Query 025055
Match_columns 258
No_of_seqs 391 out of 2517
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:14:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 4.8E-23 1.6E-27 152.5 12.1 83 56-138 16-98 (99)
2 4f02_A Polyadenylate-binding p 99.9 1.9E-22 6.4E-27 168.9 10.1 82 57-138 13-94 (213)
3 3s8s_A Histone-lysine N-methyl 99.9 1E-21 3.5E-26 148.1 12.6 84 56-139 3-86 (110)
4 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.3E-21 7.8E-26 139.3 11.4 84 56-139 3-86 (87)
5 2lxi_A RNA-binding protein 10; 99.9 3.6E-22 1.2E-26 145.4 7.1 84 59-142 1-86 (91)
6 2khc_A Testis-specific RNP-typ 99.9 8.4E-21 2.9E-25 144.3 14.7 83 55-137 36-118 (118)
7 1fxl_A Paraneoplastic encephal 99.9 1.8E-21 6E-26 155.2 11.1 80 59-138 2-81 (167)
8 1b7f_A Protein (SXL-lethal pro 99.9 1.6E-21 5.3E-26 156.0 10.6 81 58-138 2-82 (168)
9 3md1_A Nuclear and cytoplasmic 99.9 6.4E-21 2.2E-25 135.7 12.1 81 60-140 2-82 (83)
10 2cpz_A CUG triplet repeat RNA- 99.9 8.7E-21 3E-25 143.6 13.6 86 56-141 22-107 (115)
11 2dgo_A Cytotoxic granule-assoc 99.9 2.1E-20 7.2E-25 141.4 15.6 87 56-142 12-98 (115)
12 2dgs_A DAZ-associated protein 99.9 8.3E-21 2.8E-25 139.9 13.0 85 56-141 7-91 (99)
13 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.5E-21 1.5E-25 142.0 11.5 87 56-142 9-95 (102)
14 2dnz_A Probable RNA-binding pr 99.9 7.6E-21 2.6E-25 138.8 12.6 87 56-142 2-88 (95)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4.2E-21 1.4E-25 137.3 10.9 82 56-137 4-85 (85)
16 2dnm_A SRP46 splicing factor; 99.9 5.8E-21 2E-25 141.7 12.0 86 56-141 10-95 (103)
17 2e5h_A Zinc finger CCHC-type a 99.9 8.9E-21 3E-25 138.2 12.8 82 56-137 13-94 (94)
18 2cq0_A Eukaryotic translation 99.9 8.8E-21 3E-25 140.7 12.7 86 56-141 12-97 (103)
19 1h2v_Z 20 kDa nuclear CAP bind 99.9 8.1E-21 2.8E-25 151.4 13.4 89 56-144 36-124 (156)
20 2lkz_A RNA-binding protein 5; 99.8 1.4E-21 5E-26 143.5 7.9 82 57-138 7-94 (95)
21 1whw_A Hypothetical protein ri 99.8 1.2E-20 4E-25 139.0 12.8 86 56-141 5-90 (99)
22 1u6f_A Tcubp1, RNA-binding pro 99.8 3.8E-20 1.3E-24 144.6 16.3 88 55-142 38-125 (139)
23 2do4_A Squamous cell carcinoma 99.8 2.3E-20 7.8E-25 137.7 14.2 85 56-141 14-98 (100)
24 2cqc_A Arginine/serine-rich sp 99.8 1.1E-20 3.9E-25 137.8 12.4 83 56-138 12-94 (95)
25 1x5u_A Splicing factor 3B subu 99.8 1.2E-20 4.1E-25 140.4 12.7 87 56-142 12-98 (105)
26 1x5s_A Cold-inducible RNA-bind 99.8 6.6E-21 2.3E-25 141.1 10.8 87 56-142 9-95 (102)
27 2x1f_A MRNA 3'-END-processing 99.8 1.2E-20 3.9E-25 138.4 11.8 84 58-141 1-84 (96)
28 1x5t_A Splicing factor 3B subu 99.8 7.8E-21 2.7E-25 139.1 10.8 86 57-142 3-89 (96)
29 4f25_A Polyadenylate-binding p 99.8 8.9E-21 3E-25 143.9 11.4 81 59-141 5-85 (115)
30 1l3k_A Heterogeneous nuclear r 99.8 7.6E-21 2.6E-25 155.9 11.7 83 56-139 10-92 (196)
31 1x4h_A RNA-binding protein 28; 99.8 2.6E-20 8.9E-25 139.9 13.6 87 56-142 12-104 (111)
32 2div_A TRNA selenocysteine ass 99.8 9.1E-21 3.1E-25 139.6 10.8 86 56-141 6-96 (99)
33 2dnh_A Bruno-like 5, RNA bindi 99.8 3.1E-20 1.1E-24 138.1 13.3 86 56-142 12-100 (105)
34 2la6_A RNA-binding protein FUS 99.8 1.7E-20 5.9E-25 138.2 11.6 82 56-137 10-99 (99)
35 1p27_B RNA-binding protein 8A; 99.8 1.3E-20 4.4E-25 140.5 11.0 85 56-140 20-104 (106)
36 2cqd_A RNA-binding region cont 99.8 6.4E-20 2.2E-24 139.0 15.0 86 56-142 14-99 (116)
37 3ex7_B RNA-binding protein 8A; 99.8 1E-20 3.6E-25 145.4 10.6 87 56-142 19-105 (126)
38 2dng_A Eukaryotic translation 99.8 4.5E-20 1.5E-24 137.0 13.7 84 56-141 12-95 (103)
39 2fy1_A RNA-binding motif prote 99.8 2.7E-20 9.2E-25 141.5 12.7 85 56-141 4-88 (116)
40 3n9u_C Cleavage and polyadenyl 99.8 1.2E-20 4.3E-25 150.8 11.2 84 56-139 52-137 (156)
41 1oo0_B CG8781-PA, drosophila Y 99.8 1.9E-20 6.6E-25 140.5 11.3 86 56-141 23-108 (110)
42 2cph_A RNA binding motif prote 99.8 3.1E-20 1.1E-24 138.5 12.3 86 56-141 12-99 (107)
43 2cq4_A RNA binding motif prote 99.8 1.6E-20 5.5E-25 141.9 10.8 82 57-139 23-104 (114)
44 1wi8_A EIF-4B, eukaryotic tran 99.8 4E-20 1.4E-24 137.5 12.8 84 56-141 12-96 (104)
45 2cpf_A RNA binding motif prote 99.8 1.7E-20 5.8E-25 137.8 10.6 85 57-141 3-90 (98)
46 1x4b_A Heterogeneous nuclear r 99.8 1.8E-20 6.3E-25 142.0 11.1 85 56-141 24-108 (116)
47 3p5t_L Cleavage and polyadenyl 99.8 2.8E-21 9.7E-26 140.1 6.2 82 60-141 2-85 (90)
48 3ns6_A Eukaryotic translation 99.8 3.4E-21 1.2E-25 142.6 6.7 83 57-139 4-93 (100)
49 2jrs_A RNA-binding protein 39; 99.8 2.8E-20 9.4E-25 139.7 11.7 84 56-139 23-106 (108)
50 2kxn_B Transformer-2 protein h 99.8 1.3E-20 4.5E-25 146.0 10.1 85 56-140 43-127 (129)
51 2dgp_A Bruno-like 4, RNA bindi 99.8 1.7E-20 5.8E-25 139.8 10.3 86 56-141 10-98 (106)
52 2d9p_A Polyadenylate-binding p 99.8 5E-20 1.7E-24 136.6 12.6 84 56-141 12-95 (103)
53 2dgx_A KIAA0430 protein; RRM d 99.8 4E-20 1.4E-24 135.7 11.7 83 56-141 6-92 (96)
54 3md3_A Nuclear and cytoplasmic 99.8 2.6E-20 8.8E-25 148.3 11.6 78 60-138 1-78 (166)
55 2dhg_A TRNA selenocysteine ass 99.8 2.7E-20 9.3E-25 138.2 10.9 85 56-141 6-92 (104)
56 2cpe_A RNA-binding protein EWS 99.8 5.1E-20 1.7E-24 138.9 12.4 86 56-141 12-105 (113)
57 2do0_A HnRNP M, heterogeneous 99.8 1.9E-19 6.5E-24 135.8 15.4 84 56-140 12-95 (114)
58 3ucg_A Polyadenylate-binding p 99.8 5.7E-20 1.9E-24 132.5 11.7 80 59-139 6-85 (89)
59 2cqp_A RNA-binding protein 12; 99.8 2.7E-20 9.4E-25 136.7 10.1 84 56-139 12-95 (98)
60 3ulh_A THO complex subunit 4; 99.8 6.5E-20 2.2E-24 136.8 12.2 81 56-137 26-106 (107)
61 3s7r_A Heterogeneous nuclear r 99.8 8.9E-20 3E-24 131.1 12.4 80 56-136 8-87 (87)
62 4a8x_A RNA-binding protein wit 99.8 4.4E-20 1.5E-24 132.6 10.6 82 58-139 3-85 (88)
63 2cq3_A RNA-binding protein 9; 99.8 2.1E-19 7.2E-24 133.2 14.5 85 56-142 12-96 (103)
64 2dh8_A DAZ-associated protein 99.8 5.1E-20 1.7E-24 137.1 11.0 85 56-141 13-97 (105)
65 2dgw_A Probable RNA-binding pr 99.8 1.2E-19 4E-24 131.6 12.7 83 56-141 7-89 (91)
66 2ywk_A Putative RNA-binding pr 99.8 5.4E-20 1.9E-24 134.3 11.0 82 56-138 13-94 (95)
67 1x4a_A Splicing factor, argini 99.8 2E-19 6.7E-24 134.8 14.1 83 56-141 19-101 (109)
68 3tyt_A Heterogeneous nuclear r 99.8 4.8E-20 1.6E-24 153.7 11.5 78 57-139 2-80 (205)
69 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.2E-19 7.4E-24 133.1 13.9 84 56-141 12-95 (103)
70 2m2b_A RNA-binding protein 10; 99.8 2E-20 6.7E-25 145.1 8.4 85 56-141 20-110 (131)
71 3nmr_A Cugbp ELAV-like family 99.8 5.1E-20 1.8E-24 147.9 10.9 81 58-138 2-87 (175)
72 2dgv_A HnRNP M, heterogeneous 99.8 8.5E-20 2.9E-24 132.4 10.8 84 56-141 5-88 (92)
73 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.3E-20 3.2E-24 146.8 12.2 87 56-142 69-155 (165)
74 2cqg_A TDP-43, TAR DNA-binding 99.8 3.1E-19 1.1E-23 132.3 14.1 84 56-141 12-95 (103)
75 2rs2_A Musashi-1, RNA-binding 99.8 9.8E-20 3.3E-24 136.8 11.2 85 56-141 22-106 (109)
76 3pgw_A U1-A; protein-RNA compl 99.8 4.8E-19 1.6E-23 153.7 17.3 82 56-140 6-91 (282)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2E-19 6.8E-24 140.3 12.8 83 54-136 58-140 (140)
78 1s79_A Lupus LA protein; RRM, 99.8 3.8E-20 1.3E-24 137.8 8.1 81 56-138 8-88 (103)
79 2ek1_A RNA-binding protein 12; 99.8 3.6E-20 1.2E-24 135.2 7.7 83 56-138 12-94 (95)
80 2dis_A Unnamed protein product 99.8 1.4E-19 4.7E-24 135.5 10.7 86 56-141 5-94 (109)
81 2kn4_A Immunoglobulin G-bindin 99.8 2.5E-19 8.4E-24 142.9 12.7 86 56-141 67-152 (158)
82 2err_A Ataxin-2-binding protei 99.8 1.6E-19 5.4E-24 135.7 10.8 82 56-139 26-107 (109)
83 1sjq_A Polypyrimidine tract-bi 99.8 9.4E-20 3.2E-24 135.8 9.4 81 56-142 13-95 (105)
84 1x4c_A Splicing factor, argini 99.8 6.2E-19 2.1E-23 132.1 14.0 78 57-141 13-95 (108)
85 1x4e_A RNA binding motif, sing 99.8 2E-20 6.8E-25 133.9 5.5 81 56-136 2-82 (85)
86 2qfj_A FBP-interacting repress 99.8 2.6E-20 9E-25 154.9 7.0 81 58-138 27-107 (216)
87 2jwn_A Embryonic polyadenylate 99.8 2.1E-19 7.2E-24 137.6 11.5 83 58-141 35-117 (124)
88 1wel_A RNA-binding protein 12; 99.8 5.9E-20 2E-24 141.1 8.3 83 56-139 22-104 (124)
89 1p1t_A Cleavage stimulation fa 99.8 7.9E-20 2.7E-24 135.6 8.6 85 57-141 6-90 (104)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.2E-20 1.1E-24 137.2 6.5 83 56-140 16-99 (100)
91 1x5o_A RNA binding motif, sing 99.8 5.8E-19 2E-23 133.2 13.6 83 56-139 22-112 (114)
92 2cpi_A CCR4-NOT transcription 99.8 1.6E-19 5.4E-24 136.0 10.3 85 56-140 12-102 (111)
93 2cjk_A Nuclear polyadenylated 99.8 1.1E-20 3.8E-25 151.0 4.2 78 58-137 2-79 (167)
94 3pgw_S U1-70K; protein-RNA com 99.8 7.4E-19 2.5E-23 162.1 16.9 86 56-141 99-184 (437)
95 2kt5_A RNA and export factor-b 99.8 1.8E-18 6.1E-23 132.6 16.3 85 56-141 32-116 (124)
96 2wbr_A GW182, gawky, LD47780P; 99.8 3E-19 1E-23 128.0 10.2 75 57-137 5-79 (89)
97 2fc9_A NCL protein; structure 99.8 6.5E-19 2.2E-23 130.1 12.4 82 56-141 12-93 (101)
98 2mss_A Protein (musashi1); RNA 99.8 5.7E-20 2E-24 128.4 6.4 75 61-136 1-75 (75)
99 1wez_A HnRNP H', FTP-3, hetero 99.8 2.4E-19 8.3E-24 133.2 10.0 82 56-140 12-93 (102)
100 2nlw_A Eukaryotic translation 99.8 2.8E-19 9.5E-24 133.3 10.3 82 57-140 13-101 (105)
101 2cq1_A PTB-like protein L; RRM 99.8 1.3E-18 4.5E-23 129.0 13.5 80 56-141 12-93 (101)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.5E-20 2.9E-24 128.0 6.6 76 60-136 1-76 (77)
103 2cpy_A RNA-binding protein 12; 99.8 2.4E-19 8.2E-24 135.7 9.4 82 56-139 12-94 (114)
104 2lea_A Serine/arginine-rich sp 99.8 8.7E-20 3E-24 142.4 7.1 86 56-141 44-129 (135)
105 3r27_A HnRNP L, heterogeneous 99.8 5.1E-19 1.8E-23 130.6 10.8 78 56-139 18-97 (100)
106 2e5j_A Methenyltetrahydrofolat 99.8 4.5E-19 1.5E-23 130.2 10.4 80 56-140 16-95 (97)
107 2a3j_A U1 small nuclear ribonu 99.8 3.5E-19 1.2E-23 137.6 10.2 82 56-140 26-111 (127)
108 2fc8_A NCL protein; structure 99.8 9.7E-19 3.3E-23 129.3 12.2 83 56-141 12-94 (102)
109 2dgu_A Heterogeneous nuclear r 99.8 1.8E-18 6.3E-23 128.2 13.6 79 56-142 8-86 (103)
110 3q2s_C Cleavage and polyadenyl 99.8 2E-19 6.8E-24 152.5 9.3 81 58-138 67-149 (229)
111 1wg5_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 131.5 10.6 82 56-139 12-94 (104)
112 2xnq_A Nuclear polyadenylated 99.8 1.1E-18 3.6E-23 128.4 11.7 77 56-140 19-96 (97)
113 1why_A Hypothetical protein ri 99.8 1.3E-18 4.4E-23 127.6 12.1 80 56-141 14-95 (97)
114 2ki2_A SS-DNA binding protein 99.8 4.5E-20 1.5E-24 133.4 4.2 81 60-141 2-82 (90)
115 2cpx_A Hypothetical protein FL 99.8 2.3E-19 7.9E-24 135.6 8.2 82 56-141 22-107 (115)
116 2dnq_A RNA-binding protein 4B; 99.8 1.1E-18 3.7E-23 126.3 11.1 79 56-142 5-83 (90)
117 2db1_A Heterogeneous nuclear r 99.8 4.9E-19 1.7E-23 134.9 9.6 82 56-139 14-98 (118)
118 2jvo_A Nucleolar protein 3; nu 99.8 7.5E-19 2.6E-23 131.8 10.4 78 56-141 28-105 (108)
119 2ad9_A Polypyrimidine tract-bi 99.8 8.1E-19 2.8E-23 133.7 10.6 81 56-142 28-110 (119)
120 2hvz_A Splicing factor, argini 99.8 7.1E-19 2.4E-23 129.9 10.0 78 60-142 1-78 (101)
121 1x4d_A Matrin 3; structural ge 99.8 5.7E-19 1.9E-23 131.1 9.2 79 56-140 12-93 (102)
122 1wex_A Hypothetical protein (r 99.8 1.4E-18 4.7E-23 129.6 11.2 80 56-141 12-93 (104)
123 3smz_A Protein raver-1, ribonu 99.8 7.8E-19 2.7E-23 152.5 11.4 82 57-138 93-174 (284)
124 2jvr_A Nucleolar protein 3; RN 99.8 5.9E-19 2E-23 133.1 9.0 81 56-140 25-106 (111)
125 2dgt_A RNA-binding protein 30; 99.8 3.1E-18 1.1E-22 124.4 12.5 79 56-142 7-85 (92)
126 1fj7_A Nucleolin RBD1, protein 99.8 9.6E-20 3.3E-24 134.6 4.3 83 57-141 15-97 (101)
127 1nu4_A U1A RNA binding domain; 99.8 5.4E-19 1.9E-23 129.4 8.3 83 56-141 5-91 (97)
128 2hgl_A HNRPF protein, heteroge 99.8 4.7E-19 1.6E-23 138.4 8.4 82 56-139 41-125 (136)
129 1wf1_A RNA-binding protein RAL 99.8 4.8E-18 1.6E-22 127.5 13.4 76 56-139 24-100 (110)
130 1x4g_A Nucleolysin TIAR; struc 99.8 2.1E-18 7.2E-23 129.2 11.4 80 56-141 22-101 (109)
131 2dnn_A RNA-binding protein 12; 99.8 1E-18 3.4E-23 131.4 9.6 79 57-138 14-92 (109)
132 2adc_A Polypyrimidine tract-bi 99.8 8.3E-19 2.8E-23 148.2 10.2 79 56-139 31-110 (229)
133 1fje_B Nucleolin RBD12, protei 99.8 7E-20 2.4E-24 147.7 3.2 82 56-139 10-91 (175)
134 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-18 5.8E-23 130.9 10.6 81 56-139 5-85 (115)
135 2ytc_A PRE-mRNA-splicing facto 99.8 2.7E-18 9.3E-23 122.6 11.0 76 56-137 9-85 (85)
136 2krb_A Eukaryotic translation 99.8 2.9E-19 1E-23 126.8 5.8 73 59-133 1-80 (81)
137 2cpj_A Non-POU domain-containi 99.8 2.3E-18 7.9E-23 126.7 10.8 80 56-141 12-91 (99)
138 2la4_A Nuclear and cytoplasmic 99.8 1.2E-18 4.1E-23 128.7 9.3 78 56-139 24-101 (101)
139 1x4f_A Matrin 3; structural ge 99.8 1.3E-18 4.4E-23 131.3 9.5 79 56-140 22-103 (112)
140 2cpd_A Apobec-1 stimulating pr 99.8 1.2E-17 4E-22 122.9 14.0 78 56-141 12-91 (99)
141 2dnp_A RNA-binding protein 14; 99.8 4.1E-18 1.4E-22 123.2 11.1 78 56-141 6-83 (90)
142 2lmi_A GRSF-1, G-rich sequence 99.8 3.7E-19 1.3E-23 133.1 5.7 82 56-139 8-92 (107)
143 1fjc_A Nucleolin RBD2, protein 99.8 1.1E-18 3.9E-23 127.5 8.1 81 56-141 13-93 (96)
144 1iqt_A AUF1, heterogeneous nuc 99.8 2.8E-19 9.6E-24 124.8 4.5 75 61-136 1-75 (75)
145 2lcw_A RNA-binding protein FUS 99.6 4.3E-20 1.5E-24 140.1 0.0 86 56-141 4-97 (116)
146 2kvi_A Nuclear polyadenylated 99.8 1.8E-18 6E-23 126.8 8.5 79 56-142 7-86 (96)
147 1qm9_A Polypyrimidine tract-bi 99.8 2.8E-18 9.6E-23 141.2 10.7 77 59-140 3-80 (198)
148 2xs2_A Deleted in azoospermia- 99.8 1.6E-18 5.6E-23 128.2 7.8 83 56-141 6-88 (102)
149 2f3j_A RNA and export factor b 99.8 8.5E-18 2.9E-22 137.0 12.6 84 55-139 84-167 (177)
150 2cqh_A IGF-II mRNA-binding pro 99.8 3.3E-18 1.1E-22 124.4 9.2 79 56-141 5-85 (93)
151 2i2y_A Fusion protein consists 99.8 4.4E-18 1.5E-22 134.7 10.4 80 56-140 70-149 (150)
152 2g4b_A Splicing factor U2AF 65 99.8 1.9E-18 6.6E-23 138.5 8.4 73 58-137 3-86 (172)
153 1whx_A Hypothetical protein ri 99.7 1.7E-18 5.8E-23 130.5 7.4 77 57-139 8-84 (111)
154 3sde_A Paraspeckle component 1 99.7 3.2E-18 1.1E-22 147.5 9.9 76 56-137 19-94 (261)
155 2j8a_A Histone-lysine N-methyl 99.7 4.7E-18 1.6E-22 129.8 9.5 78 60-137 3-94 (136)
156 2ghp_A U4/U6 snRNA-associated 99.7 2E-18 6.8E-23 150.5 8.6 81 58-139 116-197 (292)
157 3md3_A Nuclear and cytoplasmic 99.7 1.9E-17 6.6E-22 131.5 13.3 82 56-137 84-165 (166)
158 2yh0_A Splicing factor U2AF 65 99.7 4.9E-18 1.7E-22 139.2 10.1 75 58-139 3-88 (198)
159 2yh0_A Splicing factor U2AF 65 99.7 4.5E-17 1.5E-21 133.5 15.7 86 56-141 111-196 (198)
160 3egn_A RNA-binding protein 40; 99.7 6.4E-18 2.2E-22 132.7 9.6 82 56-140 42-131 (143)
161 2e5g_A U6 snRNA-specific termi 99.7 1.7E-17 5.8E-22 121.0 11.1 78 57-140 6-83 (94)
162 1x5p_A Negative elongation fac 99.7 5E-17 1.7E-21 119.1 13.6 78 56-141 12-89 (97)
163 2e44_A Insulin-like growth fac 99.7 8.2E-18 2.8E-22 122.9 9.3 79 57-139 13-92 (96)
164 2hgn_A Heterogeneous nuclear r 99.7 8.8E-19 3E-23 137.3 4.3 83 56-141 43-125 (139)
165 2ghp_A U4/U6 snRNA-associated 99.7 4.3E-18 1.5E-22 148.4 8.5 78 56-136 38-115 (292)
166 2hgm_A HNRPF protein, heteroge 99.7 6.3E-18 2.2E-22 130.2 8.3 80 56-138 39-120 (126)
167 2dha_A FLJ20171 protein; RRM d 99.7 3.5E-18 1.2E-22 131.2 6.8 80 57-138 21-104 (123)
168 2diu_A KIAA0430 protein; struc 99.7 1.5E-17 5E-22 120.4 9.1 75 57-141 6-86 (96)
169 1wg1_A KIAA1579 protein, homol 99.7 1.7E-17 5.8E-22 119.5 9.1 75 58-139 4-78 (88)
170 2g4b_A Splicing factor U2AF 65 99.7 4.2E-17 1.4E-21 130.7 12.4 79 58-136 93-171 (172)
171 2e5i_A Heterogeneous nuclear r 99.7 1.3E-16 4.3E-21 122.5 14.2 74 61-140 27-103 (124)
172 2qfj_A FBP-interacting repress 99.7 3.3E-17 1.1E-21 136.0 11.9 85 57-141 123-207 (216)
173 1l3k_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 134.0 11.6 86 56-142 101-186 (196)
174 3beg_B Splicing factor, argini 99.7 1.2E-17 3.9E-22 126.6 8.1 76 57-139 14-94 (115)
175 3d2w_A TAR DNA-binding protein 99.7 3.2E-17 1.1E-21 118.6 9.7 76 56-140 8-85 (89)
176 2cq2_A Hypothetical protein LO 99.7 1.8E-17 6.3E-22 125.1 8.7 79 56-140 22-107 (114)
177 3smz_A Protein raver-1, ribonu 99.7 2.8E-17 9.5E-22 142.7 11.1 72 58-136 21-92 (284)
178 2cjk_A Nuclear polyadenylated 99.7 1.6E-17 5.4E-22 132.6 7.8 81 58-139 86-166 (167)
179 3zzy_A Polypyrimidine tract-bi 99.7 9.4E-17 3.2E-21 123.9 11.3 77 59-140 28-107 (130)
180 4f02_A Polyadenylate-binding p 99.7 5.5E-17 1.9E-21 135.5 10.5 79 59-139 103-181 (213)
181 1sjr_A Polypyrimidine tract-bi 99.7 7.2E-17 2.5E-21 129.2 9.8 78 59-140 46-125 (164)
182 1b7f_A Protein (SXL-lethal pro 99.7 2E-16 6.9E-21 126.1 11.9 80 57-136 87-168 (168)
183 2dnl_A Cytoplasmic polyadenyla 99.7 7.7E-17 2.6E-21 121.8 8.9 78 57-137 6-86 (114)
184 2hzc_A Splicing factor U2AF 65 99.7 1.2E-16 4E-21 114.4 8.7 73 56-135 3-86 (87)
185 2pe8_A Splicing factor 45; RRM 99.7 3.9E-16 1.3E-20 116.4 11.5 83 56-138 5-93 (105)
186 1wf0_A TDP-43, TAR DNA-binding 99.7 7.4E-17 2.5E-21 116.0 6.6 78 57-141 3-80 (88)
187 2bz2_A Negative elongation fac 99.7 2.3E-16 7.9E-21 120.6 9.5 78 56-141 36-113 (121)
188 1fxl_A Paraneoplastic encephal 99.7 2.8E-16 9.5E-21 124.8 10.4 80 57-136 86-167 (167)
189 2voo_A Lupus LA protein; RNA-b 99.7 4.8E-16 1.6E-20 128.3 11.2 79 59-139 109-187 (193)
190 3nmr_A Cugbp ELAV-like family 99.7 3.7E-16 1.3E-20 125.2 10.3 80 57-137 93-175 (175)
191 1fje_B Nucleolin RBD12, protei 99.7 5.2E-16 1.8E-20 124.8 10.7 79 56-139 96-174 (175)
192 3pgw_A U1-A; protein-RNA compl 99.6 2.6E-15 9E-20 130.0 14.3 77 56-137 204-281 (282)
193 3u1l_A PRE-mRNA-splicing facto 99.6 4.8E-16 1.6E-20 132.0 8.5 80 56-141 131-231 (240)
194 2dit_A HIV TAT specific factor 99.6 8.5E-15 2.9E-19 110.2 12.0 82 56-141 12-104 (112)
195 3tyt_A Heterogeneous nuclear r 99.6 4.3E-15 1.5E-19 123.6 8.0 79 56-136 120-204 (205)
196 3v4m_A Splicing factor U2AF 65 99.6 1.2E-14 4.1E-19 108.3 9.5 82 57-138 3-96 (105)
197 1jmt_A Splicing factor U2AF 35 99.6 2.1E-15 7.3E-20 112.2 5.0 72 64-136 20-103 (104)
198 1qm9_A Polypyrimidine tract-bi 99.6 1.7E-14 5.8E-19 118.4 10.6 79 56-139 117-197 (198)
199 3sde_A Paraspeckle component 1 99.5 2.5E-14 8.6E-19 123.0 10.9 81 58-139 95-179 (261)
200 2adc_A Polypyrimidine tract-bi 99.5 2.2E-14 7.6E-19 120.9 10.2 79 56-139 148-228 (229)
201 3ue2_A Poly(U)-binding-splicin 99.5 2.9E-14 9.8E-19 108.4 8.9 80 58-137 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 2E-13 7E-18 100.7 11.5 76 59-141 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 2.6E-13 8.9E-18 120.9 10.5 77 55-137 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 2.3E-12 8E-17 97.2 10.1 79 56-138 4-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 1.6E-11 5.5E-16 87.9 9.8 77 56-141 4-88 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 3.2E-11 1.1E-15 91.5 8.9 77 55-137 14-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 5.3E-10 1.8E-14 80.4 7.5 72 56-136 12-92 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 9E-10 3.1E-14 92.1 8.3 66 72-137 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 7.8E-07 2.7E-11 65.3 9.8 72 58-135 20-96 (117)
210 2i2y_A Fusion protein consists 98.2 1.4E-07 4.7E-12 73.8 -0.0 41 97-138 9-50 (150)
211 2kn4_A Immunoglobulin G-bindin 98.2 5.7E-07 1.9E-11 70.7 3.1 36 88-125 2-37 (158)
212 1wey_A Calcipressin 1; structu 97.8 6E-05 2E-09 55.0 7.2 75 59-139 5-84 (104)
213 1uw4_A UPF3X; nonsense mediate 97.7 0.00067 2.3E-08 48.4 10.6 68 60-127 2-71 (91)
214 1whv_A Poly(A)-specific ribonu 97.6 0.00036 1.2E-08 50.1 8.0 54 59-121 16-69 (100)
215 2dhx_A Poly (ADP-ribose) polym 97.5 0.00094 3.2E-08 48.5 10.0 73 58-139 7-84 (104)
216 3ctr_A Poly(A)-specific ribonu 97.4 0.00037 1.3E-08 50.2 6.8 54 60-122 7-60 (101)
217 1wwh_A Nucleoporin 35, nucleop 96.9 0.005 1.7E-07 45.9 8.4 73 57-137 22-95 (119)
218 2l08_A Regulator of nonsense t 96.6 0.0057 1.9E-07 43.9 6.5 79 58-136 8-93 (97)
219 3p3d_A Nucleoporin 53; structu 95.9 0.0069 2.3E-07 45.9 4.1 77 59-137 7-97 (132)
220 3pgw_S U1-70K; protein-RNA com 95.9 0.00036 1.2E-08 64.0 -3.8 23 232-257 108-130 (437)
221 3pq1_A Poly(A) RNA polymerase; 95.7 0.0053 1.8E-07 56.4 3.1 55 59-119 53-107 (464)
222 1a6b_B Momulv, zinc finger pro 95.6 0.023 7.9E-07 33.8 4.7 33 150-182 6-38 (40)
223 2lea_A Serine/arginine-rich sp 95.1 0.0021 7.3E-08 48.9 -1.4 23 232-257 53-75 (135)
224 1u6p_A GAG polyprotein; MLV, A 94.7 0.03 1E-06 35.9 3.6 34 149-182 18-51 (56)
225 3r27_A HnRNP L, heterogeneous 94.5 0.0035 1.2E-07 45.4 -1.4 23 232-257 27-49 (100)
226 4fxv_A ELAV-like protein 1; RN 93.7 0.0094 3.2E-07 42.7 -0.5 23 232-257 25-47 (99)
227 2ad9_A Polypyrimidine tract-bi 93.7 0.017 5.7E-07 43.2 0.8 23 232-257 37-59 (119)
228 2cq1_A PTB-like protein L; RRM 93.3 0.017 6E-07 41.6 0.4 23 232-257 21-43 (101)
229 3d2w_A TAR DNA-binding protein 93.3 0.02 6.7E-07 40.1 0.7 23 232-257 17-39 (89)
230 1sjq_A Polypyrimidine tract-bi 93.3 0.012 4.1E-07 42.9 -0.5 23 232-257 22-44 (105)
231 1x4d_A Matrin 3; structural ge 93.1 0.016 5.5E-07 42.0 -0.1 23 232-257 21-44 (102)
232 1wex_A Hypothetical protein (r 93.0 0.022 7.6E-07 41.2 0.5 23 232-257 21-43 (104)
233 1wf0_A TDP-43, TAR DNA-binding 92.9 0.017 5.9E-07 40.0 -0.2 23 232-257 11-33 (88)
234 1wel_A RNA-binding protein 12; 92.9 0.045 1.5E-06 40.5 2.1 23 232-257 31-53 (124)
235 1x4c_A Splicing factor, argini 92.7 0.017 5.7E-07 41.9 -0.5 23 232-257 21-43 (108)
236 2lkz_A RNA-binding protein 5; 92.7 0.027 9.4E-07 40.1 0.6 22 232-256 15-36 (95)
237 2f3j_A RNA and export factor b 92.6 0.094 3.2E-06 41.6 3.8 29 212-257 88-116 (177)
238 1s79_A Lupus LA protein; RRM, 92.4 0.021 7E-07 41.3 -0.3 30 211-257 10-39 (103)
239 2cq4_A RNA binding motif prote 92.3 0.044 1.5E-06 39.8 1.3 30 211-257 24-53 (114)
240 3s7r_A Heterogeneous nuclear r 92.2 0.02 6.7E-07 39.5 -0.7 29 212-257 11-39 (87)
241 2mss_A Protein (musashi1); RNA 92.1 0.022 7.7E-07 38.0 -0.4 23 232-257 5-27 (75)
242 2e5g_A U6 snRNA-specific termi 92.0 0.026 8.8E-07 39.6 -0.2 23 232-257 14-36 (94)
243 2cqh_A IGF-II mRNA-binding pro 92.0 0.021 7.2E-07 39.9 -0.7 23 232-257 14-36 (93)
244 1wg5_A Heterogeneous nuclear r 91.9 0.027 9.3E-07 40.4 -0.2 22 232-256 21-42 (104)
245 3beg_B Splicing factor, argini 91.9 0.021 7.1E-07 41.9 -0.9 23 232-257 22-44 (115)
246 2cqd_A RNA-binding region cont 91.8 0.023 7.9E-07 41.5 -0.7 30 211-257 16-45 (116)
247 1uaw_A Mouse-musashi-1; RNP-ty 91.8 0.029 9.9E-07 37.5 -0.2 23 232-257 6-28 (77)
248 1iqt_A AUF1, heterogeneous nuc 91.5 0.021 7.1E-07 38.1 -1.2 23 232-257 5-27 (75)
249 2dgt_A RNA-binding protein 30; 91.4 0.028 9.7E-07 39.2 -0.5 23 232-257 16-38 (92)
250 1x4a_A Splicing factor, argini 91.4 0.046 1.6E-06 39.4 0.6 23 232-257 28-50 (109)
251 1x4f_A Matrin 3; structural ge 91.4 0.034 1.2E-06 41.0 -0.2 23 232-257 31-54 (112)
252 3zzy_A Polypyrimidine tract-bi 91.3 0.034 1.2E-06 42.2 -0.2 23 232-257 34-56 (130)
253 3ts2_A Protein LIN-28 homolog 91.3 0.034 1.2E-06 43.1 -0.2 20 154-173 97-116 (148)
254 1whx_A Hypothetical protein ri 91.2 0.042 1.4E-06 40.0 0.2 23 232-257 16-38 (111)
255 3ucg_A Polyadenylate-binding p 91.2 0.029 9.7E-07 38.7 -0.7 23 232-257 12-34 (89)
256 2e5h_A Zinc finger CCHC-type a 91.2 0.05 1.7E-06 37.9 0.5 29 212-257 16-44 (94)
257 2d9p_A Polyadenylate-binding p 91.2 0.037 1.3E-06 39.4 -0.2 23 232-257 21-43 (103)
258 3md1_A Nuclear and cytoplasmic 91.1 0.038 1.3E-06 37.4 -0.1 23 232-257 7-29 (83)
259 2cpf_A RNA binding motif prote 91.1 0.034 1.2E-06 39.1 -0.4 23 232-257 11-33 (98)
260 2m2b_A RNA-binding protein 10; 91.1 0.049 1.7E-06 40.8 0.5 22 232-256 29-50 (131)
261 2dha_A FLJ20171 protein; RRM d 91.1 0.047 1.6E-06 40.8 0.3 22 232-256 29-50 (123)
262 3ns6_A Eukaryotic translation 91.0 0.039 1.3E-06 39.3 -0.1 23 232-257 12-40 (100)
263 2cpz_A CUG triplet repeat RNA- 91.0 0.038 1.3E-06 40.2 -0.2 23 232-257 31-53 (115)
264 2cph_A RNA binding motif prote 91.0 0.036 1.2E-06 39.7 -0.4 23 232-257 21-43 (107)
265 2do0_A HnRNP M, heterogeneous 91.0 0.043 1.5E-06 39.8 0.1 23 232-257 21-43 (114)
266 2cqp_A RNA-binding protein 12; 91.0 0.043 1.5E-06 38.6 0.0 23 232-257 21-43 (98)
267 2dgs_A DAZ-associated protein 90.9 0.04 1.4E-06 38.9 -0.2 23 232-257 16-38 (99)
268 1x4h_A RNA-binding protein 28; 90.9 0.036 1.2E-06 39.9 -0.4 23 232-257 21-43 (111)
269 2do4_A Squamous cell carcinoma 90.9 0.044 1.5E-06 38.7 0.1 23 232-257 23-45 (100)
270 1x4b_A Heterogeneous nuclear r 90.9 0.094 3.2E-06 38.1 1.9 31 210-257 25-55 (116)
271 2dh8_A DAZ-associated protein 90.9 0.038 1.3E-06 39.5 -0.3 23 232-257 22-44 (105)
272 3p5t_L Cleavage and polyadenyl 90.9 0.052 1.8E-06 37.7 0.4 20 232-254 7-26 (90)
273 2ywk_A Putative RNA-binding pr 90.9 0.039 1.3E-06 38.5 -0.3 30 211-257 15-44 (95)
274 2cqg_A TDP-43, TAR DNA-binding 90.8 0.038 1.3E-06 39.3 -0.4 23 232-257 21-43 (103)
275 2cqc_A Arginine/serine-rich sp 90.8 0.055 1.9E-06 37.7 0.5 30 211-257 14-43 (95)
276 2cq3_A RNA-binding protein 9; 90.8 0.041 1.4E-06 39.1 -0.2 23 232-257 21-43 (103)
277 2wbr_A GW182, gawky, LD47780P; 90.8 0.043 1.5E-06 38.7 -0.1 23 232-257 13-35 (89)
278 3d45_A Poly(A)-specific ribonu 90.8 0.65 2.2E-05 43.1 7.9 55 59-122 440-494 (507)
279 2fc9_A NCL protein; structure 90.8 0.043 1.5E-06 38.9 -0.1 29 212-257 15-43 (101)
280 2cqb_A Peptidyl-prolyl CIS-tra 90.7 0.047 1.6E-06 38.7 0.1 23 232-257 18-40 (102)
281 2dnm_A SRP46 splicing factor; 90.7 0.045 1.5E-06 38.9 -0.1 23 232-257 19-41 (103)
282 2ek1_A RNA-binding protein 12; 90.7 0.048 1.6E-06 38.0 0.1 23 232-257 21-43 (95)
283 2kvi_A Nuclear polyadenylated 90.7 0.046 1.6E-06 38.5 -0.0 23 232-257 16-39 (96)
284 2dnz_A Probable RNA-binding pr 90.7 0.045 1.6E-06 38.2 -0.1 23 232-257 11-33 (95)
285 1wez_A HnRNP H', FTP-3, hetero 90.6 0.054 1.9E-06 38.8 0.3 21 232-255 21-41 (102)
286 2cpe_A RNA-binding protein EWS 90.6 0.051 1.7E-06 39.4 0.1 23 232-257 21-43 (113)
287 2div_A TRNA selenocysteine ass 90.6 0.034 1.2E-06 39.2 -0.8 23 232-257 15-37 (99)
288 2jvr_A Nucleolar protein 3; RN 90.5 0.027 9.2E-07 41.4 -1.4 22 232-256 34-56 (111)
289 2dnh_A Bruno-like 5, RNA bindi 90.5 0.048 1.6E-06 38.9 -0.1 23 232-257 21-43 (105)
290 2dgv_A HnRNP M, heterogeneous 90.4 0.041 1.4E-06 38.2 -0.5 23 232-257 14-36 (92)
291 4a8x_A RNA-binding protein wit 90.4 0.041 1.4E-06 37.7 -0.5 23 232-257 10-32 (88)
292 2cpj_A Non-POU domain-containi 90.4 0.053 1.8E-06 38.3 0.1 23 232-257 21-43 (99)
293 2dnq_A RNA-binding protein 4B; 90.3 0.039 1.3E-06 38.2 -0.7 23 232-257 14-36 (90)
294 1x4e_A RNA binding motif, sing 90.3 0.038 1.3E-06 37.8 -0.7 23 232-257 11-33 (85)
295 2rs2_A Musashi-1, RNA-binding 90.2 0.043 1.5E-06 39.8 -0.5 29 212-257 25-53 (109)
296 3bs9_A Nucleolysin TIA-1 isofo 90.2 0.047 1.6E-06 37.4 -0.4 23 232-257 12-34 (87)
297 2e44_A Insulin-like growth fac 90.2 0.029 1E-06 39.3 -1.5 23 232-257 21-43 (96)
298 1whw_A Hypothetical protein ri 90.2 0.044 1.5E-06 38.6 -0.5 23 232-257 14-36 (99)
299 2dnp_A RNA-binding protein 14; 90.1 0.033 1.1E-06 38.7 -1.2 23 232-257 15-37 (90)
300 2dgu_A Heterogeneous nuclear r 90.1 0.034 1.2E-06 39.7 -1.2 23 232-257 17-39 (103)
301 2hgn_A Heterogeneous nuclear r 90.1 0.063 2.2E-06 41.0 0.3 20 232-254 52-71 (139)
302 2ytc_A PRE-mRNA-splicing facto 90.0 0.049 1.7E-06 37.1 -0.4 23 232-257 18-40 (85)
303 1fjc_A Nucleolin RBD2, protein 90.0 0.059 2E-06 37.7 0.1 30 211-257 15-44 (96)
304 2jvo_A Nucleolar protein 3; nu 90.0 0.06 2.1E-06 39.0 0.1 23 232-257 37-59 (108)
305 2khc_A Testis-specific RNP-typ 90.0 0.054 1.8E-06 39.6 -0.2 23 232-257 46-68 (118)
306 3egn_A RNA-binding protein 40; 89.9 0.051 1.7E-06 41.2 -0.4 23 232-257 51-73 (143)
307 1x5t_A Splicing factor 3B subu 89.9 0.052 1.8E-06 38.0 -0.3 23 232-257 11-33 (96)
308 2la4_A Nuclear and cytoplasmic 89.9 0.051 1.7E-06 38.5 -0.4 23 232-257 33-55 (101)
309 1x5u_A Splicing factor 3B subu 89.7 0.05 1.7E-06 38.8 -0.5 23 232-257 21-43 (105)
310 2xs2_A Deleted in azoospermia- 89.6 0.055 1.9E-06 38.4 -0.4 23 232-257 15-37 (102)
311 3mdf_A Peptidyl-prolyl CIS-tra 89.6 0.077 2.6E-06 36.1 0.4 23 232-257 13-35 (85)
312 1p1t_A Cleavage stimulation fa 89.6 0.06 2E-06 38.2 -0.2 30 211-257 7-36 (104)
313 1why_A Hypothetical protein ri 89.5 0.053 1.8E-06 38.1 -0.5 23 232-257 23-45 (97)
314 2e5j_A Methenyltetrahydrofolat 89.4 0.046 1.6E-06 38.5 -0.9 22 232-256 25-46 (97)
315 1wf1_A RNA-binding protein RAL 89.4 0.06 2E-06 38.8 -0.3 23 232-257 33-56 (110)
316 1wi8_A EIF-4B, eukaryotic tran 89.4 0.06 2.1E-06 38.3 -0.3 20 232-254 21-40 (104)
317 2cpy_A RNA-binding protein 12; 89.3 0.098 3.3E-06 38.1 0.8 22 232-256 21-42 (114)
318 2err_A Ataxin-2-binding protei 89.3 0.069 2.3E-06 38.6 -0.1 23 232-257 35-57 (109)
319 2dgo_A Cytotoxic granule-assoc 89.2 0.062 2.1E-06 39.0 -0.4 23 232-257 21-43 (115)
320 2dgp_A Bruno-like 4, RNA bindi 89.2 0.043 1.5E-06 39.2 -1.2 23 232-257 19-41 (106)
321 2cq0_A Eukaryotic translation 89.1 0.073 2.5E-06 37.8 -0.0 23 232-257 21-43 (103)
322 1x5s_A Cold-inducible RNA-bind 89.1 0.044 1.5E-06 38.8 -1.2 23 232-257 18-40 (102)
323 2cpd_A Apobec-1 stimulating pr 89.0 0.06 2.1E-06 38.0 -0.6 22 232-256 21-44 (99)
324 2cqi_A Nucleolysin TIAR; RNA r 89.0 0.043 1.5E-06 39.0 -1.4 23 232-257 21-43 (103)
325 2la6_A RNA-binding protein FUS 89.0 0.1 3.6E-06 36.7 0.7 23 232-257 19-41 (99)
326 3ulh_A THO complex subunit 4; 88.9 0.085 2.9E-06 37.7 0.2 23 232-257 35-57 (107)
327 2e5i_A Heterogeneous nuclear r 88.9 0.096 3.3E-06 39.2 0.5 23 232-257 31-53 (124)
328 2dhg_A TRNA selenocysteine ass 88.9 0.055 1.9E-06 38.5 -0.9 23 232-257 15-38 (104)
329 3ex7_B RNA-binding protein 8A; 88.8 0.087 3E-06 38.9 0.2 23 232-257 28-50 (126)
330 2xnq_A Nuclear polyadenylated 88.8 0.064 2.2E-06 37.9 -0.5 23 232-257 28-51 (97)
331 2db1_A Heterogeneous nuclear r 88.7 0.12 4E-06 38.0 0.9 21 232-255 23-43 (118)
332 2jwn_A Embryonic polyadenylate 88.6 0.063 2.2E-06 39.5 -0.7 30 211-257 35-64 (124)
333 2jrs_A RNA-binding protein 39; 88.6 0.077 2.6E-06 38.3 -0.2 23 232-257 32-54 (108)
334 2kxn_B Transformer-2 protein h 88.3 0.094 3.2E-06 39.3 0.1 23 232-257 52-74 (129)
335 1x5o_A RNA binding motif, sing 88.2 0.081 2.8E-06 38.3 -0.3 23 232-257 31-53 (114)
336 1p27_B RNA-binding protein 8A; 88.2 0.11 3.7E-06 37.0 0.4 23 232-257 29-51 (106)
337 2lmi_A GRSF-1, G-rich sequence 88.0 0.085 2.9E-06 37.9 -0.3 21 232-255 17-37 (107)
338 2j76_E EIF-4B, EIF4B, eukaryot 87.9 0.063 2.2E-06 38.1 -1.0 20 232-254 25-44 (100)
339 2kt5_A RNA and export factor-b 87.4 0.089 3E-06 38.8 -0.5 23 232-257 41-63 (124)
340 2cpi_A CCR4-NOT transcription 87.2 0.083 2.8E-06 38.2 -0.8 23 232-257 21-46 (111)
341 1dsq_A Nucleic acid binding pr 87.2 0.36 1.2E-05 25.6 2.0 20 155-174 3-22 (26)
342 1oo0_B CG8781-PA, drosophila Y 87.2 0.14 4.6E-06 36.8 0.4 23 232-257 32-54 (110)
343 2dgx_A KIAA0430 protein; RRM d 87.2 0.066 2.2E-06 37.7 -1.3 23 232-257 15-41 (96)
344 1x4g_A Nucleolysin TIAR; struc 87.2 0.061 2.1E-06 38.7 -1.5 23 232-257 31-53 (109)
345 1sjr_A Polypyrimidine tract-bi 87.1 0.065 2.2E-06 42.2 -1.5 23 232-257 52-74 (164)
346 2hgl_A HNRPF protein, heteroge 87.0 0.16 5.6E-06 38.5 0.8 22 232-256 50-71 (136)
347 1fj7_A Nucleolin RBD1, protein 87.0 0.047 1.6E-06 38.7 -2.2 22 232-256 23-44 (101)
348 2krb_A Eukaryotic translation 86.8 0.1 3.4E-06 35.3 -0.5 23 232-257 7-35 (81)
349 2ki2_A SS-DNA binding protein 86.8 0.045 1.5E-06 37.8 -2.4 23 232-257 7-29 (90)
350 2dis_A Unnamed protein product 86.8 0.072 2.5E-06 38.2 -1.3 21 232-255 14-34 (109)
351 1rk8_A CG8781-PA, CG8781-PA pr 86.6 0.15 5.2E-06 39.6 0.4 23 232-257 78-100 (165)
352 2dng_A Eukaryotic translation 86.5 0.12 4.2E-06 36.6 -0.2 20 232-254 21-40 (103)
353 1h2v_Z 20 kDa nuclear CAP bind 86.3 0.16 5.5E-06 39.0 0.4 23 232-257 45-67 (156)
354 3n9u_C Cleavage and polyadenyl 86.0 0.13 4.5E-06 39.9 -0.3 20 232-254 61-80 (156)
355 3q2s_C Cleavage and polyadenyl 85.7 0.12 4.3E-06 42.7 -0.6 22 232-256 74-97 (229)
356 2cpx_A Hypothetical protein FL 85.4 0.12 4.1E-06 37.4 -0.8 22 232-256 31-52 (115)
357 2hgm_A HNRPF protein, heteroge 85.3 0.21 7.1E-06 37.4 0.5 21 232-255 48-68 (126)
358 1nu4_A U1A RNA binding domain; 85.3 0.15 5E-06 35.6 -0.3 23 232-257 14-40 (97)
359 2g0c_A ATP-dependent RNA helic 85.0 2.4 8.3E-05 28.1 5.9 68 61-137 2-75 (76)
360 2nlw_A Eukaryotic translation 84.8 0.16 5.4E-06 36.3 -0.3 23 232-257 21-49 (105)
361 2dnn_A RNA-binding protein 12; 84.8 0.21 7E-06 36.3 0.3 26 211-253 15-40 (109)
362 2ku7_A MLL1 PHD3-CYP33 RRM chi 84.7 0.16 5.4E-06 37.9 -0.4 23 232-257 69-91 (140)
363 2diu_A KIAA0430 protein; struc 84.3 0.22 7.4E-06 35.6 0.2 25 232-257 15-42 (96)
364 2dgw_A Probable RNA-binding pr 84.0 0.19 6.5E-06 34.6 -0.2 19 232-253 16-34 (91)
365 1u6f_A Tcubp1, RNA-binding pro 83.6 0.1 3.5E-06 39.2 -1.9 29 212-257 42-70 (139)
366 1wg1_A KIAA1579 protein, homol 82.1 0.27 9.2E-06 33.7 -0.0 19 232-253 11-29 (88)
367 2hzc_A Splicing factor U2AF 65 81.6 0.17 5.9E-06 34.4 -1.2 19 232-253 12-30 (87)
368 2cq2_A Hypothetical protein LO 81.1 0.25 8.7E-06 36.3 -0.4 22 232-256 31-54 (114)
369 2fc8_A NCL protein; structure 80.9 0.24 8.2E-06 34.9 -0.7 22 232-256 21-42 (102)
370 2a3j_A U1 small nuclear ribonu 80.3 0.27 9.3E-06 36.8 -0.6 23 232-257 35-61 (127)
371 2voo_A Lupus LA protein; RNA-b 76.4 0.67 2.3E-05 37.0 0.7 23 232-257 115-137 (193)
372 1x5p_A Negative elongation fac 73.1 0.63 2.2E-05 32.4 -0.3 21 232-257 21-41 (97)
373 4f25_A Polyadenylate-binding p 69.1 1.4 4.7E-05 31.8 0.8 19 57-75 95-113 (115)
374 2lxi_A RNA-binding protein 10; 67.7 1.1 3.9E-05 30.8 0.1 20 232-253 7-26 (91)
375 1owx_A Lupus LA protein, SS-B, 66.5 1.4 4.9E-05 32.6 0.5 23 232-257 24-47 (121)
376 2dnl_A Cytoplasmic polyadenyla 64.5 1.3 4.4E-05 31.8 -0.2 17 232-250 14-30 (114)
377 2bz2_A Negative elongation fac 63.8 1.4 4.8E-05 32.3 -0.1 21 232-257 45-65 (121)
378 3u1l_A PRE-mRNA-splicing facto 60.5 2.5 8.4E-05 35.2 0.8 23 232-257 140-171 (240)
379 1cl4_A Protein (GAG polyprotei 60.1 12 0.00039 23.7 3.9 23 154-176 30-52 (60)
380 1nc8_A Nucleocapsid protein; H 59.2 4.9 0.00017 21.5 1.7 18 155-172 7-24 (29)
381 4e8u_A Putative uncharacterize 57.2 25 0.00086 27.5 6.1 57 60-119 13-81 (172)
382 3nyb_B Protein AIR2; polya RNA 56.0 5.5 0.00019 27.3 1.9 21 154-174 46-66 (83)
383 2ysa_A Retinoblastoma-binding 55.4 6.7 0.00023 24.7 2.1 21 154-174 7-27 (55)
384 2x1f_A MRNA 3'-END-processing 51.7 2.5 8.6E-05 29.0 -0.5 18 232-251 8-25 (96)
385 2ihx_A Nucleocapsid (NC) prote 49.0 7 0.00024 24.9 1.4 23 154-176 30-52 (61)
386 2li8_A Protein LIN-28 homolog 46.7 20 0.00067 23.9 3.4 21 153-173 23-43 (74)
387 2d9o_A DNAJ (HSP40) homolog, s 43.4 7 0.00024 27.6 0.8 18 237-257 28-45 (100)
388 2a51_A Nucleocapsid protein; s 39.6 18 0.00062 20.5 2.1 18 155-172 22-39 (39)
389 2ec7_A GAG polyprotein (PR55GA 35.8 27 0.00091 21.0 2.5 19 155-173 7-25 (49)
390 3fut_A Dimethyladenosine trans 33.1 44 0.0015 27.8 4.3 33 60-93 111-143 (271)
391 2bl6_A Nucleocapsid protein P1 32.3 28 0.00094 19.5 2.0 17 156-172 2-18 (37)
392 2dit_A HIV TAT specific factor 32.3 21 0.0007 25.1 1.9 13 244-257 42-54 (112)
393 1a1t_A Nucleocapsid protein; s 31.5 19 0.00064 22.1 1.3 19 155-173 34-52 (55)
394 1xn9_A 30S ribosomal protein S 29.0 92 0.0032 22.0 4.8 48 69-117 28-80 (101)
395 3uzu_A Ribosomal RNA small sub 29.0 27 0.00092 29.3 2.3 34 60-93 115-148 (279)
396 2cqf_A RNA-binding protein LIN 28.0 47 0.0016 21.1 2.8 18 155-172 8-25 (63)
397 3ts2_A Protein LIN-28 homolog 27.5 25 0.00086 26.6 1.7 22 154-175 119-140 (148)
398 4bby_A Alkyldihydroxyacetoneph 27.0 41 0.0014 31.9 3.4 55 66-121 350-408 (658)
399 1ywx_A 30S ribosomal protein S 26.8 1.1E+02 0.0039 21.5 4.9 47 69-116 28-79 (102)
400 2v94_A RPS24, 30S ribosomal pr 25.3 1.1E+02 0.0039 21.7 4.7 48 69-117 37-89 (107)
401 3lpe_A Putative transcription 24.2 1.7E+02 0.0059 19.8 5.6 35 85-124 39-73 (92)
402 1qyr_A KSGA, high level kasuga 23.2 67 0.0023 26.3 3.7 32 60-91 91-122 (252)
403 2es9_A Putative cytoplasmic pr 22.9 7.6 0.00026 27.2 -1.9 32 202-249 76-107 (115)
404 4eyt_A Telomerase associated p 21.5 2.1E+02 0.0071 19.8 9.4 57 57-121 10-66 (129)
405 3tqs_A Ribosomal RNA small sub 21.2 33 0.0011 28.3 1.3 33 61-93 98-130 (255)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=4.8e-23 Score=152.52 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=79.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...+++|||+|||+++|+++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.87 E-value=1.9e-22 Score=168.90 Aligned_cols=82 Identities=29% Similarity=0.396 Sum_probs=77.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|..||..||+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 025055 137 AD 138 (258)
Q Consensus 137 ~~ 138 (258)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=148.13 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+.+++++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9654
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=139.26 Aligned_cols=84 Identities=32% Similarity=0.506 Sum_probs=77.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|+++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9865
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=145.45 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=77.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC-CceeCCeEEEEEEc
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH-GKVLNGRTVNASIA 136 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~-g~~l~g~~l~V~~a 136 (258)
+++|||+|||+.+|+++|+++|+.|| .|.+|+|+.++.|+.++|||||+|.+.++|.+||+.|+ +..|.|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred cCCCCC
Q 025055 137 ADNGRA 142 (258)
Q Consensus 137 ~~~~~~ 142 (258)
.++++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887553
No 6
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=8.4e-21 Score=144.26 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=78.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
..++.++|||+|||+++++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|..||+.|||..|.|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35677999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ecc
Q 025055 135 IAA 137 (258)
Q Consensus 135 ~a~ 137 (258)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.86 E-value=1.8e-21 Score=155.21 Aligned_cols=80 Identities=26% Similarity=0.486 Sum_probs=77.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999999864
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=1.6e-21 Score=156.00 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
++++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred C
Q 025055 138 D 138 (258)
Q Consensus 138 ~ 138 (258)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=6.4e-21 Score=135.70 Aligned_cols=81 Identities=28% Similarity=0.430 Sum_probs=78.1
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
.+|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999876
Q ss_pred C
Q 025055 140 G 140 (258)
Q Consensus 140 ~ 140 (258)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=8.7e-21 Score=143.61 Aligned_cols=86 Identities=17% Similarity=0.388 Sum_probs=81.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987644
No 11
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.1e-20 Score=141.41 Aligned_cols=87 Identities=32% Similarity=0.519 Sum_probs=82.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
++++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9877554
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=139.86 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=80.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4566899999999999999999999999999999999999899999999999999999999998 999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987654
No 13
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-21 Score=141.98 Aligned_cols=87 Identities=31% Similarity=0.464 Sum_probs=81.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=138.85 Aligned_cols=87 Identities=29% Similarity=0.495 Sum_probs=81.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=4.2e-21 Score=137.27 Aligned_cols=82 Identities=33% Similarity=0.519 Sum_probs=78.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 55679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=141.70 Aligned_cols=86 Identities=29% Similarity=0.512 Sum_probs=81.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
|++...
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987644
No 17
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=138.21 Aligned_cols=82 Identities=57% Similarity=0.856 Sum_probs=78.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|++.||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 55678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=140.72 Aligned_cols=86 Identities=33% Similarity=0.472 Sum_probs=81.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 19
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=8.1e-21 Score=151.44 Aligned_cols=89 Identities=26% Similarity=0.419 Sum_probs=83.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCc
Q 025055 136 AADNGRASS 144 (258)
Q Consensus 136 a~~~~~~~~ 144 (258)
|++......
T Consensus 116 a~~~~~~~~ 124 (156)
T 1h2v_Z 116 DAGFKEGRQ 124 (156)
T ss_dssp ESCCCTTCC
T ss_pred CCCCCCcCC
Confidence 987665444
No 20
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=143.47 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCC--eEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc----eeCCeE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGK--IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK----VLNGRT 130 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~----~l~g~~ 130 (258)
..-.+|||+|||+.+|+++|+++|++||. |.+|+|+.|+.|++++|||||+|.+.++|.+||+.|||. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 679999999999999999999999999999999999996 589999
Q ss_pred EEEEEccC
Q 025055 131 VNASIAAD 138 (258)
Q Consensus 131 l~V~~a~~ 138 (258)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=138.98 Aligned_cols=86 Identities=27% Similarity=0.504 Sum_probs=81.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 22
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=3.8e-20 Score=144.64 Aligned_cols=88 Identities=24% Similarity=0.398 Sum_probs=82.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35667999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 025055 135 IAADNGRA 142 (258)
Q Consensus 135 ~a~~~~~~ 142 (258)
+|+++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=137.74 Aligned_cols=85 Identities=16% Similarity=0.420 Sum_probs=80.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ +++++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987643
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=137.83 Aligned_cols=83 Identities=33% Similarity=0.512 Sum_probs=79.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=140.42 Aligned_cols=87 Identities=26% Similarity=0.403 Sum_probs=81.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9876543
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.6e-21 Score=141.07 Aligned_cols=87 Identities=33% Similarity=0.627 Sum_probs=81.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||+.||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 55678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.2e-20 Score=138.39 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=79.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
++++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 025055 138 DNGR 141 (258)
Q Consensus 138 ~~~~ 141 (258)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.8e-21 Score=139.05 Aligned_cols=86 Identities=29% Similarity=0.476 Sum_probs=80.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV-TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.+.++|||+|||+.+++++|+++|+.||.|..| .|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=8.9e-21 Score=143.87 Aligned_cols=81 Identities=28% Similarity=0.450 Sum_probs=75.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
.++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|..||..||+..|.|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 45899999999999999999999999999999999999986
Q ss_pred CCC
Q 025055 139 NGR 141 (258)
Q Consensus 139 ~~~ 141 (258)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 30
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.84 E-value=7.6e-21 Score=155.85 Aligned_cols=83 Identities=22% Similarity=0.493 Sum_probs=77.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+++|+++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|..||.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44568999999999999999999999999999999999998999999999999999999999985 99999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
+...
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8653
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=139.86 Aligned_cols=87 Identities=28% Similarity=0.449 Sum_probs=81.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC------CceeCCe
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH------GKVLNGR 129 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~------g~~l~g~ 129 (258)
..+.++|||+|||+.+++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|..||..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4556899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccCCCCC
Q 025055 130 TVNASIAADNGRA 142 (258)
Q Consensus 130 ~l~V~~a~~~~~~ 142 (258)
.|.|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999876543
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.1e-21 Score=139.56 Aligned_cols=86 Identities=22% Similarity=0.424 Sum_probs=80.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeE-EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeE----
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA-RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT---- 130 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~---- 130 (258)
..+.++|||+|||+++++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 025055 131 VNASIAADNGR 141 (258)
Q Consensus 131 l~V~~a~~~~~ 141 (258)
|+|.+|++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999976543
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.1e-20 Score=138.12 Aligned_cols=86 Identities=26% Similarity=0.426 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC---eEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG---RTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g---~~l~ 132 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||..||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 79999999999999999999999999999988 9999
Q ss_pred EEEccCCCCC
Q 025055 133 ASIAADNGRA 142 (258)
Q Consensus 133 V~~a~~~~~~ 142 (258)
|.+|.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 34
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=138.23 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=78.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR--------VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
.++.++|||+|||+++++++|+++|+.||.|.. |.|+.++.+++++|||||+|.+.++|..||+.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 556799999999999999999999999999999 999999989999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 025055 128 GRTVNASIAA 137 (258)
Q Consensus 128 g~~l~V~~a~ 137 (258)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=140.47 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=80.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..++++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
|.+++
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 36
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.4e-20 Score=139.01 Aligned_cols=86 Identities=28% Similarity=0.501 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||..|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45568999999999999999999999999999999999998999999999999999999999999998 89999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
|......
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9765443
No 37
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=1e-20 Score=145.37 Aligned_cols=87 Identities=20% Similarity=0.379 Sum_probs=81.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
|.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 38
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.5e-20 Score=136.95 Aligned_cols=84 Identities=24% Similarity=0.487 Sum_probs=78.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.|| |..|.|+.++.+++++|||||+|.+.++|..|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44568999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987644
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=141.52 Aligned_cols=85 Identities=33% Similarity=0.537 Sum_probs=79.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+++...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 40
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=150.79 Aligned_cols=84 Identities=23% Similarity=0.378 Sum_probs=77.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
....++|||+|||+++|+++|+++|+.|| .|..|.|+.|+.+|+++|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 52 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 52 RNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ----CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 34568999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EEccCC
Q 025055 134 SIAADN 139 (258)
Q Consensus 134 ~~a~~~ 139 (258)
.+|.++
T Consensus 132 ~~a~~~ 137 (156)
T 3n9u_C 132 RPATRQ 137 (156)
T ss_dssp EECCHH
T ss_pred EEcCCC
Confidence 999754
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.9e-20 Score=140.50 Aligned_cols=86 Identities=21% Similarity=0.388 Sum_probs=81.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=138.53 Aligned_cols=86 Identities=29% Similarity=0.477 Sum_probs=80.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeec-CCCCCcccEEEEEecchhHHHHHHHHh-CCceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD-RATRKSRGVAFIQFVQIPDALSAARAI-HGKVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d-~~tg~~rG~aFV~f~~~~~a~~Ai~~l-~g~~l~g~~l~V 133 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|..||..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 455689999999999999999999999999999999998 788999999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.+++++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987644
No 43
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=141.91 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=78.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|| .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 44689999999999999999999999999999999999989999999999999999999999 89999999999999999
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
+++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=137.45 Aligned_cols=84 Identities=18% Similarity=0.426 Sum_probs=78.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT-RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t-g~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
..+.++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ ++++|||||+|.+.++|.+|| .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999887 999999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 025055 135 IAADNGR 141 (258)
Q Consensus 135 ~a~~~~~ 141 (258)
++.++..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987644
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=137.83 Aligned_cols=85 Identities=22% Similarity=0.465 Sum_probs=79.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCC---CCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA---TRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++. |+.++|||||+|.+.++|..||..||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.+++++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987644
No 46
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=142.03 Aligned_cols=85 Identities=22% Similarity=0.487 Sum_probs=79.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|..||.. ++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987754
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=2.8e-21 Score=140.14 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=73.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
.+|||+|||+++|+++|+++|+.|| .|.+|.|+.++.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 025055 138 DNGR 141 (258)
Q Consensus 138 ~~~~ 141 (258)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=3.4e-21 Score=142.63 Aligned_cols=83 Identities=25% Similarity=0.336 Sum_probs=78.9
Q ss_pred CCCCEEEEecCCC------CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC-e
Q 025055 57 PSKSTVYVSNLDY------ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG-R 129 (258)
Q Consensus 57 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g-~ 129 (258)
..+++|||+|||+ .+++++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|.+||..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3458999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEccCC
Q 025055 130 TVNASIAADN 139 (258)
Q Consensus 130 ~l~V~~a~~~ 139 (258)
.|.|.+|.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999764
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=139.68 Aligned_cols=84 Identities=26% Similarity=0.499 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9875
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.3e-20 Score=145.95 Aligned_cols=85 Identities=31% Similarity=0.507 Sum_probs=80.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 56678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 97653
No 51
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=1.7e-20 Score=139.81 Aligned_cols=86 Identities=31% Similarity=0.508 Sum_probs=80.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee---CCeEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL---NGRTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l---~g~~l~ 132 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|..||..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45668999999999999999999999999999999999998999999999999999999999999999987 899999
Q ss_pred EEEccCCCC
Q 025055 133 ASIAADNGR 141 (258)
Q Consensus 133 V~~a~~~~~ 141 (258)
|.++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987644
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=136.60 Aligned_cols=84 Identities=24% Similarity=0.464 Sum_probs=79.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987654
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=135.70 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=76.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
....++|||+|||+.+++++|+ ++|++||.|.+|.|+.++.+ +|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4556899999999999999999 99999999999999998765 8999999999999999999999999999999
Q ss_pred EEEEccCCCC
Q 025055 132 NASIAADNGR 141 (258)
Q Consensus 132 ~V~~a~~~~~ 141 (258)
+|.+|++...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 54
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.6e-20 Score=148.26 Aligned_cols=78 Identities=31% Similarity=0.459 Sum_probs=73.4
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
++|||+|||+++|+++|+++|+.||.|.+|.|+.++ +++++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999987 578999999999999999999999999999999999999854
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=138.22 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=80.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce-eCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFST-FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~-l~g~~l~V 133 (258)
..+.++|||+|||+++|+++|+++|+. ||.|..|.|+.++ ++.++|||||+|.+.++|..||..||+.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456689999999999999999999999 9999999999999 99999999999999999999999999999 99999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976644
No 56
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=138.85 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=80.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--------RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
....++|||+|||+.+++++|+++|+.||.|. .|.|+.++.+++++|||||+|.+.++|..||..||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45668999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 025055 128 GRTVNASIAADNGR 141 (258)
Q Consensus 128 g~~l~V~~a~~~~~ 141 (258)
|+.|.|.+++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987654
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=135.83 Aligned_cols=84 Identities=31% Similarity=0.487 Sum_probs=78.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|..||.|..|.|+.++ ++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4556899999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=5.7e-20 Score=132.47 Aligned_cols=80 Identities=28% Similarity=0.528 Sum_probs=76.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999989999999999999999999999 8999999999999999976
Q ss_pred C
Q 025055 139 N 139 (258)
Q Consensus 139 ~ 139 (258)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=136.73 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=78.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.+..++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 60
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=6.5e-20 Score=136.84 Aligned_cols=81 Identities=32% Similarity=0.590 Sum_probs=77.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=8.9e-20 Score=131.06 Aligned_cols=80 Identities=25% Similarity=0.466 Sum_probs=75.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+ +++..|.|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4566899999999999999999999999999999999999899999999999999999999997 588999999999998
Q ss_pred c
Q 025055 136 A 136 (258)
Q Consensus 136 a 136 (258)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=132.65 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=77.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC-cccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK-SRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~-~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
..++|||+|||+++++++|+++|+.||.|..|.|+.++.++. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999887766 8999999999999999999999999999999999999
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 63
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=133.23 Aligned_cols=85 Identities=28% Similarity=0.516 Sum_probs=78.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999998863 4899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=137.06 Aligned_cols=85 Identities=25% Similarity=0.503 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45668999999999999999999999999999999999998999999999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987644
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=131.59 Aligned_cols=83 Identities=13% Similarity=0.286 Sum_probs=77.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.| .|..|.|+.+ .+|+++|||||+|.+.++|..||. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4556899999999999999999999999 9999999999 689999999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.+++.
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987643
No 66
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=134.26 Aligned_cols=82 Identities=29% Similarity=0.423 Sum_probs=77.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++. +.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45568999999999999999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=134.82 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=76.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|..||+.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45568999999999999999999999999999999965 456899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++.+
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987644
No 68
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.82 E-value=4.8e-20 Score=153.72 Aligned_cols=78 Identities=15% Similarity=0.342 Sum_probs=72.4
Q ss_pred CCCCEEEEecCC-CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 57 PSKSTVYVSNLD-YALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 57 ~~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
+++++|||+||| +.+++++|+++|+.||.|.+|+|+.+ .+|||||+|.+.++|..||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 456899999999 89999999999999999999999865 379999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
No 69
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-19 Score=133.15 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=77.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45568999999999999999999999999999999999854 3689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987644
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=145.13 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=79.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEE--EEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc----eeCCe
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR--VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK----VLNGR 129 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~----~l~g~ 129 (258)
....++|||+|||+++|+++|+++|+.||.|.. |+|+.++.+|+++|||||+|.+. +|..||..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEccCCCC
Q 025055 130 TVNASIAADNGR 141 (258)
Q Consensus 130 ~l~V~~a~~~~~ 141 (258)
.|.|.++++..+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 71
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.82 E-value=5.1e-20 Score=147.93 Aligned_cols=81 Identities=25% Similarity=0.470 Sum_probs=73.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcccEEEEEecchhHHHHHHHHhCCceeC---CeEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATR--KSRGVAFIQFVQIPDALSAARAIHGKVLN---GRTVN 132 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg--~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~---g~~l~ 132 (258)
..++|||+|||+.+|+++|+++|+.||.|.+|.|+.++.++ +++|||||+|.+.++|..|+..|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45899999999999999999999999999999999998776 89999999999999999999999998775 56777
Q ss_pred EEEccC
Q 025055 133 ASIAAD 138 (258)
Q Consensus 133 V~~a~~ 138 (258)
|.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 777643
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=8.5e-20 Score=132.44 Aligned_cols=84 Identities=23% Similarity=0.398 Sum_probs=78.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456689999999999999999999999999999999985 789999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987643
No 73
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=9.3e-20 Score=146.78 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=80.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
+.++...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9876543
No 74
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-19 Score=132.31 Aligned_cols=84 Identities=26% Similarity=0.459 Sum_probs=78.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4456899999999999999999999999999999999999899999999999999999999998 57899999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987654
No 75
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=9.8e-20 Score=136.84 Aligned_cols=85 Identities=21% Similarity=0.442 Sum_probs=76.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..+ +..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 455689999999999999999999999999999999999989999999999999999999999976 5999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987643
No 76
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.82 E-value=4.8e-19 Score=153.68 Aligned_cols=82 Identities=27% Similarity=0.521 Sum_probs=75.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
..+.++|||+|||+.+|+++|+ ++|+.||.|..|.|+. +++++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567999999999999999966 8999999999999886 68899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 025055 132 NASIAADNG 140 (258)
Q Consensus 132 ~V~~a~~~~ 140 (258)
.|.+++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=140.30 Aligned_cols=83 Identities=34% Similarity=0.532 Sum_probs=78.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
....+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33567799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEc
Q 025055 134 SIA 136 (258)
Q Consensus 134 ~~a 136 (258)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-20 Score=137.84 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=76.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+++|+++|+++|+.||.|.+|.|+.++. +.++|||||+|.+.++|..||. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999986 9999999999999999999999 899999999999999
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=3.6e-20 Score=135.22 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=76.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.+..++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34458999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 80
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=135.50 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=79.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEe-ecCCCCCcccEEEEEecchhHHHHHHHHhC--CceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVL-KDRATRKSRGVAFIQFVQIPDALSAARAIH--GKVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~--g~~l~g~~l 131 (258)
..+.++|||+|||+.+++++|+++|..||. |..|.|+ .++.++.++|||||+|.+.++|..||..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345689999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 025055 132 NASIAADNGR 141 (258)
Q Consensus 132 ~V~~a~~~~~ 141 (258)
.|.+|.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.5e-19 Score=142.87 Aligned_cols=86 Identities=31% Similarity=0.548 Sum_probs=81.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
|++...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987543
No 82
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=135.66 Aligned_cols=82 Identities=30% Similarity=0.569 Sum_probs=76.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||..+++++|+++|+.||.|..|.|+.++ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4566899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9765
No 83
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.4e-20 Score=135.80 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=73.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC--ceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g--~~l~g~~l~V 133 (258)
.++.++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..||..|++ ..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 556799999999999999999999999999999999864 68999999999999999998864 7899999999
Q ss_pred EEccCCCCC
Q 025055 134 SIAADNGRA 142 (258)
Q Consensus 134 ~~a~~~~~~ 142 (258)
.+|+++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 84
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-19 Score=132.06 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=73.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC-----eEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG-----RTV 131 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g-----~~l 131 (258)
...++|||+|||+++++++|+++|..||.|..|.|+.+ |||||+|.+.++|..||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEEEccCCCC
Q 025055 132 NASIAADNGR 141 (258)
Q Consensus 132 ~V~~a~~~~~ 141 (258)
.|.+|.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 85
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-20 Score=133.91 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=76.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999998876
Q ss_pred c
Q 025055 136 A 136 (258)
Q Consensus 136 a 136 (258)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.81 E-value=2.6e-20 Score=154.88 Aligned_cols=81 Identities=26% Similarity=0.449 Sum_probs=74.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999998765
Q ss_pred C
Q 025055 138 D 138 (258)
Q Consensus 138 ~ 138 (258)
.
T Consensus 107 ~ 107 (216)
T 2qfj_A 107 N 107 (216)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=2.1e-19 Score=137.64 Aligned_cols=83 Identities=35% Similarity=0.551 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|| .|||..|.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999889999999999999999999999 799999999999999997
Q ss_pred CCCC
Q 025055 138 DNGR 141 (258)
Q Consensus 138 ~~~~ 141 (258)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 88
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.9e-20 Score=141.05 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+|+++|+++|..||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4566899999999999999999999999999986666666799999999999999999999999 999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 89
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.9e-20 Score=135.62 Aligned_cols=85 Identities=31% Similarity=0.534 Sum_probs=80.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 025055 137 ADNGR 141 (258)
Q Consensus 137 ~~~~~ 141 (258)
.+...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87644
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=137.22 Aligned_cols=83 Identities=19% Similarity=0.433 Sum_probs=75.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDR-ATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
....++|||+|||+++++++|+++|+.|| |..|.|+.++ .+|+++|||||+|.+.++|..|| .|||..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45569999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred EccCCC
Q 025055 135 IAADNG 140 (258)
Q Consensus 135 ~a~~~~ 140 (258)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 997653
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=133.24 Aligned_cols=83 Identities=19% Similarity=0.441 Sum_probs=77.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee--------C
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL--------N 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l--------~ 127 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4566899999999999999999999999999999999998 899999999999999999999999999999 6
Q ss_pred CeEEEEEEccCC
Q 025055 128 GRTVNASIAADN 139 (258)
Q Consensus 128 g~~l~V~~a~~~ 139 (258)
+++|.|.||.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999754
No 92
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=136.04 Aligned_cols=85 Identities=26% Similarity=0.476 Sum_probs=77.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHH---HHhhcCCCeEEEEEeecCCCC---CcccEEEEEecchhHHHHHHHHhCCceeCCe
Q 025055 56 APSKSTVYVSNLDYALTNSDLH---TLFSTFGKIARVTVLKDRATR---KSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~d~~tg---~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~ 129 (258)
....++|||+|||+.+++++|. ++|++||.|..|.|+.++.++ +++|||||+|.+.++|.+||..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456899999999999999999 999999999999999887644 5669999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 025055 130 TVNASIAADNG 140 (258)
Q Consensus 130 ~l~V~~a~~~~ 140 (258)
.|.|.+|.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998764
No 93
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=1.1e-20 Score=150.98 Aligned_cols=78 Identities=22% Similarity=0.541 Sum_probs=73.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
+.++|||+|||+++|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+.. +..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 358999999999999999999999999999999999988999999999999999999999984 678999999998864
No 94
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=7.4e-19 Score=162.12 Aligned_cols=86 Identities=28% Similarity=0.483 Sum_probs=80.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987644
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=1.8e-18 Score=132.60 Aligned_cols=85 Identities=31% Similarity=0.540 Sum_probs=80.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
|.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987544
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3e-19 Score=127.96 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
..+.-|||+||++.+|+++|+++|.+||+|.+++++. ++|||||+|.+.++|..|++.||+..|.|++|+|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4567899999999999999999999999999999965 6899999999999999999999999999999999998
Q ss_pred c
Q 025055 137 A 137 (258)
Q Consensus 137 ~ 137 (258)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.5e-19 Score=130.11 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=74.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.| .++.+ .+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4557899999999999999999999999977 56666 5799999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987644
No 98
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=5.7e-20 Score=128.39 Aligned_cols=75 Identities=25% Similarity=0.439 Sum_probs=72.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ ||+..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 9999999999999875
No 99
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=133.17 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+++|+++|+++|+.||.| .|.|+.++ +++++|||||+|.+.++|.+||. +|+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999955 99999998 89999999999999999999995 899999999999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=133.35 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=75.4
Q ss_pred CCCCEEEEecCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCe-
Q 025055 57 PSKSTVYVSNLDYAL------TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR- 129 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~- 129 (258)
...++|||+|||+.+ |+++|+.+|++||.|..|.|+ +.+|+++|||||+|.+.++|..||..|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999998 35899999999999999999999999999999998
Q ss_pred EEEEEEccCCC
Q 025055 130 TVNASIAADNG 140 (258)
Q Consensus 130 ~l~V~~a~~~~ 140 (258)
.|.|.+|.+..
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999997653
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=129.03 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=72.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh--CCceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI--HGKVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l--~g~~l~g~~l~V 133 (258)
.+++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456789999999999999999999999999999988754 789999999999999999977 467899999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.+|+.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99986644
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-20 Score=127.96 Aligned_cols=76 Identities=22% Similarity=0.511 Sum_probs=73.4
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..++ ..|.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999987
No 103
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=135.67 Aligned_cols=82 Identities=26% Similarity=0.353 Sum_probs=76.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKI-ARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
..+.++|||+|||+.+|+++|+++|+.||.| ..|.|+.++ +++++|||||+|.+.++|.+||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4456899999999999999999999999999 899999998 899999999999999999999986 9999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99765
No 104
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=8.7e-20 Score=142.39 Aligned_cols=86 Identities=31% Similarity=0.548 Sum_probs=81.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+++...
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987644
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=130.59 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=71.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce--eCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV--LNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~--l~g~~l~V 133 (258)
.+++++|||+|||+.+|+++|+++|++||.|.+|.++. .+|||||+|.+.++|..|+..|++.. |.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 56778999999999999999999999999999999974 46899999999999999999999875 78999999
Q ss_pred EEccCC
Q 025055 134 SIAADN 139 (258)
Q Consensus 134 ~~a~~~ 139 (258)
++++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999765
No 106
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=130.16 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=72.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|. +.++. +.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45568999999999999999999999999997 67764 46789999999999999999999999999999999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
++++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=137.56 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=74.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
.+++++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|..||..|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999865 7999999999988854 68899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 025055 132 NASIAADNG 140 (258)
Q Consensus 132 ~V~~a~~~~ 140 (258)
.|.||+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998754
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=129.29 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=76.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45568999999999999999999999873 678888888999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
|+++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987644
No 109
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.8e-18 Score=128.24 Aligned_cols=79 Identities=30% Similarity=0.475 Sum_probs=72.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+ +|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999986 35999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
++++...
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9876554
No 110
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=2e-19 Score=152.49 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=76.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..++|||+|||+++|+++|+++|+.|| .|..|.|+.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 025055 136 AAD 138 (258)
Q Consensus 136 a~~ 138 (258)
|++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 111
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=131.49 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=75.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR-VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
....++|||+|||+.+|+++|+++|..||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999997 889888 6899999999999999999999996 9999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98654
No 112
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=1.1e-18 Score=128.43 Aligned_cols=77 Identities=22% Similarity=0.413 Sum_probs=72.0
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
.++.++|||+|||+ .+++++|+++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 56779999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred EccCCC
Q 025055 135 IAADNG 140 (258)
Q Consensus 135 ~a~~~~ 140 (258)
+++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 997653
No 113
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=127.62 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=73.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC--CeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN--GRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~--g~~l~V 133 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.++.+ +|||||+|.+.++|..|+..||+..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 455689999999999999999999999999999999753 689999999999999999999999999 999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.++++++.
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987643
No 114
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=4.5e-20 Score=133.45 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=74.2
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.+ |..|+..|||..|.|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred CC
Q 025055 140 GR 141 (258)
Q Consensus 140 ~~ 141 (258)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=135.55 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=74.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeE----EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA----RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~----~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
.++.++|||+|||+.+|+++|+++|+.||.|. .+.+. +++++|||||+|.+.++|..||..||+..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45678999999999999999999999999984 45444 78899999999999999999999999999999999
Q ss_pred EEEEccCCCC
Q 025055 132 NASIAADNGR 141 (258)
Q Consensus 132 ~V~~a~~~~~ 141 (258)
.|.+|+++..
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 116
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=126.28 Aligned_cols=79 Identities=20% Similarity=0.451 Sum_probs=73.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4566899999999999999999999999999999997 57999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 117
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=4.9e-19 Score=134.90 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK---IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. ||+..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345689999999999999999999999999 89999999986 9999999999999999999999 999999999999
Q ss_pred EEEccCC
Q 025055 133 ASIAADN 139 (258)
Q Consensus 133 V~~a~~~ 139 (258)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=7.5e-19 Score=131.84 Aligned_cols=78 Identities=23% Similarity=0.486 Sum_probs=72.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 5567899999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+++...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987644
No 119
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=133.74 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=73.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC--ceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g--~~l~g~~l~V 133 (258)
.+++++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+||..|++ ..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 566789999999999999999999999999999999864 68999999999999999998874 6899999999
Q ss_pred EEccCCCCC
Q 025055 134 SIAADNGRA 142 (258)
Q Consensus 134 ~~a~~~~~~ 142 (258)
.+|+.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 120
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=129.90 Aligned_cols=78 Identities=31% Similarity=0.513 Sum_probs=73.4
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~~ 139 (258)
++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|..|+..||+..|.|+.|.|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 7899999999999999999999999999999999999887
Q ss_pred CCC
Q 025055 140 GRA 142 (258)
Q Consensus 140 ~~~ 142 (258)
.+.
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 121
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=131.15 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=71.2
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC--ceeCCeEEE
Q 025055 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g--~~l~g~~l~ 132 (258)
..++++|||+|||+ .+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..||..||+ ..|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999864 47999999999999999999886 459999999
Q ss_pred EEEccCCC
Q 025055 133 ASIAADNG 140 (258)
Q Consensus 133 V~~a~~~~ 140 (258)
|.+|+...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998653
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=129.59 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=71.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc--eeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK--VLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~--~l~g~~l~V 133 (258)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|++. .|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 455689999999999999999999999999999998753 689999999999999999988764 589999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.+++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986543
No 123
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.78 E-value=7.8e-19 Score=152.46 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=78.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
+..++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cC
Q 025055 137 AD 138 (258)
Q Consensus 137 ~~ 138 (258)
.+
T Consensus 173 ~~ 174 (284)
T 3smz_A 173 DA 174 (284)
T ss_dssp CG
T ss_pred CC
Confidence 64
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.9e-19 Score=133.10 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
.+..++|||+|||+++++++|+++|+.|| .|..|.|+. ..++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45568999999999999999999999999 899998863 3578999999999999999999999999999999999
Q ss_pred EccCCC
Q 025055 135 IAADNG 140 (258)
Q Consensus 135 ~a~~~~ 140 (258)
++...+
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 987543
No 125
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=124.36 Aligned_cols=79 Identities=20% Similarity=0.431 Sum_probs=72.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+. +||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 55678999999999999999999999999999999973 4999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876543
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=9.6e-20 Score=134.60 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+++|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34689999999999999999999999999888 667776789999999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 025055 137 ADNGR 141 (258)
Q Consensus 137 ~~~~~ 141 (258)
+++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87644
No 127
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=5.4e-19 Score=129.39 Aligned_cols=83 Identities=27% Similarity=0.512 Sum_probs=76.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
.+++++|||+|||+.+++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 57889999999999999999999999999999999
Q ss_pred EEEEccCCCC
Q 025055 132 NASIAADNGR 141 (258)
Q Consensus 132 ~V~~a~~~~~ 141 (258)
.|.+++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987643
No 128
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=4.7e-19 Score=138.41 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=76.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK---IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. ||+..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 89999999986 9999999999999999999999 999999999999
Q ss_pred EEEccCC
Q 025055 133 ASIAADN 139 (258)
Q Consensus 133 V~~a~~~ 139 (258)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998643
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=4.8e-18 Score=127.49 Aligned_cols=76 Identities=33% Similarity=0.603 Sum_probs=70.8
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
....++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|..||..||+..|.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445689999999999 999999999999999999988 46899999999999999999999999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
++++.
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99754
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=129.22 Aligned_cols=80 Identities=25% Similarity=0.509 Sum_probs=74.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.+..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 455789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987654
No 131
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=131.45 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=73.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
....+|||+|||+.+|+++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|.+|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 899999999985 999999999999999999999 59999999999999988
Q ss_pred cC
Q 025055 137 AD 138 (258)
Q Consensus 137 ~~ 138 (258)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 132
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.77 E-value=8.3e-19 Score=148.23 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=74.1
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
.+++++|||+|||+ .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|..||..|+|..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45679999999999 99999999999999999999999864 7899999999999999999999999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99765
No 133
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.77 E-value=7e-20 Score=147.68 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=71.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+++|+++|+++|..||.|.. .++.+..++.++|||||+|.+.++|..||+ |||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 456789999999999999999999999997766 334444578899999999999999999995 999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
+.+.
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8643
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.7e-18 Score=130.86 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=75.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.+++++|||+|||+.+++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 55699999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
+.+.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9754
No 135
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=122.58 Aligned_cols=76 Identities=33% Similarity=0.497 Sum_probs=70.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh-CCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI-HGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l-~g~~l~g~~l~V~ 134 (258)
....++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|..|+..| ++..|.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 44568999999999999999999999999999999986 3689999999999999999999 9999999999999
Q ss_pred Ecc
Q 025055 135 IAA 137 (258)
Q Consensus 135 ~a~ 137 (258)
+|+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 136
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=126.81 Aligned_cols=73 Identities=25% Similarity=0.400 Sum_probs=68.1
Q ss_pred CCEEEEecCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCe-EE
Q 025055 59 KSTVYVSNLDYAL------TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR-TV 131 (258)
Q Consensus 59 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~-~l 131 (258)
+++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|..||..|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 35899999999999999999999999999999999 88
Q ss_pred EE
Q 025055 132 NA 133 (258)
Q Consensus 132 ~V 133 (258)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=126.72 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=73.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 455689999999999999999999999999999999753 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987543
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-18 Score=128.68 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=72.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
.+..++|||+|||+.+++++|+.+|+.||.|.+|.++ +++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999997 3579999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|+++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8753
No 139
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=131.26 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=71.2
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC--ceeCCeEEE
Q 025055 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g--~~l~g~~l~ 132 (258)
..++++|||+|||++ +++++|+++|++||.|.+|.|+. ++|||||+|.+.++|..||..|++ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556899999999998 99999999999999999999974 478999999999999999998864 569999999
Q ss_pred EEEccCCC
Q 025055 133 ASIAADNG 140 (258)
Q Consensus 133 V~~a~~~~ 140 (258)
|.+|+.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997653
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=122.93 Aligned_cols=78 Identities=29% Similarity=0.524 Sum_probs=71.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTF--GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
..+.++|||+|||+.+++++|+++|+.| |.|..|.++ +|||||+|.+.++|..||..||+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4456899999999999999999999999 999998874 579999999999999999999999999999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.+++++.+
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 141
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=123.19 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=72.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+. +||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999973 4999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+++...
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-19 Score=133.10 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK---IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 455689999999999999999999999998 89999999986 9999999999999999999999 999999999999
Q ss_pred EEEccCC
Q 025055 133 ASIAADN 139 (258)
Q Consensus 133 V~~a~~~ 139 (258)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 143
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=127.51 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=73.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4456899999999999999999999999988766 23788999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987654
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=2.8e-19 Score=124.75 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=71.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999899999999999999999999998 5899999999999875
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.3e-20 Score=140.07 Aligned_cols=86 Identities=26% Similarity=0.408 Sum_probs=80.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR--------VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.++.+++++|||||+|.+.++|..||..||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 455689999999999999999999999999998 999999889999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 025055 128 GRTVNASIAADNGR 141 (258)
Q Consensus 128 g~~l~V~~a~~~~~ 141 (258)
|+.|.|.+++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987654
No 146
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.8e-18 Score=126.79 Aligned_cols=79 Identities=24% Similarity=0.465 Sum_probs=71.6
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
.++.++|||+|||+ .+++++|+.+|+.||.|..|.|. +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred EccCCCCC
Q 025055 135 IAADNGRA 142 (258)
Q Consensus 135 ~a~~~~~~ 142 (258)
+++++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 147
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=141.18 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=72.3
Q ss_pred CCEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 59 KSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 59 ~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
+++|||+|||+ .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998764 7899999999999999999999999999999999998
Q ss_pred CCC
Q 025055 138 DNG 140 (258)
Q Consensus 138 ~~~ 140 (258)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.6e-18 Score=128.16 Aligned_cols=83 Identities=20% Similarity=0.427 Sum_probs=76.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||. ++..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3445899999999999999999999999999999999998 89999999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+..+..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 986644
No 149
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=8.5e-18 Score=137.01 Aligned_cols=84 Identities=31% Similarity=0.548 Sum_probs=79.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
....+++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||..||+..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35667999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EccCC
Q 025055 135 IAADN 139 (258)
Q Consensus 135 ~a~~~ 139 (258)
+|...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99754
No 150
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=124.37 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=70.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCC-ceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG-KVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g-~~l~g~~l~V 133 (258)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|..||..||| ..|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345689999999999999999999999999 6666553 478999999999999999999999 9999999999
Q ss_pred EEccCCCC
Q 025055 134 SIAADNGR 141 (258)
Q Consensus 134 ~~a~~~~~ 141 (258)
.+++++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987644
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=4.4e-18 Score=134.67 Aligned_cols=80 Identities=29% Similarity=0.503 Sum_probs=74.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
++++.
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98753
No 152
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=1.9e-18 Score=138.54 Aligned_cols=73 Identities=21% Similarity=0.483 Sum_probs=65.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTF----G-------KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
+.++|||+|||+.+|+++|+++|+.| | .|.++.+. +++|||||+|.+.++|..|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45899999999999999999999999 6 77777764 34799999999999999999 8999999
Q ss_pred CCeEEEEEEcc
Q 025055 127 NGRTVNASIAA 137 (258)
Q Consensus 127 ~g~~l~V~~a~ 137 (258)
.|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999998764
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=130.49 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=71.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|..||..|||..|.|+.|.|.||
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998864 5689999999999999999999999999999999999
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 154
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.75 E-value=3.2e-18 Score=147.45 Aligned_cols=76 Identities=25% Similarity=0.452 Sum_probs=70.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+++|+++|+++|+.||.|..|.|.. ++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 45568999999999999999999999999999999964 468999999999999999999999999999999999
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
+.
T Consensus 93 a~ 94 (261)
T 3sde_A 93 AT 94 (261)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 155
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.7e-18 Score=129.82 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=71.4
Q ss_pred CEEEEecC----CCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecc----hhH----HHHHHH--HhCCce
Q 025055 60 STVYVSNL----DYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ----IPD----ALSAAR--AIHGKV 125 (258)
Q Consensus 60 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~----~~~----a~~Ai~--~l~g~~ 125 (258)
+.|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eCCeEEEEEEcc
Q 025055 126 LNGRTVNASIAA 137 (258)
Q Consensus 126 l~g~~l~V~~a~ 137 (258)
|+|+.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999853
No 156
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=2e-18 Score=150.47 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
..++|||+|||+.+++++|+++|+.|| .|..|.|+.++. +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999998874 889999999999999999999999999999999999998
Q ss_pred cCC
Q 025055 137 ADN 139 (258)
Q Consensus 137 ~~~ 139 (258)
.+.
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 157
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.9e-17 Score=131.50 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=78.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=4.9e-18 Score=139.19 Aligned_cols=75 Identities=20% Similarity=0.484 Sum_probs=66.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTF----G-------KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
..++|||+|||+.+|+++|+++|+.| | .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45899999999999999999999999 5 5666655 456899999999999999999 7999999
Q ss_pred CCeEEEEEEccCC
Q 025055 127 NGRTVNASIAADN 139 (258)
Q Consensus 127 ~g~~l~V~~a~~~ 139 (258)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988654
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=4.5e-17 Score=133.46 Aligned_cols=86 Identities=23% Similarity=0.404 Sum_probs=81.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
|.++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=132.66 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=73.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEE--------EEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV--------TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v--------~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
..++++|||+|||+.+|+++|+.+|+.||.|..| .+. .+++++|||||+|.+.++|..||..|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4556899999999999999999999999988763 333 27899999999999999999999999999999
Q ss_pred CeEEEEEEccCCC
Q 025055 128 GRTVNASIAADNG 140 (258)
Q Consensus 128 g~~l~V~~a~~~~ 140 (258)
|+.|.|.+|++..
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997653
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=120.97 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=69.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+++++++|+.+|+.||.|..| +.++.+++ ||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 56665665 99999999999999999 9999999999999988
Q ss_pred cCCC
Q 025055 137 ADNG 140 (258)
Q Consensus 137 ~~~~ 140 (258)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6553
No 162
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-17 Score=119.13 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=71.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|| .+|+++|+++|+.||.|..|.|. .++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999984 4678999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987644
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.2e-18 Score=122.91 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=71.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV-TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
...++|||+|||+.+++++|+.+|+.||.|..| .|+.++.++ .|||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345889999999999999999999999999999 588776543 499999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9876
No 164
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=8.8e-19 Score=137.30 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=75.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+++|+++|+++|+.|| |..|.|+.++. ++++|||||+|.+.++|.+|| .+|+..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999 67999999985 999999999999999999999 6899999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 165
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.73 E-value=4.3e-18 Score=148.36 Aligned_cols=78 Identities=24% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.+ ++|||||+|.+.++|..||. |++..|.|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 566799999999999999999999999999999999998643 58999999999999999995 999999999999987
Q ss_pred c
Q 025055 136 A 136 (258)
Q Consensus 136 a 136 (258)
+
T Consensus 115 ~ 115 (292)
T 2ghp_A 115 L 115 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=6.3e-18 Score=130.17 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=73.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeE--EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
....++|||+|||+++|+++|+++|+.| .|. .|.|+.++. |+++|||||+|.+.++|.+||. +++..|.|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4456899999999999999999999999 676 999999986 9999999999999999999998 5789999999999
Q ss_pred EEccC
Q 025055 134 SIAAD 138 (258)
Q Consensus 134 ~~a~~ 138 (258)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=131.18 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCe----EEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKI----ARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
....+|||+|||+++|+++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|.+||.. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346899999999999999999999999975 689999985 899999999999999999999995 99999999999
Q ss_pred EEEccC
Q 025055 133 ASIAAD 138 (258)
Q Consensus 133 V~~a~~ 138 (258)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=120.38 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCCE-EEEecCCCCCCHHH----HHHHhhcC-CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeE
Q 025055 57 PSKST-VYVSNLDYALTNSD----LHTLFSTF-GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130 (258)
Q Consensus 57 ~~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~ 130 (258)
+++.+ |||+|||+.+++++ |+++|++| |.|.+| ++ |||||.|.+.++|.+|++.|+|..|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34455 99999999999987 66899999 499998 34 99999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 025055 131 VNASIAADNGR 141 (258)
Q Consensus 131 l~V~~a~~~~~ 141 (258)
|+|++|+.+..
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987754
No 169
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.7e-17 Score=119.55 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=69.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
..++|||+|||+.+++++|+++|++| .|..|.|. +++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 578999999999999999999999999999999999986
Q ss_pred CC
Q 025055 138 DN 139 (258)
Q Consensus 138 ~~ 139 (258)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=4.2e-17 Score=130.67 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=76.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
..++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3689999999999999999999999999999999999889999999999999999999999999999999999999997
No 171
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-16 Score=122.47 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=67.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccE-EEEEecchhHHHHHHHHhCCceeCC--eEEEEEEcc
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV-AFIQFVQIPDALSAARAIHGKVLNG--RTVNASIAA 137 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-aFV~f~~~~~a~~Ai~~l~g~~l~g--~~l~V~~a~ 137 (258)
.|||+||++.+|+++|+++|++||.|..|.|+. + .|| |||+|.+.++|..|+..|||..|.| +.|+|.+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 467999999999999999999999999999965 2 286 9999999999999999999999987 699999998
Q ss_pred CCC
Q 025055 138 DNG 140 (258)
Q Consensus 138 ~~~ 140 (258)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3.3e-17 Score=136.03 Aligned_cols=85 Identities=24% Similarity=0.425 Sum_probs=80.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 025055 137 ADNGR 141 (258)
Q Consensus 137 ~~~~~ 141 (258)
.+.+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.3e-17 Score=134.03 Aligned_cols=86 Identities=20% Similarity=0.352 Sum_probs=76.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|+|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34558999999999999999999999999999999999998999999999999999999999985 89999999999999
Q ss_pred ccCCCCC
Q 025055 136 AADNGRA 142 (258)
Q Consensus 136 a~~~~~~ 142 (258)
|.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9877554
No 174
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.2e-17 Score=126.64 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=66.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeE-----E
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT-----V 131 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~-----l 131 (258)
...++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|..||+.||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34589999999999999999999999999999999865 89999999999999999999999999998 6
Q ss_pred EEEEccCC
Q 025055 132 NASIAADN 139 (258)
Q Consensus 132 ~V~~a~~~ 139 (258)
.|..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77666543
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=3.2e-17 Score=118.57 Aligned_cols=76 Identities=26% Similarity=0.389 Sum_probs=63.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce--eCCeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV--LNGRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~--l~g~~l~V 133 (258)
.++.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+ |++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 566799999999999999999999999999999999864 78999999999999883 45554 56999999
Q ss_pred EEccCCC
Q 025055 134 SIAADNG 140 (258)
Q Consensus 134 ~~a~~~~ 140 (258)
.+|.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998654
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=125.11 Aligned_cols=79 Identities=11% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCCCCEEEE--ecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee-----CC
Q 025055 56 APSKSTVYV--SNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL-----NG 128 (258)
Q Consensus 56 ~~~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l-----~g 128 (258)
..+..+||| |||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|||..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345688999 77999999999999999999999998863 368999999999999999999999998 78
Q ss_pred eEEEEEEccCCC
Q 025055 129 RTVNASIAADNG 140 (258)
Q Consensus 129 ~~l~V~~a~~~~ 140 (258)
++|.|.+++..+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999997553
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=2.8e-17 Score=142.65 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=67.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
+.++|||+|||+.+|+++|+++|+.|| |..|.+ ++++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 458999999999999999999999999 999888 456899999999999999999999999999999999873
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.6e-17 Score=132.56 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=77.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
...+|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999998899999999999999999999998 89999999999999998
Q ss_pred CC
Q 025055 138 DN 139 (258)
Q Consensus 138 ~~ 139 (258)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=9.4e-17 Score=123.94 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=70.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccE-EEEEecchhHHHHHHHHhCCceeCC--eEEEEEE
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV-AFIQFVQIPDALSAARAIHGKVLNG--RTVNASI 135 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-aFV~f~~~~~a~~Ai~~l~g~~l~g--~~l~V~~ 135 (258)
-..|||+||++.+|+++|+++|++||.|.+|.|+.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 357889999999999999999999999999988763 3578 9999999999999999999999988 8999999
Q ss_pred ccCCC
Q 025055 136 AADNG 140 (258)
Q Consensus 136 a~~~~ 140 (258)
+++..
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98764
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=5.5e-17 Score=135.49 Aligned_cols=79 Identities=29% Similarity=0.457 Sum_probs=74.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
..+|||+|||+.+|+++|+++|+.||.|..|+|+.+. +.++|||||+|.+.++|.+||+.|||..|+|+.|.|.+|++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999999985 45899999999999999999999999999999999999976
Q ss_pred C
Q 025055 139 N 139 (258)
Q Consensus 139 ~ 139 (258)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 5
No 181
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=7.2e-17 Score=129.15 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC--eEEEEEEc
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVNASIA 136 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g--~~l~V~~a 136 (258)
..+|||+||++.+|+++|+++|++||.|..|.|+.. .++|||||+|.+.++|..|++.|||..|.| +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 467899999999999999999999999999998753 357999999999999999999999999965 99999999
Q ss_pred cCCC
Q 025055 137 ADNG 140 (258)
Q Consensus 137 ~~~~ 140 (258)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=2e-16 Score=126.08 Aligned_cols=80 Identities=29% Similarity=0.590 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC--eEEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVNAS 134 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g--~~l~V~ 134 (258)
...++|||+|||..+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998889999999999999999999999999999988 999999
Q ss_pred Ec
Q 025055 135 IA 136 (258)
Q Consensus 135 ~a 136 (258)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=121.76 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC---CCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT---RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
...++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4468999999999999999999999999999 888888777 7999999999999999999999884 477887777
Q ss_pred EEcc
Q 025055 134 SIAA 137 (258)
Q Consensus 134 ~~a~ 137 (258)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6544
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=1.2e-16 Score=114.40 Aligned_cols=73 Identities=22% Similarity=0.492 Sum_probs=67.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTF----G-------KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~ 124 (258)
..+.++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3456899999999999999999999999 8 8999998754 689999999999999999 99999
Q ss_pred eeCCeEEEEEE
Q 025055 125 VLNGRTVNASI 135 (258)
Q Consensus 125 ~l~g~~l~V~~ 135 (258)
.|.|+.|.|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=3.9e-16 Score=116.42 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=73.5
Q ss_pred CCCCCEEEEecCCC-----CCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcccEEEEEecchhHHHHHHHHhCCceeCCe
Q 025055 56 APSKSTVYVSNLDY-----ALTNSDLHTLFSTFGKIARVTVLKDRAT-RKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129 (258)
Q Consensus 56 ~~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~d~~t-g~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~ 129 (258)
..++++|+|.||.. +-++++|+++|++||.|.+|.|+.++.+ ++++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34568999999963 2378999999999999999999998654 68999999999999999999999999999999
Q ss_pred EEEEEEccC
Q 025055 130 TVNASIAAD 138 (258)
Q Consensus 130 ~l~V~~a~~ 138 (258)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.4e-17 Score=116.03 Aligned_cols=78 Identities=26% Similarity=0.363 Sum_probs=66.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEc
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a 136 (258)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 34689999999999999999999999999999999864 68999999999999975432 134569999999999
Q ss_pred cCCCC
Q 025055 137 ADNGR 141 (258)
Q Consensus 137 ~~~~~ 141 (258)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.3e-16 Score=120.62 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=70.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
..+.++|||+|| ++|+++|+++|+.||.|..|.|. .++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 69999999999999999999985 4679999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025055 136 AADNGR 141 (258)
Q Consensus 136 a~~~~~ 141 (258)
++++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987643
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2.8e-16 Score=124.85 Aligned_cols=80 Identities=34% Similarity=0.556 Sum_probs=75.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeE--EEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT--VNAS 134 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~--l~V~ 134 (258)
....+|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999965 8888
Q ss_pred Ec
Q 025055 135 IA 136 (258)
Q Consensus 135 ~a 136 (258)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 189
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=4.8e-16 Score=128.27 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=72.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEccC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~~ 138 (258)
.++|||+|||+.+|+++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|..||..+ +..|.|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5899999999999999999999999999999999987 5899999999999999999999865 4699999999999765
Q ss_pred C
Q 025055 139 N 139 (258)
Q Consensus 139 ~ 139 (258)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=3.7e-16 Score=125.20 Aligned_cols=80 Identities=24% Similarity=0.415 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC---CeEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN---GRTVNA 133 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~---g~~l~V 133 (258)
...++|||+|||+.+|+++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+..|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 456899999999999999999999999999999999987 6899999999999999999999999998775 499999
Q ss_pred EEcc
Q 025055 134 SIAA 137 (258)
Q Consensus 134 ~~a~ 137 (258)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=5.2e-16 Score=124.84 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=72.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~ 135 (258)
....++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999988766 44789999999999999999999999999999999999999
Q ss_pred ccCC
Q 025055 136 AADN 139 (258)
Q Consensus 136 a~~~ 139 (258)
|.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9876
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=2.6e-15 Score=130.00 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=72.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC-CeEEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNAS 134 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~-g~~l~V~ 134 (258)
.++.++|||+|||..+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4567899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred Ecc
Q 025055 135 IAA 137 (258)
Q Consensus 135 ~a~ 137 (258)
||+
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=4.8e-16 Score=132.01 Aligned_cols=80 Identities=26% Similarity=0.428 Sum_probs=71.4
Q ss_pred CCCCCEEEEecCCCCC---------CHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 56 APSKSTVYVSNLDYAL---------TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
....++|||+||+..+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5567999999999998 7999999999999999999985 479999999999999999999999999
Q ss_pred ------------CCeEEEEEEccCCCC
Q 025055 127 ------------NGRTVNASIAADNGR 141 (258)
Q Consensus 127 ------------~g~~l~V~~a~~~~~ 141 (258)
.|+.|.|.||+..+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987643
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.5e-15 Score=110.16 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCCCCEEEEecCCCCCC-----------HHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc
Q 025055 56 APSKSTVYVSNLDYALT-----------NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~ 124 (258)
..+.++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|..|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45578999999944432 5799999999999999966 543 37999999999999999999999999
Q ss_pred eeCCeEEEEEEccCCCC
Q 025055 125 VLNGRTVNASIAADNGR 141 (258)
Q Consensus 125 ~l~g~~l~V~~a~~~~~ 141 (258)
.|.|+.|.|.++.++..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999987643
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=4.3e-15 Score=123.63 Aligned_cols=79 Identities=10% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCe--EEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCe----
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKI--ARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR---- 129 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i--~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~---- 129 (258)
.+++++|||+|||+.+|+++|+++|+.||.| ..|+++.+. +..+|||||+|.+.++|..||..|||..|.|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 4567899999999999999999999999999 899998775 55679999999999999999999999999886
Q ss_pred EEEEEEc
Q 025055 130 TVNASIA 136 (258)
Q Consensus 130 ~l~V~~a 136 (258)
++.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5777765
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.2e-14 Score=108.29 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=71.2
Q ss_pred CCCCEEEEecC--CCCCC--------HHHHHHHhhcCCCeEEEEEeecCCC--CCcccEEEEEecchhHHHHHHHHhCCc
Q 025055 57 PSKSTVYVSNL--DYALT--------NSDLHTLFSTFGKIARVTVLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGK 124 (258)
Q Consensus 57 ~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~d~~t--g~~rG~aFV~f~~~~~a~~Ai~~l~g~ 124 (258)
.+++.|.|.|+ |..+. +++|++.|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45688999998 44443 3689999999999999999988754 468999999999999999999999999
Q ss_pred eeCCeEEEEEEccC
Q 025055 125 VLNGRTVNASIAAD 138 (258)
Q Consensus 125 ~l~g~~l~V~~a~~ 138 (258)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999753
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=2.1e-15 Score=112.21 Aligned_cols=72 Identities=17% Similarity=0.403 Sum_probs=65.0
Q ss_pred EecCCCCCCHHHHHHHh------------hcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 64 VSNLDYALTNSDLHTLF------------STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 64 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
+.|||+.+++++|+++| ++||.|.+|.|+.+. +++++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888877766 999999999999887 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 025055 132 NASIA 136 (258)
Q Consensus 132 ~V~~a 136 (258)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=118.38 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC-CeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~-g~~l~V 133 (258)
.++.++|||+|||..+++++|+++|+.|| .|..|.|+.+ .+|||||+|.+.++|..|+..|||..|. |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999999 9999999753 3689999999999999999999999999 999999
Q ss_pred EEccCC
Q 025055 134 SIAADN 139 (258)
Q Consensus 134 ~~a~~~ 139 (258)
.|+++.
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998753
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.5e-14 Score=122.97 Aligned_cols=81 Identities=26% Similarity=0.362 Sum_probs=73.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC-CceeC---CeEEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH-GKVLN---GRTVNA 133 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~-g~~l~---g~~l~V 133 (258)
+..+|||+|||+.+|+++|+++|+.||.|..|.|+.+. +|+++|||||+|.+.++|..||..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 45799999999999999999999999999999999995 89999999999999999999999995 45554 999999
Q ss_pred EEccCC
Q 025055 134 SIAADN 139 (258)
Q Consensus 134 ~~a~~~ 139 (258)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2.2e-14 Score=120.91 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=72.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC-CeEEEE
Q 025055 56 APSKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNA 133 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~-g~~l~V 133 (258)
.++.++|||+|||+.+++++|+++|+.|| .|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45679999999999999999999999999 9999999653 3689999999999999999999999999 999999
Q ss_pred EEccCC
Q 025055 134 SIAADN 139 (258)
Q Consensus 134 ~~a~~~ 139 (258)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999763
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=2.9e-14 Score=108.45 Aligned_cols=80 Identities=18% Similarity=0.347 Sum_probs=70.5
Q ss_pred CCCEEEEecCCC--CC---CHHHHHHHhhcCCCeEEEEEeecCC----CCCcccEEEEEecchhHHHHHHHHhCCceeCC
Q 025055 58 SKSTVYVSNLDY--AL---TNSDLHTLFSTFGKIARVTVLKDRA----TRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128 (258)
Q Consensus 58 ~~~~lfV~nLp~--~~---te~~L~~~F~~~G~i~~v~i~~d~~----tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g 128 (258)
++++|+|.|+-. .+ -+++|++.|++||.|.+|.|+.++. +++++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 22 3688999999999999999998864 45688999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 025055 129 RTVNASIAA 137 (258)
Q Consensus 129 ~~l~V~~a~ 137 (258)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999975
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=100.67 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=63.6
Q ss_pred CCEEEEecCC-------CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEE
Q 025055 59 KSTVYVSNLD-------YALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (258)
Q Consensus 59 ~~~lfV~nLp-------~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l 131 (258)
..+|-|.-.. ..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..||..+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3456665433 468999999999999999999997 46899999999999999999997544 689999
Q ss_pred EEEEccCCCC
Q 025055 132 NASIAADNGR 141 (258)
Q Consensus 132 ~V~~a~~~~~ 141 (258)
.|.|+++++.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=2.6e-13 Score=120.93 Aligned_cols=77 Identities=14% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCCCCEEEEec--CCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee---CCe
Q 025055 55 LAPSKSTVYVSN--LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL---NGR 129 (258)
Q Consensus 55 ~~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l---~g~ 129 (258)
...++.+|||+| |++.+|+++|+++|++||.|..|.+.. +||||||+|.+.++|++||+.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356778999999 588999999999999999999987753 479999999999999999999999987 345
Q ss_pred --EEEEEEcc
Q 025055 130 --TVNASIAA 137 (258)
Q Consensus 130 --~l~V~~a~ 137 (258)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68888874
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=2.3e-12 Score=97.23 Aligned_cols=79 Identities=20% Similarity=0.334 Sum_probs=66.0
Q ss_pred CCCCCEEEEecCCCCCC----------HHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce
Q 025055 56 APSKSTVYVSNLDYALT----------NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~~t----------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~ 125 (258)
+.+++.|.|.|+=.... +++|++.|++||.|.+|.|..+. .+||+||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567888988733211 24789999999999999997652 58999999999999999999999999
Q ss_pred eCCeEEEEEEccC
Q 025055 126 LNGRTVNASIAAD 138 (258)
Q Consensus 126 l~g~~l~V~~a~~ 138 (258)
|+|+.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999853
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-11 Score=87.89 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=66.1
Q ss_pred CCCCCEEEEecCCC----CCCH----HHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 56 APSKSTVYVSNLDY----ALTN----SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 56 ~~~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
.|+..||+|.-++. .+-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 56678999988772 3333 5789999999999999999863 8999999999999998 9999999
Q ss_pred CeEEEEEEccCCCC
Q 025055 128 GRTVNASIAADNGR 141 (258)
Q Consensus 128 g~~l~V~~a~~~~~ 141 (258)
|+.|+|+++++.+-
T Consensus 75 Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 75 NRTITIALKSPSGP 88 (91)
T ss_dssp TEEEEEEECCCSSC
T ss_pred CeEEEEEeCCCCcc
Confidence 99999999987654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=3.2e-11 Score=91.55 Aligned_cols=77 Identities=21% Similarity=0.241 Sum_probs=69.2
Q ss_pred CCCCCCEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecc-hhHHHHHHHHhC--CceeCCeE
Q 025055 55 LAPSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ-IPDALSAARAIH--GKVLNGRT 130 (258)
Q Consensus 55 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~-~~~a~~Ai~~l~--g~~l~g~~ 130 (258)
.-+.++.|||+||++. ++.++|+++|+.||.|..|.++.+.. .|||.|.+ ..+|..|+..|+ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3677899999999999 99999999999999999999988764 69999999 799999999994 67899998
Q ss_pred EEEEEcc
Q 025055 131 VNASIAA 137 (258)
Q Consensus 131 l~V~~a~ 137 (258)
+.+++..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9888764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=5.3e-10 Score=80.43 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=62.6
Q ss_pred CCCCCEEEEecCCCC-----C-CH---HHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCcee
Q 025055 56 APSKSTVYVSNLDYA-----L-TN---SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (258)
Q Consensus 56 ~~~~~~lfV~nLp~~-----~-te---~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l 126 (258)
.|+..||+|.-++.. + .+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 667789999988743 2 32 4688999999999999999873 9999999999999998 999999
Q ss_pred CCeEEEEEEc
Q 025055 127 NGRTVNASIA 136 (258)
Q Consensus 127 ~g~~l~V~~a 136 (258)
+|+.|+|++-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=9e-10 Score=92.05 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=59.9
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecC----CCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEEEcc
Q 025055 72 TNSDLHTLFSTFGKIARVTVLKDR----ATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (258)
Q Consensus 72 te~~L~~~F~~~G~i~~v~i~~d~----~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~~a~ 137 (258)
.+++|.+.|++||.|.+|.|+.+. .+++++|++||+|.+.++|.+|+..|||..|.||.|.|.++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 467899999999999999998554 345899999999999999999999999999999999999974
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.52 E-value=7.8e-07 Score=65.32 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=66.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcC-----CCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTF-----GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
..++|-+-|||..+++..|+.++..+ |.|..|.++.|- +-|+|+|.+...|-+|.-+|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 999999998875 4799999999999999989999999999999
Q ss_pred EEE
Q 025055 133 ASI 135 (258)
Q Consensus 133 V~~ 135 (258)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 210
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.23 E-value=1.4e-07 Score=73.85 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=37.0
Q ss_pred CCCcccEEEEEecchhHHHHHHHHh-CCceeCCeEEEEEEccC
Q 025055 97 TRKSRGVAFIQFVQIPDALSAARAI-HGKVLNGRTVNASIAAD 138 (258)
Q Consensus 97 tg~~rG~aFV~f~~~~~a~~Ai~~l-~g~~l~g~~l~V~~a~~ 138 (258)
....+|+++|+|.+.++|++|+..| ||..|+| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567999999999999999999999 9999999 999998754
No 211
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.21 E-value=5.7e-07 Score=70.74 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=29.9
Q ss_pred EEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCce
Q 025055 88 RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (258)
Q Consensus 88 ~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~ 125 (258)
.+.|+.+. ..++|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 46677764 4689999999999999999999887644
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=6e-05 Score=54.96 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCEEEEecCCCCC-CH----HHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEE
Q 025055 59 KSTVYVSNLDYAL-TN----SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (258)
Q Consensus 59 ~~~lfV~nLp~~~-te----~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V 133 (258)
.++|+|.||+..+ .. ..++.+|..|+++........- .-..|.|.+.++|.+|-..||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998865 32 4679999999998887766532 25789999999999999999999999999999
Q ss_pred EEccCC
Q 025055 134 SIAADN 139 (258)
Q Consensus 134 ~~a~~~ 139 (258)
-++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.66 E-value=0.00067 Score=48.40 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=57.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cccEEEEEecchhHHHHHHHHhCCceeC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK--SRGVAFIQFVQIPDALSAARAIHGKVLN 127 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~--~rG~aFV~f~~~~~a~~Ai~~l~g~~l~ 127 (258)
++|.|.+||+.+|++++.+.++....+.-...+..+.+.. .-.-|||.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999988877777666543322 3467999999999999999999999873
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.56 E-value=0.00036 Score=50.11 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=46.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l 121 (258)
.+.++| ++|..+...||.++|+.||.| .|.++-|- -|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 466677 999999999999999999954 57788773 8999999999999999876
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00094 Score=48.46 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=60.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhc-----CCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFST-----FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~ 132 (258)
...+|.|.|||..+.++.|.-+|+. -|.|..|.... +-|+|+|.+...|++.|+. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3578999999999999999999986 24788887643 4799999999999999873 36889999999
Q ss_pred EEEccCC
Q 025055 133 ASIAADN 139 (258)
Q Consensus 133 V~~a~~~ 139 (258)
|....++
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9875544
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.44 E-value=0.00037 Score=50.18 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=46.8
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~ 122 (258)
+.++| ++|..+...||.++|+.|| -..|.++-|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 4568888773 89999999999999999764
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.90 E-value=0.005 Score=45.91 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCC-eEEEEEE
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG-RTVNASI 135 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g-~~l~V~~ 135 (258)
...+-|.|-++|... ...|...|++||.|.+..... ...+-.|.|.+..+|++||. .||..|.| -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 345788899999885 566778899999999887621 22499999999999999998 69999985 6677776
Q ss_pred cc
Q 025055 136 AA 137 (258)
Q Consensus 136 a~ 137 (258)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.59 E-value=0.0057 Score=43.93 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=55.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cccEEEEEecchhHHHHHHHHhCCceeCC-----eE
Q 025055 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK--SRGVAFIQFVQIPDALSAARAIHGKVLNG-----RT 130 (258)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~--~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g-----~~ 130 (258)
.+-+|.|..||+.+|++++.+.++..-.+.....+..+.+-+ .-..|||.|.+.+++....+.++|..+.+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 346799999999999999887777654443333332222211 23568999999999999999999998732 23
Q ss_pred EEEEEc
Q 025055 131 VNASIA 136 (258)
Q Consensus 131 l~V~~a 136 (258)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 456665
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.95 E-value=0.0069 Score=45.87 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=54.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEE-EEeec--------CCCC-----CcccEEEEEecchhHHHHHHHHhCCc
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARV-TVLKD--------RATR-----KSRGVAFIQFVQIPDALSAARAIHGK 124 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d--------~~tg-----~~rG~aFV~f~~~~~a~~Ai~~l~g~ 124 (258)
..-|.|-+.|...... +-..|++||.|..- .+... +.+. ....+-.|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3567888898776554 55679999998762 11110 0001 124578999999999999998 6999
Q ss_pred eeCCeEEEEEEcc
Q 025055 125 VLNGRTVNASIAA 137 (258)
Q Consensus 125 ~l~g~~l~V~~a~ 137 (258)
.|.|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888764
No 220
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.89 E-value=0.00036 Score=64.00 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.|++.+ |+++| ..||.|+
T Consensus 108 ~nL~~~~te~~--L~~~F-~~~G~I~ 130 (437)
T 3pgw_S 108 ARVNYDTTESK--LRREF-EVYGPIK 130 (437)
T ss_pred eCCCCCCCHHH--HHHHH-HHcCCee
Confidence 99999999999 99999 8999874
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.70 E-value=0.0053 Score=56.41 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHH
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~ 119 (258)
.+.|||. .|..+++.+|.++|++||+|.++.+-.+. | -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4799997 79999999999999999999998876543 2 599999999999887764
No 222
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=95.61 E-value=0.023 Score=33.85 Aligned_cols=33 Identities=30% Similarity=0.739 Sum_probs=27.1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025055 150 VYKDKSRCYECGDEGHLSYECPRNQLGPRERPM 182 (258)
Q Consensus 150 ~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 182 (258)
.......||.|+..||+.++||....+.+.+++
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~~~~~r~~~~ 38 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRP 38 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSSCCCTTCCCT
T ss_pred CCCCCCeeeECCCCCcchhhCcCCcccCCCCCC
Confidence 345568899999999999999998877776654
No 223
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.07 E-value=0.0021 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 53 ~nLp~~~te~~--L~~~F-~~~G~i~ 75 (135)
T 2lea_A 53 DNLTYRTSPDT--LRRVF-EKYGRVG 75 (135)
T ss_dssp ECCCSSCHHHH--HHHHH-GGGSCCS
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8899764
No 224
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=94.73 E-value=0.03 Score=35.94 Aligned_cols=34 Identities=32% Similarity=0.764 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025055 149 RVYKDKSRCYECGDEGHLSYECPRNQLGPRERPM 182 (258)
Q Consensus 149 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 182 (258)
+...+...||.||..|||.++||....+.+.+++
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~~~~~~~~~ 51 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRP 51 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCCCSSCSCCC
T ss_pred CCCCCCCcceeCCCCCcccccCcCCccccCCCCc
Confidence 4455668899999999999999998776666544
No 225
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.54 E-value=0.0035 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |+++| +.||.|.
T Consensus 27 ~NLp~~~te~~--L~~lF-~~fG~V~ 49 (100)
T 3r27_A 27 RGLIDGVVEAD--LVEAL-QEFGPIS 49 (100)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-hccCCEE
Confidence 99999999999 99999 8999874
No 226
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=93.70 E-value=0.0094 Score=42.72 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |+++| ..||.++
T Consensus 25 ~nLp~~~te~~--L~~~F-~~~G~I~ 47 (99)
T 4fxv_A 25 NYLPQNMTQDE--LRSLF-SSIGEVE 47 (99)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999864
No 227
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.67 E-value=0.017 Score=43.16 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.7
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |+++| ..||.|+
T Consensus 37 gNLp~~vte~d--L~~lF-~~fG~V~ 59 (119)
T 2ad9_A 37 RKLPIDVTEGE--VISLG-LPFGKVT 59 (119)
T ss_dssp ESCCTTCCHHH--HHHHH-TTTSCCC
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 9999874
No 228
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.35 E-value=0.017 Score=41.62 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |+++| ..||.++
T Consensus 21 ~nLp~~~te~~--L~~~F-~~fG~v~ 43 (101)
T 2cq1_A 21 RKLPGEVTETE--VIALG-LPFGKVT 43 (101)
T ss_dssp ESCCTTCCHHH--HHHTT-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 9999874
No 229
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.33 E-value=0.02 Score=40.08 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |+++| +.||.+.
T Consensus 17 ~~Lp~~~te~~--L~~~F-~~~G~i~ 39 (89)
T 3d2w_A 17 GRCTEDMTAEE--LQQFF-CQYGEVV 39 (89)
T ss_dssp ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-hccCCEE
Confidence 99999999999 99999 8999863
No 230
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.27 E-value=0.012 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |+++| ..||.|+
T Consensus 22 ~nLp~~vte~d--L~~lF-~~fG~V~ 44 (105)
T 1sjq_A 22 RKLPIDVTEGE--VISLG-LPFGKVT 44 (105)
T ss_dssp CSCCTTSCHHH--HHHHH-HHHCCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999864
No 231
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.12 E-value=0.016 Score=41.97 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=21.7
Q ss_pred cccch-hhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTI-WIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~-~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++ .++|++ |+++| ..||.|+
T Consensus 21 ~nLp~~~~te~d--L~~lF-~~fG~V~ 44 (102)
T 1x4d_A 21 MDFQRGKNLRYQ--LLQLV-EPFGVIS 44 (102)
T ss_dssp ESCCCSSSHHHH--HHTTT-GGGSCEE
T ss_pred eCCCCCcCCHHH--HHHHH-HhcCCEE
Confidence 99999 999999 99999 9999874
No 232
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.97 E-value=0.022 Score=41.25 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |+++| ..||.|.
T Consensus 21 ~nLp~~~te~~--L~~~F-~~fG~V~ 43 (104)
T 1wex_A 21 RGLCESVVEAD--LVEAL-EKFGTIC 43 (104)
T ss_dssp ESCCSSCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhCCCEE
Confidence 99999999999 99999 9999874
No 233
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.90 E-value=0.017 Score=39.95 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 11 ~nLp~~~te~~--l~~~F-~~~G~i~ 33 (88)
T 1wf0_A 11 GRCTGDMTEDE--LREFF-SQYGDVM 33 (88)
T ss_dssp ESCCSSSCHHH--HHHHS-TTTSCCC
T ss_pred eCCCCCCCHHH--HHHHH-HHcCCee
Confidence 99999999999 99999 9999864
No 234
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.90 E-value=0.045 Score=40.54 Aligned_cols=23 Identities=4% Similarity=0.114 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 31 ~nLp~~~te~~--l~~~F-~~~G~v~ 53 (124)
T 1wel_A 31 KGLPFEAENKH--VIDFF-KKLDIVE 53 (124)
T ss_dssp ECCCTTCCHHH--HHHHS-CSSCBCT
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCcc
Confidence 99999999999 99999 8999863
No 235
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.72 E-value=0.017 Score=41.86 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.|+
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~G~i~ 43 (108)
T 1x4c_A 21 SGLPPSGSWQD--LKDHM-REAGDVC 43 (108)
T ss_dssp ESCCSSCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEe
Confidence 99999999999 99999 8999764
No 236
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=92.66 E-value=0.027 Score=40.05 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.6
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+|+++ |+++| +.||.+
T Consensus 15 ~nL~~~~tee~--L~~~F-~~~G~i 36 (95)
T 2lkz_A 15 RNIAPHTVVDS--IMTAL-SPYASL 36 (95)
T ss_dssp ESCCTTCCHHH--HHHHS-TTTCCC
T ss_pred eCCCCcCCHHH--HHHHH-HhhCCc
Confidence 99999999999 99999 999953
No 237
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=92.62 E-value=0.094 Score=41.61 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=25.9
Q ss_pred HHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 212 EERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 212 ~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
..+|++ .||++.+++++ |+++| ..||.|+
T Consensus 88 ~~~l~V--------------~nLp~~~te~~--L~~~F-~~~G~I~ 116 (177)
T 2f3j_A 88 GAKLLV--------------SNLDFGVSDAD--IQELF-AEFGTLK 116 (177)
T ss_dssp CEEEEE--------------ECCCSCCCHHH--HHHHH-HHTSCCS
T ss_pred CCEEEE--------------eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 457999 99999999999 99999 8899763
No 238
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.40 E-value=0.021 Score=41.28 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ +||++.+++++ |+++| +.||.|+
T Consensus 10 ~~~~lfV--------------~~Lp~~~te~~--L~~~F-~~~G~v~ 39 (103)
T 1s79_A 10 KNRSVYI--------------KGFPTDATLDD--IKEWL-EDKGQVL 39 (103)
T ss_dssp GGGCEEE--------------ECCCTTCCHHH--HHHHH-HTSSCEE
T ss_pred CCCEEEE--------------ECCCCCCCHHH--HHHHH-hhcCCEE
Confidence 3567999 99999999999 99999 8999864
No 239
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.25 E-value=0.044 Score=39.80 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=26.7
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ .||++.+++++ |+++| ..||.|+
T Consensus 24 ~~~~l~V--------------~nlp~~~t~~~--l~~~F-~~~G~i~ 53 (114)
T 2cq4_A 24 DARTVFC--------------MQLAARIRPRD--LEDFF-SAVGKVR 53 (114)
T ss_dssp HHTEEEE--------------ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred CCCEEEE--------------eCCCCCCCHHH--HHHHH-HhCCCEe
Confidence 4567999 99999999999 99999 9999864
No 240
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=92.18 E-value=0.02 Score=39.48 Aligned_cols=29 Identities=10% Similarity=0.376 Sum_probs=26.1
Q ss_pred HHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 212 EERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 212 ~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
..+|++ +||++.+++++ |+++| ..||.+.
T Consensus 11 ~~~l~V--------------~nlp~~~t~~~--l~~~F-~~~G~i~ 39 (87)
T 3s7r_A 11 AGKMFV--------------GGLSWDTSKKD--LKDYF-TKFGEVV 39 (87)
T ss_dssp TTEEEE--------------ECCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred CCEEEE--------------eCCCCCCCHHH--HHHHH-HhCCCEE
Confidence 567999 99999999999 99999 9999863
No 241
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=92.14 E-value=0.022 Score=37.96 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=21.1
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 5 ~nlp~~~t~~~--l~~~F-~~~G~i~ 27 (75)
T 2mss_A 5 GGLSVNTTVED--VKHYF-EQFGKVD 27 (75)
T ss_dssp ECCCSSCCHHH--HHHHH-HTTSCCS
T ss_pred ecCCCCCCHHH--HHHHH-HhcCCEE
Confidence 89999999999 99999 8899863
No 242
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.00 E-value=0.026 Score=39.60 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 14 ~nl~~~~t~~~--l~~~F-~~~G~v~ 36 (94)
T 2e5g_A 14 SGFPRGVDSAQ--LSEYF-LAFGPVA 36 (94)
T ss_dssp ECCCTTCCHHH--HHHHG-GGTSCEE
T ss_pred ECCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 243
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.00 E-value=0.021 Score=39.91 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+|
T Consensus 14 ~nLp~~~t~~~--l~~~F-~~~G~vv 36 (93)
T 2cqh_A 14 GNLSPAVTADD--LRQLF-GDRKLPL 36 (93)
T ss_dssp ECCCTTCCHHH--HHHHH-HHTTCCC
T ss_pred eCCCCCCCHHH--HHHHH-HHcCCce
Confidence 99999999999 99999 9999843
No 244
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.91 E-value=0.027 Score=40.41 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=20.8
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+++++ |+++| ..||.+
T Consensus 21 ~nLp~~~te~~--l~~~F-~~~G~v 42 (104)
T 1wg5_A 21 RGLPFGCSKEE--IVQFF-SGLEIV 42 (104)
T ss_dssp ESCCTTCCHHH--HHHHT-TTCCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCc
Confidence 99999999999 99999 899975
No 245
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=91.87 E-value=0.021 Score=41.93 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.|+
T Consensus 22 ~nLp~~~t~~~--l~~~F-~~~G~v~ 44 (115)
T 3beg_B 22 SGLPPSGSWQD--LKDHM-REAGDVC 44 (115)
T ss_dssp EECCSSCCTTH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999764
No 246
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.80 E-value=0.023 Score=41.48 Aligned_cols=30 Identities=7% Similarity=0.277 Sum_probs=26.5
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ .||++.+++++ |+++| ..||.|+
T Consensus 16 ~~~~l~V--------------~nlp~~~t~~~--l~~~F-~~~G~i~ 45 (116)
T 2cqd_A 16 TFTKIFV--------------GGLPYHTTDAS--LRKYF-EGFGDIE 45 (116)
T ss_dssp SSSEEEE--------------ECCCSSCCHHH--HHHHH-HTTSCEE
T ss_pred CCCEEEE--------------eCCCCCCCHHH--HHHHH-HhCCCee
Confidence 3567999 99999999999 99999 8999863
No 247
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.79 E-value=0.029 Score=37.51 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 6 ~nlp~~~t~~~--l~~~F-~~~G~v~ 28 (77)
T 1uaw_A 6 GGLSWQTTQEG--LREYF-GQFGEVK 28 (77)
T ss_dssp ESCCSSCCSHH--HHHHH-TTTSCCC
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 89999999999 99999 8999763
No 248
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=91.45 E-value=0.021 Score=38.08 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=21.0
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 5 ~nLp~~~t~~~--l~~~F-~~~G~i~ 27 (75)
T 1iqt_A 5 GGLSPDTPEEK--IREYF-GGFGEVE 27 (75)
T ss_dssp SCCCSSCCHHH--HHHHH-HHHSCCS
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 89999999999 99999 8899763
No 249
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.44 E-value=0.028 Score=39.18 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 16 ~nLp~~~t~~~--l~~~F-~~~G~v~ 38 (92)
T 2dgt_A 16 GNISPTCTNQE--LRAKF-EEYGPVI 38 (92)
T ss_dssp ESCCSSCCHHH--HHHHH-HTTSCCC
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8899864
No 250
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.38 E-value=0.046 Score=39.35 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.|+
T Consensus 28 ~nLp~~~t~~~--l~~~F-~~~G~v~ 50 (109)
T 1x4a_A 28 GNLPPDIRTKD--IEDVF-YKYGAIR 50 (109)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8899873
No 251
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.37 E-value=0.034 Score=40.96 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.4
Q ss_pred cccchh-hhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIW-IISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~-~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++. ++|++ |+++| ..||.|+
T Consensus 31 ~NLp~~~~te~~--L~~lF-~~fG~V~ 54 (112)
T 1x4f_A 31 SNLPHSGYSDSA--VLKLA-EPYGKIK 54 (112)
T ss_dssp ESCCCSSCCSHH--HHTTT-TTTSCCS
T ss_pred eCCCCccCCHHH--HHHHH-HhcCCEE
Confidence 999998 99999 99999 9999874
No 252
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=91.34 E-value=0.034 Score=42.17 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.7
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |.++| +.||.|.
T Consensus 34 ~NL~~~vte~~--L~~lF-s~yG~V~ 56 (130)
T 3zzy_A 34 ENLFYPVTLDV--LHQIF-SKFGTVL 56 (130)
T ss_dssp ESCCSCCCHHH--HHHHH-TTSSCEE
T ss_pred CCCCCCCCHHH--HHHHH-hCcCCEE
Confidence 99999999999 99999 9999874
No 253
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=91.28 E-value=0.034 Score=43.09 Aligned_cols=20 Identities=40% Similarity=0.904 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPRN 173 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~ 173 (258)
...||.|+..||+..+|+..
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSC
T ss_pred CCcccEeCCccchhhhCCCC
Confidence 45699999999999999853
No 254
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.23 E-value=0.042 Score=40.00 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 16 ~nLp~~~te~~--L~~~F-~~~G~i~ 38 (111)
T 1whx_A 16 KNLPAGTLAAE--IQETF-SRFGSLG 38 (111)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999874
No 255
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=91.20 E-value=0.029 Score=38.69 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 12 ~nlp~~~t~~~--l~~~F-~~~G~i~ 34 (89)
T 3ucg_A 12 GNVDYGATAEE--LEAHF-HGCGSVN 34 (89)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGCCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhCCCEE
Confidence 99999999999 99999 8999863
No 256
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.16 E-value=0.05 Score=37.89 Aligned_cols=29 Identities=14% Similarity=0.449 Sum_probs=26.0
Q ss_pred HHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 212 EERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 212 ~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
..+|++ +||++.+++++ |+++| ..||.+.
T Consensus 16 ~~~l~V--------------~nlp~~~t~~~--l~~~f-~~~G~v~ 44 (94)
T 2e5h_A 16 KSTVYV--------------SNLPFSLTNND--LYRIF-SKYGKVV 44 (94)
T ss_dssp TTSEEE--------------ESCCTTSCHHH--HHHHT-TTTSCEE
T ss_pred CCEEEE--------------ECCCCCCCHHH--HHHHH-HhcCCeE
Confidence 457999 99999999999 99999 9999863
No 257
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.16 E-value=0.037 Score=39.41 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (103)
T 2d9p_A 21 KNLDDGIDDER--LRKAF-SPFGTIT 43 (103)
T ss_dssp ECCCTTCCHHH--HHHTT-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999863
No 258
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=91.12 E-value=0.038 Score=37.45 Aligned_cols=23 Identities=9% Similarity=0.423 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 7 ~nlp~~~t~~~--l~~~f-~~~G~i~ 29 (83)
T 3md1_A 7 GDLNVNVDDET--LRNAF-KDFPSYL 29 (83)
T ss_dssp ECCCTTCCHHH--HHHHH-TTSTTEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCee
Confidence 89999999999 99999 8999764
No 259
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.08 E-value=0.034 Score=39.12 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 11 ~nLp~~~t~~~--l~~~F-~~~G~i~ 33 (98)
T 2cpf_A 11 KNLNFSTTEET--LKGVF-SKVGAIK 33 (98)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999763
No 260
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=91.07 E-value=0.049 Score=40.78 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.++|++ |+++| ..||.+
T Consensus 29 ~nL~~~~te~~--L~~~F-~~~G~v 50 (131)
T 2m2b_A 29 RNLNPHSTMDS--ILGAL-APYAVL 50 (131)
T ss_dssp CSCCTTCCSHH--HHHHH-GGGCCC
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCc
Confidence 99999999999 99999 899987
No 261
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.05 E-value=0.047 Score=40.84 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=20.5
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.|++++ |+++| ..||.|
T Consensus 29 ~nLp~~~te~d--l~~~F-~~~g~v 50 (123)
T 2dha_A 29 RGLPFTATAEE--VVAFF-GQHCPI 50 (123)
T ss_dssp CSCCTTCCHHH--HHHHH-HTTSCC
T ss_pred eCCCCCCCHHH--HHHHH-HhhCCc
Confidence 99999999999 99999 889864
No 262
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=91.04 E-value=0.039 Score=39.32 Aligned_cols=23 Identities=9% Similarity=0.348 Sum_probs=21.3
Q ss_pred cccch------hhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTI------WIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~------~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++ .+++++ |+++| +.||.++
T Consensus 12 ~nLp~v~~~~~~~~~~~--L~~~F-~~~G~i~ 40 (100)
T 3ns6_A 12 NGAPVIPSAKVPVLKKA--LTSLF-SKAGKVV 40 (100)
T ss_dssp ESCCCCBGGGHHHHHHH--HHHHH-HTTSCEE
T ss_pred eCCCcCChHHHHHHHHH--HHHHH-HhcCCEe
Confidence 99999 999999 99999 8999874
No 263
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=91.02 E-value=0.038 Score=40.22 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.|+
T Consensus 31 ~nLp~~~t~~~--l~~~F-~~~G~i~ 53 (115)
T 2cpz_A 31 YHLPQEFGDQD--LLQMF-MPFGNVV 53 (115)
T ss_dssp ESCCSSCCHHH--HHHHH-GGGSCCS
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999864
No 264
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.00 E-value=0.036 Score=39.68 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.|+
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (107)
T 2cph_A 21 RNIPFQANQRE--IRELF-STFGELK 43 (107)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCcCCHHH--HHHHH-HccCCeE
Confidence 99999999999 99999 8999863
No 265
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.99 E-value=0.043 Score=39.76 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 21 ~nlp~~~~~~~--l~~~f-~~~G~i~ 43 (114)
T 2do0_A 21 ANLDYKVGWKK--LKEVF-SMAGVVV 43 (114)
T ss_dssp ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999763
No 266
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.96 E-value=0.043 Score=38.59 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~G~v~ 43 (98)
T 2cqp_A 21 QNMPFTVSIDE--ILDFF-YGYQVIP 43 (98)
T ss_dssp ESCCTTCCHHH--HHHHT-TTSCCCT
T ss_pred eCCCCCCCHHH--HHHHH-HHcCCcc
Confidence 99999999999 99999 9999874
No 267
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.94 E-value=0.04 Score=38.89 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 16 ~nlp~~~t~~~--l~~~F-~~~G~i~ 38 (99)
T 2dgs_A 16 GGIPHNCGETE--LREYF-KKFGVVT 38 (99)
T ss_dssp ESCCSSCCHHH--HHHHH-SSSSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8899863
No 268
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.93 E-value=0.036 Score=39.90 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.|.
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~G~i~ 43 (111)
T 1x4h_A 21 RNLSFDSEEEA--LGEVL-QQFGDLK 43 (111)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred ECCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 269
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.92 E-value=0.044 Score=38.74 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 23 ~nlp~~~t~~~--l~~~F-~~~G~i~ 45 (100)
T 2do4_A 23 SGLPFSCTKEE--LEEIC-KAHGTVK 45 (100)
T ss_dssp ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhCCCeE
Confidence 99999999999 99999 8999763
No 270
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.89 E-value=0.094 Score=38.12 Aligned_cols=31 Identities=10% Similarity=0.291 Sum_probs=27.2
Q ss_pred hHHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 210 GAEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 210 ~~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
....+|++ .||++.+++++ |+++| ..||.|+
T Consensus 25 ~~~~~l~V--------------~nLp~~~te~~--l~~~F-~~~G~i~ 55 (116)
T 1x4b_A 25 EQFRKLFI--------------GGLSFETTEES--LRNYY-EQWGKLT 55 (116)
T ss_dssp HHHTEEEE--------------ECCTTCCCHHH--HHHHH-TSSCCCS
T ss_pred CCCCEEEE--------------eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 34577999 99999999999 99999 9999874
No 271
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.87 E-value=0.038 Score=39.45 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.|+
T Consensus 22 ~nlp~~~t~~~--l~~~F-~~~G~v~ 44 (105)
T 2dh8_A 22 GGLDWSTTQET--LRSYF-SQYGEVV 44 (105)
T ss_dssp BSCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8899863
No 272
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=90.87 E-value=0.052 Score=37.68 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=19.5
Q ss_pred cccchhhhhHHHHHHHHhcCCcc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG 254 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g 254 (258)
+||++.+++++ |+++| +.||
T Consensus 7 ~nL~~~~t~~~--l~~~F-~~~G 26 (90)
T 3p5t_L 7 GNLTWWTTDED--LTEAV-HSLG 26 (90)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTT
T ss_pred eCCCCCCCHHH--HHHHH-HHhC
Confidence 99999999999 99999 9999
No 273
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=90.86 E-value=0.039 Score=38.53 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.4
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ .||++.+++++ |+++| ..||.+.
T Consensus 15 ~~~~l~v--------------~nlp~~~~~~~--l~~~F-~~~G~i~ 44 (95)
T 2ywk_A 15 ADRTVFV--------------GNLEARVREEI--LYELF-LQAGPLT 44 (95)
T ss_dssp GGGEEEE--------------ECCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred CCCEEEE--------------ECCCCCCCHHH--HHHHH-HhcCCEE
Confidence 3567999 99999999999 99999 8899863
No 274
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.84 E-value=0.038 Score=39.32 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (103)
T 2cqg_A 21 LGLPWKTTEQD--LKEYF-STFGEVL 43 (103)
T ss_dssp ESCCSSCCHHH--HHHHH-GGGSCEE
T ss_pred EcCCCcCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 275
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.79 E-value=0.055 Score=37.68 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=26.4
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ .||++.+++++ |+++| ..||.+.
T Consensus 14 ~~~~l~v--------------~nlp~~~t~~~--l~~~f-~~~G~v~ 43 (95)
T 2cqc_A 14 PNCCLGV--------------FGLSLYTTERD--LREVF-SKYGPIA 43 (95)
T ss_dssp GGGCEEE--------------ESCCSSCCHHH--HHHHH-HTTSCEE
T ss_pred CCCEEEE--------------ECCCCCCCHHH--HHHHH-HhcCCee
Confidence 3567999 99999999999 99999 8899763
No 276
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.78 E-value=0.041 Score=39.14 Aligned_cols=23 Identities=13% Similarity=0.582 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 21 ~nlp~~~t~~~--l~~~f-~~~G~v~ 43 (103)
T 2cq3_A 21 SNIPFRFRDPD--LRQMF-GQFGKIL 43 (103)
T ss_dssp ESCCTTCCHHH--HHHHG-GGTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999873
No 277
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=90.78 E-value=0.043 Score=38.72 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.8
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.++|++ |++|| .+||+|+
T Consensus 13 gNL~~~~te~~--L~~lF-~q~G~V~ 35 (89)
T 2wbr_A 13 KNLTAQIDGPT--LRTLC-MQHGPLV 35 (89)
T ss_dssp ECCCTTCCCHH--HHHHH-HHHSCEE
T ss_pred eCCCccCCHHH--HHHHH-HhhCCEE
Confidence 99999999999 99999 9999874
No 278
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.76 E-value=0.65 Score=43.06 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=45.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhC
Q 025055 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (258)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~ 122 (258)
...++|+ +|..+...+|.++|+.||. ..|+++.+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3566666 9999999999999999995 456666542 79999999999999999885
No 279
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.76 E-value=0.043 Score=38.86 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 212 EERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 212 ~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
..+|++ +||++.+++++ |+++| ..||.|.
T Consensus 15 ~~~l~V--------------~nLp~~~t~~~--l~~~F-~~~g~v~ 43 (101)
T 2fc9_A 15 SKTLVL--------------SNLSYSATEET--LQEVF-EKATFIK 43 (101)
T ss_dssp CSEEEE--------------ESCCTTCCHHH--HHHHC-SSCSEEE
T ss_pred CCEEEE--------------eCCCCCCCHHH--HHHHH-HhCCEEE
Confidence 466999 99999999999 99999 8899763
No 280
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.70 E-value=0.047 Score=38.67 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 18 ~nLp~~~t~~~--l~~~f-~~~G~i~ 40 (102)
T 2cqb_A 18 GGLAEEVDDKV--LHAAF-IPFGDIT 40 (102)
T ss_dssp ESCCSSCCHHH--HHHHH-TTTSCCC
T ss_pred eCCCCCCCHHH--HHHHh-hccCCEE
Confidence 99999999999 99999 8899874
No 281
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.69 E-value=0.045 Score=38.93 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 19 ~nLp~~~t~~~--l~~~f-~~~G~i~ 41 (103)
T 2dnm_A 19 DNLTYRTSPDS--LRRVF-EKYGRVG 41 (103)
T ss_dssp ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999863
No 282
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=90.68 E-value=0.048 Score=38.04 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (95)
T 2ek1_A 21 QNMPFTVSIDE--ILDFF-YGYQVIP 43 (95)
T ss_dssp ECCCTTCCHHH--HHHHT-TTSCBCT
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCcc
Confidence 99999999999 99999 9999864
No 283
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=90.66 E-value=0.046 Score=38.47 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=21.4
Q ss_pred cccch-hhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTI-WIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~-~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++ .+++++ |+++| ..||.++
T Consensus 16 ~nlp~~~~t~~~--l~~~F-~~~G~v~ 39 (96)
T 2kvi_A 16 GNLPLKNVSKED--LFRIF-SPYGHIM 39 (96)
T ss_dssp ESSTTSCCCHHH--HHHHH-TTTCCCC
T ss_pred eCCCcccCCHHH--HHHHH-HhcCCEE
Confidence 99999 999999 99999 8999864
No 284
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.66 E-value=0.045 Score=38.18 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 11 ~nlp~~~t~~~--l~~~f-~~~G~v~ 33 (95)
T 2dnz_A 11 GSLHFNITEDM--LRGIF-EPFGKID 33 (95)
T ss_dssp ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEe
Confidence 99999999999 99999 8999864
No 285
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.59 E-value=0.054 Score=38.82 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=19.8
Q ss_pred cccchhhhhHHHHHHHHhcCCccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGT 255 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~ 255 (258)
+||++.++|++ |+++| ..||.
T Consensus 21 ~nLp~~~te~~--l~~~F-~~~G~ 41 (102)
T 1wez_A 21 RGLPYRATEND--IYNFF-SPLNP 41 (102)
T ss_dssp ESCCTTCCHHH--HHHSS-CSCCC
T ss_pred eCCCCCCCHHH--HHHHH-HHcCc
Confidence 99999999999 99999 88993
No 286
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.58 E-value=0.051 Score=39.35 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=21.8
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~G~i~ 43 (113)
T 2cpe_A 21 QGLNDSVTLDD--LADFF-KQCGVVK 43 (113)
T ss_dssp ECCCTTCCHHH--HHHHH-TTTSCBC
T ss_pred cCCCCCCCHHH--HHHHH-HhcCCEe
Confidence 99999999999 99999 9999875
No 287
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.57 E-value=0.034 Score=39.24 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 15 ~nLp~~~t~~~--l~~~F-~~~G~i~ 37 (99)
T 2div_A 15 GDLEPYMDENF--ISRAF-ATMGETV 37 (99)
T ss_dssp CSCCTTCCHHH--HHHHH-HHTTCCC
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCcc
Confidence 99999999999 99999 8999865
No 288
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=90.52 E-value=0.027 Score=41.37 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=20.4
Q ss_pred cccchhhhhHHHHHHHHhcCCcc-cc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG-TF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g-~~ 256 (258)
+||++.+++++ |+++| ..|| .+
T Consensus 34 gnLp~~~te~d--L~~~F-~~~G~~v 56 (111)
T 2jvr_A 34 KNLPEGCSWQD--LKDLA-RENSLET 56 (111)
T ss_dssp ECSSCCCCHHH--HHHHH-HHHTCCC
T ss_pred ECCCCCCCHHH--HHHHH-HHhCCee
Confidence 99999999999 99999 8999 44
No 289
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=90.49 E-value=0.048 Score=38.88 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~G~i~ 43 (105)
T 2dnh_A 21 GMLNKQQSEED--VLRLF-QPFGVID 43 (105)
T ss_dssp ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 290
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=90.39 E-value=0.041 Score=38.16 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 14 ~nlp~~~t~~~--l~~~f-~~~G~v~ 36 (92)
T 2dgv_A 14 RNLPFDFTWKM--LKDKF-NECGHVL 36 (92)
T ss_dssp CSCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8899763
No 291
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=90.37 E-value=0.041 Score=37.72 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 10 ~nlp~~~t~~~--l~~~F-~~~G~i~ 32 (88)
T 4a8x_A 10 GRLTRNVTKDH--IMEIF-STYGKIK 32 (88)
T ss_dssp ECCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhCCCEE
Confidence 99999999999 99999 8999863
No 292
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.37 E-value=0.053 Score=38.28 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (99)
T 2cpj_A 21 GNLPPDITEEE--MRKLF-EKYGKAG 43 (99)
T ss_dssp ESCCTTCCHHH--HHHHT-STTCCCS
T ss_pred eCCCCCCCHHH--HHHHH-hhcCCeE
Confidence 99999999999 99999 9999764
No 293
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.32 E-value=0.039 Score=38.24 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 14 ~nlp~~~t~~~--l~~~F-~~~G~i~ 36 (90)
T 2dnq_A 14 GNLPREATEQE--IRSLF-EQYGKVL 36 (90)
T ss_dssp ESCCSSCCHHH--HHHHH-HTSSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhCCCEE
Confidence 99999999999 99999 8999863
No 294
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.31 E-value=0.038 Score=37.78 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 11 ~nlp~~~t~~~--l~~~f-~~~G~i~ 33 (85)
T 1x4e_A 11 RGLQPGTTDQD--LVKLC-QPYGKIV 33 (85)
T ss_dssp ESCCTTCCHHH--HHTTS-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 295
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=90.22 E-value=0.043 Score=39.76 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=25.6
Q ss_pred HHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 212 EERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 212 ~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
..+|++ +||++.+++++ |+++| ..||.+.
T Consensus 25 ~~~lfV--------------~nLp~~~te~~--L~~~F-~~~G~i~ 53 (109)
T 2rs2_A 25 GCKMFI--------------GGLSWQTTQEG--LREYF-GQFGEVK 53 (109)
T ss_dssp -CCEEE--------------ESCCTTCCHHH--HHHHH-TTTSCEE
T ss_pred CCEEEE--------------eCCCCCCCHHH--HHHHH-HccCCeE
Confidence 567999 99999999999 99999 8999863
No 296
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=90.20 E-value=0.047 Score=37.38 Aligned_cols=23 Identities=13% Similarity=0.253 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 12 ~nlp~~~t~~~--l~~~F-~~~G~i~ 34 (87)
T 3bs9_A 12 GDLSPEITTAA--IAAAF-APFGRIS 34 (87)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEe
Confidence 99999999999 99999 8999763
No 297
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.17 E-value=0.029 Score=39.34 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~v~ 43 (96)
T 2e44_A 21 RNIPPHLQWEV--LDSLL-VQYGVVE 43 (96)
T ss_dssp EEECSSSCHHH--HHHHH-HHHSCEE
T ss_pred EcCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999763
No 298
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.16 E-value=0.044 Score=38.64 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 14 ~nlp~~~t~~~--l~~~F-~~~G~i~ 36 (99)
T 1whw_A 14 RNLSYTSSEED--LEKLF-SAYGPLS 36 (99)
T ss_dssp ECCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEe
Confidence 99999999999 99999 8999763
No 299
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.14 E-value=0.033 Score=38.66 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 15 ~nlp~~~t~~~--l~~~F-~~~G~v~ 37 (90)
T 2dnp_A 15 GNVSAACTSQE--LRSLF-ERRGRVI 37 (90)
T ss_dssp ESCCTTCCHHH--HHHHH-HHHSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HcCCCEE
Confidence 99999999999 99999 8899763
No 300
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=90.08 E-value=0.034 Score=39.69 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.|+
T Consensus 17 ~nl~~~~t~~~--l~~~F-~~~G~i~ 39 (103)
T 2dgu_A 17 RNLANTVTEEI--LEKAF-SQFGKLE 39 (103)
T ss_dssp ECCCTTCCHHH--HHHHH-HHHSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8899864
No 301
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=90.07 E-value=0.063 Score=41.02 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=19.4
Q ss_pred cccchhhhhHHHHHHHHhcCCcc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG 254 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g 254 (258)
+||++.++|++ |+++| ..||
T Consensus 52 ~nLp~~~te~d--L~~~F-~~~G 71 (139)
T 2hgn_A 52 RGLPYKATEND--IYNFF-SPLN 71 (139)
T ss_dssp CSCCTTCCHHH--HHHHH-CSCC
T ss_pred eCCCCCCCHHH--HHHHH-HhcC
Confidence 99999999999 99999 8899
No 302
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.02 E-value=0.049 Score=37.14 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||+..+++++ |+++| ..||.+.
T Consensus 18 ~~l~~~~t~~~--l~~~f-~~~G~i~ 40 (85)
T 2ytc_A 18 GGLGDTITETD--LRNHF-YQFGEIR 40 (85)
T ss_dssp ECCTTTSCHHH--HHHHH-HTTSCEE
T ss_pred cCCCCCCCHHH--HHHHH-HhCCCEe
Confidence 99999999999 99999 8999763
No 303
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=90.00 E-value=0.059 Score=37.68 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.3
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ +||++.+++++ |+++| ..||.+.
T Consensus 15 ~~~~l~V--------------~nL~~~~t~~~--l~~~F-~~~g~v~ 44 (96)
T 1fjc_A 15 AARTLLA--------------KNLSFNITEDE--LKEVF-EDALEIR 44 (96)
T ss_dssp GGGEEEE--------------ESCCSSCCHHH--HHHHH-CSEEEEC
T ss_pred CCCEEEE--------------eCCCCCCCHHH--HHHHH-hhCCcEE
Confidence 3567999 99999999999 99999 8888764
No 304
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=89.98 E-value=0.06 Score=38.97 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 37 ~nLp~~~t~~~--L~~~F-~~~G~i~ 59 (108)
T 2jvo_A 37 RPFPLDVQESE--LNEIF-GPFGPMK 59 (108)
T ss_dssp CSSCTTCCHHH--HHHHH-TTTSCCC
T ss_pred ECCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 9999864
No 305
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=89.98 E-value=0.054 Score=39.55 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 46 ~nlp~~~t~~~--l~~~F-~~~G~i~ 68 (118)
T 2khc_A 46 YHLPQEFTDTD--LASTF-LPFGNVI 68 (118)
T ss_dssp ECSCTTCCHHH--HHHHT-TTSCEEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999863
No 306
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=89.91 E-value=0.051 Score=41.23 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 51 ~nLp~~~te~~--L~~~F-~~~G~i~ 73 (143)
T 3egn_A 51 KNLAKHVQEKD--LKYIF-GRYVDFS 73 (143)
T ss_dssp EEECTTCCHHH--HHHHH-GGGCCTT
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCcc
Confidence 99999999999 99999 8999763
No 307
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.90 E-value=0.052 Score=37.96 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 11 ~nLp~~~t~~~--l~~~F-~~~G~i~ 33 (96)
T 1x5t_A 11 GNLDPEIDEKL--LYDTF-SAFGVIL 33 (96)
T ss_dssp ECCCTTCCHHH--HHHHH-HTTSCBS
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCee
Confidence 99999999999 99999 8999863
No 308
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.051 Score=38.49 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 33 ~nlp~~~~~~~--l~~~f-~~~G~i~ 55 (101)
T 2la4_A 33 GNIPHFATEAD--LIPLF-QNFGFIL 55 (101)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCCS
T ss_pred cCCCcccCHHH--HHHHH-HhCCCEE
Confidence 99999999999 99999 8999864
No 309
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.70 E-value=0.05 Score=38.77 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (105)
T 1x5u_A 21 GGLDEKVSEPL--LWELF-LQAGPVV 43 (105)
T ss_dssp ECCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 310
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=89.62 E-value=0.055 Score=38.36 Aligned_cols=23 Identities=9% Similarity=0.401 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 15 ~nLp~~~t~~~--l~~~F-~~~G~i~ 37 (102)
T 2xs2_A 15 GGIDVRMDETE--IRSFF-ARYGSVK 37 (102)
T ss_dssp ECCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhCCCeE
Confidence 99999999999 99999 8999863
No 311
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=89.61 E-value=0.077 Score=36.07 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 13 ~nl~~~~~~~~--l~~~f-~~~G~i~ 35 (85)
T 3mdf_A 13 GGLAEEVDDKV--LHAAF-IPFGDIT 35 (85)
T ss_dssp ECCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred ECCCCCCCHHH--HHHHH-hccCCEE
Confidence 99999999999 99999 8999763
No 312
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.59 E-value=0.06 Score=38.23 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=26.3
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ +||++.+++++ |+++| ..||.+.
T Consensus 7 ~~~~l~V--------------~nlp~~~~~~~--l~~~f-~~~G~i~ 36 (104)
T 1p1t_A 7 SLRSVFV--------------GNIPYEATEEQ--LKDIF-SEVGPVV 36 (104)
T ss_dssp HHSCEEE--------------ESCCTTSCHHH--HHHHH-HTTSCCS
T ss_pred CccEEEE--------------eCCCCcCCHHH--HHHHH-HhcCCee
Confidence 4567889 99999999999 99999 8999863
No 313
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.50 E-value=0.053 Score=38.13 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 23 ~nlp~~~t~~~--l~~~F-~~~G~v~ 45 (97)
T 1why_A 23 GGLGPNTSLAA--LAREF-DRFGSIR 45 (97)
T ss_dssp ECCCSSCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCee
Confidence 99999999999 99999 8999863
No 314
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.43 E-value=0.046 Score=38.52 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=21.1
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
.||++.+++++ |+++| ..||.+
T Consensus 25 ~nL~~~~t~~~--l~~~F-~~~G~v 46 (97)
T 2e5j_A 25 GNLPRDARVSD--LKRAL-RELGSV 46 (97)
T ss_dssp ECCCTTCCHHH--HHHHH-HHTTCC
T ss_pred eCCCCcCcHHH--HHHHH-HhcCCE
Confidence 99999999999 99999 899987
No 315
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=89.37 E-value=0.06 Score=38.85 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.4
Q ss_pred cccchh-hhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIW-IISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~-~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++. +++++ |+++| ..||.+.
T Consensus 33 ~nl~~~~~t~~~--l~~~F-~~~G~v~ 56 (110)
T 1wf1_A 33 GNLNTALVKKSD--VETIF-SKYGRVA 56 (110)
T ss_dssp CSCCCSSCCHHH--HHHHH-GGGSCCS
T ss_pred eCCCcccCCHHH--HHHHH-HhCCCeE
Confidence 999999 99999 99999 8999864
No 316
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.36 E-value=0.06 Score=38.35 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=19.3
Q ss_pred cccchhhhhHHHHHHHHhcCCcc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG 254 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g 254 (258)
+||++.+++++ |+++| ..||
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G 40 (104)
T 1wi8_A 21 GNLPYDVTEES--IKEFF-RGLN 40 (104)
T ss_dssp ESCCSSCCHHH--HHHHT-TTSC
T ss_pred eCCCCcCCHHH--HHHHH-HHCC
Confidence 99999999999 99999 8889
No 317
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.27 E-value=0.098 Score=38.07 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=20.9
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+++++ |+++| ..||.+
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~g~v 42 (114)
T 2cpy_A 21 TNIPFSITKMD--VLQFL-EGIPVD 42 (114)
T ss_dssp ESCCTTSCHHH--HHHHT-TTSCCC
T ss_pred eCcCCcCCHHH--HHHHH-HhCCCc
Confidence 99999999999 99999 888987
No 318
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.26 E-value=0.069 Score=38.61 Aligned_cols=23 Identities=13% Similarity=0.582 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.++
T Consensus 35 ~nLp~~~te~~--l~~~F-~~~G~i~ 57 (109)
T 2err_A 35 SNIPFRFRDPD--LRQMF-GQFGKIL 57 (109)
T ss_dssp ESCCTTCCHHH--HHHHG-GGTCCCS
T ss_pred ECCCCcCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999874
No 319
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=89.22 E-value=0.062 Score=39.00 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.|+
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (115)
T 2dgo_A 21 GDLSPEITTED--IKAAF-APFGRIS 43 (115)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 320
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=89.20 E-value=0.043 Score=39.19 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 19 ~nlp~~~t~~~--l~~~F-~~~G~i~ 41 (106)
T 2dgp_A 19 GQIPRNLDEKD--LKPLF-EEFGKIY 41 (106)
T ss_dssp ESCCTTCCHHH--HHHHH-HHHSCCC
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCee
Confidence 99999999999 99999 8999763
No 321
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.13 E-value=0.073 Score=37.77 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 21 ~nlp~~~t~~~--l~~~f-~~~G~i~ 43 (103)
T 2cq0_A 21 TNLSEDTRETD--LQELF-RPFGSIS 43 (103)
T ss_dssp ESCCTTCCHHH--HHTTS-TTTCCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhCCCeE
Confidence 99999999999 99999 8999864
No 322
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.09 E-value=0.044 Score=38.82 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 18 ~nLp~~~t~~~--l~~~f-~~~G~i~ 40 (102)
T 1x5s_A 18 GGLSFDTNEQS--LEQVF-SKYGQIS 40 (102)
T ss_dssp ESCCTTCCHHH--HHHHH-HHHSCCC
T ss_pred ECCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999863
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.99 E-value=0.06 Score=37.98 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.2
Q ss_pred cccchhhhhHHHHHHHHhcCCc--ccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDY--GTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~--g~~ 256 (258)
+||++.+++++ |+++| ..| |.+
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~g~g~v 44 (99)
T 2cpd_A 21 RNLMLSTSEEM--IEKEF-NNIKPGAV 44 (99)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSTTCE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCcce
Confidence 99999999999 99999 888 655
No 324
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.96 E-value=0.043 Score=39.02 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.|.
T Consensus 21 ~nlp~~~t~~~--l~~~F-~~~G~i~ 43 (103)
T 2cqi_A 21 GNLSRDVTEVL--ILQLF-SQIGPCK 43 (103)
T ss_dssp ESCCTTCCHHH--HHHHH-HHHSCEE
T ss_pred eCCCccCCHHH--HHHHH-HhcCCEe
Confidence 99999999999 99999 9999863
No 325
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=88.96 E-value=0.1 Score=36.69 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 19 ~nLp~~~t~~~--l~~~F-~~~G~i~ 41 (99)
T 2la6_A 19 QGLGENVTIES--VADYF-KQIGIIK 41 (99)
T ss_dssp ECCCSSCCHHH--HHHHH-TTTSCBC
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCEe
Confidence 99999999999 99999 8999864
No 326
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=88.92 E-value=0.085 Score=37.66 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 35 ~nlp~~~t~~~--l~~~F-~~~G~i~ 57 (107)
T 3ulh_A 35 SNLDFGVSDAD--IQELF-AEFGTLK 57 (107)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999873
No 327
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.88 E-value=0.096 Score=39.22 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| +.||.|+
T Consensus 31 ~NL~~~vt~~~--L~~~F-s~yG~V~ 53 (124)
T 2e5i_A 31 QNPLYPITVDV--LYTVC-NPVGKVQ 53 (124)
T ss_dssp ESCCSCCCHHH--HHHHH-TTTSCEE
T ss_pred cCcCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 9999874
No 328
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.87 E-value=0.055 Score=38.48 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.8
Q ss_pred cccchhhhhHHHHHHHHhcCC-ccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGD-YGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~-~g~~~ 257 (258)
.||++.+++++ |+++| .. ||.++
T Consensus 15 ~nLp~~~t~~~--l~~~F-~~~~G~v~ 38 (104)
T 2dhg_A 15 GDLTPDVDDGM--LYEFF-VKVYPSCR 38 (104)
T ss_dssp ECCCTTCCHHH--HHHHH-HHHCTTEE
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCCeE
Confidence 99999999999 99999 66 99763
No 329
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=88.80 E-value=0.087 Score=38.85 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.|.
T Consensus 28 ~nlp~~~t~~~--l~~~F-~~~G~i~ 50 (126)
T 3ex7_B 28 TGVHEEATEED--IHDKF-AEYGEIK 50 (126)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999864
No 330
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=88.78 E-value=0.064 Score=37.93 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=21.3
Q ss_pred cccch-hhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTI-WIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~-~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++ .+++++ |+++| +.||.+.
T Consensus 28 ~nLp~~~~t~~~--L~~~F-~~~G~v~ 51 (97)
T 2xnq_A 28 GNLPLKNVSKED--LFRIF-SPYGHIM 51 (97)
T ss_dssp ESCCSSCCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCcccCCHHH--HHHHH-HhcCCEE
Confidence 99999 999999 99999 8899864
No 331
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=88.72 E-value=0.12 Score=37.98 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=20.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGT 255 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~ 255 (258)
+||++.+++++ |+++| ..||.
T Consensus 23 ~nLp~~~te~~--l~~~F-~~~G~ 43 (118)
T 2db1_A 23 RGLPWSCSIED--VQNFL-SDCTI 43 (118)
T ss_dssp ESCCTTCCHHH--HHHHT-TTSCB
T ss_pred eCCCCCCCHHH--HHHHH-HHcCC
Confidence 99999999999 99999 88997
No 332
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=88.61 E-value=0.063 Score=39.51 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
...+|++ +||++.+++++ |+++| ..||.++
T Consensus 35 ~~~~l~V--------------~nlp~~~t~~~--l~~~F-~~~G~i~ 64 (124)
T 2jwn_A 35 DKRSVYV--------------GNVDYGSTAQD--LEAHF-SSCGSIN 64 (124)
T ss_dssp HHTEEEE--------------EEECTTCCHHH--HHHHH-HTTSCEE
T ss_pred CCCEEEE--------------eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 3567999 99999999999 99999 8999763
No 333
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=88.55 E-value=0.077 Score=38.35 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 32 ~nLp~~~te~~--l~~~F-~~~G~i~ 54 (108)
T 2jrs_A 32 GSLHFNITEDM--LRGIF-EPFGRIE 54 (108)
T ss_dssp ECCCSSCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 9999863
No 334
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=88.34 E-value=0.094 Score=39.29 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.++
T Consensus 52 ~nLp~~~te~~--L~~~F-~~~G~I~ 74 (129)
T 2kxn_B 52 FGLSLYTTERD--LREVF-SKYGPIA 74 (129)
T ss_dssp ETCTTSCCHHH--HHHHH-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999864
No 335
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.19 E-value=0.081 Score=38.30 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.+.
T Consensus 31 ~nlp~~~t~~~--l~~~F-~~~G~i~ 53 (114)
T 1x5o_A 31 SNLPLSMDEQE--LENML-KPFGQVI 53 (114)
T ss_dssp ESCCTTCCHHH--HHHTT-TTTSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999763
No 336
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=88.18 E-value=0.11 Score=36.98 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 29 ~nlp~~~t~~~--l~~~f-~~~G~i~ 51 (106)
T 1p27_B 29 TGVHEEATEED--IHDKF-AEYGEIK 51 (106)
T ss_dssp ECCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-hccCCeE
Confidence 99999999999 99999 9999863
No 337
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=88.01 E-value=0.085 Score=37.93 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=20.1
Q ss_pred cccchhhhhHHHHHHHHhcCCccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGT 255 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~ 255 (258)
+||++.+++++ |+++| ..||.
T Consensus 17 ~nLp~~~te~~--l~~~F-~~~g~ 37 (107)
T 2lmi_A 17 QGLPWSCTMED--VLNFF-SDCRI 37 (107)
T ss_dssp ECCCSSCCSHH--HHHHT-TTSCB
T ss_pred eCCCCCCCHHH--HHHHH-HhcCC
Confidence 99999999999 99999 88887
No 338
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=87.93 E-value=0.063 Score=38.08 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=19.4
Q ss_pred cccchhhhhHHHHHHHHhcCCcc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG 254 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g 254 (258)
+||++.+++++ |+++| +.||
T Consensus 25 ~nLp~~~t~~~--l~~~F-~~~G 44 (100)
T 2j76_E 25 GNLPYDVTEES--IKEFF-RGLN 44 (100)
T ss_dssp SCCSSCCSSSH--HHHHS-CSSC
T ss_pred eCCCCCCCHHH--HHHHH-HhcC
Confidence 99999999999 99999 8899
No 339
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=87.40 E-value=0.089 Score=38.79 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 41 ~nlp~~~t~~~--l~~~F-~~~G~v~ 63 (124)
T 2kt5_A 41 SNLDFGVSDAD--IQELF-AEFGTLK 63 (124)
T ss_dssp ESCCSSCCHHH--HHHHH-HTTSCCS
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCee
Confidence 99999999999 99999 8899763
No 340
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.24 E-value=0.083 Score=38.25 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHH---HHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMK---ELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k---~~~~~~~g~~~ 257 (258)
.||++.+++++ |+ ++| ..||.++
T Consensus 21 ~nLp~~~~~~~--l~~~~~~F-~~~G~i~ 46 (111)
T 2cpi_A 21 VGLSQRLADPE--VLKRPEYF-GKFGKIH 46 (111)
T ss_dssp EEECTTTCCHH--HHHSTTTT-TTTSCEE
T ss_pred ECCCCCCCHHH--HHHHHHHh-hccCCEE
Confidence 99999999999 99 999 9999874
No 341
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=87.23 E-value=0.36 Score=25.59 Aligned_cols=20 Identities=30% Similarity=1.037 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025055 155 SRCYECGDEGHLSYECPRNQ 174 (258)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~~~ 174 (258)
..||.||..||++++|+...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 45999999999999999654
No 342
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=87.22 E-value=0.14 Score=36.80 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 32 ~nlp~~~t~~~--l~~~F-~~~G~i~ 54 (110)
T 1oo0_B 32 TSIHEEAQEDE--IQEKF-CDYGEIK 54 (110)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999763
No 343
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.20 E-value=0.066 Score=37.67 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=21.0
Q ss_pred cccchhhhhHHHHHH----HHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMK----ELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k----~~~~~~~g~~~ 257 (258)
.||++.+++++ |+ ++| ..||.+.
T Consensus 15 ~nL~~~~~~~~--l~~~l~~~F-~~~G~v~ 41 (96)
T 2dgx_A 15 SNIDYRLSRKE--LQQLLQEAF-ARHGKVK 41 (96)
T ss_dssp ESCCTTSCHHH--HHHHHHHHH-HHHSCEE
T ss_pred ECCCCCCCHHH--HHHHHHHhc-cccCcEE
Confidence 99999999999 99 999 8999763
No 344
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.17 E-value=0.061 Score=38.73 Aligned_cols=23 Identities=9% Similarity=0.348 Sum_probs=21.3
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.++
T Consensus 31 ~nl~~~~t~~~--l~~~F-~~~G~i~ 53 (109)
T 1x4g_A 31 GGIASGLTDQL--MRQTF-SPFGQIM 53 (109)
T ss_dssp ECCSSCCCHHH--HHHHH-HHHSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 8999864
No 345
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=87.08 E-value=0.065 Score=42.23 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.6
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| +.||.|+
T Consensus 52 gNL~~~vted~--L~~~F-s~fG~V~ 74 (164)
T 1sjr_A 52 ENLFYPVTLDV--LHQIF-SKFGTVL 74 (164)
T ss_dssp CSCCSCCCHHH--HHHHH-HHHSCEE
T ss_pred eCcCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 9999874
No 346
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=87.04 E-value=0.16 Score=38.50 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=20.8
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+|+++ |+++| ..||.+
T Consensus 50 gnLp~~~te~d--L~~~F-~~~G~v 71 (136)
T 2hgl_A 50 RGLPWSCSVED--VQNFL-SDCTIH 71 (136)
T ss_dssp ESCCTTCCHHH--HHHHT-TTCCCS
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCc
Confidence 99999999999 99999 889983
No 347
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.98 E-value=0.047 Score=38.67 Aligned_cols=22 Identities=14% Similarity=-0.025 Sum_probs=20.6
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+++++ |+++| ..||.+
T Consensus 23 ~nLp~~~t~~~--l~~~F-~~~G~v 44 (101)
T 1fj7_A 23 GNLNPNKSVAE--LKVAI-SELFAK 44 (101)
T ss_dssp ECCCTTSCHHH--HHHHH-HHHHHH
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCc
Confidence 99999999999 99999 888875
No 348
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=86.79 E-value=0.1 Score=35.34 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=19.6
Q ss_pred cccchhh------hhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWI------ISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~------~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+ ++++ |+++| +.||.+.
T Consensus 7 ~nLp~~~~~~~~~t~~~--l~~~F-~~~G~i~ 35 (81)
T 2krb_A 7 DNVPQVGPDRLEKLKNV--IHKIF-SKFGKIT 35 (81)
T ss_dssp ESCCCCCTTTHHHHHHH--HHHHH-HTTCCEE
T ss_pred eCCCCCcHHHHHHHHHH--HHHHH-hhcCCeE
Confidence 8999999 5566 99999 8999863
No 349
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=86.79 E-value=0.045 Score=37.82 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 7 ~nLp~~~t~~~--l~~~F-~~~G~i~ 29 (90)
T 2ki2_A 7 GNLVYSATSEQ--VKELF-SQFGKVF 29 (90)
T ss_dssp EEECTTSSHHH--HTTTH-HHHTCCS
T ss_pred CCCCCCCCHHH--HHHHH-HhcCCEE
Confidence 89999999999 99999 8899863
No 350
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.77 E-value=0.072 Score=38.18 Aligned_cols=21 Identities=5% Similarity=-0.004 Sum_probs=20.1
Q ss_pred cccchhhhhHHHHHHHHhcCCccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGT 255 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~ 255 (258)
.||++.+++++ |+++| ..||.
T Consensus 14 ~nLp~~~t~~~--l~~~f-~~~G~ 34 (109)
T 2dis_A 14 GGIPKMKKREE--ILEEI-AKVTE 34 (109)
T ss_dssp ECCCTTSCHHH--HHHHH-HHHST
T ss_pred eCCCCcCCHHH--HHHHH-HHhcC
Confidence 99999999999 99999 88987
No 351
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=86.62 E-value=0.15 Score=39.64 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++.+ |+++| ..||.|+
T Consensus 78 ~nLp~~~t~~~--L~~~F-~~~G~i~ 100 (165)
T 1rk8_A 78 TSIHEEAQEDE--IQEKF-CDYGEIK 100 (165)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHh-hcCCCEE
Confidence 99999999999 99999 9999874
No 352
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=86.52 E-value=0.12 Score=36.59 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.7
Q ss_pred cccchhhhhHHHHHHHHhcCCcc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG 254 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g 254 (258)
+||++.+++++ |+++| ..||
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~g 40 (103)
T 2dng_A 21 GNLPFNTVQGD--IDAIF-KDLS 40 (103)
T ss_dssp ESCCTTCCHHH--HHHHT-TTSC
T ss_pred eCCCCCCCHHH--HHHHH-HhCC
Confidence 99999999999 99999 6777
No 353
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=86.33 E-value=0.16 Score=38.97 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+++++ |+++| ..||.|+
T Consensus 45 ~nlp~~~t~~~--l~~~F-~~~G~i~ 67 (156)
T 1h2v_Z 45 GNLSFYTTEEQ--IYELF-SKSGDIK 67 (156)
T ss_dssp ESCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 99999999999 99999 9999864
No 354
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=85.97 E-value=0.13 Score=39.87 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=19.6
Q ss_pred cccchhhhhHHHHHHHHhcCCcc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG 254 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g 254 (258)
+||++.+++++ |+++| ..||
T Consensus 61 gnLp~~~te~~--L~~~F-~~~G 80 (156)
T 3n9u_C 61 GSFSWWTTDQQ--LIQVI-RSIG 80 (156)
T ss_dssp ECCCTTCCHHH--HHHHH-HHTT
T ss_pred eCCCCCCCHHH--HHHHH-HHHC
Confidence 99999999999 99999 9999
No 355
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=85.74 E-value=0.12 Score=42.67 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.8
Q ss_pred cccchhhhhHHHHHHHHhcCCcc--cc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYG--TF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g--~~ 256 (258)
+||++.+++++ |+++| ..|| .|
T Consensus 74 gnL~~~~te~~--L~~~F-~~~G~~~v 97 (229)
T 3q2s_C 74 GNLTWWTTDED--LTEAV-HSLGVNDI 97 (229)
T ss_dssp ESCCTTCCHHH--HHHHH-HTTTCCCE
T ss_pred eCCCCCCCHHH--HHHHH-HHHCCcce
Confidence 99999999999 99999 9999 55
No 356
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.37 E-value=0.12 Score=37.39 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=21.0
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+||++.+++++ |+++| ..||.+
T Consensus 31 ~nLp~~~t~~~--l~~~f-~~~G~v 52 (115)
T 2cpx_A 31 KNLSPRVTERD--LVSLF-ARFQEK 52 (115)
T ss_dssp ECCCTTCCHHH--HHHHT-HHHHHS
T ss_pred eCCCCCCCHHH--HHHHH-HHhCCc
Confidence 99999999999 99999 899986
No 357
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=85.29 E-value=0.21 Score=37.44 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=18.9
Q ss_pred cccchhhhhHHHHHHHHhcCCccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGT 255 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~ 255 (258)
+||++.|+|++ |+++| ..|+.
T Consensus 48 gnLp~~~te~d--L~~~F-~~~~i 68 (126)
T 2hgm_A 48 RGLPFGCTKEE--IVQFF-SGLEI 68 (126)
T ss_dssp ECCCTTCCHHH--HHHHT-TTSCE
T ss_pred eCCCCCCCHHH--HHHHH-hcCCc
Confidence 99999999999 99999 66753
No 358
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=85.27 E-value=0.15 Score=35.62 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred cccchhhhhHHHHHH----HHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMK----ELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k----~~~~~~~g~~~ 257 (258)
+||++.+++++ |+ ++| +.||.+.
T Consensus 14 ~nLp~~~~~~~--l~~~l~~~f-~~~G~i~ 40 (97)
T 1nu4_A 14 NNLNEKIKKDE--LKKSLHAIF-SRFGQIL 40 (97)
T ss_dssp ESCCTTSCHHH--HHHHHHHHH-GGGSCEE
T ss_pred eCCCCCCCHHH--HHHHHHHHH-HhCCCEE
Confidence 99999999999 99 999 8999763
No 359
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.96 E-value=2.4 Score=28.15 Aligned_cols=68 Identities=9% Similarity=0.310 Sum_probs=44.2
Q ss_pred EEEEe-cCCCCCCHHHHHHHhhcCC-----CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCceeCCeEEEEE
Q 025055 61 TVYVS-NLDYALTNSDLHTLFSTFG-----KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (258)
Q Consensus 61 ~lfV~-nLp~~~te~~L~~~F~~~G-----~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~~l~g~~l~V~ 134 (258)
+|||. +--..+...+|-.++..-+ .|-.|.|..+ |.||+... ..+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 56664 3344567777877776544 3556777432 89998886 46888999999999999999998
Q ss_pred Ecc
Q 025055 135 IAA 137 (258)
Q Consensus 135 ~a~ 137 (258)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 360
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=84.80 E-value=0.16 Score=36.32 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=20.0
Q ss_pred cccchhh------hhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWI------ISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~------~~~~~~~k~~~~~~~g~~~ 257 (258)
.||++.+ ++.+ |+++| +.||.++
T Consensus 21 ~nLp~~~~~~~~~t~~~--l~~~F-~~~G~v~ 49 (105)
T 2nlw_A 21 DNVPQVGPDRLEKLKNV--IHKIF-SKFGKIT 49 (105)
T ss_dssp ESCCCCCTTTTTHHHHH--HHHHH-GGGSCEE
T ss_pred eCCCcchhhhhHHHHHH--HHHHH-hcCCCEE
Confidence 9999999 5666 99999 8999864
No 361
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.78 E-value=0.21 Score=36.34 Aligned_cols=26 Identities=0% Similarity=0.177 Sum_probs=22.8
Q ss_pred HHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCc
Q 025055 211 AEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDY 253 (258)
Q Consensus 211 ~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~ 253 (258)
...+|++ +||++.+++++ |+++| ..|
T Consensus 15 ~~~~v~V--------------~nLp~~~te~d--l~~~F-~~~ 40 (109)
T 2dnn_A 15 DDLYVSV--------------HGMPFSAMEND--VRDFF-HGL 40 (109)
T ss_dssp HHHEEEE--------------ECCCSSCCHHH--HHHHT-TTS
T ss_pred CCCEEEE--------------eCCCCCCCHHH--HHHHh-ccC
Confidence 3567999 99999999999 99999 666
No 362
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=84.67 E-value=0.16 Score=37.94 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| ..||.+.
T Consensus 69 ~nlp~~~~~~~--l~~~f-~~~G~i~ 91 (140)
T 2ku7_A 69 GGLAEEVDDKV--LHAAF-IPFGDIT 91 (140)
T ss_dssp ECCCTTCCHHH--HHHHH-GGGSCEE
T ss_pred EeCCCCCCHHH--HHHHH-HhcCCEE
Confidence 99999999999 99999 8999863
No 363
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.33 E-value=0.22 Score=35.55 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=19.8
Q ss_pred cccchhhhhHH--HHHHHHhcCCcc-ccc
Q 025055 232 RNLTIWIISRQ--AAMKELLSGDYG-TFI 257 (258)
Q Consensus 232 rn~~~~~~~~~--~~~k~~~~~~~g-~~~ 257 (258)
+||++.+++++ ..|++|| +.|| .||
T Consensus 15 ~NL~~~~~~~~lk~~L~~lF-~~yGG~Vl 42 (96)
T 2diu_A 15 YNLPANKDGKSVSNRLRRLS-DNCGGKVL 42 (96)
T ss_dssp ESCCTTSCHHHHHHHHHHHH-HTTTCCEE
T ss_pred eCCCCcCCHHHHHHHHHHHH-HHcCCeeE
Confidence 99999999988 1244899 9995 775
No 364
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.01 E-value=0.19 Score=34.64 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=17.7
Q ss_pred cccchhhhhHHHHHHHHhcCCc
Q 025055 232 RNLTIWIISRQAAMKELLSGDY 253 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~ 253 (258)
+||++.+++++ |+++| ..|
T Consensus 16 ~nLp~~~t~~~--l~~~F-~~~ 34 (91)
T 2dgw_A 16 RGAPFNVTEKN--VMEFL-APL 34 (91)
T ss_dssp ECCCSSCCHHH--HHHHH-TTS
T ss_pred ECCCCCCCHHH--HHHHH-hhC
Confidence 99999999999 99999 666
No 365
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=83.63 E-value=0.1 Score=39.20 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=25.9
Q ss_pred HHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHhcCCccccc
Q 025055 212 EERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 212 ~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
..+|++ +||++.+++++ |+++| ..||.|+
T Consensus 42 ~~~l~V--------------~nLp~~~~~~~--l~~~F-~~~G~i~ 70 (139)
T 1u6f_A 42 LRNLMV--------------NYIPTTVDEVQ--LRQLF-ERYGPIE 70 (139)
T ss_dssp TSEEEE--------------ESCSTTCCHHH--HHHHH-HHHSCEE
T ss_pred CCEEEE--------------eCCCCCCCHHH--HHHHH-HhcCCeE
Confidence 456999 99999999999 99999 8999863
No 366
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=82.06 E-value=0.27 Score=33.72 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.7
Q ss_pred cccchhhhhHHHHHHHHhcCCc
Q 025055 232 RNLTIWIISRQAAMKELLSGDY 253 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~ 253 (258)
+||++.+++++ |+++| ..|
T Consensus 11 ~nLp~~~t~~~--l~~~F-~~~ 29 (88)
T 1wg1_A 11 KNLPQDSNCQE--VHDLL-KDY 29 (88)
T ss_dssp ESCCSSCCHHH--HHHHT-CSS
T ss_pred eCCCCCCCHHH--HHHHH-hhC
Confidence 99999999999 99999 666
No 367
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=81.62 E-value=0.17 Score=34.37 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=18.1
Q ss_pred cccchhhhhHHHHHHHHhcCCc
Q 025055 232 RNLTIWIISRQAAMKELLSGDY 253 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~ 253 (258)
+||++.+++++ |+++| ..|
T Consensus 12 ~nLp~~~t~~~--l~~~F-~~~ 30 (87)
T 2hzc_A 12 GNIPFGITEEA--MMDFF-NAQ 30 (87)
T ss_dssp ESCCTTCCHHH--HHHHH-HHH
T ss_pred eCCCCCCCHHH--HHHHH-HHH
Confidence 99999999999 99999 788
No 368
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.11 E-value=0.25 Score=36.34 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=20.5
Q ss_pred cc--cchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RN--LTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn--~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
+| |++..+|++ |+++| +.||.+
T Consensus 31 ~Ng~L~~~~te~~--L~~~F-~~fG~v 54 (114)
T 2cq2_A 31 ANGGLGNGVSRNQ--LLPVL-EKCGLV 54 (114)
T ss_dssp ETCTGGGTCCHHH--HHHHH-HHHSCE
T ss_pred ECCCCCCCCCHHH--HHHHH-HhcCCe
Confidence 88 999999999 99999 999975
No 369
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.92 E-value=0.24 Score=34.86 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.0
Q ss_pred cccchhhhhHHHHHHHHhcCCcccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTF 256 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~ 256 (258)
.||++.+++++ |+++| ..|+.+
T Consensus 21 ~nLp~~~t~~~--l~~~F-~~~~~~ 42 (102)
T 2fc8_A 21 KGLSEDTTEET--LKESF-DGSVRA 42 (102)
T ss_dssp ECCCTTCCHHH--HHHTS-TTCSEE
T ss_pred eCCCCccCHHH--HHHHh-cCCeEE
Confidence 99999999999 99999 566543
No 370
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=80.25 E-value=0.27 Score=36.76 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.1
Q ss_pred cccchhhhhHHHHHH----HHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMK----ELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k----~~~~~~~g~~~ 257 (258)
+||++.+++++ |+ ++| +.||.|+
T Consensus 35 ~nL~~~~~e~~--L~~~L~~~F-~~~G~I~ 61 (127)
T 2a3j_A 35 TNINPEVPKEK--LQALLYALA-SSQGDIL 61 (127)
T ss_dssp ESCCTTSCHHH--HHHHHHHHH-HHHSCEE
T ss_pred eCCCCCCCHHH--HHHHHHHHh-ccCCCeE
Confidence 99999999998 76 689 8999874
No 371
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=76.43 E-value=0.67 Score=37.05 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+++++ |+++| +.||.+.
T Consensus 115 ~nLp~~~t~~~--L~~~F-~~~G~v~ 137 (193)
T 2voo_A 115 KGFPTDATLDD--IKEWL-EDKGQVL 137 (193)
T ss_dssp ECCCTTCCHHH--HHHHH-TTSCCEE
T ss_pred cCCCCcCCHHH--HHHHH-hcCCCEE
Confidence 99999999999 99999 8999863
No 372
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.13 E-value=0.63 Score=32.36 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.5
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.|| .+++++ |+++| ..||.++
T Consensus 21 ~n~--~~t~~~--l~~~F-~~~G~i~ 41 (97)
T 1x5p_A 21 YGE--DMTPTL--LRGAF-SPFGNII 41 (97)
T ss_dssp ECS--SCCHHH--HHHHH-TTTSCEE
T ss_pred cCC--CCCHHH--HHHHH-hhCCCEE
Confidence 996 889999 99999 9999863
No 373
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=69.10 E-value=1.4 Score=31.79 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCCCEEEEecCCCCCCHHH
Q 025055 57 PSKSTVYVSNLDYALTNSD 75 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~ 75 (258)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999864
No 374
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=67.66 E-value=1.1 Score=30.84 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=18.0
Q ss_pred cccchhhhhHHHHHHHHhcCCc
Q 025055 232 RNLTIWIISRQAAMKELLSGDY 253 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~ 253 (258)
+||++.+||++ |+++|+..-
T Consensus 7 ~nLp~~~te~~--l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDD--IRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHH--HHHHHHHHT
T ss_pred eCCCCCCCHHH--HHHHHHHhC
Confidence 99999999999 999998653
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.53 E-value=1.4 Score=32.61 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=20.6
Q ss_pred cccchh-hhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIW-IISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~-~~~~~~~~k~~~~~~~g~~~ 257 (258)
.||+.. |++.+ ||++| ..||.|.
T Consensus 24 ~~l~~~~~sred--Lke~F-~~~G~V~ 47 (121)
T 1owx_A 24 SGDLDDQTCRED--LHILF-SNHGEIK 47 (121)
T ss_dssp EESCCSSCCHHH--HHHHT-CSSCCEE
T ss_pred ecCCCCcCCHHH--HHHHH-HhcCCEE
Confidence 899999 99999 99999 7799874
No 376
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.49 E-value=1.3 Score=31.84 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=16.2
Q ss_pred cccchhhhhHHHHHHHHhc
Q 025055 232 RNLTIWIISRQAAMKELLS 250 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~ 250 (258)
+||++.+++++ |+++|+
T Consensus 14 gnLp~~~te~~--L~~~F~ 30 (114)
T 2dnl_A 14 GGLPPDIDEDE--ITASFR 30 (114)
T ss_dssp ECCCTTCCHHH--HHHHTT
T ss_pred cCCCCCCCHHH--HHHHHH
Confidence 99999999999 999994
No 377
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=63.76 E-value=1.4 Score=32.27 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.4
Q ss_pred cccchhhhhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.|| .+++++ |+++| ..||.|+
T Consensus 45 gnl--~~te~~--L~~~F-~~~G~I~ 65 (121)
T 2bz2_A 45 YGE--DMTPTL--LRGAF-SPFGNII 65 (121)
T ss_dssp ECS--SCCHHH--HHHHH-STTCCCS
T ss_pred cCC--CCCHHH--HHHHH-HccCCEE
Confidence 995 689999 99999 9999874
No 378
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=60.53 E-value=2.5 Score=35.18 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=20.3
Q ss_pred cccchhh---------hhHHHHHHHHhcCCccccc
Q 025055 232 RNLTIWI---------ISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 232 rn~~~~~---------~~~~~~~k~~~~~~~g~~~ 257 (258)
+||++.+ +|.+ |+++| +.||.|.
T Consensus 140 gnL~~~~~~~~~~~~~tEe~--L~~~F-~~fG~I~ 171 (240)
T 3u1l_A 140 GGIDGALNSKHLKPAQIESR--IRFVF-SRLGDID 171 (240)
T ss_dssp ECTTGGGTTCCCCHHHHHHH--HHHHH-HTTSCEE
T ss_pred CCCChhhhcccccccCcHHH--HHHHH-HccCCEE
Confidence 9999988 7777 99999 8999874
No 379
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=60.11 E-value=12 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPRNQLG 176 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~~~~ 176 (258)
...||.|+..||+.++|+.....
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~~ 52 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKTDN 52 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTTSS
T ss_pred CcceeECCCCCCccCcCCCcccc
Confidence 46799999999999999976543
No 380
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=59.20 E-value=4.9 Score=21.53 Aligned_cols=18 Identities=44% Similarity=1.167 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025055 155 SRCYECGDEGHLSYECPR 172 (258)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~ 172 (258)
..||.||..||+..+|+.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 469999999999999984
No 381
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.19 E-value=25 Score=27.50 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=39.1
Q ss_pred CEEEEecCCC-C--------CCHHHHHHHh--hcCCCeEEEEEeecCCCCCcccEEEEEecc-hhHHHHHHH
Q 025055 60 STVYVSNLDY-A--------LTNSDLHTLF--STFGKIARVTVLKDRATRKSRGVAFIQFVQ-IPDALSAAR 119 (258)
Q Consensus 60 ~~lfV~nLp~-~--------~te~~L~~~F--~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~-~~~a~~Ai~ 119 (258)
.++.|-|+|. . ....+|.+.| ..|.++. |+.+.++ .-+.|++.|.|.. -.--..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4677888887 2 3457899977 8998866 5566654 3478999999985 334444444
No 382
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=55.95 E-value=5.5 Score=27.34 Aligned_cols=21 Identities=33% Similarity=1.024 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPRNQ 174 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~~ 174 (258)
...||.||..||++++||..+
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCC
T ss_pred CCeecccCCCCcCcccCCccc
Confidence 356999999999999999754
No 383
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.43 E-value=6.7 Score=24.69 Aligned_cols=21 Identities=38% Similarity=1.002 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPRNQ 174 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~~ 174 (258)
...||.||..||+..+||...
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGGG
T ss_pred CCccccCCCcCcccccCCCCC
Confidence 356999999999999999544
No 384
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=51.72 E-value=2.5 Score=29.03 Aligned_cols=18 Identities=17% Similarity=0.112 Sum_probs=16.4
Q ss_pred cccchhhhhHHHHHHHHhcC
Q 025055 232 RNLTIWIISRQAAMKELLSG 251 (258)
Q Consensus 232 rn~~~~~~~~~~~~k~~~~~ 251 (258)
+||++.+++++ |+++|+.
T Consensus 8 ~nLp~~~t~~~--l~~~F~~ 25 (96)
T 2x1f_A 8 GSIPYDQTEEQ--ILDLCSN 25 (96)
T ss_dssp ESCCTTCCHHH--HHHHHHT
T ss_pred ECCCCCCCHHH--HHHHHHh
Confidence 99999999999 9999943
No 385
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=49.01 E-value=7 Score=24.92 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPRNQLG 176 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~~~~ 176 (258)
...||.|+..||+..+||.....
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~~ 52 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRDGN 52 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC--
T ss_pred CCeeCCCCCCCCCcCCCcCCCcC
Confidence 35689999999999999866543
No 386
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=46.66 E-value=20 Score=23.87 Aligned_cols=21 Identities=38% Similarity=0.869 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025055 153 DKSRCYECGDEGHLSYECPRN 173 (258)
Q Consensus 153 ~~~~~~~~g~~g~~~~~~~~~ 173 (258)
....||.|+..||+..+|+..
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSC
T ss_pred CCCcccccCCcCcCcccCCCC
Confidence 345699999999999998853
No 387
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.42 E-value=7 Score=27.55 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHhcCCccccc
Q 025055 237 WIISRQAAMKELLSGDYGTFI 257 (258)
Q Consensus 237 ~~~~~~~~~k~~~~~~~g~~~ 257 (258)
.+++++ |+++| ..||.|+
T Consensus 28 ~~te~~--L~~~F-~~~G~V~ 45 (100)
T 2d9o_A 28 GYSKDV--LLRLL-QKYGEVL 45 (100)
T ss_dssp SCCHHH--HHHHH-HTTSCEE
T ss_pred CCCHHH--HHHHH-HhcCCEE
Confidence 457788 99999 9999864
No 388
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=39.61 E-value=18 Score=20.53 Aligned_cols=18 Identities=33% Similarity=1.054 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025055 155 SRCYECGDEGHLSYECPR 172 (258)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~ 172 (258)
..|+.|+..||+..+||.
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 568999999999988873
No 389
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=35.80 E-value=27 Score=20.98 Aligned_cols=19 Identities=42% Similarity=1.090 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025055 155 SRCYECGDEGHLSYECPRN 173 (258)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~~ 173 (258)
..||.|+..||+..+|+..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 4688888888888888753
No 390
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=33.07 E-value=44 Score=27.85 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=26.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 93 (258)
..+.|+|||+.++..-|..++.. ..+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999987 6665554443
No 391
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=32.30 E-value=28 Score=19.46 Aligned_cols=17 Identities=53% Similarity=1.306 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 025055 156 RCYECGDEGHLSYECPR 172 (258)
Q Consensus 156 ~~~~~g~~g~~~~~~~~ 172 (258)
.||.++..||+..+|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 47889999999999875
No 392
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.29 E-value=21 Score=25.13 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=11.2
Q ss_pred HHHHHhcCCccccc
Q 025055 244 AMKELLSGDYGTFI 257 (258)
Q Consensus 244 ~~k~~~~~~~g~~~ 257 (258)
.|+++| +.||.|+
T Consensus 42 ~l~~~f-~~~G~v~ 54 (112)
T 2dit_A 42 DLRVEC-SKFGQIR 54 (112)
T ss_dssp HHHHHG-GGTSCCS
T ss_pred HHHHHH-HccCCEe
Confidence 499999 8999874
No 393
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=31.49 E-value=19 Score=22.15 Aligned_cols=19 Identities=37% Similarity=1.062 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025055 155 SRCYECGDEGHLSYECPRN 173 (258)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~~ 173 (258)
..||.|+..||+..+||..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4577777777777777653
No 394
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=29.04 E-value=92 Score=21.96 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhhc-CC---CeEEE-EEeecCCCCCcccEEEEEecchhHHHHH
Q 025055 69 YALTNSDLHTLFST-FG---KIARV-TVLKDRATRKSRGVAFIQFVQIPDALSA 117 (258)
Q Consensus 69 ~~~te~~L~~~F~~-~G---~i~~v-~i~~d~~tg~~rG~aFV~f~~~~~a~~A 117 (258)
..++..+|++.+.. |+ .+.-| .+...-..|++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777766653 33 23333 34444445778888877 7777666544
No 395
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=29.01 E-value=27 Score=29.32 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.7
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 93 (258)
..+.|+|||+.++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655666655544
No 396
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.97 E-value=47 Score=21.06 Aligned_cols=18 Identities=44% Similarity=1.042 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025055 155 SRCYECGDEGHLSYECPR 172 (258)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~ 172 (258)
..||.|+..||+..+|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 346666666666666653
No 397
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.54 E-value=25 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 025055 154 KSRCYECGDEGHLSYECPRNQL 175 (258)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~~~ 175 (258)
...||.|+..||+..+||....
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTTC
T ss_pred CCcccccCCcCCEeccCcCCCC
Confidence 4679999999999999996543
No 398
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=27.01 E-value=41 Score=31.89 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=40.1
Q ss_pred cCCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh
Q 025055 66 NLDYALTNSDLHTLFS----TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (258)
Q Consensus 66 nLp~~~te~~L~~~F~----~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l 121 (258)
..+.+.+-.+|..+|- .+|.|+.+.|..-+. -..+.++++.|.+.++|..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 3455556668888883 678899887755432 345568899999999999988765
No 399
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.79 E-value=1.1e+02 Score=21.55 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhhc-CC---CeEEE-EEeecCCCCCcccEEEEEecchhHHHH
Q 025055 69 YALTNSDLHTLFST-FG---KIARV-TVLKDRATRKSRGVAFIQFVQIPDALS 116 (258)
Q Consensus 69 ~~~te~~L~~~F~~-~G---~i~~v-~i~~d~~tg~~rG~aFV~f~~~~~a~~ 116 (258)
..++..+|++-+.. |+ .+.-| .+...-..|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777766653 33 22333 34444445778899977 777766654
No 400
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.28 E-value=1.1e+02 Score=21.71 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhhc-CC---CeEEE-EEeecCCCCCcccEEEEEecchhHHHHH
Q 025055 69 YALTNSDLHTLFST-FG---KIARV-TVLKDRATRKSRGVAFIQFVQIPDALSA 117 (258)
Q Consensus 69 ~~~te~~L~~~F~~-~G---~i~~v-~i~~d~~tg~~rG~aFV~f~~~~~a~~A 117 (258)
..++..+|++-+.. |+ .+.-| .+...-..|++.|||.| |.+.+.|...
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 34567777666543 33 22333 33344445678899977 7777776643
No 401
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=24.17 E-value=1.7e+02 Score=19.82 Aligned_cols=35 Identities=6% Similarity=0.093 Sum_probs=26.8
Q ss_pred CeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHhCCc
Q 025055 85 KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124 (258)
Q Consensus 85 ~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l~g~ 124 (258)
.|..|.++. ...||-||++...++...+|..+.|.
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 366666653 36899999999988888888877664
No 402
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.19 E-value=67 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=23.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCeEEEEE
Q 025055 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTV 91 (258)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i 91 (258)
..+.|+|||+.++...|..++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 36889999999999988888875434444433
No 403
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=22.91 E-value=7.6 Score=27.20 Aligned_cols=32 Identities=34% Similarity=0.625 Sum_probs=24.3
Q ss_pred CCcccccChHHHHHhhhcccchHHHHHhhhcccchhhhhHHHHHHHHh
Q 025055 202 GWASVVDGGAEERLLLMGENESEEKRKKAKRNLTIWIISRQAAMKELL 249 (258)
Q Consensus 202 ~~~~~~d~~~~~rl~~~~~~~~e~~~~~~~rn~~~~~~~~~~~~k~~~ 249 (258)
+|+... ...+|+.| +|+-|+-+==+++||.|+
T Consensus 76 gWAek~--esGer~vI--------------KnPEyFstYM~eeLkal~ 107 (115)
T 2es9_A 76 GWAEKV--ASGNRILI--------------KNPEYFSTYMQEQLKELV 107 (115)
T ss_dssp HHHHHH--HTTCCCCC--------------SSGGGSCHHHHHHHHHHH
T ss_pred HHHHHh--ccCCeeee--------------cChHHHHHHHHHHHHHHH
Confidence 344443 34678999 999999988888899986
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.52 E-value=2.1e+02 Score=19.79 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEecchhHHHHHHHHh
Q 025055 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (258)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~Ai~~l 121 (258)
..++-|-|-|+|..+-..++--.....|---.|..+- |-|.|.|.+.++...||..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 3467888999999999888777777777555565542 57999999999999998866
No 405
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.17 E-value=33 Score=28.33 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 025055 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (258)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 93 (258)
-..|+|||+.++..-|..++.....+..+.++.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 348999999999999999998766665555443
Done!