BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025055
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/131 (61%), Positives = 102/131 (77%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DLH +FS +GK+ +VT+LKD+ +RKS+GV+F+ F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + R ++ K L GR + ASIA DNGRA+ FI++R Y DKSRCYECGD GHLSY CP
Sbjct: 62 ESAQNCVRGLNNKQLFGRAIKASIAKDNGRATEFIRRRNYTDKSRCYECGDTGHLSYACP 121
Query: 172 RNQLGPRERPM 182
+N LG RE P
Sbjct: 122 KNMLGEREPPQ 132
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 101/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
AL+ RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 174 bits (440), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSN+ ++LTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+
Sbjct: 2 SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + +R+++ K L GR V ASIA DNGRA+ FI+KR Y DKS+CYECG+EGHLSY CP
Sbjct: 62 ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGEEGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNLLGER 128
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLGPR 178
+N LG R
Sbjct: 122 KNMLGER 128
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 100/125 (80%)
Query: 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111
SGGLAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+
Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 112 PDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
A + RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP
Sbjct: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
Query: 172 RNQLG 176
+N LG
Sbjct: 122 KNMLG 126
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
S++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 38 SETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 92
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 93 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
++ VYV NL +L FS +G + V + R G AF++F DA A
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYEC 170
R + GKV+ G V ++ R S F + +R + RCYECG++GH +Y+C
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T +L F FG + V V RK G AFI F DA A R I
Sbjct: 4 VYVGNLDPRVTARELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAQDAIRDI 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S A +GR + R +S+CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELSRNASSGRGG---RDRYGSSESKCYECGETGHFAREC 102
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F ++ DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
+A + ++V L + L +FS +G+I+ V V+KDR T++SRG F+ F I DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 115 LSAARAIHGKVLNGRTV---NASIAADN 139
A A++GK ++GR + A ++DN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
VYV NLD +T ++ F FG + V V RK G AFI F DA A R +
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAEDAIRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC 170
GK NG V S A +GR + R +CYECG+ GH + EC
Sbjct: 59 DGK--NGWRVELSTKAGSGRG----RDRSGGSDMKCYECGEPGHFAREC 101
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ T L +FS +G++A V V+KDR +++SRG F+ F DA
Sbjct: 1 MSCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A A++GK ++GR + A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ + L FS FG+I+ V ++KDR T KSRG AF+ + DA AAR +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKPLDGKPIKVEQA 84
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
P ST ++V N+ + TN +L F +G + ++KD AF+ ++ DA+
Sbjct: 74 PKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAM 125
Query: 116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
A + G+ ++ ++ R + + +R + CY CG EGH S ECP +Q
Sbjct: 126 EAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGER-----TGCYRCGQEGHWSKECPLDQN 180
Query: 176 GP-RERPMPKKLRRRSDGEDESEFDDGG 202
G RE P S+G FD GG
Sbjct: 181 GSYREGP-------SSEGFGPVRFDSGG 201
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL T ++ +LFS +GKI+ ++K+ F+ +A A + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--------FGFVHMDSKSEADEAIQNL 55
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRC 157
H +LNG +N ++ G+ + K V S C
Sbjct: 56 HHYMLNGMAMNVEMS--KGKPKTSTKLHVGNISSSC 89
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F FG +ARV +++DR T+KSRG AF+ F + DA +A + +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRV-----YKDKSRCYECGDEG 164
+G +L+G+ + A S KKR + SR +CG G
Sbjct: 70 NGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGG 117
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L + L T+FS +G+I V V+KDR T++SRG F+ F DA
Sbjct: 1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A ++GK ++GR + A
Sbjct: 61 KDAMAGMNGKTVDGRQIRVDQAG 83
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L T+F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
A RA++G+ L+GR + A + R +
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAA 137
A RA++G+ L+GR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAG 83
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G++ V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKALDGKPIKVEQA 84
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L +FS +G+I+ V V+KDR T++SRG F+ F DA A A+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 67 NGKAVDGRQIRVDQAG 82
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
++ + ++V L++ L FS+FG I+ V V+KDR T++SRG FI F A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
RA++G+ L+GR + A + R +
Sbjct: 61 SDVMRAMNGESLDGRQIRVDHAGKSARGT 89
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V NL Y+ DL +FS FGKI+ + + D ++KS+G+AFI ++ +A+ A +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 122 HGKVLNGRTVNA 133
GKV GR ++
Sbjct: 423 DGKVFQGRLIHV 434
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 47 KKSKGSGGLAPSK--STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA 104
K+S S G P+K S + + NL + T ++ LF+ +G+I V + K + RG
Sbjct: 780 KQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPK-KPNGGHRGFG 838
Query: 105 FIQFVQIPDALSAARAIHGKVLNGRTV 131
F++F+ +A +A A+ GR +
Sbjct: 839 FVEFLTEEEAKNAMEALGNSHFYGRHL 865
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ 110
G+ G S + + V N+ + +LH LFS FG+++RV + +R +A I+++
Sbjct: 544 GNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL------SPARTIALIEYIH 597
Query: 111 IPDA 114
+A
Sbjct: 598 PNEA 601
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVL-----KDRATRKSRGVAFIQFVQIPDALS 116
VY+ NL++ TN L F + V + K+ + R G FI+F A
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKR 149
+ ++G ++G ++ ++ N I KR
Sbjct: 740 CIKKLNGSSIDGYEISLKLSDKNETNVQEINKR 772
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L++ L F+ +G+I+ V V+KDR T++SRG F+ F + DA A A+
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 122 HGKVLNGRTVNASIAA 137
+GK ++GR + A
Sbjct: 67 NGKSVDGRQIRVDQAG 82
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I V ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I+ V ++KDR T KSRG AFI F DA +A R +
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>sp|A7SKE9|EIF3G_NEMVE Eukaryotic translation initiation factor 3 subunit G
OS=Nematostella vectensis GN=v1g171563 PE=3 SV=1
Length = 294
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 29 PANPSS-SSSADVTSSGPHKKSKGSGGLAPSKS------TVYVSNLDYALTNSDLHTLFS 81
PANP++ S+S + G + G PS+S T+ V+NL SDL LF
Sbjct: 174 PANPAAASTSGKYVAPGLRDGANRRGETMPSRSQRDETATIRVTNLSEETRESDLQELFR 233
Query: 82 TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128
G I+R+ + KD+ T +S+G AFI FV D AARAI +VL+G
Sbjct: 234 PLGPISRIFLAKDKFTNQSKGFAFINFVHRED---AARAI--EVLSG 275
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AAR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+YV NLD +T+ +L F FG + V V RK G AFI F DA A R +
Sbjct: 4 LYVGNLDPRVTSGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 58
Query: 122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGP 177
GK NG V S + +S + R + +CYECG+ GH + EC R ++GP
Sbjct: 59 DGK--NGWRVELSRNS----SSRGGRDRHGGSEMKCYECGETGHFAREC-RLRIGP 107
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 41 TSSGPHKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKS 100
+S+GP GS L S ++V L + +S L F++FG++ TV+ DR T +S
Sbjct: 18 SSNGPVTSMLGS--LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75
Query: 101 RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRA--SSF 145
RG F+ F A +A + + GK LNGR + ++A + A SSF
Sbjct: 76 RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSF 122
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
++V L+ L F +G I +V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTV 131
+GK L+G+ +
Sbjct: 70 NGKYLDGKAI 79
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
K +VYV N+DY T DL FS+ G I R+T+L D+ + +G A+I+F + +++ AA
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER-NSVDAA 150
Query: 119 RAIHGKVLNGRTV 131
A+ V GRT+
Sbjct: 151 VAMDETVFRGRTI 163
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F DA A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G VL+GR + +A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G I +V ++KDR T KSRG AF+ F DA +AAR +
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 122 HGKVLNGRTV 131
+GK L+G+ +
Sbjct: 70 NGKYLDGKAI 79
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L +F +G+I + ++KDR T KSRG AF+ F DA AR +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
+++ L+ L F +G+I V ++KDR T KSRG AF+ F +A +AAR +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDM 69
Query: 122 HGKVLNGRTVNASIA 136
+GK L+G+ + + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
+++ V NL Y + L +F +G++ V + +DR T++SRG AF++F DA A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 120 AIHGKVLNGRTVNASIA 136
A+ G VL+GR + +A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
+ + ++V N+ TN +L F +G + ++KD AF+ + DA+ A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
R + G+ ++ ++ R + + D+S CY CG EGH S ECP ++ G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD---ALSAA 118
+++ NL T ++ +LF +GK+ ++K+ FV I D A A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----------FVHIEDKTAAEDAI 52
Query: 119 RAIHGKVLNGRTVNASIAADNGRASS 144
R +H L+G +N + + +AS+
Sbjct: 53 RNLHHYKLHGVNINVEASKNKSKAST 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,921,396
Number of Sequences: 539616
Number of extensions: 4235283
Number of successful extensions: 14655
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 316
Number of HSP's that attempted gapping in prelim test: 13058
Number of HSP's gapped (non-prelim): 1636
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)