Query 025055
Match_columns 258
No_of_seqs 391 out of 2517
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 1E-20 2.3E-25 170.1 14.6 84 55-138 103-186 (346)
2 PLN03134 glycine-rich RNA-bind 99.8 7.3E-20 1.6E-24 145.3 16.7 87 56-142 31-117 (144)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.6E-20 5.5E-25 168.3 12.0 81 58-138 2-82 (352)
4 KOG0107 Alternative splicing f 99.8 1.3E-18 2.9E-23 137.9 13.0 111 57-172 8-118 (195)
5 KOG0127 Nucleolar protein fibr 99.8 1.3E-19 2.9E-24 164.8 8.0 84 59-142 5-88 (678)
6 TIGR01645 half-pint poly-U bin 99.8 5.5E-19 1.2E-23 167.6 11.1 80 57-136 105-184 (612)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 6E-18 1.3E-22 152.8 15.0 85 57-141 267-351 (352)
8 TIGR01622 SF-CC1 splicing fact 99.8 1.2E-17 2.7E-22 156.0 15.2 81 56-137 86-166 (457)
9 TIGR01628 PABP-1234 polyadenyl 99.7 1.3E-17 2.8E-22 159.8 12.2 77 61-137 2-78 (562)
10 KOG0117 Heterogeneous nuclear 99.7 4.9E-17 1.1E-21 145.1 12.4 89 51-139 75-164 (506)
11 KOG0127 Nucleolar protein fibr 99.7 5.8E-17 1.3E-21 147.7 12.7 86 56-142 114-199 (678)
12 PF00076 RRM_1: RNA recognitio 99.7 1.4E-16 3.1E-21 110.0 9.9 70 62-132 1-70 (70)
13 KOG0113 U1 small nuclear ribon 99.7 4.9E-16 1.1E-20 132.5 15.1 97 56-153 98-194 (335)
14 KOG0145 RNA-binding protein EL 99.7 1.3E-16 2.7E-21 133.9 11.1 84 56-139 38-121 (360)
15 KOG0122 Translation initiation 99.7 2.8E-16 6.1E-21 130.7 12.8 83 57-139 187-269 (270)
16 KOG1457 RNA binding protein (c 99.7 2.9E-15 6.3E-20 123.3 17.3 185 57-258 32-240 (284)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 7.1E-16 1.5E-20 145.2 15.5 79 56-139 272-351 (481)
18 TIGR01648 hnRNP-R-Q heterogene 99.7 1.7E-16 3.7E-21 150.3 11.0 79 56-135 55-134 (578)
19 KOG0131 Splicing factor 3b, su 99.7 1.1E-16 2.3E-21 127.8 8.1 82 56-137 6-87 (203)
20 KOG0121 Nuclear cap-binding pr 99.7 2.2E-16 4.8E-21 119.3 8.0 90 56-145 33-122 (153)
21 KOG0144 RNA-binding protein CU 99.7 7.1E-16 1.5E-20 137.2 11.4 82 56-137 31-115 (510)
22 KOG0149 Predicted RNA-binding 99.7 1.6E-16 3.5E-21 131.6 6.9 80 58-138 11-90 (247)
23 TIGR01659 sex-lethal sex-letha 99.6 2.3E-15 4.9E-20 135.6 13.8 85 58-142 192-278 (346)
24 KOG0109 RNA-binding protein LA 99.6 4.8E-16 1E-20 132.2 7.7 72 60-139 3-74 (346)
25 KOG0125 Ataxin 2-binding prote 99.6 2.2E-15 4.8E-20 130.1 11.7 82 56-139 93-174 (376)
26 KOG4207 Predicted splicing fac 99.6 2.1E-15 4.5E-20 122.7 10.6 82 59-140 13-94 (256)
27 PF14259 RRM_6: RNA recognitio 99.6 3E-15 6.4E-20 103.9 10.0 70 62-132 1-70 (70)
28 KOG0148 Apoptosis-promoting RN 99.6 1.7E-15 3.7E-20 127.7 9.4 82 59-140 62-143 (321)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 3.5E-15 7.6E-20 140.5 11.3 76 58-139 1-78 (481)
30 PLN03120 nucleic acid binding 99.6 5.5E-15 1.2E-19 126.1 10.8 76 59-138 4-79 (260)
31 TIGR01645 half-pint poly-U bin 99.6 5.8E-15 1.3E-19 140.3 11.8 84 58-141 203-286 (612)
32 KOG0109 RNA-binding protein LA 99.6 2.3E-15 4.9E-20 128.2 7.7 111 56-179 75-185 (346)
33 TIGR01628 PABP-1234 polyadenyl 99.6 8.7E-15 1.9E-19 140.4 11.8 83 56-139 175-261 (562)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.1E-14 6.7E-19 134.8 15.3 84 56-139 292-375 (509)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.7E-14 3.8E-19 136.5 13.2 74 56-136 172-257 (509)
36 KOG0130 RNA-binding protein RB 99.6 4.4E-15 9.5E-20 113.3 7.3 86 56-141 69-154 (170)
37 PLN03213 repressor of silencin 99.6 7.7E-15 1.7E-19 132.7 9.9 79 57-139 8-88 (759)
38 KOG0126 Predicted RNA-binding 99.6 3.1E-16 6.7E-21 125.2 0.8 83 56-138 32-114 (219)
39 KOG0111 Cyclophilin-type pepti 99.6 1.5E-15 3.2E-20 124.7 4.1 83 57-139 8-90 (298)
40 TIGR01622 SF-CC1 splicing fact 99.6 1.8E-14 3.9E-19 134.7 11.6 83 57-139 184-266 (457)
41 smart00362 RRM_2 RNA recogniti 99.5 6.6E-14 1.4E-18 95.8 9.4 72 61-134 1-72 (72)
42 PLN03121 nucleic acid binding 99.5 5.7E-14 1.2E-18 118.2 10.6 78 57-138 3-80 (243)
43 KOG0114 Predicted RNA-binding 99.5 1.4E-13 2.9E-18 100.6 9.8 81 56-139 15-95 (124)
44 COG0724 RNA-binding proteins ( 99.5 8.6E-14 1.9E-18 119.1 10.4 80 59-138 115-194 (306)
45 KOG0148 Apoptosis-promoting RN 99.5 8.4E-14 1.8E-18 117.6 9.8 81 55-141 160-240 (321)
46 TIGR01648 hnRNP-R-Q heterogene 99.5 3.3E-13 7.2E-18 128.1 14.9 77 58-142 232-310 (578)
47 KOG0105 Alternative splicing f 99.5 1.2E-13 2.5E-18 110.9 9.7 81 57-140 4-84 (241)
48 smart00360 RRM RNA recognition 99.5 1.3E-13 2.8E-18 94.0 8.5 71 64-134 1-71 (71)
49 KOG0108 mRNA cleavage and poly 99.5 1.2E-13 2.5E-18 126.8 8.4 82 60-141 19-100 (435)
50 KOG0124 Polypyrimidine tract-b 99.5 2.1E-14 4.5E-19 125.7 3.2 76 60-135 114-189 (544)
51 cd00590 RRM RRM (RNA recogniti 99.5 7.7E-13 1.7E-17 90.9 10.1 74 61-135 1-74 (74)
52 KOG0146 RNA-binding protein ET 99.5 7.6E-14 1.7E-18 117.7 5.9 87 55-141 281-367 (371)
53 KOG0145 RNA-binding protein EL 99.5 6.6E-13 1.4E-17 111.7 10.8 83 57-139 276-358 (360)
54 KOG0415 Predicted peptidyl pro 99.4 3.1E-12 6.8E-17 111.7 11.4 85 55-139 235-319 (479)
55 KOG0144 RNA-binding protein CU 99.4 6.1E-13 1.3E-17 118.7 6.0 83 57-140 122-207 (510)
56 smart00361 RRM_1 RNA recogniti 99.4 3.6E-12 7.9E-17 88.7 8.1 61 73-133 2-69 (70)
57 KOG0117 Heterogeneous nuclear 99.4 4.3E-12 9.3E-17 113.8 10.2 78 58-143 258-335 (506)
58 PF13893 RRM_5: RNA recognitio 99.3 7.6E-12 1.7E-16 83.1 8.4 56 76-136 1-56 (56)
59 KOG0147 Transcriptional coacti 99.3 1.4E-12 3.1E-17 119.5 6.4 83 60-142 279-361 (549)
60 KOG0123 Polyadenylate-binding 99.3 5.2E-12 1.1E-16 114.7 8.6 73 60-138 2-74 (369)
61 KOG0110 RNA-binding protein (R 99.3 9E-12 2E-16 117.2 10.3 78 60-137 516-596 (725)
62 KOG4212 RNA-binding protein hn 99.3 5E-11 1.1E-15 106.8 13.6 81 58-139 43-124 (608)
63 KOG4205 RNA-binding protein mu 99.3 5.4E-12 1.2E-16 111.3 5.9 82 58-140 5-86 (311)
64 KOG0131 Splicing factor 3b, su 99.3 1E-11 2.2E-16 99.5 6.4 86 56-141 93-179 (203)
65 KOG4206 Spliceosomal protein s 99.3 1.7E-11 3.7E-16 101.5 7.7 81 58-141 8-92 (221)
66 KOG4661 Hsp27-ERE-TATA-binding 99.2 5.9E-11 1.3E-15 109.3 11.7 85 56-140 402-486 (940)
67 KOG4208 Nucleolar RNA-binding 99.2 5E-11 1.1E-15 97.4 8.4 84 56-139 46-130 (214)
68 KOG0132 RNA polymerase II C-te 99.2 1.2E-10 2.6E-15 110.6 11.8 79 59-143 421-499 (894)
69 KOG0123 Polyadenylate-binding 99.2 1E-10 2.2E-15 106.2 10.0 75 62-139 79-153 (369)
70 KOG0116 RasGAP SH3 binding pro 99.1 1.6E-09 3.5E-14 99.1 14.7 83 58-141 287-369 (419)
71 KOG0110 RNA-binding protein (R 99.1 7.9E-11 1.7E-15 111.0 5.8 85 57-141 611-695 (725)
72 KOG0106 Alternative splicing f 99.0 5.3E-10 1.1E-14 93.3 6.6 72 60-139 2-73 (216)
73 KOG0124 Polypyrimidine tract-b 99.0 8.1E-10 1.8E-14 97.2 7.4 79 59-137 210-288 (544)
74 KOG4205 RNA-binding protein mu 99.0 1.8E-09 3.8E-14 95.4 8.0 84 58-142 96-179 (311)
75 KOG4209 Splicing factor RNPS1, 99.0 3.1E-09 6.7E-14 90.5 9.2 83 56-139 98-180 (231)
76 KOG0533 RRM motif-containing p 99.0 3.2E-09 7E-14 90.4 8.9 84 56-140 80-163 (243)
77 KOG0146 RNA-binding protein ET 98.9 2.3E-09 5E-14 90.9 6.8 81 58-139 18-101 (371)
78 KOG4211 Splicing factor hnRNP- 98.9 6E-09 1.3E-13 94.9 10.0 77 58-138 9-85 (510)
79 KOG0153 Predicted RNA-binding 98.9 6.6E-09 1.4E-13 90.9 8.5 76 57-138 226-302 (377)
80 KOG0151 Predicted splicing reg 98.9 5.5E-09 1.2E-13 98.6 8.3 89 50-138 165-256 (877)
81 KOG1548 Transcription elongati 98.9 1.8E-08 3.8E-13 88.3 10.8 85 56-141 131-223 (382)
82 KOG0147 Transcriptional coacti 98.9 1E-09 2.2E-14 101.0 3.0 81 56-137 176-256 (549)
83 KOG4212 RNA-binding protein hn 98.9 6.1E-09 1.3E-13 93.6 7.6 78 54-136 531-608 (608)
84 KOG1190 Polypyrimidine tract-b 98.8 1.6E-07 3.4E-12 84.0 14.4 77 59-140 297-374 (492)
85 PF04059 RRM_2: RNA recognitio 98.8 4.9E-08 1.1E-12 71.9 9.3 81 60-140 2-88 (97)
86 KOG4454 RNA binding protein (R 98.7 6.2E-09 1.3E-13 86.0 2.1 81 56-138 6-86 (267)
87 KOG0226 RNA-binding proteins [ 98.7 1E-08 2.2E-13 86.4 3.1 85 57-141 188-272 (290)
88 KOG4660 Protein Mei2, essentia 98.6 7.4E-08 1.6E-12 89.1 5.4 72 56-132 72-143 (549)
89 KOG1995 Conserved Zn-finger pr 98.5 6.6E-07 1.4E-11 79.0 9.9 86 56-141 63-156 (351)
90 KOG0120 Splicing factor U2AF, 98.5 2.6E-07 5.6E-12 86.0 6.2 86 56-141 286-371 (500)
91 KOG4210 Nuclear localization s 98.3 4.4E-07 9.6E-12 79.8 4.4 82 60-142 185-267 (285)
92 PF11608 Limkain-b1: Limkain b 98.3 2.9E-06 6.3E-11 60.1 7.6 68 60-137 3-75 (90)
93 KOG1457 RNA binding protein (c 98.2 1.5E-06 3.2E-11 72.2 5.1 68 56-127 207-274 (284)
94 KOG4849 mRNA cleavage factor I 98.2 8.1E-06 1.7E-10 71.9 8.7 77 58-134 79-157 (498)
95 KOG4206 Spliceosomal protein s 98.1 1.4E-05 3E-10 66.6 8.2 79 54-137 141-220 (221)
96 KOG4211 Splicing factor hnRNP- 98.0 2.2E-05 4.8E-10 72.0 7.2 77 58-136 102-179 (510)
97 PF08777 RRM_3: RNA binding mo 97.9 2.2E-05 4.7E-10 58.9 5.9 71 59-135 1-76 (105)
98 COG5175 MOT2 Transcriptional r 97.9 3E-05 6.5E-10 68.2 6.6 82 56-137 111-201 (480)
99 KOG0128 RNA-binding protein SA 97.9 1.8E-06 3.8E-11 83.6 -1.3 63 59-121 667-729 (881)
100 KOG1456 Heterogeneous nuclear 97.9 0.00024 5.1E-09 63.4 11.7 81 54-139 282-363 (494)
101 KOG0106 Alternative splicing f 97.8 1.3E-05 2.8E-10 67.2 3.1 72 56-135 96-167 (216)
102 KOG2314 Translation initiation 97.8 8.9E-05 1.9E-09 69.2 7.9 80 57-137 56-142 (698)
103 KOG3152 TBP-binding protein, a 97.7 2E-05 4.4E-10 66.8 2.9 73 58-130 73-157 (278)
104 KOG0120 Splicing factor U2AF, 97.6 0.00026 5.7E-09 66.2 8.5 134 55-256 171-316 (500)
105 KOG2416 Acinus (induces apopto 97.6 0.00033 7.2E-09 65.8 8.6 78 55-138 440-521 (718)
106 KOG1548 Transcription elongati 97.5 0.00035 7.6E-09 61.7 8.0 81 56-140 262-353 (382)
107 KOG1190 Polypyrimidine tract-b 97.5 0.00029 6.2E-09 63.6 7.5 80 55-138 410-490 (492)
108 KOG0129 Predicted RNA-binding 97.5 0.0005 1.1E-08 63.7 8.1 65 56-120 367-432 (520)
109 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00036 7.8E-09 45.6 5.3 52 60-118 2-53 (53)
110 KOG1365 RNA-binding protein Fu 97.4 0.00021 4.6E-09 63.9 5.1 78 59-137 280-360 (508)
111 KOG4307 RNA binding protein RB 97.4 0.00061 1.3E-08 65.2 7.7 75 60-135 868-943 (944)
112 KOG2193 IGF-II mRNA-binding pr 97.4 0.00022 4.8E-09 64.5 4.6 74 60-139 2-76 (584)
113 KOG0112 Large RNA-binding prot 97.3 6.4E-05 1.4E-09 73.5 0.6 79 56-135 369-447 (975)
114 KOG0129 Predicted RNA-binding 97.3 0.00095 2.1E-08 61.9 7.9 66 56-122 256-327 (520)
115 PF08952 DUF1866: Domain of un 97.3 0.0019 4.1E-08 50.8 8.6 77 56-141 24-109 (146)
116 KOG0105 Alternative splicing f 97.2 0.0063 1.4E-07 49.6 11.2 72 58-136 114-187 (241)
117 KOG1456 Heterogeneous nuclear 97.2 0.012 2.6E-07 52.8 13.8 79 56-139 117-199 (494)
118 KOG0112 Large RNA-binding prot 97.2 0.00048 1E-08 67.5 5.1 81 55-141 451-533 (975)
119 KOG0128 RNA-binding protein SA 97.1 0.00046 9.9E-09 67.3 4.3 79 59-138 736-814 (881)
120 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.004 8.7E-08 46.1 8.0 77 59-137 6-90 (100)
121 KOG1855 Predicted RNA-binding 97.0 0.00079 1.7E-08 61.1 3.9 68 56-123 228-308 (484)
122 KOG4676 Splicing factor, argin 96.8 0.0043 9.2E-08 55.9 7.0 77 61-138 9-88 (479)
123 KOG1996 mRNA splicing factor [ 96.7 0.0057 1.2E-07 53.2 6.9 64 74-137 301-365 (378)
124 KOG2202 U2 snRNP splicing fact 96.6 0.00091 2E-08 57.0 1.6 61 76-137 85-146 (260)
125 KOG4307 RNA binding protein RB 96.5 0.0023 4.9E-08 61.4 3.5 83 54-137 429-512 (944)
126 PF08675 RNA_bind: RNA binding 96.4 0.02 4.3E-07 40.8 6.9 55 59-122 9-63 (87)
127 KOG1365 RNA-binding protein Fu 96.3 0.0035 7.6E-08 56.3 3.3 72 60-133 162-237 (508)
128 KOG2068 MOT2 transcription fac 96.2 0.0016 3.5E-08 57.5 0.7 84 56-139 74-163 (327)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.021 4.6E-07 46.8 6.5 80 58-137 6-96 (176)
130 KOG2253 U1 snRNP complex, subu 95.9 0.013 2.7E-07 56.2 5.0 77 50-135 31-107 (668)
131 KOG0115 RNA-binding protein p5 95.8 0.013 2.8E-07 50.1 4.2 76 60-136 32-111 (275)
132 PF10309 DUF2414: Protein of u 95.7 0.066 1.4E-06 36.0 6.6 55 59-121 5-62 (62)
133 PF07576 BRAP2: BRCA1-associat 95.6 0.18 3.9E-06 38.0 9.5 67 60-128 14-81 (110)
134 PF03880 DbpA: DbpA RNA bindin 95.3 0.12 2.6E-06 35.9 7.2 67 61-136 2-74 (74)
135 KOG4210 Nuclear localization s 95.1 0.037 7.9E-07 48.9 4.9 117 58-176 87-203 (285)
136 PF15023 DUF4523: Protein of u 95.0 0.15 3.2E-06 40.1 7.5 73 56-136 83-159 (166)
137 KOG2135 Proteins containing th 94.8 0.023 5E-07 52.4 3.0 78 56-140 369-447 (526)
138 KOG0114 Predicted RNA-binding 94.8 0.011 2.4E-07 43.8 0.7 23 232-257 24-46 (124)
139 KOG4660 Protein Mei2, essentia 94.6 0.055 1.2E-06 50.9 4.9 84 58-141 360-475 (549)
140 KOG4574 RNA-binding protein (c 94.4 0.064 1.4E-06 52.9 5.0 75 59-139 298-374 (1007)
141 PF04847 Calcipressin: Calcipr 94.2 0.19 4.2E-06 41.4 7.0 62 72-139 8-71 (184)
142 KOG2591 c-Mpl binding protein, 94.0 0.1 2.2E-06 49.2 5.3 70 56-132 172-245 (684)
143 KOG0804 Cytoplasmic Zn-finger 91.9 0.67 1.5E-05 42.9 7.4 70 57-128 72-142 (493)
144 PF00076 RRM_1: RNA recognitio 91.6 0.058 1.3E-06 36.0 0.2 23 232-257 4-26 (70)
145 KOG4285 Mitotic phosphoprotein 91.0 0.96 2.1E-05 39.8 7.1 70 61-138 199-269 (350)
146 KOG2318 Uncharacterized conser 88.9 2 4.3E-05 41.1 7.8 81 56-136 171-305 (650)
147 PRK11634 ATP-dependent RNA hel 87.3 13 0.00029 36.5 13.0 71 60-139 487-563 (629)
148 PLN03134 glycine-rich RNA-bind 86.0 0.24 5.1E-06 39.2 0.1 23 232-257 40-62 (144)
149 PF11767 SET_assoc: Histone ly 85.9 5.7 0.00012 27.0 6.8 55 70-133 11-65 (66)
150 KOG4410 5-formyltetrahydrofola 83.6 4.7 0.0001 35.4 6.8 52 54-111 325-377 (396)
151 PF00098 zf-CCHC: Zinc knuckle 80.5 1.4 3.1E-05 21.8 1.6 17 156-172 2-18 (18)
152 PF14259 RRM_6: RNA recognitio 79.9 0.84 1.8E-05 30.6 0.9 22 232-256 4-25 (70)
153 KOG4676 Splicing factor, argin 78.5 0.32 6.9E-06 44.2 -2.0 75 59-138 151-225 (479)
154 KOG4483 Uncharacterized conser 76.7 5.9 0.00013 36.4 5.4 56 58-120 390-446 (528)
155 smart00362 RRM_2 RNA recogniti 75.2 0.91 2E-05 29.5 -0.0 22 232-256 5-26 (72)
156 smart00360 RRM RNA recognition 73.9 1.7 3.6E-05 28.0 1.0 22 232-256 2-23 (71)
157 KOG4365 Uncharacterized conser 71.9 0.99 2.1E-05 41.7 -0.6 78 60-138 4-81 (572)
158 COG0724 RNA-binding proteins ( 70.3 5.1 0.00011 33.3 3.5 64 56-119 222-285 (306)
159 PF03468 XS: XS domain; Inter 69.7 5.5 0.00012 30.3 3.1 56 61-119 10-75 (116)
160 KOG4454 RNA binding protein (R 69.4 0.94 2E-05 38.2 -1.2 68 58-126 79-150 (267)
161 smart00596 PRE_C2HC PRE_C2HC d 68.6 12 0.00025 25.7 4.2 61 74-137 2-63 (69)
162 PF07530 PRE_C2HC: Associated 67.2 13 0.00027 25.4 4.2 62 74-138 2-64 (68)
163 cd00590 RRM RRM (RNA recogniti 65.2 1.9 4.2E-05 28.0 -0.1 22 232-256 5-26 (74)
164 KOG2193 IGF-II mRNA-binding pr 60.2 0.41 8.9E-06 44.0 -5.4 74 59-136 80-154 (584)
165 KOG2295 C2H2 Zn-finger protein 58.1 1.6 3.6E-05 41.4 -2.0 73 57-129 229-301 (648)
166 PF10567 Nab6_mRNP_bdg: RNA-re 56.8 32 0.00069 30.5 5.7 82 56-137 12-106 (309)
167 PF13917 zf-CCHC_3: Zinc knuck 52.5 9.8 0.00021 23.4 1.4 19 154-172 4-22 (42)
168 KOG0125 Ataxin 2-binding prote 48.4 4.9 0.00011 35.9 -0.5 29 212-257 96-124 (376)
169 KOG1295 Nonsense-mediated deca 48.4 26 0.00056 32.1 4.0 68 59-126 7-77 (376)
170 KOG2891 Surface glycoprotein [ 47.4 19 0.00042 31.5 3.0 67 59-125 149-246 (445)
171 KOG4019 Calcineurin-mediated s 46.3 16 0.00035 29.9 2.2 76 60-141 11-92 (193)
172 KOG0122 Translation initiation 45.0 19 0.00042 31.0 2.5 23 232-257 195-217 (270)
173 PF15513 DUF4651: Domain of un 44.6 54 0.0012 22.0 4.1 19 74-92 9-27 (62)
174 COG5638 Uncharacterized conser 43.8 1.4E+02 0.003 27.9 7.9 81 56-136 143-295 (622)
175 PRK11901 hypothetical protein; 39.6 1.9E+02 0.004 26.1 8.0 63 56-123 242-306 (327)
176 PRK14548 50S ribosomal protein 37.2 1.5E+02 0.0033 21.1 6.6 56 62-120 23-80 (84)
177 TIGR03636 L23_arch archaeal ri 34.0 1.6E+02 0.0036 20.5 6.6 57 61-120 15-73 (77)
178 PF07292 NID: Nmi/IFP 35 domai 32.3 29 0.00064 25.0 1.5 25 56-80 49-73 (88)
179 COG0030 KsgA Dimethyladenosine 31.6 76 0.0017 27.7 4.2 34 60-93 96-129 (259)
180 PF09707 Cas_Cas2CT1978: CRISP 31.0 99 0.0021 22.1 4.0 49 58-109 24-72 (86)
181 KOG0132 RNA polymerase II C-te 30.5 95 0.0021 31.3 5.0 22 232-256 427-448 (894)
182 PF02714 DUF221: Domain of unk 27.6 53 0.0011 29.1 2.7 31 104-136 1-31 (325)
183 KOG4008 rRNA processing protei 27.1 57 0.0012 28.0 2.6 34 56-89 37-70 (261)
184 PF13696 zf-CCHC_2: Zinc knuck 27.1 33 0.00072 19.8 0.8 20 154-173 8-27 (32)
185 KOG0533 RRM motif-containing p 26.8 21 0.00046 30.8 -0.0 22 232-256 89-110 (243)
186 KOG0121 Nuclear cap-binding pr 26.8 21 0.00046 27.8 -0.0 22 232-256 42-63 (153)
187 PF03802 CitX: Apo-citrate lya 26.0 3.5E+02 0.0077 21.8 8.5 84 76-164 58-142 (170)
188 COG5193 LHP1 La protein, small 25.0 30 0.00065 31.9 0.6 61 59-119 174-244 (438)
189 KOG3424 40S ribosomal protein 24.6 2.1E+02 0.0046 21.8 5.0 46 70-116 34-84 (132)
190 PRK11230 glycolate oxidase sub 24.5 2.4E+02 0.0052 27.0 6.6 64 58-122 188-255 (499)
191 KOG0116 RasGAP SH3 binding pro 24.0 31 0.00067 32.3 0.5 23 232-257 294-316 (419)
192 KOG0156 Cytochrome P450 CYP2 s 23.7 1.3E+02 0.0028 28.8 4.6 59 63-131 36-97 (489)
193 PF00398 RrnaAD: Ribosomal RNA 23.3 81 0.0018 27.2 3.0 23 59-81 97-119 (262)
194 PF03439 Spt5-NGN: Early trans 22.2 1.6E+02 0.0035 20.6 3.9 36 85-125 33-68 (84)
195 PF05189 RTC_insert: RNA 3'-te 20.9 2.8E+02 0.006 20.0 5.1 49 61-109 12-65 (103)
196 PF04127 DFP: DNA / pantothena 20.8 3.2E+02 0.0068 22.4 5.9 59 61-121 20-79 (185)
197 PRK11558 putative ssRNA endonu 20.7 1.5E+02 0.0032 21.8 3.4 51 58-111 26-76 (97)
198 PF11823 DUF3343: Protein of u 20.3 1.2E+02 0.0026 20.5 2.8 26 103-128 3-28 (73)
199 smart00343 ZnF_C2HC zinc finge 20.2 65 0.0014 17.0 1.1 15 157-171 2-16 (26)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.85 E-value=1e-20 Score=170.14 Aligned_cols=84 Identities=26% Similarity=0.392 Sum_probs=79.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
.....++|||+|||+++|+++|+++|..||.|.+|+|+.|+.+++++|||||+|.+.++|..||+.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccC
Q 025055 135 IAAD 138 (258)
Q Consensus 135 ~a~~ 138 (258)
++++
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8753
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=7.3e-20 Score=145.33 Aligned_cols=87 Identities=29% Similarity=0.518 Sum_probs=81.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|.+||.|.+|.|+.++.|++++|||||+|.+.++|+.||+.||+..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
+.+++..
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876554
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.83 E-value=2.6e-20 Score=168.31 Aligned_cols=81 Identities=28% Similarity=0.521 Sum_probs=77.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
+.++|||+|||+.+++++|+++|+.||+|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 025055 138 D 138 (258)
Q Consensus 138 ~ 138 (258)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 4
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.3e-18 Score=137.91 Aligned_cols=111 Identities=30% Similarity=0.552 Sum_probs=92.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
+..++||||||+..+++.||+.+|..||+|..|.|..+ +.|||||+|+++.+|..|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34689999999999999999999999999999999765 4689999999999999999999999999999999999
Q ss_pred cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 025055 137 ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPR 172 (258)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 172 (258)
....+.......+...+...|+.||..||+.+.|-.
T Consensus 83 ~G~~r~~r~gg~~~~~g~~~~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 83 TGRPRGSRRGGSRPPRGRGFCYRCGERGHIGRNCKD 118 (195)
T ss_pred cCCccccccCCCCCcccccccccCCCcccccccccc
Confidence 877664332221122333448899999999887765
No 5
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.3e-19 Score=164.77 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=80.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
+.||||++||+.++.++|.++|+.+|+|.++.++.++.++.+|||+||+|.-.+++++|+..+.+..|.|+.|.|.+|+.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 025055 139 NGRA 142 (258)
Q Consensus 139 ~~~~ 142 (258)
+.+.
T Consensus 85 R~r~ 88 (678)
T KOG0127|consen 85 RARS 88 (678)
T ss_pred cccc
Confidence 7554
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.79 E-value=5.5e-19 Score=167.55 Aligned_cols=80 Identities=26% Similarity=0.487 Sum_probs=76.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+.+++++|+++|..||.|.+|+|+.|+.|++++|||||+|.+.++|..||..|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999843
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=6e-18 Score=152.83 Aligned_cols=85 Identities=22% Similarity=0.425 Sum_probs=80.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
..+.+|||+|||+.+++++|.++|++||.|.+|+|+.|+.|+.++|||||+|.+.++|..||..|||..|+|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 025055 137 ADNGR 141 (258)
Q Consensus 137 ~~~~~ 141 (258)
.++..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 87643
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.76 E-value=1.2e-17 Score=156.04 Aligned_cols=81 Identities=31% Similarity=0.567 Sum_probs=76.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||. |+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999997 899999999999987
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
+.
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 64
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.74 E-value=1.3e-17 Score=159.79 Aligned_cols=77 Identities=31% Similarity=0.512 Sum_probs=74.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
+|||+|||.++|+++|+++|+.||.|.+|+|++|..|++++|||||+|.+.++|.+||..||+..|.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999864
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=4.9e-17 Score=145.12 Aligned_cols=89 Identities=22% Similarity=0.422 Sum_probs=82.3
Q ss_pred CCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee-CCe
Q 025055 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL-NGR 129 (258)
Q Consensus 51 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l-~g~ 129 (258)
..+...+.++-||||.||.++.|++|.-+|++.|.|.+++|++|+.+|.+||||||+|.+.+.|+.||+.||+++| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 4444567889999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred EEEEEEccCC
Q 025055 130 TVNASIAADN 139 (258)
Q Consensus 130 ~l~V~~a~~~ 139 (258)
.|.|+.+..+
T Consensus 155 ~igvc~Svan 164 (506)
T KOG0117|consen 155 LLGVCVSVAN 164 (506)
T ss_pred EeEEEEeeec
Confidence 9999987654
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=5.8e-17 Score=147.70 Aligned_cols=86 Identities=29% Similarity=0.481 Sum_probs=78.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+...|+|.||||.+...+|..+|+.||.|..|.|+..+. |+..|||||+|....+|..||+.||+..|+||+|-|.|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 33468999999999999999999999999999999998775 55559999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
|-++...
T Consensus 193 AV~Kd~y 199 (678)
T KOG0127|consen 193 AVDKDTY 199 (678)
T ss_pred ecccccc
Confidence 9887654
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.4e-16 Score=110.03 Aligned_cols=70 Identities=39% Similarity=0.700 Sum_probs=67.2
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 62 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+|||||+|.+.++|..|+..|+|..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5789999999999999999999999999999999885
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=4.9e-16 Score=132.55 Aligned_cols=97 Identities=25% Similarity=0.493 Sum_probs=86.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+-+||||+-|+++++|..|+..|+.||+|+.|+||.|+.||+++|||||+|.+..++..|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccccCCC
Q 025055 136 AADNGRASSFIKKRVYKD 153 (258)
Q Consensus 136 a~~~~~~~~~~~~~~~~~ 153 (258)
-..+. -..|..++.+++
T Consensus 178 ERgRT-vkgW~PRRLGGG 194 (335)
T KOG0113|consen 178 ERGRT-VKGWLPRRLGGG 194 (335)
T ss_pred ccccc-ccccccccccCC
Confidence 65442 245655554443
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=133.91 Aligned_cols=84 Identities=29% Similarity=0.491 Sum_probs=80.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....+.|.|..||.++|+++|+.+|+..|.|.+|++++|+.+|.+-||+||.|.++.+|++||..|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|++.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9754
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.8e-16 Score=130.73 Aligned_cols=83 Identities=30% Similarity=0.456 Sum_probs=80.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|-|.||+.++++++|+++|..||.|..|+|.+|+.||.++|||||+|.+.++|.+||..|||+-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 16
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.69 E-value=2.9e-15 Score=123.25 Aligned_cols=185 Identities=19% Similarity=0.171 Sum_probs=114.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCcccEEEEEecchhHHHHHHHHhCCcee---CCeEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDR-ATRKSRGVAFIQFVQIPDALSAARAIHGKVL---NGRTVN 132 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l---~g~~l~ 132 (258)
..-+||||.+||.++...+|+.+|..|-....+.|.... ...-++-+|||+|.+...|.+|+..|||..| .+..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 345899999999999999999999998777766665432 2223568999999999999999999999998 478999
Q ss_pred EEEccCCCCCCcccccccCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCcCCCCCCCCCC----C--
Q 025055 133 ASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSY-----------ECPRNQLGPRERPMPKKLRRRSDGED----E-- 195 (258)
Q Consensus 133 V~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 195 (258)
|++|+.+.+..+..... -.+.+..+.....+-..+ ..|..-..+...+..+...--..... .
T Consensus 112 iElAKSNtK~kr~k~sg-tP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSG-TPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred eeehhcCcccccCCCCC-CCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 99999887654321111 111111111111110000 01111111111111111110000000 0
Q ss_pred CcCCCCCCcccc---cChHHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCcccccC
Q 025055 196 SEFDDGGWASVV---DGGAEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFIL 258 (258)
Q Consensus 196 ~e~~~~~~~~~~---d~~~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~~ 258 (258)
.....+.|.+.. ...+|..||| .||+..|+||. ||++||.+.||.||
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfi--------------anl~~~~~ed~--l~~~~~~~~gf~~l 240 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFI--------------ANLGPNCTEDE--LKQLLSRYPGFHIL 240 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhh--------------hccCCCCCHHH--HHHHHHhCCCceEE
Confidence 001124444432 2347999999 99999999999 99999999999875
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.68 E-value=7.1e-16 Score=145.23 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
.+++++|||+|||+ .+|+++|+++|+.||.|..|+|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999998863 5899999999999999999999999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.68 E-value=1.7e-16 Score=150.31 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=71.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC-CeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~-g~~l~V~ 134 (258)
....++|||+|||+++++++|.++|++||.|.+|+|++| .+++++|||||+|.+.++|+.||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 68999999999999999999999999998884 6666664
Q ss_pred E
Q 025055 135 I 135 (258)
Q Consensus 135 ~ 135 (258)
+
T Consensus 134 ~ 134 (578)
T TIGR01648 134 I 134 (578)
T ss_pred c
Confidence 3
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.68 E-value=1.1e-16 Score=127.85 Aligned_cols=82 Identities=30% Similarity=0.427 Sum_probs=78.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.....+||||||+..++++-|.++|-+.|+|.+++++.|+.+..++|||||+|.+.++|.-||+.||...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 75
No 20
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.2e-16 Score=119.29 Aligned_cols=90 Identities=29% Similarity=0.428 Sum_probs=80.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...+++||||||++.++|+.|.++|+.+|.|..|.+-.|+.+..+.|||||+|.+.++|..|++-++|..|+.++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcc
Q 025055 136 AADNGRASSF 145 (258)
Q Consensus 136 a~~~~~~~~~ 145 (258)
.-.--....+
T Consensus 113 D~GF~eGRQy 122 (153)
T KOG0121|consen 113 DAGFVEGRQY 122 (153)
T ss_pred cccchhhhhh
Confidence 6443333333
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=7.1e-16 Score=137.22 Aligned_cols=82 Identities=26% Similarity=0.509 Sum_probs=74.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce-eCC--eEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNG--RTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~-l~g--~~l~ 132 (258)
.....+||||.||..++|.||+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.. |-| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4556799999999999999999999999999999999999999999999999999999999999999854 544 5677
Q ss_pred EEEcc
Q 025055 133 ASIAA 137 (258)
Q Consensus 133 V~~a~ 137 (258)
|.+|.
T Consensus 111 vk~Ad 115 (510)
T KOG0144|consen 111 VKYAD 115 (510)
T ss_pred ecccc
Confidence 77764
No 22
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.6e-16 Score=131.60 Aligned_cols=80 Identities=25% Similarity=0.517 Sum_probs=74.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
.-++||||||+|.++.+.|+.+|++||.|++..|+.|+.||+++|||||+|.+.+.|.+|++.. .-.|+||+..|.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 3479999999999999999999999999999999999999999999999999999999999854 467999999999875
Q ss_pred C
Q 025055 138 D 138 (258)
Q Consensus 138 ~ 138 (258)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=2.3e-15 Score=135.64 Aligned_cols=85 Identities=31% Similarity=0.627 Sum_probs=78.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC--eEEEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVNASI 135 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g--~~l~V~~ 135 (258)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999866 7899999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
|....+.
T Consensus 272 a~~~~~~ 278 (346)
T TIGR01659 272 AEEHGKA 278 (346)
T ss_pred CCccccc
Confidence 9876554
No 24
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.64 E-value=4.8e-16 Score=132.24 Aligned_cols=72 Identities=25% Similarity=0.516 Sum_probs=68.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
.+|||||||..+++.+|+.+|.+||+|.+|.|+.+ ||||..++...+..||..|||..|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999976 9999999999999999999999999999999988766
No 25
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=2.2e-15 Score=130.05 Aligned_cols=82 Identities=28% Similarity=0.541 Sum_probs=76.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|+|+|||+...+.||+.+|.+||.|.+|.|+.+. .-+||||||+|++.++|.+|-..|||..|.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3445899999999999999999999999999999999873 56899999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 9865
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=2.1e-15 Score=122.75 Aligned_cols=82 Identities=35% Similarity=0.605 Sum_probs=78.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
-..|-|-||.+-++.++|+.+|++||.|-+|+|+.|+.|+.++|||||.|....+|+.|+++|+|.+|+|+.|.|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC
Q 025055 139 NG 140 (258)
Q Consensus 139 ~~ 140 (258)
..
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 27
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=3e-15 Score=103.94 Aligned_cols=70 Identities=39% Similarity=0.695 Sum_probs=65.1
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 62 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
|||+|||+++++++|.++|+.||.|..|.+..++. +..+|+|||+|.+.++|..|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 89999999999999999999999999999999875
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.7e-15 Score=127.71 Aligned_cols=82 Identities=29% Similarity=0.508 Sum_probs=79.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
...|||+-|...++-++|++.|.+||.|.+++|++|..|++++||+||.|.+.++|+.||..|||..|++|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 025055 139 NG 140 (258)
Q Consensus 139 ~~ 140 (258)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 64
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=3.5e-15 Score=140.54 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh--CCceeCCeEEEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI--HGKVLNGRTVNASI 135 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l--~g~~l~g~~l~V~~ 135 (258)
++++|||+|||+.+++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|..||..| ++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3579999999999999999999999999999999853 479999999999999999864 77899999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8653
No 30
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=5.5e-15 Score=126.07 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998753 57999999999999999996 999999999999999764
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=5.8e-15 Score=140.34 Aligned_cols=84 Identities=18% Similarity=0.384 Sum_probs=79.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
..++|||+|||+.+++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|..||..||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999988
Q ss_pred CCCC
Q 025055 138 DNGR 141 (258)
Q Consensus 138 ~~~~ 141 (258)
..+.
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6543
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=2.3e-15 Score=128.17 Aligned_cols=111 Identities=29% Similarity=0.591 Sum_probs=98.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|+||||.+.++..+|+..|.+||+|.+|.|+.| |+||.|.-.++|..||+.|++.+|.|++|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 345689999999999999999999999999999999975 999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025055 136 AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179 (258)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 179 (258)
+..+-+... .-++...||.||..|||+..||....+...
T Consensus 147 stsrlrtap-----gmgDq~~cyrcGkeghwskEcP~~~~~rva 185 (346)
T KOG0109|consen 147 STSRLRTAP-----GMGDQSGCYRCGKEGHWSKECPVDRTGRVA 185 (346)
T ss_pred eccccccCC-----CCCCHHHheeccccccccccCCccCCCccc
Confidence 987755433 346778999999999999999987776553
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=8.7e-15 Score=140.36 Aligned_cols=83 Identities=33% Similarity=0.576 Sum_probs=76.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC----CeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN----GRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~----g~~l 131 (258)
....++|||+|||..+|+++|+++|+.||.|.++.|+.+. ++.++|||||+|.+.++|..|++.|+|..|. |+.|
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3455789999999999999999999999999999999886 6899999999999999999999999999999 9999
Q ss_pred EEEEccCC
Q 025055 132 NASIAADN 139 (258)
Q Consensus 132 ~V~~a~~~ 139 (258)
.|.++..+
T Consensus 254 ~v~~a~~k 261 (562)
T TIGR01628 254 YVGRAQKR 261 (562)
T ss_pred EeecccCh
Confidence 99987654
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=3.1e-14 Score=134.80 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=79.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|..||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8644
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=1.7e-14 Score=136.52 Aligned_cols=74 Identities=14% Similarity=0.310 Sum_probs=62.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcC------------CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTF------------GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g 123 (258)
....++|||||||+.+|+++|.++|..| +.|..+.+ +..+|||||+|.+.++|..||. |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4456899999999999999999999875 23444444 3457899999999999999995 999
Q ss_pred ceeCCeEEEEEEc
Q 025055 124 KVLNGRTVNASIA 136 (258)
Q Consensus 124 ~~l~g~~l~V~~a 136 (258)
..|.|+.|.|...
T Consensus 245 ~~~~g~~l~v~r~ 257 (509)
T TIGR01642 245 IIYSNVFLKIRRP 257 (509)
T ss_pred eEeeCceeEecCc
Confidence 9999999999654
No 36
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.4e-15 Score=113.27 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=81.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...+..|||.++...+|+++|.+.|..||.|+.|+|..|+.||..+|||+|+|.+..+|++||..|||..|.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+--++.
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 875544
No 37
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=7.7e-15 Score=132.68 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecch--hHHHHHHHHhCCceeCCeEEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI--PDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~--~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
....+||||||++.+++++|..+|..||.|..|.|++ .|| ||||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457999999999999999999999999999999994 467 99999999987 68999999999999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99753
No 38
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.1e-16 Score=125.20 Aligned_cols=83 Identities=27% Similarity=0.555 Sum_probs=78.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...+.-|||||||+.+||.+|-.+|++||.|+.|.|++|+.||+++||||+.|++..+...|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 543
No 39
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-15 Score=124.69 Aligned_cols=83 Identities=31% Similarity=0.511 Sum_probs=79.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++||||+|...+++.-|...|-.||.|..|.++.|..++++||||||+|...++|..||..||+.+|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
+|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 875
No 40
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.8e-14 Score=134.73 Aligned_cols=83 Identities=34% Similarity=0.612 Sum_probs=78.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
+..++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 34689999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
...
T Consensus 264 ~~~ 266 (457)
T TIGR01622 264 QDS 266 (457)
T ss_pred cCC
Confidence 743
No 41
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=6.6e-14 Score=95.83 Aligned_cols=72 Identities=42% Similarity=0.647 Sum_probs=67.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
+|||+|||..++.++|+++|..||.|..+.+..++ +.++|+|||+|.+.+.|..|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7789999999999999999999999999999998873
No 42
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.7e-14 Score=118.16 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=71.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
+.+.+|||+||++.+|+++|+++|+.||.|.+|.|+.+. ...|||||+|.++++|..|+. |+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 346899999999999999999999999999999999874 456899999999999999996 9999999999999886
Q ss_pred cC
Q 025055 137 AD 138 (258)
Q Consensus 137 ~~ 138 (258)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 43
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=100.56 Aligned_cols=81 Identities=22% Similarity=0.450 Sum_probs=74.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
+..+..|||.|||+.+|.+++.++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|+..|+|..+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 4557899999999999999999999999999999997754 4689999999999999999999999999999999998
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
.++.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7654
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=8.6e-14 Score=119.06 Aligned_cols=80 Identities=40% Similarity=0.673 Sum_probs=77.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
..+|||+|||+.+|+++|.++|..||.|..|.++.++.++.++|||||+|.+.++|..|+..|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999764
No 45
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=8.4e-14 Score=117.59 Aligned_cols=81 Identities=31% Similarity=0.508 Sum_probs=75.5
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
..+.+++||||||+..+|+++|++.|+.||+|.+|+|..++ ||+||.|.+.+.|..||..||+..|.|+.+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 46788999999999999999999999999999999999874 799999999999999999999999999999999
Q ss_pred EccCCCC
Q 025055 135 IAADNGR 141 (258)
Q Consensus 135 ~a~~~~~ 141 (258)
|-+....
T Consensus 234 WGKe~~~ 240 (321)
T KOG0148|consen 234 WGKEGDD 240 (321)
T ss_pred ccccCCC
Confidence 9876544
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=3.3e-13 Score=128.09 Aligned_cols=77 Identities=30% Similarity=0.495 Sum_probs=70.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTF--GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...+|||+|||+.+++++|+++|+.| |.|..|.++. +||||+|.+.++|.+||+.||+..|.|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998763 5999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
|++....
T Consensus 304 Akp~~~~ 310 (578)
T TIGR01648 304 AKPVDKK 310 (578)
T ss_pred ccCCCcc
Confidence 9876543
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.2e-13 Score=110.89 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||||||.++.+.+|+++|.+||.|..|.|..- ....+||||+|+++.+|+.||..-+|..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 34589999999999999999999999999999988643 345679999999999999999999999999999999998
Q ss_pred cCCC
Q 025055 137 ADNG 140 (258)
Q Consensus 137 ~~~~ 140 (258)
..-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 6543
No 48
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.3e-13 Score=93.95 Aligned_cols=71 Identities=42% Similarity=0.676 Sum_probs=67.1
Q ss_pred EecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 64 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
|+|||..+++++|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988788999999999999999999999999999999998873
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=126.76 Aligned_cols=82 Identities=29% Similarity=0.520 Sum_probs=79.1
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
+.|||||||+.+++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 025055 140 GR 141 (258)
Q Consensus 140 ~~ 141 (258)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.1e-14 Score=125.69 Aligned_cols=76 Identities=28% Similarity=0.524 Sum_probs=74.2
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
|+||||.|.+.+.|+.|+..|..||+|++|.+..|+.|++++|||||+|+-++.|+.|++.|||..++||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999973
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=7.7e-13 Score=90.94 Aligned_cols=74 Identities=42% Similarity=0.704 Sum_probs=68.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
+|||+|||..+++++|.++|..||.|..+.+..++.+ .++|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987744 7789999999999999999999999999999999864
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=7.6e-14 Score=117.70 Aligned_cols=87 Identities=22% Similarity=0.410 Sum_probs=82.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
..+++|+|||-.||....+.+|-++|-.||.|.+.+|..|+.|+.+++|+||.|.++.+|+.||.+|||..|+-++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 025055 135 IAADNGR 141 (258)
Q Consensus 135 ~a~~~~~ 141 (258)
+-+++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9776644
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=6.6e-13 Score=111.70 Aligned_cols=83 Identities=27% Similarity=0.440 Sum_probs=78.6
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
..+..|||-||.++++|.-|.++|+.||.|..|+|++|..|.+++|||||++.+.++|.-||..|||..+.++.|.|.|-
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 554
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.1e-12 Score=111.74 Aligned_cols=85 Identities=27% Similarity=0.470 Sum_probs=81.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
..|+.+.|||-.|++.+|+++|.-+|+.||.|.+|.|++|..||-+..||||+|.+.+++++|.-.|++..|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
|++.-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 97654
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=6.1e-13 Score=118.72 Aligned_cols=83 Identities=27% Similarity=0.488 Sum_probs=75.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc-eeCC--eEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK-VLNG--RTVNA 133 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~-~l~g--~~l~V 133 (258)
...++||||-|+..+||.+++++|++||.|.+|+|++|. .+.+||||||.|.+.+.|..||+.|||. .+.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 456899999999999999999999999999999999998 5899999999999999999999999995 4554 67999
Q ss_pred EEccCCC
Q 025055 134 SIAADNG 140 (258)
Q Consensus 134 ~~a~~~~ 140 (258)
+||.+..
T Consensus 201 kFADtqk 207 (510)
T KOG0144|consen 201 KFADTQK 207 (510)
T ss_pred EecccCC
Confidence 9998654
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=3.6e-12 Score=88.70 Aligned_cols=61 Identities=31% Similarity=0.596 Sum_probs=55.8
Q ss_pred HHHHHHHhh----cCCCeEEEE-EeecCCC--CCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 73 NSDLHTLFS----TFGKIARVT-VLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 73 e~~L~~~F~----~~G~i~~v~-i~~d~~t--g~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
+++|+++|. .||.|.+|. |+.++.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 7777766 899999999999999999999999999999999986
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.3e-12 Score=113.79 Aligned_cols=78 Identities=32% Similarity=0.547 Sum_probs=72.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
.-..|||.||+.++|++.|+++|.+||.|..|..++| ||||.|.+.++|.+||+.|||+.|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3468999999999999999999999999999988866 99999999999999999999999999999999999
Q ss_pred CCCCCC
Q 025055 138 DNGRAS 143 (258)
Q Consensus 138 ~~~~~~ 143 (258)
+..+..
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 876543
No 58
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=7.6e-12 Score=83.05 Aligned_cols=56 Identities=38% Similarity=0.765 Sum_probs=50.9
Q ss_pred HHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 76 LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 76 L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
|.++|++||.|..|.+..+. +++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997643 589999999999999999999999999999999986
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.34 E-value=1.4e-12 Score=119.51 Aligned_cols=83 Identities=35% Similarity=0.592 Sum_probs=77.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
..||||||.++++++.|+.+|..||.|..|.+..|..||.++|||||+|.+.++|..|+..|||.+|-|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCC
Q 025055 140 GRA 142 (258)
Q Consensus 140 ~~~ 142 (258)
-..
T Consensus 359 ~~~ 361 (549)
T KOG0147|consen 359 VDT 361 (549)
T ss_pred ccc
Confidence 443
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.2e-12 Score=114.67 Aligned_cols=73 Identities=29% Similarity=0.418 Sum_probs=69.1
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
..|||| +++|+..|.++|+.+|+|.+|+|.+|. | +-|||||.|.++.+|.+||..||...|.|++|+|.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 358999 899999999999999999999999998 6 999999999999999999999999999999999999753
No 61
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=9e-12 Score=117.21 Aligned_cols=78 Identities=29% Similarity=0.552 Sum_probs=70.3
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC---CcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATR---KSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg---~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
++|||.||++.+|.++|..+|...|.|.+|.|...+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999887655321 25599999999999999999999999999999999998
Q ss_pred c
Q 025055 137 A 137 (258)
Q Consensus 137 ~ 137 (258)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=5e-11 Score=106.81 Aligned_cols=81 Identities=25% Similarity=0.428 Sum_probs=74.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFS-TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
..+.+||.|||+++...+|+++|. +.|.|..|.|+.|. +|+++|+|.|+|.+++.+++|++.||.+.+.|++|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999996 68899999999997 7999999999999999999999999999999999999875
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
.+.
T Consensus 122 ~d~ 124 (608)
T KOG4212|consen 122 HDE 124 (608)
T ss_pred Cch
Confidence 543
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.27 E-value=5.4e-12 Score=111.27 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=74.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
..++|||++|+|.++++.|+..|.+||.|..|.++.|+.+++++||+||+|.+.+...++|. ...+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56899999999999999999999999999999999999999999999999999988888876 35578999999998887
Q ss_pred CCC
Q 025055 138 DNG 140 (258)
Q Consensus 138 ~~~ 140 (258)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 653
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=1e-11 Score=99.53 Aligned_cols=86 Identities=23% Similarity=0.409 Sum_probs=78.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV-TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
...+.+|||+||.+.+++..|.+.|+.||.|... .|+++..||.++|||||.|.+.+.+.+|+..|||..+..++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 3445889999999999999999999999988764 889999999999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 025055 135 IAADNGR 141 (258)
Q Consensus 135 ~a~~~~~ 141 (258)
++..+..
T Consensus 173 ya~k~~~ 179 (203)
T KOG0131|consen 173 YAFKKDT 179 (203)
T ss_pred EEEecCC
Confidence 9986644
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.25 E-value=1.7e-11 Score=101.49 Aligned_cols=81 Identities=33% Similarity=0.571 Sum_probs=74.1
Q ss_pred CCCEEEEecCCCCCCHHHHHH----HhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHT----LFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
++.||||.||+..+..++|+. +|++||.|..|.... |.+.+|-|||.|.+.+.|-.|+.+|+|..+.|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999998776 999999999998875 6889999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
+||+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99987653
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.25 E-value=5.9e-11 Score=109.30 Aligned_cols=85 Identities=22% Similarity=0.403 Sum_probs=79.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...+++|||.+|...+...+|+.+|++||.|+-.+|+++..+--.++|+||++.+.++|.+||..||.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44568999999999999999999999999999999999977777899999999999999999999999999999999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
++..+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 98654
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.21 E-value=5e-11 Score=97.38 Aligned_cols=84 Identities=20% Similarity=0.390 Sum_probs=77.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcC-CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTF-GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
......+||..+|..+.+.+|..+|.+| |.|..+++.+++.||.++|||||+|++.+.|.-|.+.||++.|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4456789999999999999999999998 788888998999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87655
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=1.2e-10 Score=110.59 Aligned_cols=79 Identities=29% Similarity=0.503 Sum_probs=73.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
++|||||+|+.++++.+|..+|+.||.|.+|.++. ++|||||.+....+|.+|+..|....+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 68999999999999999999999999999998875 468999999999999999999999999999999999987
Q ss_pred CCCCC
Q 025055 139 NGRAS 143 (258)
Q Consensus 139 ~~~~~ 143 (258)
++-..
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 76544
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1e-10 Score=106.25 Aligned_cols=75 Identities=32% Similarity=0.542 Sum_probs=71.0
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 62 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
|||.||+..++..+|.++|+.||.|.+|+|..+.. | ++|| ||+|.+.+.|.+||..|||..+.|+.|.|.....+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 99999999999999999999999999999999873 4 9999 99999999999999999999999999999987654
No 70
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.12 E-value=1.6e-09 Score=99.12 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=69.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
...+|||.|||.+++..+|+++|..||.|+...|..-...++..+||||+|.+...++.||.+ +-..|++++|.|+--+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999888765432355559999999999999999986 5778899999999766
Q ss_pred CCCC
Q 025055 138 DNGR 141 (258)
Q Consensus 138 ~~~~ 141 (258)
....
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 5433
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=7.9e-11 Score=110.98 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=77.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...+.|+|.|||+.++-.+++.+|..||.|.+|+|+.-...+.++|||||+|-++.+|.+|+.+|..+-|.||.|.++||
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 33689999999999999999999999999999999987555678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 025055 137 ADNGR 141 (258)
Q Consensus 137 ~~~~~ 141 (258)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87654
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=5.3e-10 Score=93.34 Aligned_cols=72 Identities=28% Similarity=0.498 Sum_probs=66.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
..||||+||+.+.+.+|+.+|..||.|.+|.+.. ||+||+|.+..+|..||..||+.+|.|..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3699999999999999999999999999998864 69999999999999999999999999999999998754
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=8.1e-10 Score=97.17 Aligned_cols=79 Identities=19% Similarity=0.419 Sum_probs=75.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
-.+|||..+.++.+++||+.+|+.||+|..|.+.+++.++.++||+||+|.+......||..||-..|+|..|+|..+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4799999999999999999999999999999999999888899999999999999999999999999999999997654
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=1.8e-09 Score=95.45 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=77.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
...+|||++||.++++++|+++|.+||.|..+.++.|..+.+++||+||+|.+.+.+..++. ...+.|+|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35699999999999999999999999999999999999999999999999999999998876 68899999999999999
Q ss_pred CCCCC
Q 025055 138 DNGRA 142 (258)
Q Consensus 138 ~~~~~ 142 (258)
++...
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 87543
No 75
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.97 E-value=3.1e-09 Score=90.54 Aligned_cols=83 Identities=25% Similarity=0.468 Sum_probs=77.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
......+||+|+.+.+|.+++...|..||.|..|.|+.++.++.++||+||+|.+.+.+..++. |++..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 5566889999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
.+-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.96 E-value=3.2e-09 Score=90.44 Aligned_cols=84 Identities=35% Similarity=0.542 Sum_probs=77.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|+|.|||+.+++++|+++|..||.+..+-|.+++ .|.+.|.|-|.|...++|..|++.+|+..++|+.|.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445889999999999999999999999999999999998 699999999999999999999999999999999999988
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 76543
No 77
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=2.3e-09 Score=90.86 Aligned_cols=81 Identities=28% Similarity=0.539 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce-eCC--eEEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNG--RTVNAS 134 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~-l~g--~~l~V~ 134 (258)
..++||||-|...-.|+|++.+|..||.|.+|.+.+.. .|.++|+|||.|.+..+|+.||..|||.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999999999999987 58999999999999999999999999964 444 569999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
+|...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 98643
No 78
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.93 E-value=6e-09 Score=94.90 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=65.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
....|-+.+|||++|+++|.+||+.+ .|.++.+.+ .+|++.|-|||+|.+.++++.|++ .+...+..+-|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34567778999999999999999999 577765554 479999999999999999999998 57778888889997664
Q ss_pred C
Q 025055 138 D 138 (258)
Q Consensus 138 ~ 138 (258)
.
T Consensus 85 ~ 85 (510)
T KOG4211|consen 85 G 85 (510)
T ss_pred C
Confidence 4
No 79
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=6.6e-09 Score=90.95 Aligned_cols=76 Identities=25% Similarity=0.425 Sum_probs=67.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh-CCceeCCeEEEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI-HGKVLNGRTVNASI 135 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l-~g~~l~g~~l~V~~ 135 (258)
..-.+|||++|...+++.+|+++|.+||.|.+|.++.. +++|||+|.+...|+.|...+ +...|+|.+|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34579999999999999999999999999999999864 359999999999999987654 55668999999999
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 887
No 80
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.88 E-value=5.5e-09 Score=98.61 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecC---CCCCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 50 KGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDR---ATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 50 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~---~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
+......|..++|||+||++.++++.|...|+.||+|..|+|+.-+ ...+.+-+|||.|-+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 3334447788999999999999999999999999999999998654 2245677999999999999999999999999
Q ss_pred CCeEEEEEEccC
Q 025055 127 NGRTVNASIAAD 138 (258)
Q Consensus 127 ~g~~l~V~~a~~ 138 (258)
.+..|++-|++.
T Consensus 245 ~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 245 MEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeccccc
Confidence 999999999854
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.88 E-value=1.8e-08 Score=88.28 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=75.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--------RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
...++.|||.|||.++|.+++.++|+.||.|. .|+|..+. .|..+|=|++.|...+++..|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34467799999999999999999999999875 47787776 4999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 025055 128 GRTVNASIAADNGR 141 (258)
Q Consensus 128 g~~l~V~~a~~~~~ 141 (258)
|+.|+|+.|+-..+
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999975433
No 82
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.87 E-value=1e-09 Score=100.97 Aligned_cols=81 Identities=27% Similarity=0.472 Sum_probs=75.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++||+-.|+..++.-+|++||+.+|.|..|+++.|+.+++++|.|||+|.+.+.+..||. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3446799999999999999999999999999999999999999999999999999999999995 999999999999987
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 53
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.86 E-value=6.1e-09 Score=93.61 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=70.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
...+..++|||.|||+++|...|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+..|+|..|+|+.|.|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 3456679999999999999999999999999999998854 577877 89999999999999999999999999999
Q ss_pred EEc
Q 025055 134 SIA 136 (258)
Q Consensus 134 ~~a 136 (258)
.+.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 873
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.80 E-value=1.6e-07 Score=84.01 Aligned_cols=77 Identities=27% Similarity=0.443 Sum_probs=69.6
Q ss_pred CCEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 59 KSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 59 ~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
++.|.|.||... +|.+.|..+|+.||.|..|+|+.++. --|+|+|.+...|+-|+..|+|+.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999654 89999999999999999999998753 379999999999999999999999999999999987
Q ss_pred CCC
Q 025055 138 DNG 140 (258)
Q Consensus 138 ~~~ 140 (258)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 543
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.80 E-value=4.9e-08 Score=71.85 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=71.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhc--CCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC----CeEEEE
Q 025055 60 STVYVSNLDYALTNSDLHTLFST--FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN----GRTVNA 133 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~----g~~l~V 133 (258)
+||.|.|||...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888864 367788999999989999999999999999999999999998874 567888
Q ss_pred EEccCCC
Q 025055 134 SIAADNG 140 (258)
Q Consensus 134 ~~a~~~~ 140 (258)
.+|+-.+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8886543
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=6.2e-09 Score=85.96 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
++...||||+||...++++-|.++|-+.|+|..|.|..++. +..+ ||||.|.++....-|+..|||..+.+..|.|++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 45568999999999999999999999999999999998874 5566 999999999999999999999999999998887
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
-..
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 543
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.69 E-value=1e-08 Score=86.39 Aligned_cols=85 Identities=22% Similarity=0.424 Sum_probs=77.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
....+||.|-|...++++.|...|.+|-.....++++++.||+++||+||.|.++.++..|+..|+|..++.++|.+.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34579999999999999999999999998889999999999999999999999999999999999999999999988766
Q ss_pred cCCCC
Q 025055 137 ADNGR 141 (258)
Q Consensus 137 ~~~~~ 141 (258)
..+.+
T Consensus 268 ~wkeR 272 (290)
T KOG0226|consen 268 EWKER 272 (290)
T ss_pred hHHhh
Confidence 55543
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=7.4e-08 Score=89.11 Aligned_cols=72 Identities=26% Similarity=0.537 Sum_probs=65.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
.-+..+|+|-|||..+++++|..+|+.||.|..|+. |-..+|..||+|.++.+|++|+++|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345689999999999999999999999999999766 445679999999999999999999999999999888
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.52 E-value=6.6e-07 Score=79.02 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=78.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--------RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
.....+|||.+||..+++.+|.++|.++|.|. .|.|-+++.|+.++|-|.|+|.+...|+.||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999885 4678888999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 025055 128 GRTVNASIAADNGR 141 (258)
Q Consensus 128 g~~l~V~~a~~~~~ 141 (258)
+..|+|.+|..++.
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999987664
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=2.6e-07 Score=85.95 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=80.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....+.+||++||..+++..+.+++..||.+....++.+..+|.++||||.+|.++.....|+..|||..+.+..|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 55568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
|-....
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 875443
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.34 E-value=4.4e-07 Score=79.81 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=74.9
Q ss_pred CEEE-EecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 60 STVY-VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 60 ~~lf-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
.++| |++|++.+++++|+.+|..+|.|..++++.+..++.++|||||.|.+...+..++.. +...+.++++.|....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 4555 999999999999999999999999999999999999999999999999999999886 78899999999999877
Q ss_pred CCCC
Q 025055 139 NGRA 142 (258)
Q Consensus 139 ~~~~ 142 (258)
.+..
T Consensus 264 ~~~~ 267 (285)
T KOG4210|consen 264 RPKS 267 (285)
T ss_pred Cccc
Confidence 6554
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.34 E-value=2.9e-06 Score=60.07 Aligned_cols=68 Identities=29% Similarity=0.400 Sum_probs=48.7
Q ss_pred CEEEEecCCCCCCHHH----HHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 60 STVYVSNLDYALTNSD----LHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~----L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
..|||.|||.+.+... |++++..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 667777887 565541 2589999999999999999999999999999999
Q ss_pred Ecc
Q 025055 135 IAA 137 (258)
Q Consensus 135 ~a~ 137 (258)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.24 E-value=1.5e-06 Score=72.25 Aligned_cols=68 Identities=28% Similarity=0.423 Sum_probs=57.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
.....||||.||..++||++|+.+|+.|.....++|.. ......|||+|++.+.|..|+..|+|..|.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 45567999999999999999999999998776666642 223469999999999999999999998763
No 94
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.19 E-value=8.1e-06 Score=71.95 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=67.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
....+|||||-|++|+++|.+.+...| .|.+++++.++.+|.++|||+|...+....++.++.|--..|.|..-.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 346899999999999999999888777 67888999999999999999999999999999999999899988765543
No 95
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.11 E-value=1.4e-05 Score=66.63 Aligned_cols=79 Identities=23% Similarity=0.455 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC-CeEEE
Q 025055 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVN 132 (258)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~-g~~l~ 132 (258)
...+++..||+.|||..++.+.|..+|.+|.....|+++... .+.|||+|.+...|..|...+++..|. ...+.
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 347788999999999999999999999999999999998653 479999999999999999999998886 88888
Q ss_pred EEEcc
Q 025055 133 ASIAA 137 (258)
Q Consensus 133 V~~a~ 137 (258)
|.+|+
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 88874
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.95 E-value=2.2e-05 Score=72.01 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=63.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIAR-VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
....|-+.+||+.+|++||.+||+..-.|.. |.++.+. .+++.|-|||+|++.+.|+.||. -|...|.-+-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 4467889999999999999999997755544 5566665 57899999999999999999998 4777788888888654
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=2.2e-05 Score=58.90 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=44.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC-----ceeCCeEEEE
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG-----KVLNGRTVNA 133 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g-----~~l~g~~l~V 133 (258)
++.|+|.+++..++.++|+++|+.||.|..|.+...- --|||.|.+.+.|+.|+..+.- ..|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3678999999999999999999999999999886543 2899999999999999986643 3556666666
Q ss_pred EE
Q 025055 134 SI 135 (258)
Q Consensus 134 ~~ 135 (258)
.+
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 55
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.89 E-value=3e-05 Score=68.17 Aligned_cols=82 Identities=24% Similarity=0.490 Sum_probs=64.0
Q ss_pred CCCCCEEEEecCCCCCCHHH----H--HHHhhcCCCeEEEEEeecCCC-CCcccE--EEEEecchhHHHHHHHHhCCcee
Q 025055 56 APSKSTVYVSNLDYALTNSD----L--HTLFSTFGKIARVTVLKDRAT-RKSRGV--AFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~d~~t-g~~rG~--aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
.....-+||-+||+.+..++ | .++|++||.|..|.|...-.+ .-.-+. .||+|.+.++|.+||.+.+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 44457899999999887665 2 589999999998877543211 111222 39999999999999999999999
Q ss_pred CCeEEEEEEcc
Q 025055 127 NGRTVNASIAA 137 (258)
Q Consensus 127 ~g~~l~V~~a~ 137 (258)
+|+.|+..+..
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999998865
No 99
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.88 E-value=1.8e-06 Score=83.58 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=56.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l 121 (258)
..++||.||+..+.+.+|...|..+|.+..+.+.....+++.+|+|||.|..++.+.+||...
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 468999999999999999999999998888877755667899999999999999999999843
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.86 E-value=0.00024 Score=63.42 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 54 GLAPSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 54 ~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
....+++.++|-+|... ++-+.|..+|..||.|..|+++..+ .|-|.|++.+..+.++|+..||+..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34567899999999876 5678899999999999999999865 37899999999999999999999999999999
Q ss_pred EEEccCC
Q 025055 133 ASIAADN 139 (258)
Q Consensus 133 V~~a~~~ 139 (258)
|.+++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9998754
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=1.3e-05 Score=67.18 Aligned_cols=72 Identities=29% Similarity=0.461 Sum_probs=63.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....+.|+|.+|+..+...+|..+|..+|.+....+ .++++||+|...++|..||..|++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455688999999999999999999999999854433 346999999999999999999999999999999943
No 102
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=8.9e-05 Score=69.17 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=65.9
Q ss_pred CCCCEEEEecCCCCCCHH------HHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC-Ce
Q 025055 57 PSKSTVYVSNLDYALTNS------DLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GR 129 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~------~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~-g~ 129 (258)
.-...|+|.|+|---... -|..+|+++|+|..+.++.+..+| ++||.|++|.+..+|+.|++.|||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 345789999999754332 367899999999999999888655 9999999999999999999999999884 56
Q ss_pred EEEEEEcc
Q 025055 130 TVNASIAA 137 (258)
Q Consensus 130 ~l~V~~a~ 137 (258)
++.|..-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776544
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.74 E-value=2e-05 Score=66.80 Aligned_cols=73 Identities=18% Similarity=0.357 Sum_probs=62.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--------CCccc----EEEEEecchhHHHHHHHHhCCce
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT--------RKSRG----VAFIQFVQIPDALSAARAIHGKV 125 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t--------g~~rG----~aFV~f~~~~~a~~Ai~~l~g~~ 125 (258)
..-.||+++||+.+...-|+++|+.||.|-.|.|-....+ |.+.. -|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999999776544 23322 36799999999999999999999
Q ss_pred eCCeE
Q 025055 126 LNGRT 130 (258)
Q Consensus 126 l~g~~ 130 (258)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.61 E-value=0.00026 Score=66.22 Aligned_cols=134 Identities=21% Similarity=0.363 Sum_probs=92.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcC-----------C-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTF-----------G-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----------G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~ 122 (258)
..-....+||+++|+.++++.+..+|..- | .|..+.+... +.||||+|.+.++|..|+. ++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~-~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMA-LD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhc-cc
Confidence 34556899999999999999999988643 2 3566666443 4599999999999999987 78
Q ss_pred CceeCCeEEEEEEccCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCC
Q 025055 123 GKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPMPKKLRRRSDGEDESEFDDGG 202 (258)
Q Consensus 123 g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 202 (258)
+..+.|.++++..-........ -...... ...-...
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p~----------------------------~~~~~~~----------------~~~~~~~ 279 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVPG----------------------------ITLSPSQ----------------LGKVGLL 279 (500)
T ss_pred chhhCCCCceecccccccCCcc----------------------------chhhhcc----------------ccccCCc
Confidence 9999999888764322211100 0000000 0011133
Q ss_pred CcccccChHHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCcccc
Q 025055 203 WASVVDGGAEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 203 ~~~~~d~~~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
|++...-..+.++++ .||+.+.+++| ++|+| ..||.+
T Consensus 280 ~~~t~~~~~~~ki~v--------------~~lp~~l~~~q--~~Ell-~~fg~l 316 (500)
T KOG0120|consen 280 PASTDVPDSPNKIFV--------------GGLPLYLTEDQ--VKELL-DSFGPL 316 (500)
T ss_pred ccccCcccccchhhh--------------ccCcCccCHHH--HHHHH-Hhcccc
Confidence 444333345677888 99999999999 99999 888865
No 105
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.57 E-value=0.00033 Score=65.80 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=64.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee---CCeE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFST-FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL---NGRT 130 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l---~g~~ 130 (258)
....++.|||.||-.-.|.-.|+.++.. +|.|... .+| +-+..|||.|.+.++|.+.+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4667899999999999999999999994 5566665 223 2456899999999999999999999876 6788
Q ss_pred EEEEEccC
Q 025055 131 VNASIAAD 138 (258)
Q Consensus 131 l~V~~a~~ 138 (258)
|.|.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99998753
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.55 E-value=0.00035 Score=61.73 Aligned_cols=81 Identities=26% Similarity=0.426 Sum_probs=64.1
Q ss_pred CCCCCEEEEecCC----CCCC-------HHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc
Q 025055 56 APSKSTVYVSNLD----YALT-------NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124 (258)
Q Consensus 56 ~~~~~~lfV~nLp----~~~t-------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~ 124 (258)
....++|.|.||= +..+ .++|.+-..+||+|..|.|.- ..+.|.+-|.|.+.++|..||+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 4456889998872 1233 234566678999999997752 457899999999999999999999999
Q ss_pred eeCCeEEEEEEccCCC
Q 025055 125 VLNGRTVNASIAADNG 140 (258)
Q Consensus 125 ~l~g~~l~V~~a~~~~ 140 (258)
.|.|+.|...+...+.
T Consensus 338 ~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 338 WFDGRQLTASIWDGKT 353 (382)
T ss_pred eecceEEEEEEeCCcc
Confidence 9999999998865543
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.55 E-value=0.00029 Score=63.55 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=67.2
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCe-EEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR-TVNA 133 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~-~l~V 133 (258)
..++..+|.+.|+|..+++++|+.+|..-|-........ ++.+-+|++.+.+.++|..|+-.+|.+.+.+. .|+|
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 467788999999999999999999999988665554433 33456999999999999999999999998655 8999
Q ss_pred EEccC
Q 025055 134 SIAAD 138 (258)
Q Consensus 134 ~~a~~ 138 (258)
.|++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 99864
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0005 Score=63.68 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=59.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHH
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFS-TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~ 120 (258)
-.+.+|||||+||.-++.++|..+|. -||.|..+-|=.|+.-..++|-|=|+|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 55678999999999999999999999 799999999999977789999999999999999999874
No 109
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.45 E-value=0.00036 Score=45.57 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=41.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHH
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai 118 (258)
+.|-|.+.+....+. +..+|..||.|.++.+... .-+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 467888998776655 5558889999999988622 239999999999999885
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.42 E-value=0.00021 Score=63.90 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=66.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCC-eEE--EEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGK-IAR--VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~--v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...|-+.+||+.++.++|-.||..|-. |.. |+++.+- .|++.|-|||+|.+.+.|..|....|.+....+.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567889999999999999999998863 433 7888775 589999999999999999999998888878888888876
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 53
No 111
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.37 E-value=0.00061 Score=65.20 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=65.7
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeE-EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIA-RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
+.|-+.|+|++++-+||.+||..|-.+- +|.+.++- .|...|-|-|.|++.++|.+|...|++..|..+.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd-~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND-DGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC-CCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788899999999999999999996554 56665553 689999999999999999999999999999999998865
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.36 E-value=0.00022 Score=64.51 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=56.9
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc-eeCCeEEEEEEccC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK-VLNGRTVNASIAAD 138 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~-~l~g~~l~V~~a~~ 138 (258)
..+|++||.+.++..+|+.+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|. .+.|.++.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997541111111111 2379999999999999999999995 58999999887654
Q ss_pred C
Q 025055 139 N 139 (258)
Q Consensus 139 ~ 139 (258)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 3
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.32 E-value=6.4e-05 Score=73.47 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=63.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...+.+||+|||+..+++.+|+..|..+|.|..|.|-.-+ -+.---||||.|.+...+..|+..+.+..|..-.+.+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3446899999999999999999999999999999886643 234456999999999999999988888776544444433
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00095 Score=61.92 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=50.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CC-CCccc---EEEEEecchhHHHHHHHHhC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDR--AT-RKSRG---VAFIQFVQIPDALSAARAIH 122 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~t-g~~rG---~aFV~f~~~~~a~~Ai~~l~ 122 (258)
..-.++||||+||++++|+.|...|..||.+. |.++... .. -.++| |+|+.|+++..+...|.++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 34468999999999999999999999999865 4444211 11 12566 99999999988887776653
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.30 E-value=0.0019 Score=50.84 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=53.4
Q ss_pred CCCCCEEEEecCCC------CCCH---HHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 56 APSKSTVYVSNLDY------ALTN---SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 56 ~~~~~~lfV~nLp~------~~te---~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
.|+..||.|.=+.+ ...+ .+|-+.|..||.+.-|+++.+ .-+|+|.+-..|.+|+. |+|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 56667888875551 1222 257788999999988888753 57899999999999998 899999
Q ss_pred CCeEEEEEEccCCCC
Q 025055 127 NGRTVNASIAADNGR 141 (258)
Q Consensus 127 ~g~~l~V~~a~~~~~ 141 (258)
+|+.|.|.+-.+.+-
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999999776543
No 116
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.0063 Score=49.64 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=61.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee--CCeEEEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL--NGRTVNASI 135 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l--~g~~l~V~~ 135 (258)
....|.|.+||...+.++|++++...|.|-...+..| |++.|+|...++++-||..|+...+ .|....|.+
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 4578999999999999999999999999988888776 4899999999999999999988766 455555544
Q ss_pred c
Q 025055 136 A 136 (258)
Q Consensus 136 a 136 (258)
-
T Consensus 187 ~ 187 (241)
T KOG0105|consen 187 R 187 (241)
T ss_pred c
Confidence 3
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.23 E-value=0.012 Score=52.81 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=64.1
Q ss_pred CCCCCEEEEecC--CCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee--CCeEE
Q 025055 56 APSKSTVYVSNL--DYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL--NGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nL--p~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l--~g~~l 131 (258)
..++..|.+.=| -+-+|.+-|..+....|+|..|.|+.. +| --|.|+|++.+.|++|...|||..| +-.+|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 445566666544 456899999999999999999988764 33 3799999999999999999999887 33689
Q ss_pred EEEEccCC
Q 025055 132 NASIAADN 139 (258)
Q Consensus 132 ~V~~a~~~ 139 (258)
+|++|++.
T Consensus 192 KIeyAkP~ 199 (494)
T KOG1456|consen 192 KIEYAKPT 199 (494)
T ss_pred EEEecCcc
Confidence 99999875
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.20 E-value=0.00048 Score=67.54 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=69.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC--eEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVN 132 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g--~~l~ 132 (258)
.....+.+||++|..++....|...|..||.|..|.+-. ..-||||.|.+...++.|+..|-|..|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 355678999999999999999999999999999887643 23499999999999999999999999976 6799
Q ss_pred EEEccCCCC
Q 025055 133 ASIAADNGR 141 (258)
Q Consensus 133 V~~a~~~~~ 141 (258)
|.+|.+-..
T Consensus 525 vdla~~~~~ 533 (975)
T KOG0112|consen 525 VDLASPPGA 533 (975)
T ss_pred cccccCCCC
Confidence 999876543
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=0.00046 Score=67.33 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
...|||.|+|+..|.++|+.++..+|.+++++++..+ .|+++|.|||.|.+..++..++..++...+.-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3589999999999999999999999999999988877 599999999999999999999988888888777788887665
No 120
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.08 E-value=0.004 Score=46.13 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=50.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEE-EeecC------CCCCcccEEEEEecchhHHHHHHHHhCCceeCCeE-
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVT-VLKDR------ATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT- 130 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-i~~d~------~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~- 130 (258)
.+-|.|-+.|... ...|-..|++||.|.+.. +..+. ........-.|+|.++.+|.+||. .||..|.|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4568888999884 456777899999998774 10000 001123489999999999999998 6999998864
Q ss_pred EEEEEcc
Q 025055 131 VNASIAA 137 (258)
Q Consensus 131 l~V~~a~ 137 (258)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566653
No 121
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.96 E-value=0.00079 Score=61.11 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=56.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeec---CCC--CCc--------ccEEEEEecchhHHHHHHHHhC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD---RAT--RKS--------RGVAFIQFVQIPDALSAARAIH 122 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d---~~t--g~~--------rG~aFV~f~~~~~a~~Ai~~l~ 122 (258)
.-+.++|.+-|||.+-.-+-|.++|+.+|.|..|+|+.- +.+ +.+ +-+|||+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 457899999999999988999999999999999999765 222 222 4579999999999999999775
Q ss_pred C
Q 025055 123 G 123 (258)
Q Consensus 123 g 123 (258)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 122
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.78 E-value=0.0043 Score=55.89 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=62.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC---CCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT---RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
.|.|.||.+.+|.++++.||...|.|..+.|+.+... ....-.|||-|.+...+..|-. |.+++|-++.|.|-.+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7999999999999999999999999999988764322 2245589999999988887755 77788888887776654
Q ss_pred C
Q 025055 138 D 138 (258)
Q Consensus 138 ~ 138 (258)
.
T Consensus 88 ~ 88 (479)
T KOG4676|consen 88 D 88 (479)
T ss_pred C
Confidence 3
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.70 E-value=0.0057 Score=53.19 Aligned_cols=64 Identities=19% Similarity=0.395 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCc-ccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 74 SDLHTLFSTFGKIARVTVLKDRATRKS-RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 74 ~~L~~~F~~~G~i~~v~i~~d~~tg~~-rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
+++.+...+||.|..|.|...+.--.. ----||+|...++|.+|+-.|||..|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 356677889999999988877532222 2347999999999999999999999999999888753
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.62 E-value=0.00091 Score=56.97 Aligned_cols=61 Identities=21% Similarity=0.408 Sum_probs=50.6
Q ss_pred HHHHhh-cCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 76 LHTLFS-TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 76 L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
|...|. +||.|..+.|..+. .-...|-+||.|...++|++|+..||+..|.|++|...+.-
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 444445 89999998776553 34568899999999999999999999999999999998853
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.50 E-value=0.0023 Score=61.43 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR-VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
.+-..+..|||-.||..+++.++-++|...-.|++ |.|.+-+ +++-++.|||.|..++++..|+..-+.+.++.+.|+
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34556789999999999999999999998777776 7776665 788899999999999888888876666777888899
Q ss_pred EEEcc
Q 025055 133 ASIAA 137 (258)
Q Consensus 133 V~~a~ 137 (258)
|.-..
T Consensus 508 v~si~ 512 (944)
T KOG4307|consen 508 VDSIA 512 (944)
T ss_pred eechh
Confidence 97643
No 126
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.40 E-value=0.02 Score=40.76 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=42.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~ 122 (258)
.+..||+ +|..+...||.++|+.||.|. |.++.|. -|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3556666 999999999999999999975 6666653 79999999999999998775
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.29 E-value=0.0035 Score=56.30 Aligned_cols=72 Identities=24% Similarity=0.298 Sum_probs=54.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcC----CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTF----GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
-.|-+.+||+++++.++.+||..- |....|.++..+ .|+..|-|||.|..+++|+.||.. |...|+-|.|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 345567999999999999999632 244556666554 689999999999999999999974 555555555544
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.19 E-value=0.0016 Score=57.53 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=64.6
Q ss_pred CCCCCEEEEecCCCCCCHHH-H--HHHhhcCCCeEEEEEeecCC--CC-CcccEEEEEecchhHHHHHHHHhCCceeCCe
Q 025055 56 APSKSTVYVSNLDYALTNSD-L--HTLFSTFGKIARVTVLKDRA--TR-KSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~-L--~~~F~~~G~i~~v~i~~d~~--tg-~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~ 129 (258)
.....-+||-+|+..+..+. | .+.|.+||.|..|.+..+.. .+ ..-.-+||+|...++|..||...+|..+.|+
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 34457789999998875544 4 37899999999998887652 11 1223489999999999999999999999999
Q ss_pred EEEEEEccCC
Q 025055 130 TVNASIAADN 139 (258)
Q Consensus 130 ~l~V~~a~~~ 139 (258)
.|+..+...+
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 9877776543
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.03 E-value=0.021 Score=46.75 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=50.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhc-CCCe---EEEEEeecCCC--CCcccEEEEEecchhHHHHHHHHhCCceeCC---
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFST-FGKI---ARVTVLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGKVLNG--- 128 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~d~~t--g~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g--- 128 (258)
...+|.|.+||+.+|++++.+.+.. ++.. ..+.-...... .....-|||.|.+.+++...+..++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4578999999999999998886666 5554 23331122111 1234579999999999999999999988732
Q ss_pred --eEEEEEEcc
Q 025055 129 --RTVNASIAA 137 (258)
Q Consensus 129 --~~l~V~~a~ 137 (258)
....|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 245666663
No 130
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.87 E-value=0.013 Score=56.18 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCe
Q 025055 50 KGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129 (258)
Q Consensus 50 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~ 129 (258)
.....+.++..+|||+|+...+..+-+..+...+|.|.++..+. |||..|..+.....|+..++-..++|.
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 34445577789999999999999999999999999988876543 999999999999999999988888888
Q ss_pred EEEEEE
Q 025055 130 TVNASI 135 (258)
Q Consensus 130 ~l~V~~ 135 (258)
.|.+..
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 877665
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.78 E-value=0.013 Score=50.10 Aligned_cols=76 Identities=29% Similarity=0.394 Sum_probs=62.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc----eeCCeEEEEEE
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK----VLNGRTVNASI 135 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~----~l~g~~l~V~~ 135 (258)
..|||.||+..+..+.|...|+.||+|....++.|- .+++.+-++|.|...-.|..|+..+... ...+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 789999999999999999999999999987666664 5888899999999999999998876332 33556665554
Q ss_pred c
Q 025055 136 A 136 (258)
Q Consensus 136 a 136 (258)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 132
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.70 E-value=0.066 Score=36.01 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=44.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcC---CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTF---GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l 121 (258)
...|+|.|+. +++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3679999995 57888999999988 235678888875 5789999999999999764
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.62 E-value=0.18 Score=38.03 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=50.7
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g 128 (258)
..+.+...|+.++.++|..+.+.+- .|..++|+++. ..++-.+++.|.+...|......+||..|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555666667777776655554 57789999873 3467789999999999999999999998754
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.30 E-value=0.12 Score=35.93 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=41.2
Q ss_pred EEEEe-cCCCCCCHHHHHHHhhcCCC-----eEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 61 TVYVS-NLDYALTNSDLHTLFSTFGK-----IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 61 ~lfV~-nLp~~~te~~L~~~F~~~G~-----i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
++||. +--..++..+|-.++...+. |-.|.|..+ |+||+-.. +.|..++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45663 34556888899988887653 557777643 99998875 48899999999999999999998
Q ss_pred Ec
Q 025055 135 IA 136 (258)
Q Consensus 135 ~a 136 (258)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.05 E-value=0.037 Score=48.88 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=80.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
..+++||+++.+.+.+.++..+|..+|.+..+.+........++|+++|.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46899999999999999999999999988888777766678899999999999999999998544457777777666655
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025055 138 DNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176 (258)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 176 (258)
........ ..........+...+.+++.+..++..+.
T Consensus 167 ~~~~~~~n--~~~~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 167 RRGLRPKN--KLSRLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred cccccccc--hhcccccCccccceeecccccccchHHHh
Confidence 44421110 01111111222223366666666665543
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.05 E-value=0.15 Score=40.10 Aligned_cols=73 Identities=29% Similarity=0.341 Sum_probs=55.8
Q ss_pred CCCCCEEEEecCCCCCCH-HH---HHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTN-SD---LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te-~~---L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
.++-.||.|.=|..++.. +| +...++.||+|.+|.+. | +--|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 566678989877777643 34 44557899999999774 2 34799999999999999998875 5667778
Q ss_pred EEEEc
Q 025055 132 NASIA 136 (258)
Q Consensus 132 ~V~~a 136 (258)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 77764
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.79 E-value=0.023 Score=52.44 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=62.7
Q ss_pred CCCCCEEEEecCCCCC-CHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYAL-TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
....+.|-+--.|+.+ +-.+|...|.+||.|..|.|-+.. -.|.|+|.+..+|-.|.. .++..|+++.|+|-
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLF 441 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEE
Confidence 3445666666677776 567899999999999999886543 379999999999977766 79999999999999
Q ss_pred EccCCC
Q 025055 135 IAADNG 140 (258)
Q Consensus 135 ~a~~~~ 140 (258)
|-++.+
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987643
No 138
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.76 E-value=0.011 Score=43.79 Aligned_cols=23 Identities=48% Similarity=0.744 Sum_probs=21.8
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
|||+|.+|.++ |=+|| |.||++.
T Consensus 24 rNLp~~ITsee--mydlF-Gkyg~Ir 46 (124)
T KOG0114|consen 24 RNLPFKITSEE--MYDLF-GKYGTIR 46 (124)
T ss_pred ecCCccccHHH--HHHHh-hcccceE
Confidence 99999999999 99999 9999973
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.57 E-value=0.055 Score=50.92 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhc----------------------------CCCeEEEEEeecCCCCCcccEEEEEec
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFST----------------------------FGKIARVTVLKDRATRKSRGVAFIQFV 109 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~----------------------------~G~i~~v~i~~d~~tg~~rG~aFV~f~ 109 (258)
..+++.|.|||..-+..+|..+... .|.-..++++.|-.+..+.|||||.|.
T Consensus 360 ~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~ 439 (549)
T KOG4660|consen 360 RRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMT 439 (549)
T ss_pred chhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeec
Confidence 3467777777776666666555531 344456778888777789999999999
Q ss_pred chhHHHHHHHHhCCcee---C-CeEEEEEEccCCCC
Q 025055 110 QIPDALSAARAIHGKVL---N-GRTVNASIAADNGR 141 (258)
Q Consensus 110 ~~~~a~~Ai~~l~g~~l---~-g~~l~V~~a~~~~~ 141 (258)
+++++..+.+++||+.+ + .+.+.|.||+-.++
T Consensus 440 sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 440 SPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred CHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 99999999999999764 3 35577788765544
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.37 E-value=0.064 Score=52.90 Aligned_cols=75 Identities=29% Similarity=0.403 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee--CCeEEEEEEc
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL--NGRTVNASIA 136 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l--~g~~l~V~~a 136 (258)
..+.++-|.+-..+-..|..+|+.||.|.+++.+++-. .|.|+|.+.+.|..|+.+|+|..+ .|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34566667777788888999999999999998887653 899999999999999999999875 6888999998
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
+.-
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 754
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.23 E-value=0.19 Score=41.41 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC--CceeCCeEEEEEEccCC
Q 025055 72 TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH--GKVLNGRTVNASIAADN 139 (258)
Q Consensus 72 te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~--g~~l~g~~l~V~~a~~~ 139 (258)
....|+.+|..|+.+..+.++.. -+-..|.|.+.+.|..|...|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999999888877643 3478999999999999999999 99999999999998543
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.96 E-value=0.1 Score=49.23 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=55.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhc--CCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC--ceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFST--FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g--~~l~g~~l 131 (258)
....|.|+|.-||..+..++++.+|.. |-++.+|.+..+. --||+|++..+|+.|.+.|.. ..|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 445678889999999999999999974 7788899887653 479999999999999876643 34556554
Q ss_pred E
Q 025055 132 N 132 (258)
Q Consensus 132 ~ 132 (258)
.
T Consensus 245 m 245 (684)
T KOG2591|consen 245 M 245 (684)
T ss_pred h
Confidence 3
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.92 E-value=0.67 Score=42.88 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g 128 (258)
.+++.|+|-.+|..++-.||-.|...|- .|.+|+|++|. --++=..+|.|.+..+|......+||..|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3378999999999999999999887654 68899999964 2344468999999999999999999998754
No 144
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=91.62 E-value=0.058 Score=36.04 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=21.0
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||+..|++.+ |+++| ..||.+.
T Consensus 4 ~nlp~~~t~~~--l~~~f-~~~g~i~ 26 (70)
T PF00076_consen 4 GNLPPDVTEEE--LRDFF-SQFGKIE 26 (70)
T ss_dssp ESETTTSSHHH--HHHHH-HTTSTEE
T ss_pred cCCCCcCCHHH--HHHHH-HHhhhcc
Confidence 89999999999 99999 7799873
No 145
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.99 E-value=0.96 Score=39.82 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=50.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeE-EEEEEccC
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT-VNASIAAD 138 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~-l~V~~a~~ 138 (258)
=|-|-++|+.-. .-|..+|.+||.|+...... .--+-+|.|.+.-+|++||. .||.+|+|.. |-|....+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 344557776544 44677899999988754432 22389999999999999998 6999998865 55555433
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.87 E-value=2 Score=41.11 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=60.7
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhcC----CCeEEEEEeecC----------CCCC---------------------
Q 025055 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTF----GKIARVTVLKDR----------ATRK--------------------- 99 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~d~----------~tg~--------------------- 99 (258)
....++|-|-||.|. +...+|..+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455789999999998 6788999999876 578888765321 0111
Q ss_pred ----------------cccEEEEEecchhHHHHHHHHhCCceeC--CeEEEEEEc
Q 025055 100 ----------------SRGVAFIQFVQIPDALSAARAIHGKVLN--GRTVNASIA 136 (258)
Q Consensus 100 ----------------~rG~aFV~f~~~~~a~~Ai~~l~g~~l~--g~~l~V~~a 136 (258)
..=||.|+|.++..|......++|..|. +..|.+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1137999999999999999999999985 455555553
No 147
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.28 E-value=13 Score=36.54 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=52.8
Q ss_pred CEEEEe-cCCCCCCHHHHHHHhhcCCCeE-----EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 60 STVYVS-NLDYALTNSDLHTLFSTFGKIA-----RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 60 ~~lfV~-nLp~~~te~~L~~~F~~~G~i~-----~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
.++||. +--..++..+|-.++..-+.|. .|.|.. .|.||+... ..|...+..|++..+.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 456664 4456688888888887665443 555653 289999875 4688889999999999999999
Q ss_pred EEccCC
Q 025055 134 SIAADN 139 (258)
Q Consensus 134 ~~a~~~ 139 (258)
+.+...
T Consensus 558 ~~~~~~ 563 (629)
T PRK11634 558 QLLGDA 563 (629)
T ss_pred EECCCC
Confidence 998533
No 148
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=86.04 E-value=0.24 Score=39.19 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++..+|++ |+++| ..||.|.
T Consensus 40 gnL~~~~te~~--L~~~F-~~~G~I~ 62 (144)
T PLN03134 40 GGLSWGTDDAS--LRDAF-AHFGDVV 62 (144)
T ss_pred eCCCCCCCHHH--HHHHH-hcCCCeE
Confidence 99999999999 99999 8899863
No 149
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.91 E-value=5.7 Score=27.00 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 70 ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 70 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
.++-++|+..+..|+- .. |..++ | | =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999853 33 33443 2 2 479999999999999999999998887765
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.60 E-value=4.7 Score=35.39 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCcccEEEEEecch
Q 025055 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVLKDRATRKSRGVAFIQFVQI 111 (258)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~tg~~rG~aFV~f~~~ 111 (258)
...+..+-|||+|||.++...+|+..+...+- ..++.+ .-++|-||+.|-+.
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 33455677999999999999999998887663 234433 23567899999874
No 151
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=80.46 E-value=1.4 Score=21.85 Aligned_cols=17 Identities=41% Similarity=1.560 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCC
Q 025055 156 RCYECGDEGHLSYECPR 172 (258)
Q Consensus 156 ~~~~~g~~g~~~~~~~~ 172 (258)
.||.|+..||+..+||.
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 48999999999999873
No 152
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=79.90 E-value=0.84 Score=30.57 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=17.9
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+++++ |+++| ..||.+
T Consensus 4 ~nlp~~~~~~~--l~~~f-~~~g~v 25 (70)
T PF14259_consen 4 SNLPPSTTEED--LRNFF-SRFGPV 25 (70)
T ss_dssp ESSTTT--HHH--HHHHC-TTSSBE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCc
Confidence 89999999999 99999 778864
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=78.45 E-value=0.32 Score=44.20 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=57.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
..+|+|++|+..+...++-+.|..+|.|...++.. +-..-+|-|.|........|+. ++|..+.-+...+.+.++
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 47899999999999999999999999998777753 3334477799998888888887 677776644444433333
No 154
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.66 E-value=5.9 Score=36.36 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCcccEEEEEecchhHHHHHHHH
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~ 120 (258)
-.+.|=|.++|.....+||-..|+.|+. --.|.++-|. .||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3578999999999988999999999974 4467777664 899999999999999873
No 155
>smart00362 RRM_2 RNA recognition motif.
Probab=75.19 E-value=0.91 Score=29.51 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.1
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||+..+++++ |+++| ..||.+
T Consensus 5 ~~l~~~~~~~~--l~~~~-~~~g~v 26 (72)
T smart00362 5 GNLPPDVTEED--LKELF-SKFGPI 26 (72)
T ss_pred cCCCCcCCHHH--HHHHH-HhcCCE
Confidence 89999999999 99999 899975
No 156
>smart00360 RRM RNA recognition motif.
Probab=73.93 E-value=1.7 Score=28.00 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.9
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
.||+..+++++ |+++| ..||.+
T Consensus 2 ~~l~~~~~~~~--l~~~f-~~~g~v 23 (71)
T smart00360 2 GNLPPDVTEEE--LRELF-SKFGKI 23 (71)
T ss_pred CCCCcccCHHH--HHHHH-HhhCCE
Confidence 68999999999 99999 899975
No 157
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.87 E-value=0.99 Score=41.72 Aligned_cols=78 Identities=3% Similarity=-0.136 Sum_probs=61.9
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
...|+..||..+++.++.-+|..||.|..+.+...-..+...-.+||+-.. .++..+|..+.-..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456778899999999999999999999988776655456677788888765 467777777766778888888888754
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=70.27 E-value=5.1 Score=33.34 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=46.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHH
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~ 119 (258)
......+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+...+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 5567899999999999999999999999999877776654433444455554444444444443
No 159
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.70 E-value=5.5 Score=30.26 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=30.8
Q ss_pred EEEEecCCCC---------CCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecc-hhHHHHHHH
Q 025055 61 TVYVSNLDYA---------LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ-IPDALSAAR 119 (258)
Q Consensus 61 ~lfV~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~-~~~a~~Ai~ 119 (258)
++.|-|++.. ++.+.|.+.|..|.++. ++.+.++ .-+.|+++|.|.. -.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 5667777554 35578999999998875 6666664 3578999999985 333444443
No 160
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=69.39 E-value=0.94 Score=38.19 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=57.2
Q ss_pred CCCEEEEec----CCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 58 SKSTVYVSN----LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 58 ~~~~lfV~n----Lp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
...+++.|+ |...++++.+...|+.-|++..+++..+.. |+++-++|+++......-.++....+..+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 346778888 888899999999999999999999998874 88999999999988888888877666543
No 161
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=68.55 E-value=12 Score=25.71 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=44.3
Q ss_pred HHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 74 SDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 74 ~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
.+|.+-|...| ++..|+-+..+.++.+.-.-||+.....+... .|+=..|+|+.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 45778888888 78889888888777777788888876544333 244467789888887643
No 162
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=67.19 E-value=13 Score=25.43 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 74 SDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 74 ~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
++|.+-|...| .|..|.-+..+.+..+.-.-||++....+...+ ++=..|++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 45777777777 788888777776677777888888866553333 444678888888886543
No 163
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=65.24 E-value=1.9 Score=28.01 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.6
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+++++ |+++| ..||.+
T Consensus 5 ~~l~~~~~~~~--i~~~~-~~~g~i 26 (74)
T cd00590 5 GNLPPDVTEED--LRELF-SKFGKV 26 (74)
T ss_pred eCCCCccCHHH--HHHHH-HhcCCE
Confidence 89999999999 99999 778865
No 164
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=60.19 E-value=0.41 Score=43.96 Aligned_cols=74 Identities=15% Similarity=0.283 Sum_probs=61.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-ecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVL-KDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~-~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
.+.+-|.|+|+....+-|..++..||.+..|..+ ++..| -.--|+|.+.+.+..||..|+|..|....+.|.|-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4678999999999999999999999999988653 33332 23347889999999999999999999999999874
No 165
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.14 E-value=1.6 Score=41.43 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=55.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCe
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~ 129 (258)
...++|||.|++++++-.+|..+...+-.+..+.+-..-.-....-++.|+|.---....|+.+||+..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4458899999999999999999999887777666543322233456788999977778888888888765443
No 166
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=56.82 E-value=32 Score=30.46 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-------CCCcccEEEEEecchhHHHHHHH----HhCC-
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA-------TRKSRGVAFIQFVQIPDALSAAR----AIHG- 123 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-------tg~~rG~aFV~f~~~~~a~~Ai~----~l~g- 123 (258)
+=..+.|...||...++-..+-..|.+||+|.+|+++.+.. .........+.|-+.+.+..... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34456788899999999888888999999999999997641 12234567888988877665432 2222
Q ss_pred -ceeCCeEEEEEEcc
Q 025055 124 -KVLNGRTVNASIAA 137 (258)
Q Consensus 124 -~~l~g~~l~V~~a~ 137 (258)
..+....|.|.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 23566677777654
No 167
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=52.49 E-value=9.8 Score=23.41 Aligned_cols=19 Identities=53% Similarity=1.433 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPR 172 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~ 172 (258)
...|..|+..||+.|.|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 3568999999999999995
No 168
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=48.38 E-value=4.9 Score=35.94 Aligned_cols=29 Identities=14% Similarity=0.449 Sum_probs=27.0
Q ss_pred HHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 212 EERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 212 ~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
..||.. -|++|.+.|.+ |++.| ++||.||
T Consensus 96 pkRLhV--------------SNIPFrFRdpD--L~aMF-~kfG~Vl 124 (376)
T KOG0125|consen 96 PKRLHV--------------SNIPFRFRDPD--LRAMF-EKFGKVL 124 (376)
T ss_pred CceeEe--------------ecCCccccCcc--HHHHH-HhhCcee
Confidence 578999 99999999999 99999 9999886
No 169
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=48.38 E-value=26 Score=32.06 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCC--CCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~t--g~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
-..|.|.+||...++.+|.+-...|-. +....+.....+ ..-.+.|||.|...++.......++|++|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 367889999999999988877666532 111122211101 12357899999999998888888888876
No 170
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=47.43 E-value=19 Score=31.53 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=41.9
Q ss_pred CCEEEEecCCCC------------CCHHHHHHHhhcCCCeEEEEEee-cC----CCCCc-----ccEE---------EEE
Q 025055 59 KSTVYVSNLDYA------------LTNSDLHTLFSTFGKIARVTVLK-DR----ATRKS-----RGVA---------FIQ 107 (258)
Q Consensus 59 ~~~lfV~nLp~~------------~te~~L~~~F~~~G~i~~v~i~~-d~----~tg~~-----rG~a---------FV~ 107 (258)
..|||+.+||-. .+++-|...|..||.|..|.|+. |+ -+|+. .||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357788777753 35677999999999999888753 22 23443 3443 344
Q ss_pred ecchhHHHHHHHHhCCce
Q 025055 108 FVQIPDALSAARAIHGKV 125 (258)
Q Consensus 108 f~~~~~a~~Ai~~l~g~~ 125 (258)
|........|+..|.|..
T Consensus 229 fmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHhHHHHHHHHhcch
Confidence 444444556666666644
No 171
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=46.29 E-value=16 Score=29.95 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=52.2
Q ss_pred CEEEEecCCCCCCH-H----HHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCe-EEEE
Q 025055 60 STVYVSNLDYALTN-S----DLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR-TVNA 133 (258)
Q Consensus 60 ~~lfV~nLp~~~te-~----~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~-~l~V 133 (258)
+++++.+|+..+-. . ....+|.+|-......+++ +.++--|.|.++..|..|...++...|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 56778888776532 2 2345566555444444432 234566889999999999999999999888 7888
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
-++.+...
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 88876533
No 172
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=44.97 E-value=19 Score=30.97 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
-||+-.++|++ |.||| .-||.++
T Consensus 195 tNLsed~~E~d--L~eLf-~~fg~i~ 217 (270)
T KOG0122|consen 195 TNLSEDMREDD--LEELF-RPFGPIT 217 (270)
T ss_pred ecCccccChhH--HHHHh-hccCccc
Confidence 99999999999 99999 9999874
No 173
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.57 E-value=54 Score=21.96 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=15.9
Q ss_pred HHHHHHhhcCCCeEEEEEe
Q 025055 74 SDLHTLFSTFGKIARVTVL 92 (258)
Q Consensus 74 ~~L~~~F~~~G~i~~v~i~ 92 (258)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877664
No 174
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=43.80 E-value=1.4e+02 Score=27.90 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=56.1
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhcC----CCeEEEEEeecCC----------CC----------------------
Q 025055 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTF----GKIARVTVLKDRA----------TR---------------------- 98 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~d~~----------tg---------------------- 98 (258)
..+..+|-|-||.|. +...+|..+|+.| |.|..|.|..... .|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456688999999997 6778899998865 4666665432100 00
Q ss_pred ----Cc-----------------------------ccEEEEEecchhHHHHHHHHhCCceeC--CeEEEEEEc
Q 025055 99 ----KS-----------------------------RGVAFIQFVQIPDALSAARAIHGKVLN--GRTVNASIA 136 (258)
Q Consensus 99 ----~~-----------------------------rG~aFV~f~~~~~a~~Ai~~l~g~~l~--g~~l~V~~a 136 (258)
+. .-||.|.+.+...+......++|..+. +..+.+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 00 127899999999999999999998874 344555543
No 175
>PRK11901 hypothetical protein; Reviewed
Probab=39.61 E-value=1.9e+02 Score=26.13 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEE--EEEecchhHHHHHHHHhCC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA--FIQFVQIPDALSAARAIHG 123 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~a--FV~f~~~~~a~~Ai~~l~g 123 (258)
.....+|-|..+ ..++.|..|...++ +..++|......|+.- |. |-.|.+.++|..|+..|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 344556655544 45778888887775 4555555443334431 33 3368899999999998754
No 176
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.21 E-value=1.5e+02 Score=21.06 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=40.7
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHH
Q 025055 62 VYVSNLDYALTNSDLHTLFST-FG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120 (258)
Q Consensus 62 lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~ 120 (258)
-|+--++..++..+|+..++. || .|..|..+.-+ ...-=|||++.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 455557889999999988886 55 67777766543 2223699999988888776543
No 177
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=34.03 E-value=1.6e+02 Score=20.50 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=40.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhc-CC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHH
Q 025055 61 TVYVSNLDYALTNSDLHTLFST-FG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~ 120 (258)
.-|+-.++..++..+|+..++. || .|..|..+.-+ ...-=|||++..-..|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 3566668899999999988886 55 67777665543 1223699999888777766443
No 178
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=32.33 E-value=29 Score=24.96 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHh
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLF 80 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F 80 (258)
....++|.|.|||..+.+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4556899999999999999998653
No 179
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.61 E-value=76 Score=27.66 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 93 (258)
....|+|||++++-.-|..++...-.+....++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 4677999999999999999987654554444443
No 180
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.00 E-value=99 Score=22.14 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=31.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEec
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV 109 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~ 109 (258)
...-||||+++..+.+.-...+....+.-.-+-+..+ ....||+|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 3456999999988887766665554444333333332 227789998874
No 181
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=30.49 E-value=95 Score=31.30 Aligned_cols=22 Identities=9% Similarity=0.388 Sum_probs=19.8
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
..++-..+|.+ |+.+| +.||-+
T Consensus 427 G~i~k~v~e~d--L~~~f-eefGei 448 (894)
T KOG0132|consen 427 GGIPKNVTEQD--LANLF-EEFGEI 448 (894)
T ss_pred ccccchhhHHH--HHHHH-Hhcccc
Confidence 78888889999 99999 999975
No 182
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.58 E-value=53 Score=29.08 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=23.2
Q ss_pred EEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 104 aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
|||+|.+..+|+.|++.+.... ...+.|..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999998654433 344566665
No 183
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.13 E-value=57 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV 89 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v 89 (258)
.+...+||+-|||..+|++.|..+.+++|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 4556789999999999999999999999865443
No 184
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=27.06 E-value=33 Score=19.76 Aligned_cols=20 Identities=40% Similarity=0.978 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPRN 173 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~ 173 (258)
.-.|+.|+..||+-.+||.+
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CCEeecCCCCCccHhHCCCC
Confidence 35688999999999999973
No 185
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=26.80 E-value=21 Score=30.77 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.1
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
-||++--++.+ |+||| +.||.+
T Consensus 89 ~NL~~~V~~~D--l~eLF-~~~~~~ 110 (243)
T KOG0533|consen 89 SNLPYGVIDAD--LKELF-AEFGEL 110 (243)
T ss_pred ecCCcCcchHH--HHHHH-HHhccc
Confidence 89999999999 99999 999743
No 186
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=26.79 E-value=21 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.3
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
.||+|+-+|+| +=||| ..-|.|
T Consensus 42 gNlSfyttEEq--iyELF-s~cG~i 63 (153)
T KOG0121|consen 42 GNLSFYTTEEQ--IYELF-SKCGDI 63 (153)
T ss_pred eeeeeeecHHH--HHHHH-Hhccch
Confidence 89999999999 99999 666654
No 187
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=25.97 E-value=3.5e+02 Score=21.80 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=47.6
Q ss_pred HHHHhhcCCCeEEEEEeecCCCCCcccEEEEEec-chhHHHHHHHHhCCceeCCeEEEEEEccCCCCCCcccccccCCCC
Q 025055 76 LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV-QIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDK 154 (258)
Q Consensus 76 L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~-~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~ 154 (258)
|...|...+-........+..||. .+|+... +....++++-.+-....-|+-+.+.+-.. ......+...+-++
T Consensus 58 l~~~l~~~~~~~~~~~~~~~~tGp---e~~~~v~~~a~~vK~~~i~iEe~hplGRL~DiDV~~~--~g~~iSR~~lg~~~ 132 (170)
T PF03802_consen 58 LEQQLSANGIFKLEQEILNDPTGP---EAFLVVDGDAEEVKRIMIEIEESHPLGRLFDIDVLDP--DGKQISREDLGLPP 132 (170)
T ss_pred HHHHHHHcCCeEeeeeeeecCCcc---eeeEEeCCCHHHHHHHHHHHHccCcchheEEEeeecC--CCCccCHHHcCCCC
Confidence 344444444333322222333443 4554443 56666666666766777888888887632 23334455566677
Q ss_pred CCCCCCCCCC
Q 025055 155 SRCYECGDEG 164 (258)
Q Consensus 155 ~~~~~~g~~g 164 (258)
..|+-|+...
T Consensus 133 R~CliC~~~A 142 (170)
T PF03802_consen 133 RRCLICGRPA 142 (170)
T ss_pred CcccCCChhH
Confidence 8898887664
No 188
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.04 E-value=30 Score=31.92 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=48.4
Q ss_pred CCEEEEecCCCCCCHH--------HHHHHhhc--CCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHH
Q 025055 59 KSTVYVSNLDYALTNS--------DLHTLFST--FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~--------~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~ 119 (258)
.+.+|+.++....+.. ++...|.. .+++..|..-++.....++|--|++|.....+++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3578888887765554 89999988 5677778777776567788999999999999998873
No 189
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.61 E-value=2.1e+02 Score=21.82 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=27.0
Q ss_pred CCCHHHHHHHhhcCCC----eEE-EEEeecCCCCCcccEEEEEecchhHHHH
Q 025055 70 ALTNSDLHTLFSTFGK----IAR-VTVLKDRATRKSRGVAFIQFVQIPDALS 116 (258)
Q Consensus 70 ~~te~~L~~~F~~~G~----i~~-v~i~~d~~tg~~rG~aFV~f~~~~~a~~ 116 (258)
+++..+|++-+...-. +.. ..+-..-.+|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4677787776654322 122 223333446788999987 777666553
No 190
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=24.54 E-value=2.4e+02 Score=27.00 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=42.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFS----TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~ 122 (258)
.+..+-++.-....+..+|..+|. .+|-|+.+.+...+. -......++.|.+.++|..++..+.
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 344555553333334457777775 678888887766543 2344577889999999999987753
No 191
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=23.96 E-value=31 Score=32.27 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=21.7
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.-+.++ |+++| ..||.+.
T Consensus 294 ~nlP~da~~~~--l~~~F-k~FG~Ik 316 (419)
T KOG0116|consen 294 KNLPPDATPAE--LEEVF-KQFGPIK 316 (419)
T ss_pred ecCCCCCCHHH--HHHHH-hhccccc
Confidence 99999999999 99999 9999874
No 192
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.75 E-value=1.3e+02 Score=28.78 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=44.1
Q ss_pred EEecCCCCCCH---HHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 63 YVSNLDYALTN---SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 63 fV~nLp~~~te---~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
+||||+.-... ..+..+=.+||+|-.+++-. .-.|...+.+.|+.|+. -|+..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 47888765443 44566666899999888743 24677888899999998 48888888875
No 193
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.31 E-value=81 Score=27.15 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhh
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFS 81 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~ 81 (258)
...++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 46789999999999999998886
No 194
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.19 E-value=1.6e+02 Score=20.58 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=24.6
Q ss_pred CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce
Q 025055 85 KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (258)
Q Consensus 85 ~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~ 125 (258)
.|.++..+ ...+||-||+=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45555553 3378999999999999999998776543
No 195
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.89 E-value=2.8e+02 Score=20.04 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=29.6
Q ss_pred EEEEecCCCCCCHHHH---HHHhhcCCCeEEEEE--eecCCCCCcccEEEEEec
Q 025055 61 TVYVSNLDYALTNSDL---HTLFSTFGKIARVTV--LKDRATRKSRGVAFIQFV 109 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L---~~~F~~~G~i~~v~i--~~d~~tg~~rG~aFV~f~ 109 (258)
..|+.+||..+-+..+ +..|..+.+-..|.+ ......+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4689999999887664 556666664444443 122335667777766554
No 196
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=20.79 E-value=3.2e+02 Score=22.38 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=41.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcccEEEEEecchhHHHHHHHHh
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT-RKSRGVAFIQFVQIPDALSAARAI 121 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t-g~~rG~aFV~f~~~~~a~~Ai~~l 121 (258)
.=||+|.+...+-..|.+.|...|. .|.++..+.+ ..+.++-+|.+.+.++...++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 5689999999999999999988885 4555554422 225689999999999999988754
No 197
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.69 E-value=1.5e+02 Score=21.78 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecch
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~ 111 (258)
...-||||+++..+.+.--..+-..++.-.-+-+..+ ..-.||+|-++-..
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 3456999998888776544444444443222222222 23349999887753
No 198
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.33 E-value=1.2e+02 Score=20.52 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEecchhHHHHHHHHhCCceeCC
Q 025055 103 VAFIQFVQIPDALSAARAIHGKVLNG 128 (258)
Q Consensus 103 ~aFV~f~~~~~a~~Ai~~l~g~~l~g 128 (258)
+.+|.|.+..+|.+|-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 78999999999999988776554443
No 199
>smart00343 ZnF_C2HC zinc finger.
Probab=20.23 E-value=65 Score=17.00 Aligned_cols=15 Identities=60% Similarity=1.750 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCC
Q 025055 157 CYECGDEGHLSYECP 171 (258)
Q Consensus 157 ~~~~g~~g~~~~~~~ 171 (258)
|+.|+..||+...|+
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 677888899888887
Done!