFVQIPDA 114
+T+YV NL++ T+ L T+F + VTV K + +K S G F++FV+ A
Sbjct: 637 TTLYVKNLNFKTTDDGLRTMFEKVAPVRSVTVAKRKDVKKGGQMISLGYGFVEFVKRDGA 696
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
L A + + GK L+ + + A
Sbjct: 697 LKAIKQLQGKQLDNHALEITFA 718
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 41 TSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
T +K+ G T+ V N+ + T +++ LF+TFG++ V V K R +
Sbjct: 726 TKQQSNKRKAAQGTQMKPTCTILVKNVAFEATKAEIRELFATFGQLKSVRVPKKMDGR-A 784
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGR 129
RG AF+ F+ +A +A +++ L GR
Sbjct: 785 RGFAFVDFITKQEAKNAFQSLQDTHLYGR 813
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
L P S V++ L T DL L +FG+I V ++KD+ T++++G AF+ F A
Sbjct: 102 LPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKDAA 161
Query: 115 LSAARAIHGKVLNGRTVNASIA 136
A +H K GRT+ S++
Sbjct: 162 QRAIEELHDKEHKGRTLRCSLS 183
>gi|406946237|gb|EKD77506.1| glycine-rich RNA-binding protein [uncultured bacterium]
Length = 113
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S+S +YV NL Y T +L FS FG I + ++ D T +S+G FI + I D SA
Sbjct: 2 SQSKIYVGNLSYNTTEDELRDYFSQFGNIEDIKLIIDFNTGRSKGFGFITYASIQDCESA 61
Query: 118 ARAIHGKVLNGRTVNASIAADN 139
+G + GR + +IA D+
Sbjct: 62 VTTANGVDMGGRKLKVNIARDD 83
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + ++DL FS FG +A V+ +R T +S+G F++ +A +A + +
Sbjct: 5 LYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGM 64
Query: 122 HGKVLNGRTV 131
+G+ L GR++
Sbjct: 65 NGQPLGGRSL 74
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + ++DL FS FG +A V+ +R T +S+G F++ +A +A + +
Sbjct: 5 LYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGM 64
Query: 122 HGKVLNGRTV 131
+G+ L GR++
Sbjct: 65 NGQPLGGRSL 74
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + + L FS +G IA+V V++DR T++SRG F+ F DA A A+
Sbjct: 7 LFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAM 66
Query: 122 HGKVLNGRTV 131
+GK ++GR +
Sbjct: 67 NGKSVDGRMI 76
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|67592644|ref|XP_665658.1| poly(A) binding protein II [Cryptosporidium hominis TU502]
gi|54656446|gb|EAL35428.1| poly(A) binding protein II [Cryptosporidium hominis]
Length = 263
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K ++Y+ N+DY ++L LF + G I R+T++ D+ T +G A+++F + P+A+ A
Sbjct: 110 KRSIYIGNVDYGTKLTELQDLFKSCGSINRITIMNDKRTGMPKGFAYLEFCE-PEAVETA 168
Query: 119 RAIHGKVLNGRTVNAS 134
G + GR + S
Sbjct: 169 LKFDGAMFRGRQIKVS 184
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|390363490|ref|XP_001186141.2| PREDICTED: putative RNA-binding protein EEED8.10-like
[Strongylocentrotus purpuratus]
Length = 847
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 15 DDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNS 74
DDT R S G+ P+N S +V S +K +YVSN++Y +
Sbjct: 61 DDTLDIRRNSDGDGPSN-GSLRDDEVHRSDENK--------------IYVSNINYQVRRG 105
Query: 75 DLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNGRTVNA 133
+L FS FG + RV +L DR ++SRG+AF+ F + DA A A ++ L+GR +
Sbjct: 106 ELKDFFSYFGHVTRVNLLTDRNRKRSRGLAFVTFSKRKDAERAKSASDYELTLDGRVMKC 165
Query: 134 S 134
S
Sbjct: 166 S 166
>gi|328865553|gb|EGG13939.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 949
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S +Y+ N+ + LT +D+ FS FG I +++ KD AT +SRG FI++ A++A
Sbjct: 602 QSRIYIGNIHFNLTEADIVAAFSPFGPIKSLSLSKDPATGRSRGFCFIEYTYPEAAINAI 661
Query: 119 RAIHGKVLNGRTV 131
+ ++ K ++GR +
Sbjct: 662 QNMNQKTISGRQI 674
>gi|242066788|ref|XP_002454683.1| hypothetical protein SORBIDRAFT_04g035540 [Sorghum bicolor]
gi|241934514|gb|EES07659.1| hypothetical protein SORBIDRAFT_04g035540 [Sorghum bicolor]
gi|448878294|gb|AGE46110.1| arginine/serine-rich splicing factor RSZ19 transcript II [Sorghum
bicolor]
Length = 163
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T+ +L F FG + V V RK G AFI F DA A R +
Sbjct: 4 VYVGNLDARVTSGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S + + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELS----RNSSGRGGRDRYGGSESKCYECGETGHFAREC 101
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|115455989|ref|NP_001051595.1| Os03g0801800 [Oryza sativa Japonica Group]
gi|108711601|gb|ABF99396.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550066|dbj|BAF13509.1| Os03g0801800 [Oryza sativa Japonica Group]
gi|215695092|dbj|BAG90283.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625982|gb|EEE60114.1| hypothetical protein OsJ_12988 [Oryza sativa Japonica Group]
Length = 959
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S STV+VSNL Y +SDL +FS G + R ++ + + SRG F+QF + DA +
Sbjct: 32 SPSTVFVSNLPYTFKSSDLEAVFSEVGPVRRCFMVAPKGSETSRGFGFVQFATVQDAERS 91
Query: 118 ARAIHGKVLNGRTVNASIA 136
+ G + GR + +A
Sbjct: 92 IQQKDGFSVAGRKIRVKLA 110
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G K V V NL + +T ++ +FS G I V++ + S+G AF+ F +
Sbjct: 293 GGEGSKIRKWRVIVRNLPFKITVKEIMDIFSLAGFIWDVSIPQKSDDGASKGFAFVSFTR 352
Query: 111 IPDALSAARAIHGKVLNGRTV 131
DA +A + ++GKV+ RTV
Sbjct: 353 KQDAENAIKNVNGKVVAKRTV 373
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + L+N ++ FS FGK+ + + T++ RG F++F
Sbjct: 523 TLFISNLPFDLSNEEVTERFSAFGKVESFFPVLHKLTKRPRGTGFLKF 570
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|397467532|ref|XP_003805466.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Pan
paniscus]
Length = 393
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G I +V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTV 131
+GK L+G+ +
Sbjct: 70 NGKYLDGKAI 79
>gi|119492303|ref|ZP_01623650.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119453188|gb|EAW34355.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 101
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++YV NL Y +T DL ++F+ +G + RV++ DR T + RG AF++ + +A A
Sbjct: 2 SIYVGNLSYEVTEEDLKSVFAEYGTVQRVSIPTDRETGRPRGFAFVEMQEESKEDAAIEA 61
Query: 121 IHGKVLNGRTVNASIAADNGRASSF 145
+ G GR + + A + SSF
Sbjct: 62 LDGAEWMGRDLKVNKARPREKRSSF 86
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|348544446|ref|XP_003459692.1| PREDICTED: hypothetical protein LOC100710640 [Oreochromis
niloticus]
Length = 227
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F+ DA A
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G +L+GR + +A
Sbjct: 74 AMDGALLDGRELRVQMA 90
>gi|298248948|ref|ZP_06972752.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297546952|gb|EFH80819.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 96
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y +T+ +L F+ G++ RV V+ +R T +S+G F+ + DA +A +
Sbjct: 3 LYVGNLSYRITDQELGDFFAQIGRVQRVRVVTERETGRSKGFGFVDMLNEQDARAAIEQL 62
Query: 122 HGKVLNGRTVNASIAAD 138
+GK L GR + + A +
Sbjct: 63 NGKRLGGRALTVAEARE 79
>gi|168001864|ref|XP_001753634.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695041|gb|EDQ81386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 168
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K+T+YV L+ +T +H F FG + +++ D+AT+K RG AFI + + DA +A
Sbjct: 6 KTTLYVGGLEENVTEQVVHAAFIPFGDVKDISMPLDQATQKHRGFAFITYFEKEDAAAAM 65
Query: 119 RAIHGKVLNGRTVNASIAADN---GRASSFIKKRVYKDKSRCYE 159
+H L GR + + A G + + V+ D +E
Sbjct: 66 DNMHNGELYGRVLTVNYAQPQKIKGGEQGWASQAVWADADTWFE 109
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL +++T+S L +F+ G +A V ++ DR T +SRG AF+ + +A A R
Sbjct: 111 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 170
Query: 122 HGKVLNGRTV 131
G + GRTV
Sbjct: 171 DGSQVGGRTV 180
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G S +YV+NL +ALT+ L F+ V+ DR++ +SRG FI F
Sbjct: 206 GFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEA 265
Query: 114 ALSAARAIHGKVLNGRTVNASIAADNGRASS 144
SA ++ L GR + ++A SS
Sbjct: 266 MKSALDTMNEVELEGRPLRLNVAGQKAPLSS 296
>gi|116626576|ref|YP_828732.1| RNP-1 like RNA-binding protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229738|gb|ABJ88447.1| RNP-1 like RNA-binding protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 116
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NLD+A T S + +LF +G + RV ++ DR T +SRG AF++ +A A A+
Sbjct: 4 IFVGNLDFAATESSIRSLFEPYGSVDRVNLVTDRDTGRSRGFAFVEMTDAAEADRAIAAL 63
Query: 122 HGKVLNGRTVNASIA 136
+G L+GR +N + A
Sbjct: 64 NGHELDGRALNINEA 78
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|440793396|gb|ELR14581.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 964
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 40 VTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK 99
+ ++ P + G P ++ +++ NL T+ DL LFS G I R V+ + RK
Sbjct: 15 IATAEPPAPAGGKKAREPKRTKIFLRNLSEDTTSMDLEELFSDVGPIRRAFVITKKGERK 74
Query: 100 SRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
G ++QFV DA +A R GK G V +A
Sbjct: 75 CSGQGYVQFVMESDAAAAVRQYSGKPFKGSRVLIEVA 111
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
+T+++ NL + T DL F+ FG+I ++KD+ T +RG AF+QF +
Sbjct: 492 TTLFIRNLPFGATVQDLRAKFAEFGRIRYCALVKDKVTGMARGSAFLQFAE 542
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+ + NL + T +DL F+ GK+ V + K++ T RG F++F +A +A +
Sbjct: 287 LIIRNLPFQATEADLSEKFAAHGKLVDVIIPKNKETGNPRGFGFVEFFTKEEAANALEKV 346
Query: 122 HGKVLNGRTV 131
+ + + GR V
Sbjct: 347 NAQPIRGRRV 356
>gi|344270020|ref|XP_003406844.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Loxodonta africana]
Length = 477
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++ L L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 96 LFTGGLHTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESSADAKDAARDM 155
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 156 NGKSLDGKAIKVEQA 170
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|29150367|gb|AAO72376.1| putative RNA binding ribonucleoprotein [Oryza sativa Japonica
Group]
Length = 975
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S STV+VSNL Y +SDL +FS G + R ++ + + SRG F+QF + DA +
Sbjct: 32 SPSTVFVSNLPYTFKSSDLEAVFSEVGPVRRCFMVAPKGSETSRGFGFVQFATVQDAERS 91
Query: 118 ARAIHGKVLNGRTVNASIA 136
+ G + GR + +A
Sbjct: 92 IQQKDGFSVAGRKIRVKLA 110
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V V NL + +T ++ +FS G I V++ + S+G AF+ F + DA +A + +
Sbjct: 320 VIVRNLPFKITVKEIMDIFSLAGFIWDVSIPQKSDDGASKGFAFVSFTRKQDAENAIKNV 379
Query: 122 HGKVLNGRTV 131
+GKV+ RTV
Sbjct: 380 NGKVVAKRTV 389
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + L+N ++ FS FGK+ + + T++ RG F++F
Sbjct: 539 TLFISNLPFDLSNEEVTERFSAFGKVESFFPVLHKLTKRPRGTGFLKF 586
>gi|448522951|ref|XP_003868821.1| hypothetical protein CORT_0C05430 [Candida orthopsilosis Co 90-125]
gi|380353161|emb|CCG25917.1| hypothetical protein CORT_0C05430 [Candida orthopsilosis]
Length = 178
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++YV N+DY T L F G I RVT+L D+ + +G A+++F +I A
Sbjct: 35 SIYVGNVDYQSTPEQLEEFFHVVGVIERVTILFDKYSGLPKGYAYVEFEKIESVNKAVED 94
Query: 121 IHGKVLNGRTVNAS 134
+HGK GR V +
Sbjct: 95 LHGKEFRGREVRVT 108
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + + L FS +G IA+V V++DR T++SRG F+ F DA A A+
Sbjct: 7 LFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAM 66
Query: 122 HGKVLNGRTV 131
+GK ++GR +
Sbjct: 67 NGKSVDGRMI 76
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S S ++V L Y S L FS +G++ V+ DR T +SRG FI F +A SA
Sbjct: 38 SSSKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSA 97
Query: 118 ARAIHGKVLNGRTVNASIAAD 138
+A+ G+ L+GR + + A +
Sbjct: 98 MQAMDGQDLHGRRIKVNYATE 118
>gi|322793642|gb|EFZ17092.1| hypothetical protein SINV_14629 [Solenopsis invicta]
Length = 256
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 38 ADVTSSGPHK-----KSKGSGGLAPSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTV 91
DV S+ H K G G + + +T + VSNLD+ +++SD+ LFS FG + V
Sbjct: 77 GDVNSAWKHDMFDGVKKVGRGAIGNAGTTKLLVSNLDFGVSDSDIQELFSEFGPLKSAAV 136
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
DR+ R S G A + F + DA+ A + HG L+GR +N +A
Sbjct: 137 HYDRSGR-SLGSADVIFERRADAIKAMKQYHGVPLDGREMNIQVA 180
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + T L F+ +G IA+V V++D+ T +SRG F+++ DA A +
Sbjct: 7 LFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGM 66
Query: 122 HGKVLNGRTV 131
+GK ++GRT+
Sbjct: 67 NGKSVDGRTI 76
>gi|242802831|ref|XP_002484053.1| pre-rRNA processing protein Mrd1, putative [Talaromyces stipitatus
ATCC 10500]
gi|218717398|gb|EED16819.1| pre-rRNA processing protein Mrd1, putative [Talaromyces stipitatus
ATCC 10500]
Length = 812
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ NL Y T +DL TLF+ FGKI + V D T S+G A+IQ+V A+ A + +
Sbjct: 288 LFLRNLAYDATEADLETLFAPFGKIDEIHVAFDTRTTSSKGFAYIQYVDPSSAIDAYKNL 347
Query: 122 HGKVLNGRTVN 132
GK GR ++
Sbjct: 348 DGKDFQGRLLH 358
>gi|112983092|ref|NP_001037596.1| ALY [Bombyx mori]
gi|95115188|gb|ABF55960.1| ALY [Bombyx mori]
Length = 254
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
G K + SG + + + VSNLD+ +++SD+ LFS FG + +V DR+ R S G
Sbjct: 84 GERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR-SLGT 142
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
A + F + DA+ A + +G L+GR +N +A
Sbjct: 143 ADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 175
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|412988955|emb|CCO15546.1| Splicing factor, arginine/serine-rich 2 [Bathycoccus prasinos]
Length = 296
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+V + NL + LT ++ +F+++G+I V V ++ T++ RG AF+++V+ A +A A
Sbjct: 59 SVKIDNLSFDLTQEEITDMFASYGEIGDVYVPRNHHTQRMRGFAFVRYVEKQSADAAIDA 118
Query: 121 IHGKVLNGRTVNASIA 136
+H K + GR + +A
Sbjct: 119 MHEKEIAGRIIRVGMA 134
>gi|198434014|ref|XP_002131863.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 7
(Splicing factor 9G8) isoform 3 [Ciona intestinalis]
Length = 311
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 20/131 (15%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
A S VYV NL + DL FS +G++ V V R G A++ F DA
Sbjct: 8 ASSDRKVYVGNLGTHASREDLEEEFSYYGRLDSVWV-----ARNPPGFAYVLFEDARDAK 62
Query: 116 SAARAIHGKVLNGRTVNASIAA---------------DNGRASSFIKKRVYKDKSRCYEC 160
A R + GK++ R V I+ D R ++ RCY C
Sbjct: 63 DAVRGLDGKIICDRKVRVDISNSRSTGRPARRGPAPYDRYGGGGGGGNRGFRSDMRCYNC 122
Query: 161 GDEGHLSYECP 171
+ GH + +CP
Sbjct: 123 SETGHFARDCP 133
>gi|66475216|ref|XP_627424.1| Sgn1p-like RRM domain containing protein [Cryptosporidium parvum
Iowa II]
gi|46228897|gb|EAK89746.1| Sgn1p-like RRM domain containing protein [Cryptosporidium parvum
Iowa II]
Length = 262
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K ++Y+ N+DY ++L LF + G I R+T++ D+ T +G A+++F + P+A+ A
Sbjct: 109 KRSIYIGNVDYGTKLTELQDLFKSCGSINRITIMNDKRTGMPKGFAYLEFCE-PEAVETA 167
Query: 119 RAIHGKVLNGRTVNAS 134
G + GR + S
Sbjct: 168 LKFDGAMFRGRQIKVS 183
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|29654256|ref|NP_819948.1| RNA binding protein [Coxiella burnetii RSA 493]
gi|153207639|ref|ZP_01946303.1| glycine rich RNA binding protein [Coxiella burnetii 'MSU Goat
Q177']
gi|154706606|ref|YP_001424503.1| RNA binding protein [Coxiella burnetii Dugway 5J108-111]
gi|165918878|ref|ZP_02218964.1| glycine rich RNA binding protein [Coxiella burnetii Q321]
gi|212212620|ref|YP_002303556.1| RNA binding protein [Coxiella burnetii CbuG_Q212]
gi|212218487|ref|YP_002305274.1| RNA binding protein [Coxiella burnetii CbuK_Q154]
gi|29541522|gb|AAO90462.1| RNA binding protein [Coxiella burnetii RSA 493]
gi|120576458|gb|EAX33082.1| glycine rich RNA binding protein [Coxiella burnetii 'MSU Goat
Q177']
gi|154355892|gb|ABS77354.1| RNA binding protein [Coxiella burnetii Dugway 5J108-111]
gi|165917426|gb|EDR36030.1| glycine rich RNA binding protein [Coxiella burnetii Q321]
gi|212011030|gb|ACJ18411.1| RNA binding protein [Coxiella burnetii CbuG_Q212]
gi|212012749|gb|ACJ20129.1| RNA binding protein [Coxiella burnetii CbuK_Q154]
Length = 129
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + +DLH FS FG I V ++++ T +S+G AF+ +V A+ A A
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104
Query: 122 HGKVLNGRTVNASIA 136
HGK L GR++ IA
Sbjct: 105 HGKDLQGRSLVVRIA 119
>gi|345870896|ref|ZP_08822845.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921050|gb|EGV31774.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 90
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y T+SDL F+ FG++A+V ++ D+ T +S+G F++ A +A + +
Sbjct: 3 IYVGNLSYNTTDSDLREAFAPFGEVAQVNLISDKFTGQSKGFGFVEMPNNSHADAAIKGL 62
Query: 122 HGKVLNGRTV 131
+G L GR++
Sbjct: 63 NGTDLQGRSI 72
>gi|302812317|ref|XP_002987846.1| hypothetical protein SELMODRAFT_269321 [Selaginella moellendorffii]
gi|302824248|ref|XP_002993769.1| hypothetical protein SELMODRAFT_272337 [Selaginella moellendorffii]
gi|300138419|gb|EFJ05188.1| hypothetical protein SELMODRAFT_272337 [Selaginella moellendorffii]
gi|300144465|gb|EFJ11149.1| hypothetical protein SELMODRAFT_269321 [Selaginella moellendorffii]
Length = 287
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 6 KNKSDSDEEDDTFYYRYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVS 65
KN S EDD A++G AP P+S + + G +++ V+
Sbjct: 153 KNLSFDKPEDDVPGLPSAASG-APGKPTSYVPPSLRGGAKREGDSMRHGSRDDSNSIRVT 211
Query: 66 NLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
NL DL LF FG I+R+ V DR T SRG AFI FV DA+ A + + G
Sbjct: 212 NLSEDTREQDLQELFRPFGNISRIYVAFDRETGLSRGFAFINFVNRDDAVRAIKKLDG 269
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L + L F +G I +V V++D+ T +SRG F+++ DA A +
Sbjct: 7 LFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAKDALEGM 66
Query: 122 HGKVLNGRTVNASIAADNGRAS 143
+GK L+GR + A GR++
Sbjct: 67 NGKTLDGRAIRVDEAGKGGRSN 88
>gi|148227694|ref|NP_001082505.1| embryonic polyadenylate-binding protein 2-A [Xenopus laevis]
gi|82241899|sp|Q804A5.1|EPA2A_XENLA RecName: Full=Embryonic polyadenylate-binding protein 2-A;
Short=Embryonic poly(A)-binding protein 2-A;
Short=XePABP2-A; Short=ePABP-2A; Short=ePABP2-A;
AltName: Full=Embryonic poly(A)-binding protein type
II-A; AltName: Full=PABPN2; AltName: Full=p32
gi|28273596|gb|AAO33927.1| putative polyA-binding protein PABPN2/ePABP2 [Xenopus laevis]
Length = 218
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K +VYV N+DY T DL FS+ G I R+T+L D+ + +G A+I+F + +++ AA
Sbjct: 92 KRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER-NSVDAA 150
Query: 119 RAIHGKVLNGRTV 131
+ V GRT+
Sbjct: 151 VTMDETVFRGRTI 163
>gi|440636356|gb|ELR06275.1| hypothetical protein GMDG_02069 [Geomyces destructans 20631-21]
Length = 312
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
AP+ S + V N+ Y LT SDL LF+ G +A++ ++ DRA R S G+A++ + DA
Sbjct: 81 APASSKLRVDNVHYDLTESDLDGLFNRIGPVAKLELVYDRAGR-SEGIAYVTYESARDAS 139
Query: 116 SAARAIHGKVLNGRTV 131
+A R G NG+ +
Sbjct: 140 AAVREYDGANANGQPI 155
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + ++DL FS FG +A V+ +R T +S+G F++ +A +A + +
Sbjct: 5 LYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGM 64
Query: 122 HGKVLNGRTV 131
+G+ L GR++
Sbjct: 65 NGQPLGGRSL 74
>gi|30697310|ref|NP_851229.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|22531190|gb|AAM97099.1| transcriptional coactivator-like protein [Arabidopsis thaliana]
gi|23198018|gb|AAN15536.1| transcriptional coactivator-like protein [Arabidopsis thaliana]
gi|332009871|gb|AED97254.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 244
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 32 PSSSSSADVTS--SGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV 89
P S+ D+ S S H+ + S G+ + + +Y+SNLDY + N D+ LF+ G++ R
Sbjct: 59 PESTWGHDMFSDRSEDHRSGRSSAGIE-TGTKLYISNLDYGVMNEDIKELFAEVGELKRY 117
Query: 90 TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
TV DR+ R S+G A + + + DAL+A + + L+G+ + I N
Sbjct: 118 TVHFDRSGR-SKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTN 166
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|365875472|ref|ZP_09415000.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442588736|ref|ZP_21007546.1| RNA-binding protein [Elizabethkingia anophelis R26]
gi|365756731|gb|EHM98642.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442561494|gb|ELR78719.1| RNA-binding protein [Elizabethkingia anophelis R26]
Length = 93
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+++SN++Y++ S L LF+++G I ++ DR T +SRG F++ +A +A +
Sbjct: 2 NIFISNINYSVKESQLEELFASYGAIQSAKIIMDRETGRSRGFGFVEMPNNDEANTAIES 61
Query: 121 IHGKVLNGRTVNASIA 136
++G + G+ +N S A
Sbjct: 62 LNGALFQGKNLNVSEA 77
>gi|358059890|dbj|GAA94320.1| hypothetical protein E5Q_00970 [Mixia osmundae IAM 14324]
Length = 173
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 40 VTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK 99
SSG + ++ S G++ ++V L +A T+ L + FS +G++ V+KDR T +
Sbjct: 4 TVSSGSYTQASSSSGMSQK---LFVGGLAWATTDDSLFSAFSQYGEVTDCIVMKDRETGR 60
Query: 100 SRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNG 140
SRG F+ A A A++ L+GR V AAD G
Sbjct: 61 SRGFGFVTMSDPAAAEQAIEALNNGDLDGRQVRVDKAADRG 101
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S S ++V L Y S L FS +G + V+ DR T +SRG FI F +A SA
Sbjct: 38 SSSKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASA 97
Query: 118 ARAIHGKVLNGRTVNASIAADNGRA 142
+A+ G+ L+GR + + A + RA
Sbjct: 98 LQAMDGQDLHGRRIRVNYATEKRRA 122
>gi|168016725|ref|XP_001760899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687908|gb|EDQ74288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S S ++V L + T+ ++ FS FG++ V ++ DR T +SRG F+ F DA +A
Sbjct: 40 SGSKLFVGGLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAA 99
Query: 118 ARAIHGKVLNGRTVNASIA 136
+A+ G+ L GRT+ + A
Sbjct: 100 LQALDGRDLAGRTIRVNYA 118
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|297840491|ref|XP_002888127.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
gi|297333968|gb|EFH64386.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
Length = 286
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++V L + +T L + F +GKI ++ + T + RG FI F A A
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGKDTGRPRGFGFITFTDRRGADEAI 70
Query: 119 RAIHGKVLNGRTVNASIA--------ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
+ +HG+ L R ++ + A D+ + R + C++C GH + +C
Sbjct: 71 KHMHGRELGDRVISVNKAEPKVGGDDVDHLQKGGGYSSRGKGSEDECFKCRRPGHWARDC 130
Query: 171 P 171
P
Sbjct: 131 P 131
>gi|18406831|ref|NP_564759.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|30696446|ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|2462758|gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21593771|gb|AAM65738.1| RNA binding protein, putative [Arabidopsis thaliana]
gi|26983818|gb|AAN86161.1| putative glycine-rich RNA binding protein [Arabidopsis thaliana]
gi|62321068|dbj|BAD94150.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332195593|gb|AEE33714.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332195594|gb|AEE33715.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 292
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++V L + +T L + F +GKI ++ R T + RG FI F A A
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 119 RAIHGKVLNGRTVNASIA--------ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
+ +HG+ L + ++ + A D + R + C++C GH + +C
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
Query: 171 P 171
P
Sbjct: 131 P 131
>gi|328866985|gb|EGG15368.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 436
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
PS+S V+V N+ YA + SDL LFS G++ +++DR +K RG F +++ AL+
Sbjct: 10 PSRS-VFVGNIPYAASESDLVNLFSEVGRVVSFRLVEDRDKKKPRGYGFCEYMDQETALN 68
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSF 145
A R ++ + N R + S ADN +A+
Sbjct: 69 AIRLLNNREFNKRQLRVSY-ADNDKANEL 96
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL +++T+S L +F+ G +A V ++ DR T +SRG AF+ + +A A R
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 122 HGKVLNGRTVNASI 135
G + GRTV +
Sbjct: 176 DGSQVGGRTVKVNF 189
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G S +YV+NL +ALT+ L F+ V+ DR++ +SRG FI F
Sbjct: 211 GFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEA 270
Query: 114 ALSAARAIHGKVLNGRTVNASIAADNGRASS 144
SA ++ L GR + ++A SS
Sbjct: 271 MNSALDTMNEVELEGRPLRLNVAGQKAPVSS 301
>gi|224094981|ref|XP_002310314.1| predicted protein [Populus trichocarpa]
gi|222853217|gb|EEE90764.1| predicted protein [Populus trichocarpa]
Length = 391
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL + +T L LF FG + V + D T + +G F+QF Q+ +A +A A+
Sbjct: 126 LYVGNLHFNMTEMQLRQLFEPFGIVELVQLPLDLETGQCKGFGFVQFTQLENAKAAQSAL 185
Query: 122 HGKV-LNGRTVNASIAADNG 140
+GK+ + GRT+ S ++G
Sbjct: 186 NGKLEIAGRTIKVSSVTEHG 205
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ TV+V + T D++ FS GK+ V ++ DR +R+S+GV +++F DA+S
Sbjct: 20 QRTVFVYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFY---DAMSVP 76
Query: 119 RAI--HGKVLNGRTV 131
AI G++L G+ V
Sbjct: 77 MAITLSGQLLLGQPV 91
>gi|1778374|gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
gi|206586422|gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum]
Length = 146
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S S +++ L Y + + L F+++G++ V+ DR T +SRG F+ F A SA
Sbjct: 34 SSSKLFIGGLSYGVDDQSLKDAFASYGEVVEARVITDRDTGRSRGFGFVNFTSDESATSA 93
Query: 118 ARAIHGKVLNGRTVNASIAAD 138
A+ G+ LNGR + S A D
Sbjct: 94 LSAMDGQDLNGRNIRVSYAND 114
>gi|255587593|ref|XP_002534324.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223525498|gb|EEF28060.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 184
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VYV NLD ++ DL F +G + V V R+ G AF++F DA+ A R
Sbjct: 2 ARVYVGNLDPRVSERDLEDEFRMYGVLRSVWV-----ARRPPGYAFVEFDDRRDAVDAIR 56
Query: 120 AIHGKVLNGRTV----NASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
A+ GK NG V N+ G S + + +CYECG+ GH + EC R ++
Sbjct: 57 ALDGK--NGWRVELSHNSKGGGGRGGGSGGGGRGRGGEDMKCYECGEPGHFAREC-RLRI 113
Query: 176 GPR 178
G R
Sbjct: 114 GSR 116
>gi|334188502|ref|NP_001190572.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009875|gb|AED97258.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 245
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
H+ + S G+ + + +Y+SNLDY + N D+ LF+ G++ R TV DR+ R S+G A
Sbjct: 75 HRSGRSSAGIE-TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAE 132
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
+ + + DAL+A + + L+G+ + I N
Sbjct: 133 VVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTN 166
>gi|255568699|ref|XP_002525321.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223535380|gb|EEF37054.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 126
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P S ++V+ L +++ L FS+FG+++ V ++ D+ + +SRG F+ F + +A+
Sbjct: 22 PPNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKENEAVC 81
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRV 150
A A+ GK L GR + S A + R + R+
Sbjct: 82 AKDAMDGKALLGRPLRISFALEKVRGGPIVVPRL 115
>gi|9757916|dbj|BAB08363.1| RNA and export factor binding protein 2-I-like protein [Arabidopsis
thaliana]
Length = 239
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
H+ + S G+ + + +Y+SNLDY + N D+ LF+ G++ R TV DR+ R S+G A
Sbjct: 75 HRSGRSSAGIE-TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAE 132
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
+ + + DAL+A + + L+G+ + I N
Sbjct: 133 VVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTN 166
>gi|388583201|gb|EIM23503.1| hypothetical protein WALSEDRAFT_67167 [Wallemia sebi CBS 633.66]
Length = 89
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +Y+SNL ++ + DL FS FG+I+ V+KDR T +SRG F+ + +A SA
Sbjct: 5 SKIYISNLSWSTNDEDLARAFSPFGQISDYIVMKDRQTGRSRGFGFVTYANDREASSALE 64
Query: 120 AIHGKVLNGRTVNASIA 136
+++ L+GR + + A
Sbjct: 65 SMNEVELDGRRIRVNYA 81
>gi|21388662|dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S S ++V L + T+ ++ FS FG++ V ++ DR T +SRG F+ F DA +A
Sbjct: 40 SGSKLFVGGLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAA 99
Query: 118 ARAIHGKVLNGRTVNASIA 136
+A+ G+ L GRT+ + A
Sbjct: 100 LQALDGRDLAGRTIRVNYA 118
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|293335932|ref|NP_001168160.1| uncharacterized protein LOC100381912 [Zea mays]
gi|223946377|gb|ACN27272.1| unknown [Zea mays]
gi|414872130|tpg|DAA50687.1| TPA: hypothetical protein ZEAMMB73_997132 [Zea mays]
Length = 297
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + L F FGK+ ++ +R T + RG F+ F SA + +
Sbjct: 9 IFVGGLSWQTDERKLEDAFGRFGKVVDAQIMVERHTNRHRGFGFVTFEDRRAVDSAIKEM 68
Query: 122 HGKVLNGRTVNASIA-----ADNGRASSFIKKRVYKDKSR-------CYECGDEGHLSYE 169
HG+ ++GRT++ + A D+ R + + Y+ C+ECG GH +
Sbjct: 69 HGQEIDGRTISVNKAEPKMNTDDTRYAGGGGRGEYRGGRGDGPPPGNCFECGRPGHWVRD 128
Query: 170 CPRNQLGPRERPMPKKL 186
CP + G R P K
Sbjct: 129 CP-SAAGGRSGRFPSKF 144
>gi|449525351|ref|XP_004169681.1| PREDICTED: uncharacterized LOC101205455 [Cucumis sativus]
Length = 778
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 25 TGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSK----STVYVSNLDYALTNSDLHTLF 80
+G + NP +++ S+ P + S G+ G+ P+K + +Y+ L + L LF
Sbjct: 443 SGTSGTNPPWANNTTSASNTP-QASVGANGVKPAKEYDDTNLYIGYLPPTFDDDGLIRLF 501
Query: 81 STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
STFG I V+KDR + S+G F+++ I A +A +++G L GRT+ +A
Sbjct: 502 STFGDIVMAKVIKDRVSGLSKGYGFVKYSDIQMANNAIASMNGYRLEGRTIAVRVA 557
>gi|383118922|ref|ZP_09939662.1| hypothetical protein BSHG_3968 [Bacteroides sp. 3_2_5]
gi|251944121|gb|EES84630.1| hypothetical protein BSHG_3968 [Bacteroides sp. 3_2_5]
Length = 122
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++++ + Y L+N+DL LF FG++ ++ DR T +S+G F++ + +A A
Sbjct: 2 NIFIAGISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAA 61
Query: 121 IHGKVLNGRTVNASIA 136
+H K ++G+T+ S+A
Sbjct: 62 LHEKEIDGKTLAVSVA 77
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + + L FS +G IA+V V++DR T++SRG F+ F DA A A+
Sbjct: 7 LFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAM 66
Query: 122 HGKVLNGRTV 131
+GK ++GR +
Sbjct: 67 NGKSVDGRMI 76
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S V+V L Y + + L F+TFG + ++ DR T +SRG F+ F +A +A
Sbjct: 39 SKVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAAVE 98
Query: 120 AIHGKVLNGRTVNASIAAD 138
A+ GK L GR++ +IA +
Sbjct: 99 AMDGKDLQGRSIRVNIAQE 117
>gi|327264866|ref|XP_003217232.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Anolis
carolinensis]
Length = 221
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F DA A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G VL+GR + +A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S S +++ L Y + + L FS FG + V+ DR + +SRG F+ F A SA
Sbjct: 34 SSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSA 93
Query: 118 ARAIHGKVLNGRTVNASIAAD 138
A+ GK LNGR++ S A D
Sbjct: 94 LSAMDGKDLNGRSIRVSYAND 114
>gi|256089261|ref|XP_002580731.1| arginine/serine-rich splicing factor [Schistosoma mansoni]
gi|350646105|emb|CCD59207.1| arginine/serine-rich splicing factor, putative [Schistosoma
mansoni]
Length = 157
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 24/130 (18%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VY+ +L + +L +F +G++ V V R G AF++F DA A R
Sbjct: 10 TKVYIGDLPREASERELERIFREYGRLRNVWV-----ARNPPGFAFVEFEDAADASDAVR 64
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFI-------------------KKRVYKDKSRCYEC 160
+ G V+ G ++ R ++ + + + RCYEC
Sbjct: 65 ELDGTVMCGVRARVELSTGKSRQKPWVRGGGGARNGGGRDNGIGSRRMKPFDPTDRCYEC 124
Query: 161 GDEGHLSYEC 170
G+ GH +Y+C
Sbjct: 125 GERGHYAYDC 134
>gi|34535789|dbj|BAC87434.1| unnamed protein product [Homo sapiens]
Length = 135
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKV 125
A A++GKV
Sbjct: 61 KDAMMAMNGKV 71
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181
>gi|392397594|ref|YP_006434195.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390528672|gb|AFM04402.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 97
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YVSNL Y+++ +L +FS G + ++ DR TR+SRG F++ D +A +
Sbjct: 3 LYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEEL 62
Query: 122 HGKVLNGRTVNA 133
+G L GR +
Sbjct: 63 NGVELKGREIQV 74
>gi|443429415|gb|AGC92700.1| serine/arginine-rich splicing factor 2-like protein [Heliconius
erato]
Length = 168
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
V NL Y T DL +F G + + + +DR TR+SRG AF++F DA A ++ G
Sbjct: 18 VDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDRRDAEEALDSLDG 77
Query: 124 KVLNGRTVNASIAADNGRASSFIKKRVY 151
++L+GR + +A +S + RV+
Sbjct: 78 RMLDGRELRVQMARYGRPSSPYRTTRVH 105
>gi|351694750|gb|EHA97668.1| Putative RNA-binding protein 19 [Heterocephalus glaber]
Length = 955
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y T DL LFST+G ++ + D T+K +G AF+ F+ A+ A A+
Sbjct: 399 LFVRNLPYTSTEEDLEKLFSTYGPLSELHFPIDSLTKKPKGFAFVTFLFPEHAVKAYSAV 458
Query: 122 HGKVLNGRTVNA 133
G+V GR ++
Sbjct: 459 DGQVFQGRMLHV 470
>gi|449458337|ref|XP_004146904.1| PREDICTED: uncharacterized protein LOC101205455 [Cucumis sativus]
Length = 777
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 25 TGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSK----STVYVSNLDYALTNSDLHTLF 80
+G + NP +++ S+ P + S G+ G+ P+K + +Y+ L + L LF
Sbjct: 443 SGTSGTNPPWANNTTSASNTP-QASVGANGVKPAKEYDDTNLYIGYLPPTFDDDGLIRLF 501
Query: 81 STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
STFG I V+KDR + S+G F+++ I A +A +++G L GRT+ +A
Sbjct: 502 STFGDIVMAKVIKDRVSGLSKGYGFVKYSDIQMANNAIASMNGYRLEGRTIAVRVA 557
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNMELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|387914322|gb|AFK10770.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392876160|gb|AFM86912.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 133
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L ++ L +FS +G+I+ V V+KDR T+ SRG FI F DA A A+
Sbjct: 7 LFVGGLSFSTDEQSLEEVFSEYGQISEVRVIKDRDTQLSRGFGFITFENPGDAKDALLAM 66
Query: 122 HGKVLNGRTVNASIA 136
+GK ++GR + A
Sbjct: 67 NGKSIDGRQIRVDQA 81
>gi|390595344|gb|EIN04750.1| hypothetical protein PUNSTDRAFT_146379 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 989
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
ST++VSNL Y T++DL TLFS + V+ + + S+GV ++ F DA A
Sbjct: 23 STLFVSNLPYTATSTDLQTLFSDIAPVRSAFVVTEHGSGVSKGVGYVSFAIKEDAQGAYD 82
Query: 120 AI--HGKVLNGRTVNASIAADNGRASSFIKKRVYKD 153
I G L+GR + + A G+ F KKR D
Sbjct: 83 KIAEEGIELDGRKLRVTWAEKKGKHDEFPKKRKNDD 118
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKI--ARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+T++V N+ Y T ++ TLF FG + AR+T+ D T + RG F F DA
Sbjct: 496 TTLFVRNVPYEATEEEMRTLFRAFGPLRYARITI--DPETGRCRGTGFACFWNKEDA 550
>gi|161831384|ref|YP_001596772.1| glycine-rich RNA binding protein [Coxiella burnetii RSA 331]
gi|161763251|gb|ABX78893.1| glycine-rich RNA binding protein [Coxiella burnetii RSA 331]
Length = 128
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y + +DLH FS FG I V ++++ T +S+G AF+ +V A+ A A
Sbjct: 45 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 103
Query: 122 HGKVLNGRTVNASIA 136
HGK L GR++ IA
Sbjct: 104 HGKDLQGRSLVVRIA 118
>gi|218193515|gb|EEC75942.1| hypothetical protein OsI_13038 [Oryza sativa Indica Group]
Length = 261
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L + L F FGK+ ++ +R T++ RG F+ F SA + +
Sbjct: 9 IFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEM 68
Query: 122 HGKVLNGRTVNASIA-----ADNGRASSFIKKRVYKDKSR-------CYECGDEGHLSYE 169
H + L+GRT++ + A D+ R S + Y+ C+ECG GH + +
Sbjct: 69 HCQELDGRTISVNKAEPKMNTDDTRYESGGGRGEYRGGRGDGPPPGNCFECGRAGHWARD 128
Query: 170 CP 171
CP
Sbjct: 129 CP 130
>gi|297797433|ref|XP_002866601.1| hypothetical protein ARALYDRAFT_496619 [Arabidopsis lyrata subsp.
lyrata]
gi|297312436|gb|EFH42860.1| hypothetical protein ARALYDRAFT_496619 [Arabidopsis lyrata subsp.
lyrata]
Length = 305
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V N+ + T DL+ LF+ +GK+ V + +DR T SRG AF+++ +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRV 150
+ G+V++GR + A A K RV
Sbjct: 77 LDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>gi|125546077|gb|EAY92216.1| hypothetical protein OsI_13935 [Oryza sativa Indica Group]
Length = 960
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S STV+VSNL Y +SDL +FS G + R ++ + + SRG F+QF + DA +
Sbjct: 32 SPSTVFVSNLPYTFKSSDLEAVFSEVGPVRRCFMVAPKGSETSRGFGFVQFATVQDAERS 91
Query: 118 ARAIHGKVLNGRTVNASIA 136
+ G + GR + +A
Sbjct: 92 IQRKDGFSVAGRKIRVKLA 110
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G G K V V NL + +T ++ +FS G I V++ + S+G AF+ F +
Sbjct: 293 GGEGSKIRKWRVIVRNLPFKITVKEIMDIFSLAGFIWDVSIPQKSYDGASKGFAFVSFTR 352
Query: 111 IPDALSAARAIHGKVLNGRTV 131
DA +A + ++GKV+ RTV
Sbjct: 353 KQDAENAIKNVNGKVVAKRTV 373
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQF 108
T+++SNL + L+N ++ FS FGK+ + + T++ RG F++F
Sbjct: 524 TLFISNLPFDLSNEEVTERFSAFGKVESFFPVLHKLTKRPRGTGFLKF 571
>gi|224120444|ref|XP_002318331.1| predicted protein [Populus trichocarpa]
gi|222859004|gb|EEE96551.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G K+ +YVS L + T L F FG++ V ++ D+ ++ RG AF+++ +
Sbjct: 84 GFNFRKTKLYVSGLSFRTTEESLRNAFQNFGQLVDVNLVMDKVAKRPRGFAFLRYETEEE 143
Query: 114 ALSAARAIHGKVLNGRTVNASIA 136
A A +HGK L+GR + +A
Sbjct: 144 AQKAIEGMHGKFLDGRVIFVEVA 166
>gi|195635411|gb|ACG37174.1| splicing factor, arginine/serine-rich 7 [Zea mays]
gi|413922982|gb|AFW62914.1| splicing factor, arginine/serine-rich 7 [Zea mays]
Length = 277
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V+V NLD +T ++ F TFG + V V RK G AFI F DA A R +
Sbjct: 4 VFVGNLDPRVTAREIEDEFRTFGVLKSVWV-----ARKPPGFAFIDFDDRRDAQDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S + + +CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELST-----KDGGGRGRDRNGSDMKCYECGEVGHFAREC 100
>gi|164657808|ref|XP_001730030.1| hypothetical protein MGL_3016 [Malassezia globosa CBS 7966]
gi|159103924|gb|EDP42816.1| hypothetical protein MGL_3016 [Malassezia globosa CBS 7966]
Length = 255
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 8 KSDSDEEDDTFYYRYASTGNAPANPSSSSSAD---VTSSGPHK------------KSKGS 52
++D D D+ + NA A SS AD TS P K KSK +
Sbjct: 72 ENDGDGNDEAHHDDQHDENNAGAGDGESSPADGGNATSGTPLKAKRSKPGAPRRPKSKPA 131
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
G PS++ +YVS+L Y++ N L LF+ + + V R+SRG AF+ F
Sbjct: 132 KG-EPSETVLYVSHLAYSVNNDKLMELFAPYNVKSAQVVYNRFRPRQSRGFAFVDFHSKQ 190
Query: 113 DALSAARAIHGKVLNGRTVNASIA 136
D A +G L GRT+N SIA
Sbjct: 191 DQEKAMAEKNGTELMGRTLNVSIA 214
>gi|359688008|ref|ZP_09258009.1| RNP-1 like RNA-binding protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
Length = 100
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S ++V L ++ T+ L +F T G I ++ DR T +SRG F+ FV A +A
Sbjct: 3 SKLFVGGLSWSTTDLTLRQVFETHGAIQEANIVVDRETGRSRGFGFVTFVDQSSANAAVS 62
Query: 120 AIHGKVLNGRTVNASIAADNGRA 142
++GK L+GR + S+A D R+
Sbjct: 63 ELNGKDLDGRNIVVSVAEDKSRS 85
>gi|407929404|gb|EKG22234.1| hypothetical protein MPH_00413 [Macrophomina phaseolina MS6]
Length = 159
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +++ L + ++ L F FG++ V+KDR T +SRG F++F Q DA +A +
Sbjct: 2 SKLFIGGLAWHTDDATLRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRFTQESDAEAAIQ 61
Query: 120 AIHGKVLNGRTVNASIAAD 138
A++ +GRT+ A+D
Sbjct: 62 AMNNVEFDGRTIRVDKASD 80
>gi|332529248|ref|ZP_08405212.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332041471|gb|EGI77833.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 110
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +YV NL Y++ + DL F FG + V+ DR + +S+G F++ A +A R
Sbjct: 3 SKLYVGNLSYSVRDDDLQQQFGAFGDVQSAKVMMDRDSGRSKGFGFVEMGSADQAEAAIR 62
Query: 120 AIHGKVLNGRTVNASIA 136
+HG+ + GR + +IA
Sbjct: 63 GLHGQNVGGRDMVVNIA 79
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 405 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 456
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 457 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 510
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V N+ A T+ +L +LF G++ V+KD AF+ + DA +A +
Sbjct: 49 IFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQL 100
Query: 122 HGKVLNGRTVNASIA 136
+GK + G+ +N ++
Sbjct: 101 NGKEVKGKRINVELS 115
>gi|300778389|ref|ZP_07088247.1| RNA-binding protein [Chryseobacterium gleum ATCC 35910]
gi|300503899|gb|EFK35039.1| RNA-binding protein [Chryseobacterium gleum ATCC 35910]
Length = 116
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++VSN++YA +LH LF+ FG ++ ++ DR T +SRG F++ + + A ++
Sbjct: 3 IFVSNINYATKEYELHDLFAEFGDVSSAKIVTDRETGRSRGFGFVE-MGDDEGKQAIESL 61
Query: 122 HGKVLNGRTVNASIA 136
+ K NG+T+N S A
Sbjct: 62 NQKEFNGKTLNVSEA 76
>gi|164659450|ref|XP_001730849.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
gi|159104747|gb|EDP43635.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
Length = 549
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 23 ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFST 82
A TG P P S+ S S G S A ++ +YV NL Y +T+ + +F
Sbjct: 281 APTG--PIMPPSAHSGATVSGG--DAMGASAVTADPEARLYVGNLHYDITSQHVRVVFEP 336
Query: 83 FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA 142
FG + V V + T KS+G AF+QF + +A A ++G L GR + G+
Sbjct: 337 FGHLDEVEVCYNHMTGKSKGFAFVQFRNVHEAKQAMEQLNGFELAGRAMRVGPVNARGQG 396
Query: 143 SS 144
SS
Sbjct: 397 SS 398
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
G PS VYV NL + + S L LFS GK+ V+ DR T +SRG F+
Sbjct: 143 GDFEPS-CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSES 201
Query: 113 DALSAARAIHGKVLNGRTVNASIAADNGR 141
+ A A+ G+ L+GR V ++A + R
Sbjct: 202 EVNDAIAALDGQTLDGRAVRVNVAEERPR 230
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P ++ ++V NL Y + + L +F G + V+ +R T +SRG F+ + +A
Sbjct: 52 PEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 111
Query: 117 AARAIHGKVLNGRTVNASIAADNG 140
A ++G ++GR + + AA G
Sbjct: 112 AVELLNGYDMDGRQLTVNKAAPRG 135
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL + +T+S L +F+ +G + V+ DR T +S+G F++ +A +A +
Sbjct: 42 LYVGNLSWGVTDSQLQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAITGM 101
Query: 122 HGKVLNGR--TVN 132
HG+V+ GR TVN
Sbjct: 102 HGQVIEGRPLTVN 114
>gi|238482369|ref|XP_002372423.1| transformer-SR ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|317139223|ref|XP_003189145.1| transformer-SR ribonucleoprotein [Aspergillus oryzae RIB40]
gi|317139225|ref|XP_001817354.2| transformer-SR ribonucleoprotein [Aspergillus oryzae RIB40]
gi|220700473|gb|EED56811.1| transformer-SR ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|391864654|gb|EIT73949.1| hypothetical protein Ao3042_10100 [Aspergillus oryzae 3.042]
Length = 308
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 45 PHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
P K + G + S ++V+ + LT SD+ LF +G + +++ D T++SRG
Sbjct: 53 PRKPLEDEEGAVNTGSNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFG 112
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
F++ V A +A + G+V+ GRT++ A
Sbjct: 113 FVKMVTAEQADAAKEGLQGEVIEGRTLSIEKA 144
>gi|146421021|ref|XP_001486462.1| hypothetical protein PGUG_02133 [Meyerozyma guilliermondii ATCC
6260]
gi|146389877|gb|EDK38035.1| hypothetical protein PGUG_02133 [Meyerozyma guilliermondii ATCC
6260]
Length = 159
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ ++YV N++Y T L FS G + RVT+L DR + S+G A+I+F A A
Sbjct: 38 QRSIYVGNVEYLSTPGQLEEFFSAVGTVERVTILFDRYSGLSKGFAYIEFDTTEAAERAI 97
Query: 119 RAIHGKVLNGRTVNAS 134
+HGK N R + S
Sbjct: 98 EELHGKKFNERELRIS 113
>gi|91202563|emb|CAJ72202.1| rna binding protein [Candidatus Kuenenia stuttgartiensis]
Length = 126
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y NL T +L +F FG++ VT++KD+ + +SRG F++ +A +A ++
Sbjct: 3 IYAGNLARQTTEEELKQVFEEFGQVTSVTIIKDKFSGESRGFGFVEMPSRAEAQAALDSL 62
Query: 122 HGKVLNGRTVNASIA 136
+GK LNGR +N + A
Sbjct: 63 NGKDLNGRVLNVNEA 77
>gi|388497012|gb|AFK36572.1| unknown [Medicago truncatula]
Length = 280
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 23 ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFST 82
ST NA PS + AD T ++ +++V V+NL DLH LF T
Sbjct: 169 VSTNNAYVPPSLRAGADRTGGSDMRRRN-------DENSVRVTNLSEDTREPDLHELFGT 221
Query: 83 FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
FG ++RV V D+ T SRG F+ FV DA A ++G
Sbjct: 222 FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKLNG 262
>gi|42568662|ref|NP_200803.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009872|gb|AED97255.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 178
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAF 105
H+ + S G+ + + +Y+SNLDY + N D+ LF+ G++ R TV DR+ R S+G A
Sbjct: 9 HRSGRSSAGIE-TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAE 66
Query: 106 IQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
+ + + DAL+A + + L+G+ + I N
Sbjct: 67 VVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTN 100
>gi|304441001|gb|ADM33940.1| ALY [Bombyx mori]
Length = 254
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
G K + SG + + + VSNLD+ +++SD+ LFS FG + +V DR+ R S G
Sbjct: 84 GERKLPRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILESASVHYDRSGR-SLGT 142
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
A + F + DA+ A + +G L+GR +N +A
Sbjct: 143 ADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 175
>gi|159794905|pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
gi|159794906|pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K +VYV N+DY T DL FS+ G I R+T+L D+ + +G A+I+F + +++ AA
Sbjct: 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAA 94
Query: 119 RAIHGKVLNGRTV 131
A+ V GRT+
Sbjct: 95 VAMDETVFRGRTI 107
>gi|9843653|emb|CAC03600.1| splicing factor SC35 [Arabidopsis thaliana]
Length = 303
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V N+ + T DL+ LF+ +GK+ V + +DR T SRG AF+++ +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRV 150
+ G+V++GR + A A K RV
Sbjct: 77 LDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>gi|15237641|ref|NP_201225.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
gi|30697964|ref|NP_851261.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
gi|9759396|dbj|BAB09851.1| unnamed protein product [Arabidopsis thaliana]
gi|17380868|gb|AAL36246.1| unknown protein [Arabidopsis thaliana]
gi|21689657|gb|AAM67450.1| unknown protein [Arabidopsis thaliana]
gi|22022546|gb|AAM83231.1| AT5g64200/MSJ1_4 [Arabidopsis thaliana]
gi|23505861|gb|AAN28790.1| At5g64200/MSJ1_4 [Arabidopsis thaliana]
gi|332010470|gb|AED97853.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
gi|332010471|gb|AED97854.1| splicing factor, arginine/serine-rich 2 [Arabidopsis thaliana]
Length = 303
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
++ V N+ + T DL+ LF+ +GK+ V + +DR T SRG AF+++ +A A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 121 IHGKVLNGRTVNASIAADNGRASSFIKKRV 150
+ G+V++GR + A A K RV
Sbjct: 77 LDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>gi|374384996|ref|ZP_09642507.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
gi|373227054|gb|EHP49375.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
Length = 100
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+YVSNL YA+ +SDL LF +G+I+ V+ DR + +SRG F++ + A
Sbjct: 2 NIYVSNLSYAVNDSDLRDLFGEYGEISSAKVIMDRESGRSRGFGFVEMPSDTEGQKAIDE 61
Query: 121 IHGKVLNGRTVNASIA 136
++ +G+ +N ++A
Sbjct: 62 LNQVEYDGKVINVNVA 77
>gi|430747489|ref|YP_007206618.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430019209|gb|AGA30923.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 118
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL +++T+ +L LF +FG ++ V++DR T +SRG F++ V + +A + +
Sbjct: 5 LYVGNLGFSVTSEELQALFESFGAVSMSQVVEDRETGRSRGFGFVEMVNDAEGDAAIQGL 64
Query: 122 HGKVLNGRTVNASIA 136
G+ GR +N S A
Sbjct: 65 DGRDHQGRRLNISEA 79
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181
>gi|428176294|gb|EKX45179.1| hypothetical protein GUITHDRAFT_152759 [Guillardia theta CCMP2712]
Length = 150
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 40 VTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK 99
+ SS P + G + +VS L +ALT+ DL LF+ FG I V+ DR T +
Sbjct: 39 IASSRPVARFAGLSMQELDPNKCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGR 98
Query: 100 SRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
SRG F+ F + D +A A+ + GRTV
Sbjct: 99 SRGFGFVTFAESADCEAAITAMDKANIGGRTV 130
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
G PS VYV NL + + S L LFS GK+ V+ DR T +SRG F+
Sbjct: 136 GDFEPS-CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSES 194
Query: 113 DALSAARAIHGKVLNGRTVNASIAADNGR 141
+ A A+ G+ L+GR V ++A + R
Sbjct: 195 EVNDAIAALDGQTLDGRAVRVNVAEERPR 223
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P ++ ++V NL Y + + L +F G + V+ +R T +SRG F+ + +A
Sbjct: 45 PEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 104
Query: 117 AARAIHGKVLNGRTVNASIAADNG 140
A ++G ++GR + + AA G
Sbjct: 105 AVELLNGYDMDGRQLTVNKAAPRG 128
>gi|325279405|ref|YP_004251947.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
gi|324311214|gb|ADY31767.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
Length = 106
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+Y+SNL YA+ + DL LF +G+I+ V+ DR T +SRG F++ A
Sbjct: 2 NIYISNLSYAVNDGDLKDLFGEYGEISSAKVITDRETGRSRGFGFVEMADDAQGQKAIDE 61
Query: 121 IHGKVLNGRTVNASIA 136
++ +G+ +N ++A
Sbjct: 62 LNQAEYDGKVINVTVA 77
>gi|331241775|ref|XP_003333535.1| hypothetical protein PGTG_14957 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312525|gb|EFP89116.1| small subunit ribosomal protein S19 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 206
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 37 SADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA 96
S+ V SS H ++ S P + ++V NL + + L + F FG + V++DR
Sbjct: 9 SSRVLSSILHPRTLSSMSSPPGGNKLFVGNLAWTTDSGSLKSAFGQFGDVVDAIVMQDRE 68
Query: 97 TRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
T +SRG FI F + A A A++G+ L+GR + + A
Sbjct: 69 TGRSRGFGFITFKEEAAAPGAIEALNGQELDGREIRVNYA 108
>gi|68483054|ref|XP_714561.1| hypothetical protein CaO19.1389 [Candida albicans SC5314]
gi|46436140|gb|EAK95508.1| hypothetical protein CaO19.1389 [Candida albicans SC5314]
Length = 163
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+VYV N+DY T L F G I RVT+L DR + +G A+I+F Q A
Sbjct: 29 SVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAIDE 88
Query: 121 IHGKVLNGRTVNAS 134
+HGK GR + +
Sbjct: 89 LHGKEFRGRELRVT 102
>gi|406954527|gb|EKD83359.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 95
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y+ T L T+F +G++ +++KDR T +S+G F++ A A +A+
Sbjct: 3 IYVGNLPYSATEEQLKTMFGVYGEVTTASIIKDRDTGRSKGFGFVEMTNDAAAEEAIQAL 62
Query: 122 HGKVLNGRTVNASIA 136
+ +NGR + + A
Sbjct: 63 NETDMNGRNIKVNQA 77
>gi|301093774|ref|XP_002997732.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109981|gb|EEY68033.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 226
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +YV+NL + DL LFS FG++ + V+ D T++SRG F+ F + DA A +
Sbjct: 65 NNLYVANLATRVGQQDLQDLFSKFGRVEKCEVIVDPVTKESRGFGFVTFEDVRDAEDAVK 124
Query: 120 AIHGKVLNGRTVNASIA 136
++ + + GR + A
Sbjct: 125 ELNNQEVQGRKMRVEHA 141
>gi|256089259|ref|XP_002580730.1| arginine/serine-rich splicing factor [Schistosoma mansoni]
gi|350646106|emb|CCD59208.1| arginine/serine-rich splicing factor, putative [Schistosoma
mansoni]
Length = 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 24/130 (18%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VY+ +L + +L +F +G++ V V R G AF++F DA A R
Sbjct: 10 TKVYIGDLPREASERELERIFREYGRLRNVWV-----ARNPPGFAFVEFEDAADASDAVR 64
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFI-------------------KKRVYKDKSRCYEC 160
+ G V+ G ++ R ++ + + + RCYEC
Sbjct: 65 ELDGTVMCGVRARVELSTGKSRQKPWVRGGGGARNGGGRDNGIGSRRMKPFDPTDRCYEC 124
Query: 161 GDEGHLSYEC 170
G+ GH +Y+C
Sbjct: 125 GERGHYAYDC 134
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 38 ADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT 97
A+ S P KK++ GG + + V+V L + + N L + F + G++ V+ DR +
Sbjct: 174 AEEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDS 233
Query: 98 RKSRGVAFIQFVQIPDALSAARAIH--GKVLNGRTVNASIAADNGRASSFIKK-RVYKDK 154
+KSRG +++F D S+A+AI G ++GR + + A + K+ RV+ DK
Sbjct: 234 QKSRGFGYVEFA---DLESSAKAIEKDGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDK 290
Query: 155 -SRCYECGDEGHLSYECPRNQL 175
S E G LS+ +Q+
Sbjct: 291 QSPPAETLWIGSLSFSVTEDQV 312
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
+P T+++ +L +++T ++ F G + V + DR T +G ++QF + DA
Sbjct: 292 SPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDAS 351
Query: 116 SAARAIHGKVLNGRTVNASIA---ADNG 140
+A +A++G + GR + A DNG
Sbjct: 352 AALKAMNGAEIAGRAIRVDFAPPKQDNG 379
>gi|67541012|ref|XP_664280.1| hypothetical protein AN6676.2 [Aspergillus nidulans FGSC A4]
gi|40738429|gb|EAA57619.1| hypothetical protein AN6676.2 [Aspergillus nidulans FGSC A4]
gi|259480260|tpe|CBF71228.1| TPA: transformer-SR ribonucleoprotein, putative (AFU_orthologue;
AFUA_7G05260) [Aspergillus nidulans FGSC A4]
Length = 307
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 45 PHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
P K+ G + S ++V+ + LT SD+ LF +G + +++ D T++SRG
Sbjct: 52 PRKQLDDDEGAVNTGSNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFG 111
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
F+ V A +A + G+V+ GRT++ A
Sbjct: 112 FVNMVTAEQADAAKEGLQGEVIEGRTLSIEKA 143
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181
>gi|83765209|dbj|BAE55352.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 311
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 45 PHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
P K + G + S ++V+ + LT SD+ LF +G + +++ D T++SRG
Sbjct: 53 PRKPLEDEEGAVNTGSNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFG 112
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
F++ V A +A + G+V+ GRT++ A
Sbjct: 113 FVKMVTAEQADAAKEGLQGEVIEGRTLSIEKA 144
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 33 SSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVL 92
+S+++A+ + P + G+G S++YV +L+ ++T + L+ FS+ G + + V
Sbjct: 15 ASNATANADGTTPAAQQPGAG-----TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVC 69
Query: 93 KDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
+D TR+S G A++ F DA A ++ +V+NG+ +
Sbjct: 70 RDLITRRSLGYAYVNFQSPNDAAHAIDVLNFQVINGKPI 108
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +Y+ NL+ + L LF FG I V++D A+ SRG AF+ F +A A
Sbjct: 318 ANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRD-ASGVSRGSAFVAFSSPDEATRAVT 376
Query: 120 AIHGKVLNGRTVNASIA 136
++GK++ + + ++A
Sbjct: 377 EMNGKMVGAKPLYVALA 393
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ NLD A+ N L F+ FG I V D S+G F+QF A +A +
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMD-GQGNSKGYGFVQFETQEAAQAAIDNV 185
Query: 122 HGKVLNGRTV 131
+G LN + V
Sbjct: 186 NGMELNDKQV 195
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 38 ADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT 97
A+ S P KK++ GG + + V+V L + + N L + F + G++ V+ DR +
Sbjct: 171 AEEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDS 230
Query: 98 RKSRGVAFIQFVQIPDALSAARAIH--GKVLNGRTVNASIAADNGRASSFIKK-RVYKDK 154
+KSRG +++F D S+A+AI G ++GR + + A + K+ RV+ DK
Sbjct: 231 QKSRGFGYVEFA---DLESSAKAIEKDGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDK 287
Query: 155 -SRCYECGDEGHLSYECPRNQL 175
S E G LS+ +Q+
Sbjct: 288 QSPPAETLWIGSLSFSVTEDQV 309
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
+P T+++ +L +++T ++ F G + V + DR T +G ++QF + DA
Sbjct: 289 SPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDAS 348
Query: 116 SAARAIHGKVLNGRTVNASIA---ADNG 140
+A +A++G + GR + A DNG
Sbjct: 349 AALKAMNGAEIAGRAIRVDFAPPKQDNG 376
>gi|403412344|emb|CCL99044.1| predicted protein [Fibroporia radiculosa]
Length = 599
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 43 SGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRG 102
S PH GG+ +YV +L + LT SD+ +F FG++ V + +D T +S+G
Sbjct: 367 SAPH------GGM-----QLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKG 415
Query: 103 VAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNG 140
AF+Q+ + DA A + G L GRT+ + + G
Sbjct: 416 YAFVQYKRAEDARMALEQMEGFELAGRTLRVNTVHEKG 453
>gi|356542361|ref|XP_003539635.1| PREDICTED: RNA-binding protein 28-like [Glycine max]
Length = 958
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 44 GPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV 103
G K K +GG ST++VSNL Y+ +NS L FS G + R ++ + + + RG
Sbjct: 2 GKKNKVKENGGKEHCSSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFIVTQKGSAQHRGF 61
Query: 104 AFIQFVQIPDALSAARAIHGKVLNGRTV 131
++QF DA A +G + GR +
Sbjct: 62 GYVQFAVEEDANRAIELKNGTSVEGRKI 89
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA---LSA 117
TV++SNL + N ++ FS FG+I + + T++ RG F++F + A +S
Sbjct: 499 TVFISNLPFECDNEEVKQRFSGFGEIEYFVPVLHQVTKRPRGTGFLKFKTVEAANTVIST 558
Query: 118 ARAIHGK--VLNGRTVNASIAAD 138
ARA G +L GR + A D
Sbjct: 559 ARAASGMGILLKGRPLKVLKALD 581
>gi|57335957|emb|CAH25380.1| putative glycine-rich RNA-binding protein [Guillardia theta]
Length = 152
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 40 VTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK 99
+ SS P + G + +VS L +ALT+ DL LF+ FG I V+ DR T +
Sbjct: 41 IASSRPVARFAGLSMQELDPNKCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGR 100
Query: 100 SRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
SRG F+ F + D +A A+ + GRTV
Sbjct: 101 SRGFGFVTFAESADCEAAITAMDKANIGGRTV 132
>gi|113475531|ref|YP_721592.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110166579|gb|ABG51119.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 89
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+VYV NL Y T+ DL T F+ +G + RV V DR T + RG AF++ + +A
Sbjct: 2 SVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIEG 61
Query: 121 IHGKVLNGRTVNASIA 136
+ G L GR + + A
Sbjct: 62 LDGSELMGRILKVNKA 77
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181
>gi|336376609|gb|EGO04944.1| hypothetical protein SERLA73DRAFT_174031 [Serpula lacrymans var.
lacrymans S7.3]
Length = 583
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 40 VTSSGPHKKSKGSGGL-------APSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTV 91
+T S +K G G L AP + +YV +L + LT SD+ +F FG++ V +
Sbjct: 330 LTESERNKLHPGDGNLNLPPGVSAPHGAMQLYVGSLHFNLTESDIKQVFEPFGELEFVDL 389
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA 142
+D T +S+G AF+Q+ + DA A + G L GRT+ + + G A
Sbjct: 390 HRDPMTGRSKGYAFVQYKRAEDARMALEQMEGFELAGRTLRVNTVHEKGTA 440
>gi|332038856|gb|ACX54788.2| putative arginine/serine-rich splicing factor [Arachis diogoi]
gi|357018296|gb|AET50931.1| SR-protein [Arachis diogoi]
gi|414005520|gb|AFW97328.1| SR protein [Arachis diogoi]
Length = 181
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD +T DL F FG I V V R+ G AFI F DA A R
Sbjct: 2 SRVYVGNLDSRVTERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDSRDARDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS-RCYECGDEGHLSYEC 170
+ GK NG V S + G + +CYECG+ GH + EC
Sbjct: 57 ELDGK--NGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
>gi|154341861|ref|XP_001566882.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064207|emb|CAM40405.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 214
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
GS G A + ++++V +LD T++DL F++ G I RVTVLKDR +G A+++F
Sbjct: 67 GSSGQARTNTSIFVGDLDLRTTDADLRVFFASCGAITRVTVLKDRQG-NPKGTAYVEFET 125
Query: 111 IPDALSAARAIHGKVLNGRTVNASIAADN 139
A AA G+ L+G+ + ++ DN
Sbjct: 126 EAQA-QAAVLKDGQSLHGKPLRVAMKRDN 153
>gi|62858583|ref|NP_001016352.1| poly(A) binding protein, nuclear 1-like (cytoplasmic) [Xenopus
(Silurana) tropicalis]
gi|89266764|emb|CAJ81799.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
gi|111305754|gb|AAI21547.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
Length = 218
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 34 SSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93
S +A + GP + K +VYV N+DY T DL FS+ G I R+T+L
Sbjct: 67 SKMTAGAYTEGPPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILC 126
Query: 94 DRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
D+ + +G A+I+F + +++ A A+ V GRT+
Sbjct: 127 DKFSGHPKGYAYIEFAE-RNSVDVAVAMDETVFRGRTI 163
>gi|317027210|ref|XP_003188595.1| nucleolin protein Nsr1 [Aspergillus niger CBS 513.88]
Length = 536
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 38 ADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT 97
A+ +S KKSK + + ++V NL + + + L + F +FG+++ V ++ +R T
Sbjct: 263 AEEETSATPKKSKTEDPAPGASANLFVGNLSWNVDEAWLQSEFESFGELSGVRIMTERDT 322
Query: 98 RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDK--S 155
+SRG ++++ DA A A G ++GR +N A GR ++ ++ +KD+ +
Sbjct: 323 GRSRGFGYVEYTNAVDAAKAFEAKKGAEIDGRVINLDYA--TGRPANKDQQGGFKDRANA 380
Query: 156 RCYECGDE----------GHLSYECPRNQLG 176
R GD+ G+L ++ + +G
Sbjct: 381 RARSFGDQASPESDTLFVGNLPFDANEDSVG 411
>gi|317027208|ref|XP_001400395.2| nucleolin protein Nsr1 [Aspergillus niger CBS 513.88]
Length = 539
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 38 ADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT 97
A+ +S KKSK + + ++V NL + + + L + F +FG+++ V ++ +R T
Sbjct: 266 AEEETSATPKKSKTEDPAPGASANLFVGNLSWNVDEAWLQSEFESFGELSGVRIMTERDT 325
Query: 98 RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDK--S 155
+SRG ++++ DA A A G ++GR +N A GR ++ ++ +KD+ +
Sbjct: 326 GRSRGFGYVEYTNAVDAAKAFEAKKGAEIDGRVINLDYA--TGRPANKDQQGGFKDRANA 383
Query: 156 RCYECGDE----------GHLSYECPRNQLG 176
R GD+ G+L ++ + +G
Sbjct: 384 RARSFGDQASPESDTLFVGNLPFDANEDSVG 414
>gi|307200277|gb|EFN80545.1| THO complex subunit 4 [Harpegnathos saltator]
Length = 248
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 36 SSADVTSSGPHK-----KSKGSGGLAPSKST-VYVSNLDYALTNSDLHTLFSTFGKIARV 89
+ DV S+ H K G G + +T + VSNLD+ +++SD+ LFS FG +
Sbjct: 68 TRGDVNSAWKHDMFDGVKKVGRGAIGNVGTTKLLVSNLDFGVSDSDIQELFSEFGPLKSA 127
Query: 90 TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
V DR+ R S G A + F + DA+ A + HG L+GR +N +A
Sbjct: 128 AVHYDRSGR-SLGSADVIFERRADAIKAMKQYHGVPLDGREMNIQVA 173
>gi|186532595|ref|NP_001119461.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009874|gb|AED97257.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 211
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 32 PSSSSSADVTS--SGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV 89
P S+ D+ S S H+ + S G+ + + +Y+SNLDY + N D+ LF+ G++ R
Sbjct: 59 PESTWGHDMFSDRSEDHRSGRSSAGIE-TGTKLYISNLDYGVMNEDIKELFAEVGELKRY 117
Query: 90 TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139
TV DR+ R S+G A + + + DAL+A + + L+G+ + I N
Sbjct: 118 TVHFDRSGR-SKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTN 166
>gi|168061025|ref|XP_001782492.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666045|gb|EDQ52711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NLD T +L F +G + V V RK G AFI+F DA A R
Sbjct: 2 SRVYVGNLDPRATERELEDEFRVYGVLRSVWV-----GRKPPGFAFIEFEDRRDADDAIR 56
Query: 120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
A++GK NG V S ++ G D +CYECG+ GH + EC
Sbjct: 57 ALNGK--NGWRVELSRSSGGGGGPRGRGG----DDMKCYECGEPGHFAREC 101
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NL + + N L LFS GK+ V+ DR T +SRG F+ + + A A+
Sbjct: 227 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 286
Query: 122 HGKVLNGRTVNASIAAD 138
G+ L GR + ++A +
Sbjct: 287 DGQNLEGRAIRVNVAEE 303
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ ++V NL Y + + L LF G + V+ +R T +SRG F+ + +A +A
Sbjct: 130 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 189
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCY 158
+ LNGR + + AA G RVY+ R Y
Sbjct: 190 EKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVY 228
>gi|116624848|ref|YP_827004.1| RNP-1 like RNA-binding protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116228010|gb|ABJ86719.1| RNP-1 like RNA-binding protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 97
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL + T + LF T GK+ RV + DR + + RG F++ +A A A+
Sbjct: 4 IFVGNLSFGATEDTVRALFETHGKVDRVNICTDRDSGQPRGFGFVEMANDSEAEKAISAV 63
Query: 122 HGKVLNGRTVNASIA 136
+GK L+GR +N + A
Sbjct: 64 NGKELDGRALNVNEA 78
>gi|212722094|ref|NP_001132794.1| uncharacterized protein LOC100194283 [Zea mays]
gi|194695412|gb|ACF81790.1| unknown [Zea mays]
gi|224035575|gb|ACN36863.1| unknown [Zea mays]
gi|413939271|gb|AFW73822.1| hypothetical protein ZEAMMB73_600026 [Zea mays]
gi|413939272|gb|AFW73823.1| hypothetical protein ZEAMMB73_600026 [Zea mays]
gi|413939273|gb|AFW73824.1| hypothetical protein ZEAMMB73_600026 [Zea mays]
gi|448878150|gb|AGE46038.1| arginine/serine-rich splicing factor RSZ20 transcript I [Zea mays]
gi|448878152|gb|AGE46039.1| arginine/serine-rich splicing factor RSZ20 transcript II [Zea mays]
gi|448878154|gb|AGE46040.1| arginine/serine-rich splicing factor RSZ20 transcript III [Zea
mays]
gi|448878156|gb|AGE46041.1| arginine/serine-rich splicing factor RSZ20 transcript IV [Zea mays]
Length = 173
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T+ +L F FG + V + RK G AFI F DA A R +
Sbjct: 4 VYVGNLDSRVTSGELEDEFRVFGVLRSVWI-----ARKPPGFAFIDFDDRRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S + + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELS----RNSSGRGGRDRYGGSESKCYECGETGHFAREC 101
>gi|336389603|gb|EGO30746.1| hypothetical protein SERLADRAFT_455043 [Serpula lacrymans var.
lacrymans S7.9]
Length = 583
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 40 VTSSGPHKKSKGSGGL-------APSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTV 91
+T S +K G G L AP + +YV +L + LT SD+ +F FG++ V +
Sbjct: 330 LTESERNKLHPGDGNLNLPPGVSAPHGAMQLYVGSLHFNLTESDIKQVFEPFGELEFVDL 389
Query: 92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA 142
+D T +S+G AF+Q+ + DA A + G L GRT+ + + G A
Sbjct: 390 HRDPMTGRSKGYAFVQYKRAEDARMALEQMEGFELAGRTLRVNTVHEKGTA 440
>gi|319902685|ref|YP_004162413.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
gi|319417716|gb|ADV44827.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
Length = 102
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 6/78 (7%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y++ L+++ T++DL+ LFS +G+++ V+ DR T +SRG A FV++PD +A +AI
Sbjct: 3 IYIAGLNFSTTDADLNDLFSEYGEVSSARVITDRETGRSRGFA---FVEMPDDEAAQKAI 59
Query: 122 ---HGKVLNGRTVNASIA 136
+G + +T++ ++A
Sbjct: 60 DELNGAEYDNKTISVNVA 77
>gi|224100725|ref|XP_002311989.1| predicted protein [Populus trichocarpa]
gi|222851809|gb|EEE89356.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ ++V L + +T L F FGKI V+ +R T + RG FI F A
Sbjct: 2 ENRIFVGGLSWDITERQLENAFDRFGKIVECQVMLERDTGRPRGFGFITFADRRAMDDAI 61
Query: 119 RAIHGKVLNGRTVNASIA--------ADNGRASSFIKKRVYKD--------KSRCYECGD 162
R +HG+ R ++ + A +D+G + + C++CG
Sbjct: 62 REMHGRDFGDRVISVNKAQPKMGGDDSDHGYRGGYSTGSRGGYGGGDRPAGQDECFKCGR 121
Query: 163 EGHLSYECP 171
GH + +CP
Sbjct: 122 SGHWARDCP 130
>gi|38048103|gb|AAR09954.1| similar to Drosophila melanogaster aly, partial [Drosophila yakuba]
Length = 164
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIP 112
GG P++ + V NLDY ++N+D+ LF+ FG + + V DR+ R S G A + F +
Sbjct: 2 GGSGPTR--LIVGNLDYGVSNTDIKELFNDFGPMKKAAVHYDRSGR-SLGTADVIFERRA 58
Query: 113 DALSAARAIHGKVLNGRTVNASIAADN------GRASSFIKKRVYKDKSRCYECG 161
DAL A + HG L+GR + +A + A++ +K+RV S ++ G
Sbjct: 59 DALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGAASAPFKRG 113
>gi|13877739|gb|AAK43947.1|AF370132_1 unknown protein [Arabidopsis thaliana]
Length = 804
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +Y+ L L + L LFS+FG+I V+KDR T S+G F+++ + A +A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 119 RAIHGKVLNGRTVNASIAA 137
+A++G GRT+ IA
Sbjct: 539 QAMNGYRFEGRTLAVRIAG 557
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV N+ + + ++ L LFS GK+ V+ DR T +SRG F+ + A +
Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291
Query: 122 HGKVLNGRTVNASIAADNGRASSF 145
G+ L+GRT+ ++A D R ++F
Sbjct: 292 DGQSLDGRTIRVNVAEDRSRRNTF 315
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y + + L LF G + V+ +R T +SRG F+ + +A A
Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197
Query: 122 HGKVLNGRTVNASIAADNG 140
+ +NGR + + AA G
Sbjct: 198 NRYDVNGRLLTVNKAARRG 216
>gi|71414344|ref|XP_809277.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873635|gb|EAN87426.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 601
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++VS L ++T+++L+ F +G+I V+ D T KSRG+AF++F ++ +A AA
Sbjct: 236 RSNLFVSGLHASVTDNELYKHFHPYGEIESAKVMLDIHTGKSRGIAFVKFKEVANAEKAA 295
Query: 119 RAIHGKVLNGRTVNASIA 136
++ V +G T+ +A
Sbjct: 296 EEMNNSVFHGETIAVRVA 313
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL Y T ++L ++FS G + V ++ D+ T +SRG AF+ +A A +
Sbjct: 123 IYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQMF 182
Query: 122 HGKVLNGRTVNASI 135
+G +L GRT+ +
Sbjct: 183 NGALLGGRTIRVNF 196
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VY NL + + L T F + V+ +R T +SRG F+ F + DA +A +A+
Sbjct: 227 VYAGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAM 286
Query: 122 HGKVLNGRTVNASIAADNGRASS 144
G L+GR + S+A+ N A S
Sbjct: 287 DGVELDGRPLRLSLASQNPPAGS 309
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +++ L + L FS FG+I V V++DR T +SRG F+ ++ +A A
Sbjct: 37 SKLFIGGLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSYITDQEAQKAME 96
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G+VL+GRT+ + A
Sbjct: 97 AMDGRVLDGRTIRVNYA 113
>gi|302543566|ref|ZP_07295908.1| RNA-binding protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461184|gb|EFL24277.1| RNA-binding protein [Streptomyces himastatinicus ATCC 53653]
Length = 86
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y T DL LF+ FG + TV+ DR T +SRG F++ + DA A +
Sbjct: 5 LHVGNLSYQTTKDDLEKLFAPFGAVMDATVITDRDTGRSRGFGFVEMADM-DAEKAMAQL 63
Query: 122 HGKVLNGRTVNASIA 136
G+ +NGR V + A
Sbjct: 64 DGQEMNGRCVTVTEA 78
>gi|15241418|ref|NP_199943.1| splicing factor 1 [Arabidopsis thaliana]
gi|30696034|ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana]
gi|79330558|ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana]
gi|8843867|dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana]
gi|23297082|gb|AAN13087.1| unknown protein [Arabidopsis thaliana]
gi|222423074|dbj|BAH19518.1| AT5G51300 [Arabidopsis thaliana]
gi|222423561|dbj|BAH19750.1| AT5G51300 [Arabidopsis thaliana]
gi|332008680|gb|AED96063.1| splicing factor 1 [Arabidopsis thaliana]
gi|332008681|gb|AED96064.1| splicing factor 1 [Arabidopsis thaliana]
gi|332008682|gb|AED96065.1| splicing factor 1 [Arabidopsis thaliana]
Length = 804
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +Y+ L L + L LFS+FG+I V+KDR T S+G F+++ + A +A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 119 RAIHGKVLNGRTVNASIAA 137
+A++G GRT+ IA
Sbjct: 539 QAMNGYRFEGRTLAVRIAG 557
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|71407577|ref|XP_806247.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70869937|gb|EAN84396.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 601
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+S ++VS L ++T+++L+ F +G+I V+ D T KSRG+AF++F ++ +A AA
Sbjct: 236 RSNLFVSGLHASVTDNELYKHFHPYGEIESAKVMLDIHTGKSRGIAFVKFKEVANAEKAA 295
Query: 119 RAIHGKVLNGRTVNASIA 136
++ V +G T+ +A
Sbjct: 296 EEMNNSVFHGETIAVRVA 313
>gi|336386223|gb|EGO27369.1| hypothetical protein SERLADRAFT_446592 [Serpula lacrymans var.
lacrymans S7.9]
Length = 338
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 30 ANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV 89
AN +S+ +D SG +++ L+ S+S V+V N+DY T ++ F G I RV
Sbjct: 57 ANGGTSTESD---SGVPMETEEEKALSDSRS-VFVGNVDYGATPEEIQAHFQACGTINRV 112
Query: 90 TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134
T+L D+ T +G A+++F + PD + AA A+ + GR + S
Sbjct: 113 TILCDKFTGHPKGYAYVEFAE-PDFIDAALAMDNSLFRGRLIKTS 156
>gi|189219581|ref|YP_001940222.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
gi|189186439|gb|ACD83624.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
Length = 117
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
A + + +YV NL Y LT+SDL +F+ G I V +++DR + +++G F++ + A
Sbjct: 27 AVTSNKLYVGNLPYNLTDSDLFEIFAKIGPIKNVEIVRDRKSNRTKGFGFVEMADLDSAR 86
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASS 144
AA ++G + GR + + A + + SS
Sbjct: 87 KAATVLNGIEIMGRRIIVTGAKSDRKDSS 115
>gi|299469902|emb|CBN76756.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 774
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
STVYV NLD ++T D+ F+ G IA V + +D+ T K RG+AF+ F + L A
Sbjct: 316 STVYVGNLDPSVTEDDIREFFAECGAIASVRIPQDKETGKMRGIAFVAFAKHSGVLQAL- 374
Query: 120 AIHGKVLNGRTV 131
+H L G++V
Sbjct: 375 TLHMDDLKGQSV 386
>gi|297795935|ref|XP_002865852.1| hypothetical protein ARALYDRAFT_495202 [Arabidopsis lyrata subsp.
lyrata]
gi|297311687|gb|EFH42111.1| hypothetical protein ARALYDRAFT_495202 [Arabidopsis lyrata subsp.
lyrata]
Length = 798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +Y+ L L + L LFS+FG+I V+KDR T S+G F+++ + A +A
Sbjct: 474 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 533
Query: 119 RAIHGKVLNGRTVNASIAA 137
+A++G GRT+ IA
Sbjct: 534 QAMNGYRFEGRTLAVRIAG 552
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|224071049|ref|XP_002303346.1| predicted protein [Populus trichocarpa]
gi|222840778|gb|EEE78325.1| predicted protein [Populus trichocarpa]
Length = 164
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
P S + V+N+ ++++ + L FS FG+IA V ++KD ++S+ AFIQ+ DA+
Sbjct: 51 PLASRIMVTNIGHSISEATLQKEFSNFGEIAEVKLVKDETIKRSKPYAFIQYTSQDDAIL 110
Query: 117 AARAIHGKVLNGRTVNASIA 136
A + K L+GR + +A
Sbjct: 111 ALENMDRKTLDGRLIFVDLA 130
>gi|148223950|ref|NP_001086215.1| THO complex subunit 4-B [Xenopus laevis]
gi|82236414|sp|Q6GLW1.1|THO4B_XENLA RecName: Full=THO complex subunit 4-B; Short=Tho4-B; AltName:
Full=Aly/REF export factor-B
gi|49257659|gb|AAH74336.1| MGC84169 protein [Xenopus laevis]
Length = 256
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G+G + + VSNLD+ ++++D+ LF+ FG + + V DR+ R S G A + F +
Sbjct: 96 GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGR-SLGTADVHFER 154
Query: 111 IPDALSAARAIHGKVLNGRTVNASIA 136
DAL A + +G L+GR++N +
Sbjct: 155 KADALKAMKQYNGVPLDGRSMNIQLV 180
>gi|453085264|gb|EMF13307.1| nuclear cap binding protein subunit 2 [Mycosphaerella populorum
SO2202]
Length = 177
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 21 RYASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLF 80
+Y PA+ + SA S +K + + +T+YV NL + T +H+LF
Sbjct: 18 KYKKRKRNPADEPTDGSARAASPDLEEKLQNA-------TTLYVGNLSFYTTEEQIHSLF 70
Query: 81 STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135
ST G+I R+ + DR + G F+++ DAL + + G L+ R + +
Sbjct: 71 STCGEIKRLVMGLDRFAKTPCGFCFVEYYTHEDALDCLKYVGGTKLDERIIRTDL 125
>gi|357163035|ref|XP_003579604.1| PREDICTED: uncharacterized protein LOC100833136 [Brachypodium
distachyon]
Length = 749
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +Y+ L +S L LFS FG+I V+KDR T +S+G F+++ + A +A
Sbjct: 427 ETNLYIGYLPPMFDDSGLINLFSQFGEIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAI 486
Query: 119 RAIHGKVLNGRTVNASIA 136
A+ G L GRT+ +A
Sbjct: 487 AAMSGYHLEGRTIAVRVA 504
>gi|327289700|ref|XP_003229562.1| PREDICTED: RNA-binding protein 4B-like [Anolis carolinensis]
Length = 354
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISTGCTNLELRFKFEEYGPVLECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ + ++ R + + DKS CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMRVQLSTSRLRTAPGMG-----DKSGCYRCGKEGHWSKECPVDRTG 181
>gi|354568213|ref|ZP_08987379.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353541178|gb|EHC10648.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 103
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ T+YV NL Y+ T DL +F+ +G++ RV + DR T + RG AF++ + +A
Sbjct: 11 QMTIYVGNLSYSATEEDLKAVFAEYGQVKRVVLPTDRDTGRLRGFAFVEMNEDTQEEAAI 70
Query: 119 RAIHGKVLNGRTVNASIA---ADNGRASSFIKK 148
+ G GR + + A DN R SS+ K+
Sbjct: 71 TELDGAEWMGRQLKVNKARPREDNRRGSSWAKR 103
>gi|350411267|ref|XP_003489292.1| PREDICTED: protein sex-lethal-like [Bombus impatiens]
Length = 356
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +YV+NL +T S + +FS +G I + +LKD+ T RGVAF++F + +A A
Sbjct: 170 ETNLYVTNLPRNITESQIDDIFSKYGNIVQKNILKDKLTGLPRGVAFVRFDKREEAQEAI 229
Query: 119 RAIHGKVLNG--RTVNASIAADNGR 141
+HG + G ++ IA ++G+
Sbjct: 230 ARLHGTIPEGGSEPLSVKIAEEHGK 254
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ + ++ L ++T DL++LF T G + V+KD T S G F+ + + DA +A
Sbjct: 84 RTNLIINYLPQSMTEKDLYSLFVTIGPVESCRVMKDYKTGYSYGFGFVNYAKAEDAATAI 143
Query: 119 RAIHGKVLNGRTVNASIAADNG 140
++G + + + S A +G
Sbjct: 144 STLNGLQVQNKRLKVSFARPSG 165
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%)
Query: 31 NPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVT 90
NP+++S+ +VT+ S P +++YV LD ++T + L+ LFS+ G++A +
Sbjct: 23 NPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 91 VLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129
V +D TR+S G A++ + D A ++ ++ G+
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGK 121
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ V++ NLD A+ N LH F+ FG I V +D S+G F+ + A +A
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAI 197
Query: 119 RAIHGKVLNGRTV 131
+ ++G +LN + V
Sbjct: 198 KHVNGMLLNDKKV 210
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ VY+ N+D +T+ + +F FG+I T+ +D+ KSRG F+ F A +A
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEG-KSRGFGFVNFSTHDSAQAAVD 291
Query: 120 AIHGKVLNGRTV 131
++ K + G+ +
Sbjct: 292 EMNDKEIKGQKL 303
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL + + ++ L +FS GK+ V+ DR T +SRG F+ + A A+
Sbjct: 217 MYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAAL 276
Query: 122 HGKVLNGRTVNASIAADNGRASSF 145
G+ L+GR + ++A D R +SF
Sbjct: 277 DGQSLDGRAIRVNVAEDRPRRASF 300
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
L P ++ ++V NL Y + + L LF G + V+ +R T +SRG F+ + +A
Sbjct: 116 LPPEEAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEA 175
Query: 115 LSAARAIHGKVLNGRTVNASIAADNG 140
A + +NGR + + AA G
Sbjct: 176 EKAVEMFNRYDINGRLLTVNKAAPRG 201
>gi|340729596|ref|XP_003403084.1| PREDICTED: protein sex-lethal-like [Bombus terrestris]
Length = 356
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +YV+NL +T S + +FS +G I + +LKD+ T RGVAF++F + +A A
Sbjct: 170 ETNLYVTNLPRNITESQIDDIFSKYGNIVQKNILKDKLTGLPRGVAFVRFDKREEAQEAI 229
Query: 119 RAIHGKVLNG--RTVNASIAADNGR 141
+HG + G ++ IA ++G+
Sbjct: 230 ARLHGTIPEGGSEPLSVKIAEEHGK 254
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ + ++ L ++T DL++LF T G + V+KD T S G F+ + + DA +A
Sbjct: 84 RTNLIINYLPQSMTEKDLYSLFVTIGPVESCRVMKDYKTGYSYGFGFVNYAKAEDAATAI 143
Query: 119 RAIHGKVLNGRTVNASIAADNG 140
++G + + + S A +G
Sbjct: 144 STLNGLQVQNKRLKVSFARPSG 165
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S +YV NL Y++T+S L +F+ G + V ++ DR T +SRG AF+ + +A A R
Sbjct: 246 SRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIR 305
Query: 120 AIHGKVLNGRTVNASI 135
G + GRTV +
Sbjct: 306 MFDGSQVGGRTVKVNF 321
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD 113
G S +Y NL + LT+ L F+ + V+ +R + +SRG F+ F +
Sbjct: 343 GFVDSPYKIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAEN 402
Query: 114 ALSAARAIHGKVLNGRTVNASIAA 137
A SA A+ + GR + ++AA
Sbjct: 403 AESALNAMBEVEVEGRPLRLNLAA 426
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NL ++ T+ L FS +G++ V++DR T +SRG F+ F +A +A ++
Sbjct: 5 VYVGNLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAINSL 64
Query: 122 HGKVLNGRTVNASIA 136
H + L+GR + ++A
Sbjct: 65 HEQDLDGRRIKVNLA 79
>gi|326505708|dbj|BAJ95525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 226
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+V NL ++ T+ L FS +GK+ V+ D+ + +SRG AF+ F + A +
Sbjct: 9 CFVGNLSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKAMEEAIEDM 68
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSR------------------------- 156
+G L GR + A G R + D+ R
Sbjct: 69 NGLDLEGRAITVDKAQPQGVGRDRNGDRDF-DRDRGSRGDRGRDYGGGRAPRGGSGGGGD 127
Query: 157 CYECGDEGHLSYECP 171
C++CG GH + ECP
Sbjct: 128 CFKCGKPGHFARECP 142
>gi|307180346|gb|EFN68372.1| THO complex subunit 4 [Camponotus floridanus]
Length = 247
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 36 SSADVTSSGPHK-----KSKGSGGLAPSKST-VYVSNLDYALTNSDLHTLFSTFGKIARV 89
+ DV S+ H K G G + + +T + VSNLD+ +++SD+ LFS FG +
Sbjct: 66 TRGDVNSAWKHDMFDGVKKVGRGVIGNAGTTKLLVSNLDFGVSDSDIQELFSEFGPLKSA 125
Query: 90 TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
V DR+ R S G A + F + DA+ A + HG L+GR +N +A
Sbjct: 126 AVHYDRSGR-SLGSADVIFERRADAIKAMKQYHGVPLDGREMNIQVA 171
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|388513995|gb|AFK45059.1| unknown [Medicago truncatula]
Length = 229
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 23 ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFST 82
ST NA PS + AD T ++ +++V V+NL DLH LF T
Sbjct: 118 VSTNNAYVPPSLRAGADRTGGSDMRRRN-------DENSVRVTNLSEDTREPDLHELFGT 170
Query: 83 FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
FG ++RV V D+ T SRG F+ FV DA A ++G
Sbjct: 171 FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKLNG 211
>gi|21751099|dbj|BAC03903.1| unnamed protein product [Homo sapiens]
Length = 201
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F DA A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIAADNG 140
A+ G VL+GR + +A G
Sbjct: 74 AMDGAVLDGRELRVQMARCGG 94
>gi|41054475|ref|NP_955945.1| serine/arginine-rich splicing factor 2b [Danio rerio]
gi|28278933|gb|AAH45480.1| Zgc:55876 [Danio rerio]
Length = 218
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F DA A
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G +L+GR + +A
Sbjct: 74 AMDGAILDGRELRVQMA 90
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 23 ASTGNAPANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFST 82
A G APA A V +S P+ SG PS S +YV LD +T + L +F+
Sbjct: 20 AQDGAAPAPQVVQPPAPVHASMPYSVPPASGASTPSAS-LYVGELDSTVTEAMLFEIFNM 78
Query: 83 FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129
G +A + V +D TR+S G A++ ++ D A ++ ++ R
Sbjct: 79 IGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKNR 125
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+ +YV NLD +T+ + + +F+ FG++ V KD KS+G F+ F A +A
Sbjct: 237 TNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEG-KSKGFGFVNFKDHESAQAAVD 295
Query: 120 AIHGKVLNGRTV 131
A+H LNG+ +
Sbjct: 296 ALHDTELNGKKL 307
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
+ +++ NLD + + LH F+ FG + V D R SRG F+ + A +A
Sbjct: 143 QGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGR-SRGFGFVHYDTAEAADTAI 201
Query: 119 RAIHGKVLNGRTV 131
+A++G +LN + V
Sbjct: 202 KAVNGMLLNDKKV 214
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|444730999|gb|ELW71367.1| Heterogeneous nuclear ribonucleoprotein G-like 1 [Tupaia chinensis]
Length = 107
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L L +F +G+I V ++KD KSRG AF+ F DA AAR +
Sbjct: 10 LFIGELKTETNEKALEAIFGKYGRIVEVLLMKDHEINKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIAADNG 140
+GK L+G+ + + D G
Sbjct: 70 NGKSLDGKAIKEEMQRDVG 88
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
S VYV NL + T+ L + F FG+I V++DR T +SRG F+ F +A SA +
Sbjct: 3 SKVYVGNLSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAIQ 62
Query: 120 AIHGKVLNGRTVNASIA 136
A++ + L+GR + ++A
Sbjct: 63 ALNDQELDGRRIKVNLA 79
>gi|170055898|ref|XP_001863788.1| RNA-binding protein [Culex quinquefasciatus]
gi|167875756|gb|EDS39139.1| RNA-binding protein [Culex quinquefasciatus]
Length = 263
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ +Y++NL +T+ L +F +G I + +L+D+ T RGVAF++F + +A A
Sbjct: 151 ETNLYITNLPRTITDEQLDIIFGKYGTIVQKNILRDKLTGHPRGVAFVRFNKREEAQEAI 210
Query: 119 RAIHGKVLNG--RTVNASIAADNGRASS 144
A++ + G + +N IA D+GRA +
Sbjct: 211 SALNNVIPQGSNQPLNVRIADDHGRAKA 238
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
+Y+ NL Y+L+ +L F+ FG++ R ++ D+ T +S+G F++ +A +A +
Sbjct: 2 NIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAIDS 61
Query: 121 IHGKVLNGRTVNASIA 136
+H LNGR++ + A
Sbjct: 62 LHDSDLNGRSIKVNQA 77
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
>gi|358055852|dbj|GAA98197.1| hypothetical protein E5Q_04880 [Mixia osmundae IAM 14324]
Length = 545
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
V+V L + +TN L F + G+I V+ DR T KSRG ++ FV A AA +
Sbjct: 290 VFVGGLSWGITNESLQEAFESCGEIVSARVVTDRETGKSRGFGYVDFVDAAGA-KAALEM 348
Query: 122 HGKVLNGRTVNASIAA 137
G L+GRT+N ++A
Sbjct: 349 AGTELDGRTINVDLSA 364
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
APS+ TV+V NL + T + FS FG + V V D T + +G A+++F + A
Sbjct: 386 APSQ-TVFVGNLSFESTQDAVWESFSDFGGVNSVRVPTDMETGRPKGFAYVEFGDVDSAK 444
Query: 116 SA---ARAIHGKVLNGRTV 131
A R+ G ++GR V
Sbjct: 445 KAVDQGRSSEGLEIDGRRV 463
>gi|336373392|gb|EGO01730.1| hypothetical protein SERLA73DRAFT_70899 [Serpula lacrymans var.
lacrymans S7.3]
Length = 346
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 30 ANPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV 89
AN +S+ +D SG +++ L+ S+S V+V N+DY T ++ F G I RV
Sbjct: 57 ANGGTSTESD---SGVPMETEEEKALSDSRS-VFVGNVDYGATPEEIQAHFQACGTINRV 112
Query: 90 TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135
T+L D+ T +G A+++F + PD + AA A+ + GR + +
Sbjct: 113 TILCDKFTGHPKGYAYVEFAE-PDFIDAALAMDNSLFRGRLIKVGV 157
>gi|340054247|emb|CCC48543.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 213
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 50 KGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV 109
KG+G ++++V LD T SDL FS G I R+T+L+D+ T + +G ++I+F
Sbjct: 54 KGTGSSTIKNTSIFVGGLDPRTTESDLRVFFSGCGAIKRLTMLRDKFTGQLKGTSYIEFE 113
Query: 110 QIPDALSAARAIHGKVLNGRTVNASIAADN 139
+ A + A +G+ L+GR + ++ DN
Sbjct: 114 TVEQA-NIALVKNGQSLHGRPLVVAVKRDN 142
>gi|298710792|emb|CBJ32209.1| RNA-binding protein SiahBP [Ectocarpus siliculosus]
Length = 696
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 23 ASTGNAPANPSSSSSADVT--SSGPHKKSKGSGG---LAPSKST----VYVSNLDYALTN 73
A+ G AP S S+ A + G ++ G+G AP++ + +YV +L Y L
Sbjct: 241 AAMGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPSNPRRIYVGSLHYELKE 300
Query: 74 SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131
SD+ ++F+ FG + V + D +T + +G FI++V + A +A RA++G L GR +
Sbjct: 301 SDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAI 358
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS-RGVAFIQFVQIPDA 114
AP+++ +YV N++ +T + T+F FG + +++D + + +G FIQ+ Q A
Sbjct: 422 APAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVA 481
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGR 141
+ + L GRT+ + A D +
Sbjct: 482 RTVIDTMSSFELAGRTLRVAWAQDQSK 508
>gi|338706322|ref|YP_004673090.1| putative RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|378972859|ref|YP_005221463.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973926|ref|YP_005222532.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378974988|ref|YP_005223596.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981835|ref|YP_005230140.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421880|ref|YP_005631239.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059746|gb|ADD72481.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|335344383|gb|AEH40299.1| probable RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|374677182|gb|AEZ57475.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678252|gb|AEZ58544.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679321|gb|AEZ59612.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680386|gb|AEZ60676.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
Length = 89
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NL+YA T + L +LFS FG++ V V+KD+ T++S+G F++ A +
Sbjct: 5 IYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVINEL 64
Query: 122 HGKVLNGRTVNASIAADNGR 141
+ K GR + + A + R
Sbjct: 65 NEKEFEGRRLRVNYAEEKPR 84
>gi|308274216|emb|CBX30815.1| Putative RNA-binding protein rbpA [uncultured Desulfobacterium sp.]
Length = 94
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+Y+ NL A T L TLF FG + V V+KD T K +G FI+ +A A +A+
Sbjct: 3 IYIGNLSIATTEETLKTLFVEFGNVETVKVIKDNFTGKPKGFGFIEMPSNSEADQAIKAL 62
Query: 122 HGKVLNGRTVNASIAADNGR 141
+GK ++G + + A G+
Sbjct: 63 NGKRIDGNNIKVNPADPGGK 82
>gi|336257891|ref|XP_003343767.1| hypothetical protein SMAC_04425 [Sordaria macrospora k-hell]
gi|380091605|emb|CCC10737.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 344
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 31 NPSSSSSADVTSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVT 90
+P+ + A G K + G P S ++V+ + L +++ LF +G++ +
Sbjct: 46 SPNGNDRAPAKDEGQSKGGEEDGARNPG-SNLFVTGIHPRLEEAEVTRLFEKYGEVEKCQ 104
Query: 91 VLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
++KD T +SRG F++ V A +A + G+V+ GRT++ +A
Sbjct: 105 IMKDPHTGESRGFGFVKMVTPEQAQAAKDGLQGEVIEGRTLSIEMA 150
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,190,982,803
Number of Sequences: 23463169
Number of extensions: 176745060
Number of successful extensions: 638380
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13434
Number of HSP's successfully gapped in prelim test: 8208
Number of HSP's that attempted gapping in prelim test: 607485
Number of HSP's gapped (non-prelim): 34442
length of query: 258
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 119
effective length of database: 9,097,814,876
effective search space: 1082639970244
effective search space used: 1082639970244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)