Query 025056
Match_columns 258
No_of_seqs 232 out of 1000
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebm_A RWD domain-containing p 100.0 5E-29 1.7E-33 199.7 15.5 120 1-131 8-127 (128)
2 2yz0_A Serine/threonine-protei 100.0 7.1E-29 2.4E-33 201.4 13.7 120 1-125 8-128 (138)
3 1ukx_A GCN2, GCN2 EIF2alpha ki 100.0 6.2E-28 2.1E-32 195.3 14.4 122 1-126 8-130 (137)
4 2day_A Ring finger protein 25; 99.9 4.3E-26 1.5E-30 182.6 12.4 118 3-125 8-125 (128)
5 2ebk_A RWD domain-containing p 99.9 4.1E-26 1.4E-30 182.9 11.8 120 1-130 5-126 (128)
6 2dax_A Protein C21ORF6; RWD do 99.9 8.3E-24 2.8E-28 174.5 12.8 124 1-130 6-144 (152)
7 2daw_A RWD domain containing p 99.9 1.1E-22 3.9E-27 168.3 11.4 121 2-131 13-147 (154)
8 4a9a_C Translation machinery-a 98.3 4.1E-07 1.4E-11 73.3 4.2 44 149-200 34-77 (142)
9 2a7l_A Hypothetical ubiquitin- 95.5 0.069 2.3E-06 42.5 8.7 75 1-83 20-95 (136)
10 2pwq_A Ubiquitin conjugating e 94.4 0.12 4.1E-06 44.3 7.8 106 7-124 27-135 (216)
11 2fo3_A Ubiquitin-conjugating e 94.2 0.29 9.9E-06 38.0 8.9 69 6-83 9-77 (125)
12 2h2y_A Ubiquitin-conjugating e 94.1 0.48 1.6E-05 37.4 10.3 70 5-83 22-91 (136)
13 1zdn_A Ubiquitin-conjugating e 93.9 0.43 1.5E-05 38.6 9.8 69 6-83 16-84 (158)
14 2e2c_A Ubiquitin conjugating e 93.8 0.63 2.1E-05 37.4 10.6 70 5-83 11-80 (156)
15 2ayv_A Ubiquitin-conjugating e 93.8 0.41 1.4E-05 39.1 9.5 69 6-83 24-92 (166)
16 1ayz_A UBC2, ubiquitin-conjuga 93.6 0.43 1.5E-05 39.1 9.4 69 6-83 7-75 (169)
17 2aak_A UBC1, ubiquitin conjuga 93.6 0.51 1.7E-05 37.8 9.6 69 6-83 7-75 (152)
18 1wzv_A Ubiquitin-conjugating e 93.5 0.38 1.3E-05 38.7 8.8 70 5-83 6-75 (155)
19 2c2v_B Ubiquitin-conjugating e 93.3 0.58 2E-05 37.6 9.5 68 7-83 9-76 (154)
20 2c4o_A Ubiquitin-conjugating e 93.2 0.57 1.9E-05 38.2 9.5 68 7-83 23-90 (165)
21 2bep_A Ubiquitin-conjugating e 93.2 0.73 2.5E-05 37.1 10.0 69 6-83 11-82 (159)
22 1z2u_A Ubiquitin-conjugating e 93.0 0.48 1.7E-05 37.8 8.6 68 7-83 8-75 (150)
23 1yh2_A HSPC150 protein similar 92.8 0.68 2.3E-05 37.8 9.4 68 7-83 8-75 (169)
24 4gpr_A Ubiquitin-conjugating e 92.8 0.81 2.8E-05 36.5 9.7 68 7-83 8-75 (151)
25 1jat_A Ubiquitin-conjugating e 92.8 0.47 1.6E-05 38.1 8.3 68 7-83 9-76 (155)
26 3bzh_A Ubiquitin-conjugating e 92.7 0.45 1.5E-05 39.9 8.3 69 6-83 51-119 (194)
27 2r0j_A Ubiquitin carrier prote 92.6 0.53 1.8E-05 37.6 8.3 68 7-83 5-72 (149)
28 1yrv_A Ubiquitin-conjugating l 92.5 0.77 2.6E-05 37.6 9.3 68 7-83 27-94 (169)
29 3fn1_B NEDD8-conjugating enzym 92.3 0.7 2.4E-05 37.5 8.8 69 6-83 17-85 (167)
30 3rz3_A Ubiquitin-conjugating e 92.2 1.2 4.1E-05 36.8 10.3 71 5-83 9-79 (183)
31 3h8k_A Ubiquitin-conjugating e 92.1 1.4 4.7E-05 35.6 10.4 69 7-83 7-75 (164)
32 1fxt_A Ubiquitin-conjugating e 92.0 0.79 2.7E-05 36.5 8.7 69 7-83 5-73 (149)
33 2awf_A Ubiquitin-conjugating e 92.0 1.1 3.9E-05 36.6 9.8 68 8-83 22-89 (172)
34 1y8x_A Ubiquitin-conjugating e 91.3 0.34 1.2E-05 39.3 5.8 41 38-83 35-75 (160)
35 2ucz_A UBC7, ubiquitin conjuga 91.3 1.6 5.5E-05 35.3 10.0 69 7-83 8-76 (165)
36 1c4z_D UBCH7, ubiquitin conjug 91.3 0.33 1.1E-05 39.0 5.7 41 38-83 33-73 (154)
37 2z5d_A Ubiquitin-conjugating e 90.9 0.22 7.5E-06 41.4 4.3 65 6-83 28-92 (179)
38 2nvu_C NEDD8-conjugating enzym 90.7 0.32 1.1E-05 40.3 5.1 41 38-83 55-95 (180)
39 2f4w_A Ubiquitin-conjugating e 90.6 1 3.5E-05 37.4 8.3 69 6-83 17-85 (187)
40 3o2u_A NEDD8-conjugating enzym 90.6 0.5 1.7E-05 39.5 6.3 40 39-83 65-104 (190)
41 1i7k_A Ubiquitin-conjugating e 90.6 1.1 3.7E-05 37.1 8.3 69 6-83 33-101 (179)
42 2onu_A Ubiquitin-conjugating e 90.5 0.6 2.1E-05 37.5 6.6 42 38-83 29-70 (152)
43 2q0v_A Ubiquitin-conjugating e 90.5 1.7 6E-05 35.0 9.3 71 7-83 25-96 (156)
44 2gjd_A Ubiquitin-conjugating e 90.5 1.4 4.9E-05 35.4 8.8 73 6-83 7-80 (157)
45 1jat_B Ubiquitin-conjugating e 90.3 0.54 1.9E-05 37.1 6.0 71 7-83 10-81 (138)
46 2grr_A Ubiquitin-conjugating e 89.8 0.73 2.5E-05 37.3 6.5 73 6-83 10-83 (161)
47 3rcz_B SUMO-conjugating enzyme 89.7 1.8 6.1E-05 35.1 8.8 73 6-83 13-86 (163)
48 2y9m_A Ubiquitin-conjugating e 89.5 0.65 2.2E-05 38.1 6.0 41 38-82 48-88 (172)
49 2a4d_A Ubiquitin-conjugating e 89.0 0.77 2.6E-05 37.3 6.1 71 7-83 29-100 (160)
50 4ds2_A Ubiquitin-conjugating e 88.9 1.5 5.1E-05 35.6 7.8 42 38-83 50-93 (167)
51 1yf9_A Ubiquitin carrier prote 88.8 0.78 2.7E-05 37.6 6.1 42 38-83 38-79 (171)
52 2f4z_A Tgtwinscan_2721 - E2 do 88.8 0.74 2.5E-05 38.6 6.0 42 38-83 75-116 (193)
53 3k9o_A Ubiquitin-conjugating e 88.7 0.77 2.6E-05 38.5 6.1 70 5-83 7-79 (201)
54 3kpa_A Probable ubiquitin fold 88.6 0.22 7.5E-06 40.5 2.4 25 59-83 85-109 (168)
55 1zuo_A Hypothetical protein LO 88.5 0.31 1.1E-05 40.7 3.5 24 60-83 90-113 (186)
56 2z6o_A UFM1-conjugating enzyme 86.9 0.31 1.1E-05 40.2 2.4 24 59-82 83-106 (172)
57 3e46_A Ubiquitin-conjugating e 86.5 1.1 3.9E-05 39.1 6.0 42 38-83 90-131 (253)
58 4ddg_A Ubiquitin-conjugating e 86.0 3.2 0.00011 38.4 9.1 68 7-83 7-74 (399)
59 2hlw_A Ubiquitin-conjugating e 85.3 0.98 3.4E-05 37.0 4.7 70 6-83 38-110 (170)
60 1tte_A Ubiquitin-conjugating e 83.7 0.67 2.3E-05 39.5 3.1 68 7-83 6-74 (215)
61 3ceg_A Baculoviral IAP repeat- 83.5 1.6 5.4E-05 39.6 5.7 67 7-83 80-151 (323)
62 2x4k_A 4-oxalocrotonate tautom 77.5 3.6 0.00012 26.6 4.5 36 74-109 2-37 (63)
63 3m20_A 4-oxalocrotonate tautom 75.8 3.9 0.00013 27.2 4.4 33 76-109 1-33 (62)
64 2opa_A Probable tautomerase YW 74.8 3.8 0.00013 26.6 4.1 34 76-109 1-34 (61)
65 1otf_A 4-oxalocrotonate tautom 74.4 3.9 0.00013 26.6 4.0 34 76-109 1-34 (62)
66 3abf_A 4-oxalocrotonate tautom 72.8 4.4 0.00015 26.5 4.0 35 75-109 1-35 (64)
67 3ry0_A Putative tautomerase; o 72.8 4.4 0.00015 27.0 4.1 34 76-109 1-34 (65)
68 3zqs_A E3 ubiquitin-protein li 72.5 21 0.00072 29.6 8.9 38 37-83 25-62 (186)
69 3r3q_A Suppressor protein STP2 72.4 3 0.0001 34.0 3.6 24 59-82 81-104 (162)
70 3obq_A Tumor susceptibility ge 72.0 3 0.0001 33.4 3.5 24 59-82 69-92 (146)
71 3mb2_A 4-oxalocrotonate tautom 71.6 4 0.00014 27.9 3.7 35 75-109 1-35 (72)
72 3m21_A Probable tautomerase HP 69.6 5.7 0.0002 26.6 4.1 34 76-109 1-37 (67)
73 3ej9_A Alpha-subunit of trans- 67.1 6.6 0.00022 27.3 4.1 35 75-109 1-35 (76)
74 3qc5_X Platelet binding protei 57.9 19 0.00066 32.7 6.2 41 59-101 270-310 (360)
75 4fp9_B Mterf domain-containing 53.9 4.7 0.00016 36.5 1.6 20 151-170 260-279 (335)
76 1gyx_A YDCE, B1461, hypothetic 51.6 21 0.0007 24.5 4.4 34 76-109 1-35 (76)
77 3mlc_A FG41 malonate semialdeh 48.1 27 0.00092 27.0 5.0 43 65-108 50-97 (136)
78 3ej9_B Beta-subunit of trans-3 47.6 24 0.00083 24.6 4.1 34 76-109 1-34 (70)
79 2aal_A Malonate semialdehyde d 41.3 28 0.00095 26.3 4.1 35 75-109 1-35 (131)
80 3mlc_A FG41 malonate semialdeh 36.0 28 0.00095 26.9 3.3 34 76-109 1-34 (136)
81 3c6v_A Probable tautomerase/de 29.0 69 0.0024 25.5 4.7 34 75-109 22-56 (161)
82 1mww_A Hypothetical protein HI 28.6 87 0.003 23.3 5.0 34 75-108 59-92 (128)
83 2wkb_A Macrophage migration in 28.5 70 0.0024 23.8 4.4 37 76-112 1-37 (125)
84 1hfo_A Migration inhibitory fa 27.9 73 0.0025 23.0 4.4 38 72-109 53-90 (113)
85 2wkb_A Macrophage migration in 26.6 45 0.0015 24.9 3.0 37 72-108 54-90 (125)
86 3fcs_B Integrin beta-3; beta p 25.6 49 0.0017 32.7 3.8 53 37-100 85-137 (690)
87 1uiz_A MIF, macrophage migrati 25.5 87 0.003 22.7 4.4 36 73-108 55-90 (115)
88 3t5s_A Gilaa.00834.A, macropha 23.8 1E+02 0.0036 23.5 4.7 38 74-111 21-58 (135)
89 2xcz_A Possible ATLS1-like lig 23.6 65 0.0022 23.5 3.4 37 75-112 1-37 (115)
90 2aal_A Malonate semialdehyde d 21.9 1.5E+02 0.0052 22.0 5.3 32 76-108 67-98 (131)
91 2xcz_A Possible ATLS1-like lig 21.7 87 0.003 22.7 3.7 36 73-108 55-90 (115)
92 3b64_A Macrophage migration in 21.5 1.2E+02 0.0043 21.8 4.6 36 76-112 1-37 (112)
93 3k6s_B Integrin beta-2; cell r 21.2 54 0.0018 32.5 3.1 54 36-100 77-130 (687)
94 1p3q_Q VPS9P, vacuolar protein 21.0 67 0.0023 21.2 2.6 18 5-22 9-26 (54)
No 1
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=5e-29 Score=199.68 Aligned_cols=120 Identities=38% Similarity=0.534 Sum_probs=108.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEE
Q 025056 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV 80 (258)
Q Consensus 1 m~d~~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l 80 (258)
||+|.++|.+||+||+|||+++|++++. .+.+|+|+|.+..++. ...++|.|+|+||++||+++|.|.|
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~~~~-------~~~~~~i~i~~~~~~~----~~~~~~~L~v~~p~~YP~~~P~i~l 76 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTVLSE-------NPPSFTITVTSEAGEN----DETVQTTLKFTYSEKYPDEAPLYEI 76 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEECCS-------SSCEEEECCBCCCCTT----SCCCBEEEEEECCSSTTTSCCEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceEEccC-------CCCEEEEEEecCCCCC----cCceeEEEEEEeCCCCCCCCceEEE
Confidence 8999999999999999999999998865 2479999998764321 2357899999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcccc
Q 025056 81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG 131 (258)
Q Consensus 81 ~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~~~~~~~ 131 (258)
.+.+||+...+..|++.|.+.+++++|++|||+||+|||++|.+++++++.
T Consensus 77 ~~~~~l~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~~ 127 (128)
T 2ebm_A 77 FSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT 127 (128)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHhc
Confidence 988899999999999999999999999999999999999999999988754
No 2
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.1e-29 Score=201.38 Aligned_cols=120 Identities=24% Similarity=0.424 Sum_probs=108.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCceeeccCCCCCCC-CCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceE
Q 025056 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLN-TSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN 79 (258)
Q Consensus 1 m~d~~EeQ~eElEALeSIY~de~~~i~~~~~~~~-~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~ 79 (258)
||+|.++|.+||+||+|||+++|.+++...++|+ ..+.+|+|+|.+..+. ...+.|.|+|+||++||+++|.|.
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~-----~~~~~~~L~~~~p~~YP~~~P~i~ 82 (138)
T 2yz0_A 8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKE-----PVESSITLHFAMTPMYPYTAPEIE 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCS-----SCCCEEEEEEECCSSTTSSCCEEE
T ss_pred ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCC-----CCceEEEEEEECCCCCCCCCCeEE
Confidence 6889999999999999999999999877656776 3467999999875431 235799999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 025056 80 VKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER 125 (258)
Q Consensus 80 l~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~ 125 (258)
|.+.+||+..++..|++.|...+++++|++|||+||+|||+||.++
T Consensus 83 l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 128 (138)
T 2yz0_A 83 FKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128 (138)
T ss_dssp EECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998
No 3
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=99.95 E-value=6.2e-28 Score=195.32 Aligned_cols=122 Identities=27% Similarity=0.422 Sum_probs=106.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCceeeccCCCCCCC-CCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceE
Q 025056 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLN-TSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN 79 (258)
Q Consensus 1 m~d~~EeQ~eElEALeSIY~de~~~i~~~~~~~~-~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~ 79 (258)
||+|.++|++||+||+|||+++|+.++.. .+|. ..+.+|+|+|.+...++ ....+.|.|+|+||++||+++|.|.
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~~---~~~~~~~~L~v~~p~~YP~~~P~i~ 83 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQDLRPD-ARGRVREPPEINLVLYPQGLAG---EEVYVQVELRVKCPPTYPDVVPEID 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEECCCC-CSSSCCCCCCEEEEECCTTSCS---SSCSCEEEEEECCCTTTTSSCCCCE
T ss_pred CcchHHHHHHHHHHHHHHCcccceeccCc-ccCccCCCcEEEEEEecCCcCC---cccceEEEEEEECCCCCCCCCCcEE
Confidence 78999999999999999999999988754 2343 23679999998753221 2235789999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 025056 80 VKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERY 126 (258)
Q Consensus 80 l~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~~ 126 (258)
+.+.+||+..++..|++.|..++++++|++|||+||+|||+||.+++
T Consensus 84 l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~ 130 (137)
T 1ukx_A 84 LKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 130 (137)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcC
Confidence 98889999999999999999999999999999999999999999875
No 4
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=99.93 E-value=4.3e-26 Score=182.59 Aligned_cols=118 Identities=29% Similarity=0.452 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEec
Q 025056 3 DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (258)
Q Consensus 3 d~~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~ 82 (258)
+..+.|++||+||+|||+++|++++... ...+.+|+|+|.+...++.+ ...+.|.|+|+||++||+++|.|.+.+
T Consensus 8 e~~e~~~~EleaL~SIY~de~~~~~~~~---~~~~~~~~i~l~~~~~~~~~--~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 8 EEDWVLPSEVEVLESIYLDELQVIKGNG---RTSPWEIYITLHPATAEDQD--SQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CCCCHHHHHHHHHHHHSTTTEEEECCTT---SSCCEEEEEEECCSCCSSSS--CCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCceEEecCCC---CCCCeEEEEEEecCCCCCcc--ccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 4567899999999999999999886421 11357899999876443211 235799999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 025056 83 LRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER 125 (258)
Q Consensus 83 ~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~ 125 (258)
.+||+..++..|++.|.+++++++||+|||+||+|+|+||.++
T Consensus 83 ~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 125 (128)
T 2day_A 83 PRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGP 125 (128)
T ss_dssp EESSCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999654
No 5
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=4.1e-26 Score=182.92 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=103.5
Q ss_pred CCChHHHHHHHHHHHHHhcCC--ceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCce
Q 025056 1 MTDHVQEQEMEIEALEAILMD--EFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLL 78 (258)
Q Consensus 1 m~d~~EeQ~eElEALeSIY~d--e~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i 78 (258)
|.++.++|.+||+||+|||++ +|++++... ..+++|+|+|.+.... ...+.|.|+|+||++||+++|.|
T Consensus 5 ~~~~~e~q~~EleaL~SIy~d~~e~~~~~~~~----~~~~~f~i~l~~~~~~-----~~~~~~~L~~~~p~~YP~~~P~i 75 (128)
T 2ebk_A 5 SSGMAEPVQEELSVLAAIFCRPHEWEVLSRSE----TDGTVFRIHTKAEGFM-----DADIPLELVFHLPVNYPSCLPGI 75 (128)
T ss_dssp CCCSCHHHHHHHHHHHHHHCCTTTCCCSEECS----SSCEEEEEEEECCTTT-----TCCCEEEEEEEECSSTTSSCCCC
T ss_pred chhHHHHHHHHHHHHHHHcCCCCceEEecCCC----CCCCeEEEEecCCCCC-----CCCeEEEEEEECCCCCCCCCCeE
Confidence 346789999999999999998 898876431 1246999999876421 12468999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhccc
Q 025056 79 NVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDA 130 (258)
Q Consensus 79 ~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~~~~~~ 130 (258)
.|. .+||+..++..|++.|...+++++||+|||+||+|||++|.+++.+++
T Consensus 76 ~l~-~~~L~~~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~~p~ 126 (128)
T 2ebk_A 76 SIN-SEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQPE 126 (128)
T ss_dssp CCC-CSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHHHCCCC
T ss_pred EEE-hhhCCHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCcC
Confidence 998 589999999999999999999999999999999999999999998764
No 6
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.91 E-value=8.3e-24 Score=174.47 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHHHHHHhcC--CceeeccCC------------CCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEe
Q 025056 1 MTDHVQEQEMEIEALEAILM--DEFKEIHSG------------ESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFS 66 (258)
Q Consensus 1 m~d~~EeQ~eElEALeSIY~--de~~~i~~~------------~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~ 66 (258)
||+|.++|.+||+||+|||| ++|++++.. ...|..+..+|+|+|...... ...+.|.|+|+
T Consensus 6 ~~~~~e~Q~~EleaL~SIY~~~de~~~~~~~~~~~l~~~~~~~~~~~p~~~~~f~I~l~~~~~~-----~~~~~l~L~v~ 80 (152)
T 2dax_A 6 SGEQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSD-----EKMAMFSLACI 80 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECST-----TCEEEEEEEEE
T ss_pred ccchHHHHHHHHHHHHHhCCCCCeEEEcCchhHHHHHHHhhcccccCCCCceEEEEEEecCCCC-----ccCceEEEEEE
Confidence 78999999999999999999 889887641 001110125899998764321 23578999999
Q ss_pred eCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHhhccc
Q 025056 67 HTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEAS-ENLGMAMIYTLVTSAKEWLSERYSQDA 130 (258)
Q Consensus 67 ~p~~YP~~~P~i~l~~~~gL~~~~~~~L~~~L~~~~e-enlG~~mIF~lve~lkE~L~e~~~~~~ 130 (258)
||++||+++|.|.|.+. +++..+...|++.|...++ +++||+|||+||+|||+++.+++.+..
T Consensus 81 lP~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~~~~~ 144 (152)
T 2dax_A 81 LPFKYPAVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRDT 144 (152)
T ss_dssp ECSSTTSSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999874 6888888999998887765 589999999999999999999987653
No 7
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.88 E-value=1.1e-22 Score=168.30 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=98.0
Q ss_pred CChHHHHHHHHHHHHHhcC--CceeeccCCC----------CCCCCCC-ceEEEEecCCCCCCccCCCCCceEEEEEeeC
Q 025056 2 TDHVQEQEMEIEALEAILM--DEFKEIHSGE----------SGLNTSN-QCFQVTLSPQDDEADESTMPPVELALIFSHT 68 (258)
Q Consensus 2 ~d~~EeQ~eElEALeSIY~--de~~~i~~~~----------~~~~~~~-~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p 68 (258)
+++.|+|.+||+||+|||| ++|++++... ..+..++ ..|+|.|+.... ...|.|+|+||
T Consensus 13 ~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~~--------~~~i~L~v~lP 84 (154)
T 2daw_A 13 KESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP--------KVKIDLQVTMP 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETTT--------TEEEEEEEEEC
T ss_pred hhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCCC--------CceEEEEEEcC
Confidence 5789999999999999999 8898875311 0111111 478877665322 24799999999
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHhhcccc
Q 025056 69 EKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASEN-LGMAMIYTLVTSAKEWLSERYSQDAG 131 (258)
Q Consensus 69 ~~YP~~~P~i~l~~~~gL~~~~~~~L~~~L~~~~een-lG~~mIF~lve~lkE~L~e~~~~~~~ 131 (258)
++||+++|.|.|.+. |++..+...|++.|...++++ +|++|||+||+|||+++.+++.+.+.
T Consensus 85 ~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~l~~~~~ 147 (154)
T 2daw_A 85 HSYPYLALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNRKL 147 (154)
T ss_dssp SSTTSSCCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCCCCC
T ss_pred CCCCCCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCcCC
Confidence 999999999999986 899999999999999988777 79999999999999999999877643
No 8
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.30 E-value=4.1e-07 Score=73.28 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCCchhhhhhcCC
Q 025056 149 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGR 200 (258)
Q Consensus 149 ~gt~vT~E~F~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~~klTGRqlFe~~~ 200 (258)
..||||.++|+.||.++..++....++. ..++++|||++|..+.
T Consensus 34 nlTpVT~EtF~~WKk~k~~ek~~~~~~~--------~~kk~~tGRei~~~g~ 77 (142)
T 4a9a_C 34 KLTPITIANFAQWKKDHVIAKINAEKKL--------SSKRKPTGREIILKMS 77 (142)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HTTSCCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHHHHHhcc
Confidence 4699999999999999988775443322 2235799999999864
No 9
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=95.50 E-value=0.069 Score=42.46 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCceeec-cCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceE
Q 025056 1 MTDHVQEQEMEIEALEAILMDEFKEI-HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN 79 (258)
Q Consensus 1 m~d~~EeQ~eElEALeSIY~de~~~i-~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~ 79 (258)
|.........|+..|+.=-+..+.+. .... ..-..+.+.|.+..+ .....-.+.|.|.+|++||..||.|.
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~ 91 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQ----NSITQWIVDMEGAPG----TLYEGEKFQLLFKFSSRYPFDSPQVM 91 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCC----CSCEEEEEEEECCTT----STTTTCEEEEEEEECTTTTTSCCEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCc----cccceeEEEEECCCC----CccccEEEEEEEECCCCCCCCCCEEE
Confidence 44434556678988876444444321 1110 122456666654322 12334578999999999999999999
Q ss_pred EecC
Q 025056 80 VKSL 83 (258)
Q Consensus 80 l~~~ 83 (258)
+...
T Consensus 92 F~T~ 95 (136)
T 2a7l_A 92 FTGE 95 (136)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8754
No 10
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=94.44 E-value=0.12 Score=44.30 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC---
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL--- 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~--- 83 (258)
....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 27 RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 97 (216)
T 2pwq_A 27 RLQKELKDIENENVQEIDAHIKD-----SNFFEWVGFIKGPEG----TPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97 (216)
T ss_dssp HHHHHHHHHHHSCTTTEEEEECS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CccceeEEEEeCCCC----CCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence 44568888876544444432211 123466666653221 123345789999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 025056 84 RGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE 124 (258)
Q Consensus 84 ~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e 124 (258)
+++....-......|...|.-..+ |.+++..|+..|.+
T Consensus 98 PNI~~~~G~ICL~iL~~~WsP~~t---i~~VL~sI~sLL~~ 135 (216)
T 2pwq_A 98 PNISSQTGAICLDVLKNEWSPALT---IRTALLSIQALLSD 135 (216)
T ss_dssp TTBCTTTCBBCCHHHHHHCCTTCC---HHHHHHHHHHHHHS
T ss_pred CCCcCCCCEEEchhhcccCCCCCc---HHHHHHHHHHHHhC
Confidence 344321111122334444433322 55666666666643
No 11
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=94.15 E-value=0.29 Score=38.01 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..-..|+..|+.=-+..+.+.... ..-..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~~~-----~~l~~w~~~i~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 77 (125)
T 2fo3_A 9 YRIQKELHNFLNNPPINCTLDVHP-----NNIRIWIVKYVGLEN----TIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77 (125)
T ss_dssp CHHHHHHHHHHHSCCTTEEEEECT-----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCc-----chhhhhheEEeCCCC----CCcCCCEEEEEEEcCCCCCCCCCEEEEeCC
Confidence 345678888876434444332110 123456666653222 123345789999999999999999998764
No 12
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=94.13 E-value=0.48 Score=37.36 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 5 ~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
...-..|+..|+.=-+..+.+.... ..-..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 22 ~~RL~kEl~~l~~~~~~~~~~~~~~-----~nl~~W~~~I~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 91 (136)
T 2h2y_A 22 NYRIQKELNNFLKNPPINCTIDVHP-----SNIRIWIVQYVGLEN----TIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91 (136)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECT-----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred HHHHHHHHHHHHhCCCCCeEEEecc-----ccccccEEEEECCCC----CceeCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence 3455678888876434444332110 123456666653222 123345799999999999999999998754
No 13
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=93.91 E-value=0.43 Score=38.56 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 16 ~RL~kEl~~l~~~~~~gi~~~~~~-----~~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 84 (158)
T 1zdn_A 16 RLVYKEVTTLTADPPDGIKVFPNE-----EDLTDLQVTIEGPEG----TPYAGGLFRMKLLLGKDFPASPPKGYFLTK 84 (158)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECC-----CChhheeEEEECCCC----CCccCcEEEEEEEcCCCCCCCCCEEEeccC
Confidence 345678888887555555443211 123456666653222 123345789999999999999999998765
No 14
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=93.79 E-value=0.63 Score=37.43 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 5 ~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
......|+..|+.--+..+...... .....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 11 ~~RL~kEl~~l~~~~~~~i~~~p~~-----~~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (156)
T 2e2c_A 11 SKRLQQELRTLLMSGDPGITAFPDG-----DNLFKWVATLDGPKD----TVYESLKYKLTLEFPSDYPYKPPVVKFTTP 80 (156)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEEESS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECC-----CCccEEEEEEECCCC----CCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3455678888876434444432111 123456666653222 123345789999999999999999998764
No 15
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=93.78 E-value=0.41 Score=39.13 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 24 ~RL~kEl~~l~~~~~~gi~~~~~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 92 (166)
T 2ayv_A 24 KRINKELNDLSKDPPTNCSAGPVG-----DDMFHWQATIMGPED----SPYSGGVFFLNIHFPSDYPFKPPKVNFTTK 92 (166)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcC-----CCcceeeEEEECCCC----CCcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence 345678888887544445432211 123566777663322 123345799999999999999999998764
No 16
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=93.63 E-value=0.43 Score=39.10 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 7 ~RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----tpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 75 (169)
T 1ayz_A 7 RRLMRDFKRMKEDAPPGVSASPLP-----DNVMVWNAMIIGPAD----TPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75 (169)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEET-----TEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEecC-----CccccceEEEECCCC----CCcCCCEEEEEEECcccCCCCCCccccccC
Confidence 344678988887555555432211 012345555543221 123345789999999999999999998764
No 17
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=93.55 E-value=0.51 Score=37.79 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+...... .....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 7 ~RL~~E~~~l~~~~~~~i~~~~~~-----~~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (152)
T 2aak_A 7 KRLMRDFKRLQQDPPAGISGAPQD-----NNIMLWNAVIFGPDD----TPWDGGTFKLSLQFSEDYPNKPPTVRFVSR 75 (152)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEET-----TEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCC-----CCccEEEEEEeCCCC----CCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence 345678888887555444432111 012345555543221 113345789999999999999999998764
No 18
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=93.50 E-value=0.38 Score=38.68 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 5 ~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
......|+..|+.--+..+....... .....+.+.|.|.+. ....-.+.|.|.+|++||..||.|.+...
T Consensus 6 ~~RL~kEl~~l~~~~~~~i~~~~~~~----~~l~~w~~~I~P~~t-----pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (155)
T 1wzv_A 6 SMRVVKELEDLQKKPPPYLRNLSSDD----ANVLVWHALLLPDQP-----PYHLKAFNLRISFPPEYPFKPPMIKFTTK 75 (155)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEECS----SCTTEEEEEECCCST-----TGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCC----CchheEEEEEcCCCC-----CCCCCEEEEEEECCCCCCCCCCcceeeCC
Confidence 34556789999876555555422110 123456666654322 12335789999999999999999998764
No 19
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=93.27 E-value=0.58 Score=37.59 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-=+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 9 RL~kEl~~l~~~~~~~i~~~~~~-----~~l~~w~~~i~GP~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (154)
T 2c2v_B 9 RIIKETQRLLAEPVPGIKAEPDE-----SNARYFHVVIAGPQD----SPFEGGTFKLELFLPEEYPMAAPKVRFMTK 76 (154)
T ss_dssp HHHHHHHHHHHSCCTTEEEEECS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECC-----CchheEEEEEECCCC----CCcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence 44578888876544444432211 123456666653221 123345789999999999999999998764
No 20
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=93.23 E-value=0.57 Score=38.18 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 23 RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegg~f~l~i~fp~~YP~~PP~v~F~T~ 90 (165)
T 2c4o_A 23 RIHKELNDLARDPPAQCSAGPVG-----DDMFHWQATIMGPND----SPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 90 (165)
T ss_dssp HHHHHHHHHHSSCCTTEEEEESS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CCcceeEEEEECCCC----CCccCceEEEEEECCCcCCCCCCEEEEecC
Confidence 44568888876434444432111 123466666663322 123345789999999999999999998764
No 21
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=93.16 E-value=0.73 Score=37.14 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHH---hcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEec
Q 025056 6 QEQEMEIEALEA---ILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (258)
Q Consensus 6 EeQ~eElEALeS---IY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~ 82 (258)
.....|+..|+. .-+..+.+.... .....+.+.|....+ .....-.+.|.|.||++||..||.|.+..
T Consensus 11 ~RL~kEl~~l~~~~~~~~~~i~~~~~~-----~~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t 81 (159)
T 2bep_A 11 QRIKREFKEVLKSEETSKNQIKVDLVD-----ENFTELRGEIAGPPD----TPYEGGRYQLEIKIPETYPFNPPKVRFIT 81 (159)
T ss_dssp HHHHHHHHHHHHCHHHHTTSEEEEECS-----SSSSEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEeCC-----CchheEEEEEECCCC----CCccCCEEEEEEeCCCcCCCCCCEEEeeC
Confidence 345568888875 223334332111 123456666653221 12334578999999999999999999876
Q ss_pred C
Q 025056 83 L 83 (258)
Q Consensus 83 ~ 83 (258)
.
T Consensus 82 ~ 82 (159)
T 2bep_A 82 K 82 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=92.98 E-value=0.48 Score=37.81 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 8 RL~kEl~~l~~~~~~~~~~~~~~-----~~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (150)
T 1z2u_A 8 RIQKELQDLGRDPPAQCSAGPVG-----DDLFHWQATIMGPPE----SPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 75 (150)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEET-----TEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECC-----CcceEEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCcEEEEecC
Confidence 44678888887544444432111 012455666653222 123345789999999999999999998754
No 23
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=92.83 E-value=0.68 Score=37.79 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 8 RL~kEl~~l~~~~~~gi~~~~~~-----~~l~~w~~~I~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (169)
T 1yh2_A 8 RLKRELHMLATEPPPGITCWQDK-----DQMDDLRAQILGGAN----TPYEKGVFKLEVIIPERYPFEPPQIRFLTP 75 (169)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCC-----CchheEEEEEECCCC----CCccCCEEEEEEEeCCCCCCCCcEEEeecC
Confidence 44578888877544444432211 122456666543221 123345789999999999999999998764
No 24
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=92.82 E-value=0.81 Score=36.54 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-=+..+.+.... ..-..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 8 RL~kEl~~l~~~~~~~i~~~p~~-----~nl~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (151)
T 4gpr_A 8 RIQKELREIQQDPPCNCSAGPVG-----DDIFHWTATITGPDD----SPYQGGLFFLDVHFPVDYPFKAPRVTFMTK 75 (151)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESS-----SCTTEEEEEEECCSS----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CCceEEEEEEeCCCC----CCcCCCEEEEEEECCCCCCCCcceeEEecC
Confidence 44677888876444444332211 123466777663322 123345789999999999999999998764
No 25
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=92.79 E-value=0.47 Score=38.14 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-=+..+.+.... .....+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 9 RL~kE~~~l~~~~~~~i~~~~~~-----~~l~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (155)
T 1jat_A 9 RIIKETEKLVSDPVPGITAEPHD-----DNLRYFQVTIEGPEQ----SPYEDGIFELELYLPDDYPMEAPKVRFLTK 76 (155)
T ss_dssp HHHHHHHHHHHSCCTTEEEEEET-----TEEEEEEEEEECCTT----STTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECC-----CchhEEEEEEECCCC----CCccCcEEEEEEEcCCCCCCCCCcceeecc
Confidence 45578888876444444432111 012455666643221 123346799999999999999999998764
No 26
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=92.71 E-value=0.45 Score=39.94 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+.+.... .....+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 51 ~RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 119 (194)
T 3bzh_A 51 KRIQKELADITLDPPPNCSAGPKG-----DNIYEWRSTILGPPG----SVYEGGVFFLDITFTPEYPFKPPKVTFRTR 119 (194)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEESS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCceeeccc-----CccccceEEEeCCCC----CCccCCEEEEEEECCCcCCCCCccccccCC
Confidence 344678888876444444332111 123456665543221 123345799999999999999999998764
No 27
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=92.61 E-value=0.53 Score=37.58 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-=+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 5 RL~kEl~~l~~~~~~~i~~~~~~-----~~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 72 (149)
T 2r0j_A 5 RITKETQNLANEPPPGIMAVPVP-----ENYRHFNILINGPDG----TPYEGGTYKLELFLPEQYPMEPPKVRFLTK 72 (149)
T ss_dssp HHHHHHHHHHHSCCTTEEEEEET-----TEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECC-----CcccEEEEEEECCCC----CCcCCCEEEEEEeCCcccCCCCCeeEeccC
Confidence 34567888876433344332111 012345566543221 123345799999999999999999998764
No 28
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=92.49 E-value=0.77 Score=37.60 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.--+..+...... .....+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 27 RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 27 LLHRDFCDLKENNYKGITAKPVS-----EDMMEWEVEIEGLQN----SVWQGLVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp HHHHHHHHHHHHCCTTEEEEECS-----TTSCEEEEEEECCTT----STTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CccccceeEEECCCC----CCccceEEEEEEECCccCCCCCCcceecCC
Confidence 44568888876544444432211 123466777653221 123345799999999999999999998764
No 29
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=92.33 E-value=0.7 Score=37.54 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+.+.-... ..-..+.+.|.|.+. ....-.+.|.|.||++||..||.|.+...
T Consensus 17 ~RL~kEl~~l~~~~~~gi~~~~~~~----~~l~~w~~~igp~~t-----pyegg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (167)
T 3fn1_B 17 KLLVKEVAELEANLPCTCKVHFPDP----NKLHCFQLTVTPDEG-----YYQGGKFQFETEVPDAYNMVPPKVKCLTK 85 (167)
T ss_dssp HHHHHHHHHHGGGSCTTEEEECSSS----SCTTEEEEEECCSSS-----TTTTCCEEEEEECCTTBTTBCCEEEECSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCC----CcceeEEEEECCCCC-----ccCCCEEEEEEECCCCCCCCCCeeEecCC
Confidence 3456788888875555554431110 112456667755432 23345688999999999999999998764
No 30
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=92.20 E-value=1.2 Score=36.81 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 5 ~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
......|+..|+.--+..+.+..... ..-..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 9 ~kRL~kEl~~l~~~~~~gi~~~~~~~----~nl~~W~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 79 (183)
T 3rz3_A 9 QKALLLELKGLQEEPVEGFRVTLVDE----GDLYNWEVAIFGPPN----TYYEGGYFKARLKFPIDYPYSPPAFRFLTK 79 (183)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECTT----CCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCc----cchhheeeeeeCCCC----CCCCCCeEEEEEECCCCCCCCCCeeEecCC
Confidence 34556788888875555554431110 123466666653221 123345788999999999999999998764
No 31
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=92.15 E-value=1.4 Score=35.60 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.--+..+.+..... ..-..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 7 RL~kEl~~l~~~~~~gi~~~~~~~----~nl~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (164)
T 3h8k_A 7 RLMAEYKQLTLNPPEGIVAGPMNE----ENFFEWEALIMGPED----TCFEFGVFPAILSFPLDYPLSPPKMRFTCE 75 (164)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESST----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC----CCccEEEEEEeCCCC----CCCCCCEEEEEEECCCCCCCCCCEEEEcCC
Confidence 445678888765444444421110 023466666653222 123345788999999999999999998764
No 32
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=92.04 E-value=0.79 Score=36.48 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.--+..+.+..... ..-..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 5 RL~~El~~l~~~~~~~i~~~~~~~----~~l~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (149)
T 1fxt_A 5 RIMKEIQAVKDDPAAHITLEFVSE----SDIHHLKGTFLGPPG----TPYEGGKFVVDIEVPMEYPFKPPKMQFDTK 73 (149)
T ss_dssp HHHHHHHHHHHCGGGCCEEEESSS----SCSSEEEEEEECCSS----STTCSSEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC----CCceEEEEEEECCCC----CCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 445678888764333343321110 012456666653221 123345789999999999999999998763
No 33
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=92.02 E-value=1.1 Score=36.59 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 8 QEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 8 Q~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
...|+..|+.--+..+.+..... ..-..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 22 L~kEl~~l~~~~~~gi~~~p~~~----~nl~~W~~~I~GP~~----TpYegG~f~~~i~fp~~YP~~PP~v~F~T~ 89 (172)
T 2awf_A 22 LRRQLAELNKNPVEGFSAGLIDD----NDLYRWEVLIIGPPD----TLYEGGVFKAHLTFPKDYPLRPPKMKFITE 89 (172)
T ss_dssp HHHHHHHHHHSCCTTEEEEESST----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHhCCCCCEEEEECCC----ccccccEEEEeCCCC----CCcCCcEEEEEEECCcccCCCCCcccccCC
Confidence 34678888775444454421110 012456665543221 123345789999999999999999998764
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=91.33 E-value=0.34 Score=39.28 Aligned_cols=41 Identities=17% Similarity=0.513 Sum_probs=30.3
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|.|.+. ....-.+.|.|.+|++||..||.|.+...
T Consensus 35 ~~w~~~igp~~t-----pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (160)
T 1y8x_A 35 LNFKLVICPDEG-----FYKSGKFVFSFKVGQGYPHDPPKVKCETM 75 (160)
T ss_dssp TEEEEEECCSSS-----TTTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred ceEEEEECCCCC-----CCCCCEEEEEEeCCCcCCCCCCEEEEecC
Confidence 456666754332 23345688999999999999999998764
No 35
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=91.33 E-value=1.6 Score=35.26 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-=+..+....... ..-..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 8 RL~kEl~~l~~~~~~gi~~~~~~~----~~l~~w~~~i~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (165)
T 2ucz_A 8 RLLKELQQLIKDSPPGIVAGPKSE----NNIFIWDCLIQGPPD----TPYADGVFNAKLEFPKDYPLSPPKLTFTPS 76 (165)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESSS----SCCSEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC----CCccEEEEEEECCCC----CCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence 445688888764344444321110 012455655543221 123345789999999999999999998764
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=91.31 E-value=0.33 Score=38.99 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=29.5
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|.|.+. ....-.+.|.|.+|++||..||.|.+...
T Consensus 33 ~~w~~~i~P~~t-----pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (154)
T 1c4z_D 33 LTWQGLIVPDNP-----PYDKGAFRIEINFPAEYPFKPPKITFKTK 73 (154)
T ss_dssp SEEEEEECCCSS-----SCCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred heEEEEEeCCCC-----CccCCeEEEEEEeCCCCCCCCCEEEEeCC
Confidence 456666654332 13345688999999999999999998764
No 37
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=90.89 E-value=0.22 Score=41.40 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+. +.+.+.... ....+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 28 ~RL~kEl~~l~~---~g~~v~~~d------dl~~W~~~I~GP~~----tpYegG~f~l~i~fp~~YP~~PP~V~F~t~ 92 (179)
T 2z5d_A 28 RRMDTDVIKLIE---SKHEVTILG------GLNEFVVKFYGPQG----TPYEGGVWKVRVDLPDKYPFKSPSIGFMNK 92 (179)
T ss_dssp HHHHHHHHHHHH---SSSCEEEEE------ETTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHhcCc---CCCEEEECC------CCceeEEEEECCCC----CCccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence 345678888863 233221110 12456666643221 123345789999999999999999998764
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=90.66 E-value=0.32 Score=40.34 Aligned_cols=41 Identities=17% Similarity=0.513 Sum_probs=30.0
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|.|.+. ....-.+.|.|.+|++||..||.|.+...
T Consensus 55 ~~W~~~igP~~t-----pYegg~f~~~i~fp~~YP~~PP~v~F~t~ 95 (180)
T 2nvu_C 55 LNFKLVICPDEG-----FYKSGKFVFSFKVGQGYPHDPPKVKCETM 95 (180)
T ss_dssp TEEEEEECCCSG-----GGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred cceEEEECCCCC-----CCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence 456666754332 12345688999999999999999998764
No 39
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=90.65 E-value=1 Score=37.44 Aligned_cols=69 Identities=6% Similarity=-0.020 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+...... ..-..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 17 ~RL~kEl~~l~~~~~~~i~~~p~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fP~~YP~~PP~v~f~T~ 85 (187)
T 2f4w_A 17 QRLKQDYLRIKKDPVPYICAEPLP-----SNILEWHYVVRGPEM----TPYEGGYYHGKLIFPREFPFKPPSIYMITP 85 (187)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEET-----TEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcC-----CccceeEEEEeCCCC----CCCCCCEEEEEEEcCCCCCCCCCcccccCC
Confidence 345678888886444444332110 012355566653221 123345789999999999999999998764
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=90.64 E-value=0.5 Score=39.49 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=30.1
Q ss_pred eEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 39 CFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 39 ~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.+.+.|.|.+. ....-.+.|.|.||++||..||.|.+...
T Consensus 65 ~w~~~I~p~~t-----pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 65 KLEVIVRPDEG-----YYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp EEEEEECCSSS-----TTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred eEEEEEcCCCC-----CCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 66777765432 23345688999999999999999998764
No 41
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=90.61 E-value=1.1 Score=37.11 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.-=+..+...... .....+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 33 ~RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 101 (179)
T 1i7k_A 33 KRLQQELMTLMMSGDKGISAFPES-----DNLFKWVGTIHGAAG----TVYEDLRYKLSLEFPSGYPYNAPTVKFLTP 101 (179)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEET-----TEEEEEEEEEEBCTT----STTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcC-----CcccccEEEEECCCC----CCcCCCEEEEEEECCCcCCCCCceEEEecC
Confidence 345668888876433334332110 012345555543221 123345799999999999999999998764
No 42
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=90.55 E-value=0.6 Score=37.48 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 29 ~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 70 (152)
T 2onu_A 29 QDFDVMFHGPNG----TAYEGGIWKVHVTLPDDYPFASPSIGFMNK 70 (152)
T ss_dssp EEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred ceEEEEEECCCC----CcccceEEEEEEcCcccCCCCCCeEEEecC
Confidence 456666653221 123345789999999999999999998764
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=90.49 E-value=1.7 Score=34.96 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhc-CCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAIL-MDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY-~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-- +..+........ ...-..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 25 RL~kEl~~l~~~~~~~~i~~~~~~~~--d~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 25 RLLDELERGQKGNVSEGVSFGLESAD--DITLSNWSCTIFGQPG----TVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp HHHHHHHHHHCC-CCTTEEEEESSTT--CTTCCEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCc--cccceeeEEEEECCCC----CCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 4456888887642 233432211000 0012456666653222 123345789999999999999999998764
No 44
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=90.46 E-value=1.4 Score=35.36 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCceeeccCC-CCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSG-ESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~-~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.==+..+...... ..+ ...-..+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 7 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~-~~nl~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 7 QRLQEERKKWRKDHPFGFYAKPVKKADG-SMDLQKWEAGIPGKEG----TNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEEECTTS-CEEEEEEEEEEECCTT----STTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCC-CCcccEEEEEEECCCC----CCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 345678888876444444332110 000 0011345555543221 123345789999999999999999998754
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=90.34 E-value=0.54 Score=37.06 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhc-CCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAIL-MDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY-~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-- +..+...-.... +..-..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 10 RL~kEl~~l~~~~~~~~~~~~~~~~~--d~nl~~w~~~i~GP~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 10 RLLEELEKGEKGFGPESCSYGLADSD--DITMTKWNGTILGPPH----SNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp HHHHHHHHHHC----CCEEEEESSTT--CTTCCEEEEEEECCSS----STTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCC--CCcceEEEEEEECCCC----CCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 4567888887542 233332211000 0012456666653222 123345789999999999999999998764
No 46
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=89.75 E-value=0.73 Score=37.28 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCceeeccCC-CCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSG-ESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~-~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.--+..+...... ..+ ......+.+.|....+ .......+.|.|.||++||..||.|.+...
T Consensus 10 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~-~~nl~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 10 SRLAQERKAWRKDHPFGFVAVPTKNPDG-TMNLMNWECAIPGKKG----TPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTS-CEEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCC-CCCccEEEEEEECCCC----CCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 445678888886555444332110 000 0012345555543221 123345688999999999999999998764
No 47
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=89.69 E-value=1.8 Score=35.13 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCC-CCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 6 QEQEMEIEALEAILMDEFKEIHSGE-SGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 6 EeQ~eElEALeSIY~de~~~i~~~~-~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.....|+..|+.=-+..+....... .+ ......+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 13 ~RL~kEl~~l~~~~p~gi~~~p~~~~d~-~~nl~~W~~~I~Gp~~----Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 13 TRLQEERKQWRRDHPFGFYAKPCKSSDG-GLDLMNWKVGIPGKPK----TSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTS-SEEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEccCcCC-CCCccEEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3456788888875555544321100 00 0012345556553322 123345788999999999999999998764
No 48
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=89.46 E-value=0.65 Score=38.06 Aligned_cols=41 Identities=15% Similarity=0.374 Sum_probs=29.8
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEec
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~ 82 (258)
..+.+.|....+ .....-.+.|.|.+|++||..||.|.+..
T Consensus 48 ~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t 88 (172)
T 2y9m_A 48 SKWEAIISGPSD----TPYENHQFRILIEVPSSYPMNPPKISFMQ 88 (172)
T ss_dssp TEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECT
T ss_pred hEEEEEEECCCC----CcccCCEEEEEEECCCcCCCCCCEEEEee
Confidence 456666653222 12334579999999999999999999887
No 49
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=89.00 E-value=0.77 Score=37.35 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCc-eeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDE-FKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de-~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.=-++. +...-...+ +..-..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 29 RL~kEl~~l~~~~~~g~~~~~~~~~~--d~~l~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 29 RLLEELEEGQKGVGDGTVSWGLEDDE--DMTLTRWTGMIIGPPR----TIYENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp HHHHHHHHHHSCCTTSSEEEEESSTT--CTTCCEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhCCCCCcEEEEecCCc--cccceeeEEEEECCCC----CCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 4456888887643333 332211100 0002356666653222 123345789999999999999999998765
No 50
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=88.93 E-value=1.5 Score=35.59 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=29.9
Q ss_pred ceEEEEecCCCCCCccCCCC--CceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMP--PVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~--~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|....+. ... .-.+.|.|.||++||..||.|.+...
T Consensus 50 ~~w~~~i~Gp~~t----pye~~gg~f~~~i~fp~~YP~~pP~v~f~t~ 93 (167)
T 4ds2_A 50 YNWILKVKAPADS----VYGGAGNTYQLSVLFSDDYPHEPPTVRFVTP 93 (167)
T ss_dssp TEEEEEEECCTTS----GGGTTCCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred cEEEEEEECCCCC----CccCCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 4666666543221 122 35788999999999999999998764
No 51
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=88.79 E-value=0.78 Score=37.61 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=30.1
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 38 ~~w~~~I~GP~~----tpyegg~f~~~i~fp~~YP~~PP~v~F~t~ 79 (171)
T 1yf9_A 38 AEFWVEFKGPEG----TPYEDGTWMLHVQLPSDYPFKSPSIGFCNR 79 (171)
T ss_dssp TEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred eEEEEEEECCCC----CCccCceEEEEEEcCCCCCCCCCeEEeecC
Confidence 566777653222 123345789999999999999999998753
No 52
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=88.77 E-value=0.74 Score=38.59 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=29.4
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 75 ~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 116 (193)
T 2f4z_A 75 HRWRGFIAGPLG----TPYEGGHFTLDIVIPPDYPYNPPKMKFVTK 116 (193)
T ss_dssp EEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred ceEEEEEeCCCC----CCcCCCEEEEEEECCCcCCCCCCeEEEecC
Confidence 345566643221 123345789999999999999999998764
No 53
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=88.66 E-value=0.77 Score=38.50 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHh---cCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEe
Q 025056 5 VQEQEMEIEALEAI---LMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVK 81 (258)
Q Consensus 5 ~EeQ~eElEALeSI---Y~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~ 81 (258)
......|+..|+.- -+..+.+.... .....+.+.|....+ .....-.+.|.|.+|++||..||.|.+.
T Consensus 7 ~~Rl~kEl~~l~~~~~~~~~~i~~~~~~-----~nl~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~ 77 (201)
T 3k9o_A 7 VQRIKREFKEVLKSEETSKNQIKVDLVD-----ENFTELRGEIAGPPD----TPYEGGRYQLEIKIPETYPFNPPKVRFI 77 (201)
T ss_dssp HHHHHHHHHHHHTCHHHHTTSEEEEECS-----TTSSEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEECC-----CCccEEEEEEECCCC----CCCCCCEEEEEEECCCcCCCCCCccccc
Confidence 34455677777542 12333322111 123466666653222 1233457899999999999999999987
Q ss_pred cC
Q 025056 82 SL 83 (258)
Q Consensus 82 ~~ 83 (258)
..
T Consensus 78 t~ 79 (201)
T 3k9o_A 78 TK 79 (201)
T ss_dssp SC
T ss_pred cC
Confidence 63
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=88.63 E-value=0.22 Score=40.53 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=22.5
Q ss_pred ceEEEEEeeCCCCCCCCCceEEecC
Q 025056 59 VELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 59 ~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.|.|.+|.+||..||.|.+...
T Consensus 85 yeFkLefdiP~tYP~tPPeI~Fp~l 109 (168)
T 3kpa_A 85 YEFEMNFDIPVTYPQAPPEIALPEL 109 (168)
T ss_dssp EEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred eEEEEEEeCCccCCCCCCEeecccc
Confidence 4788999999999999999998764
No 55
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=88.54 E-value=0.31 Score=40.65 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCCCCCCCceEEecC
Q 025056 60 ELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 60 ~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
.+.|.|.||++||..||.|.+..+
T Consensus 90 ~f~l~i~fp~~YP~~PP~V~f~tp 113 (186)
T 1zuo_A 90 YILLNFSFKDNFPFDPPFVRVVLP 113 (186)
T ss_dssp SEEEEEECCTTTTSSCCEEEEEES
T ss_pred EEEEEEECCCCCCCCCCeEEEeCC
Confidence 588999999999999999998765
No 56
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=86.95 E-value=0.31 Score=40.23 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.6
Q ss_pred ceEEEEEeeCCCCCCCCCceEEec
Q 025056 59 VELALIFSHTEKYPDEPPLLNVKS 82 (258)
Q Consensus 59 ~~l~L~f~~p~~YP~~~P~i~l~~ 82 (258)
..+.|.|.+|.+||..||.|.+..
T Consensus 83 y~F~L~~~fPe~YP~~PPeV~F~~ 106 (172)
T 2z6o_A 83 YEFDIEFDIPITYPTTAPEIAVPE 106 (172)
T ss_dssp EEEEEEEECCTTTTTSCCCCBCGG
T ss_pred eEEEEEEECCCCCCCCCCeeeeCC
Confidence 478999999999999999999854
No 57
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=86.53 E-value=1.1 Score=39.06 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=30.0
Q ss_pred ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
..+.+.|....+ .....-.+.|.|.||++||..||.|.+...
T Consensus 90 ~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 90 TELRGEIAGPPD----TPYEGGRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp SEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred cEEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence 466666653221 123345789999999999999999998753
No 58
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=85.97 E-value=3.2 Score=38.37 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.-=+..+...... .....+.+.|.+..+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 7 RL~kEl~~l~~~~~~~~~~~p~~-----~nl~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 74 (399)
T 4ddg_A 7 RIHKELNDLARDPPAQCSAGPVG-----DDMFHWQATIMGPND----SPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 74 (399)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEET-----TEEEEEEEEEECCTT----SSSTTCEEEEEEECCSSTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CcceEEEEEEECCCC----CCCCCCEEEEEEECCcccCCCCcEEEeecc
Confidence 44567888876444444332111 112456666653221 123346788999999999999999988653
No 59
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=85.30 E-value=0.98 Score=37.02 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCc-eeec--cCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEec
Q 025056 6 QEQEMEIEALEAILMDE-FKEI--HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (258)
Q Consensus 6 EeQ~eElEALeSIY~de-~~~i--~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~ 82 (258)
-....|+..|+.=-++. +... .++ +..-..+.+.|....+ .....-.+.|.|.||++||..||.|.+..
T Consensus 38 ~RL~kEl~~l~~~~~~g~~~~~~~~~~----d~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~F~T 109 (170)
T 2hlw_A 38 FRLLEELEEGQKGVGDGTVSWGLEDDE----DMTLTRWTGMIIGPPR----TIYENRIYSLKIECGPKYPEAPPFVRFVT 109 (170)
T ss_dssp HHHHHHHHHHHHCCGGGCEEEEESSTT----CSSCCBEEEEECCCSS----STTSSCCBCEEEECCSSCTTSCCEEEECB
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecCcc----cccceeeEEEEeCCCC----CCcCCcEEEEEEECCCCCCCCCCeeEEec
Confidence 34566888887633333 3221 111 0012356666663221 11233457889999999999999999876
Q ss_pred C
Q 025056 83 L 83 (258)
Q Consensus 83 ~ 83 (258)
.
T Consensus 110 ~ 110 (170)
T 2hlw_A 110 K 110 (170)
T ss_dssp C
T ss_pred c
Confidence 4
No 60
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=83.73 E-value=0.67 Score=39.53 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCceeeccCCCCCCCCCC-ceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSN-QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 7 eQ~eElEALeSIY~de~~~i~~~~~~~~~~~-~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
....|+..|+.--+..+.+.... ... ..+.+.|....+ .....-.+.|.|.+|++||..||.|.+...
T Consensus 6 RL~kEl~~l~~~~~~gi~~~p~~-----~~~l~~w~~~I~GP~~----TpYegG~f~l~i~fP~~YP~~PP~V~F~T~ 74 (215)
T 1tte_A 6 RIMKEIQAVKDDPAAHITLEFVS-----ESDIHHLKGTFLGPPG----TPYEGGKFVVDIEVPMEYPFKPPKMQFDTK 74 (215)
T ss_dssp HHHHHHHHHHTTTCTTCEECCCS-----SSSCCEEEEECCEEEE----ETTEEECCEEEEECCSCSSSCCCEEEETTT
T ss_pred HHHHHHHHHHhCCCCCEEEEECC-----CccccccEEEEeCCCC----CCcCCCEEEEEEeCCccCCCCCCcccccCC
Confidence 44568888876544444432211 011 256666642211 112234578999999999999999998764
No 61
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=83.53 E-value=1.6 Score=39.55 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCce-----eeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEe
Q 025056 7 EQEMEIEALEAILMDEF-----KEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVK 81 (258)
Q Consensus 7 eQ~eElEALeSIY~de~-----~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~ 81 (258)
....|+..|+.=-+..+ ....+. ....+.+.|....+ .....-.+.|.|.||++||..||.|.+.
T Consensus 80 RL~kEl~~L~k~~p~g~~~~i~v~~~ed------nl~~w~~~I~GP~~----TpYegG~F~l~I~fP~dYP~~PP~V~F~ 149 (323)
T 3ceg_A 80 RLAQEAVTLSTSLPLSSSSSVFVRCDEE------RLDIMKVLITGPAD----TPYANGCFEFDVYFPQDYPSSPPLVNLE 149 (323)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEESS------CTTEEEEEEEBCTT----STTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred HHHHHHHHHHhCCCCCcccceeecccCC------CccccEEEEeCCCC----CCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence 34568888876443321 111111 12345555542221 1233457899999999999999999987
Q ss_pred cC
Q 025056 82 SL 83 (258)
Q Consensus 82 ~~ 83 (258)
..
T Consensus 150 T~ 151 (323)
T 3ceg_A 150 TT 151 (323)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 62
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=77.48 E-value=3.6 Score=26.64 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 74 EPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 74 ~~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
..|.|.|....|.+..+...|.+.|.+...+.+|.|
T Consensus 2 ~MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 2 MMPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp CCCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 379999988889999999999999999888877755
No 63
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=75.83 E-value=3.9 Score=27.16 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=29.0
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.|.|.. .|.+.++...|.+.|.....+.+|.+
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~ 33 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGMD 33 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888888 89999999999999999988888754
No 64
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=74.76 E-value=3.8 Score=26.58 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.+.|....|.+.++...|.+.|.+...+.+|.|
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~ 34 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGAS 34 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788887788899999999999999888877754
No 65
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=74.37 E-value=3.9 Score=26.58 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=28.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.+.|....|.+.++...|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p 34 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAP 34 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788877788899999999999999888877754
No 66
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=72.85 E-value=4.4 Score=26.54 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=29.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 75 ~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
.|.|.|....+.+..+...|.+.|.+...+.+|-|
T Consensus 1 MP~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~ 35 (64)
T 3abf_A 1 MVVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEP 35 (64)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 47888887788999999999999999888888753
No 67
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=72.77 E-value=4.4 Score=26.99 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=29.0
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.|.|.-..|.+.++...|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p 34 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTP 34 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788877789999999999999999888877754
No 68
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=72.49 E-value=21 Score=29.61 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=27.5
Q ss_pred CceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecC
Q 025056 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (258)
Q Consensus 37 ~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~ 83 (258)
-.++++++.-.. ...-.|.|.++.+||.++|.+...-+
T Consensus 25 ~~~i~l~~~D~~---------gR~H~l~v~l~~~yp~~~P~~~~DlP 62 (186)
T 3zqs_A 25 FSTIKLKAEDAS---------GREHLITLKLKAKYPAESPDYFVDFP 62 (186)
T ss_dssp SSEEEEEEECTT---------SCEEEEEEECCTTTTTSCCEEECCCS
T ss_pred ccEEEEEEEeCC---------CCeEEEEEEECCCCCCCCCeeEEcCC
Confidence 356677765322 24566899999999999998887654
No 69
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=72.41 E-value=3 Score=34.00 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.1
Q ss_pred ceEEEEEeeCCCCCCCCCceEEec
Q 025056 59 VELALIFSHTEKYPDEPPLLNVKS 82 (258)
Q Consensus 59 ~~l~L~f~~p~~YP~~~P~i~l~~ 82 (258)
..+-|.+.+|.+||..||.+.+..
T Consensus 81 Yn~pi~IwlP~~YP~~PP~v~v~p 104 (162)
T 3r3q_A 81 HSIPVIMWVPSMYPVKPPFISINL 104 (162)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECG
T ss_pred ccccEEEEeCcccCCCCCEEEEEC
Confidence 358889999999999999999864
No 70
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=72.05 E-value=3 Score=33.37 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.6
Q ss_pred ceEEEEEeeCCCCCCCCCceEEec
Q 025056 59 VELALIFSHTEKYPDEPPLLNVKS 82 (258)
Q Consensus 59 ~~l~L~f~~p~~YP~~~P~i~l~~ 82 (258)
..+-|.+.+|.+||..||.+.+..
T Consensus 69 y~iPi~Iwlp~~YP~~pP~vfv~p 92 (146)
T 3obq_A 69 YNIPICLWLLDTYPYNPPICFVKP 92 (146)
T ss_dssp EEEEEEEECCTTTTTSCCEEEECC
T ss_pred ccceEEEEeCccCCCCCCEEEEeC
Confidence 356678999999999999999865
No 71
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=71.64 E-value=4 Score=27.92 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 75 ~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
.|.|.|....|.+.++...|.+.|.+...+.+|.|
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p 35 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALSAAAAAAFDVP 35 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 48888887789999999999999999888877754
No 72
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=69.62 E-value=5.7 Score=26.62 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=28.9
Q ss_pred CceEEecCC---CCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLR---GIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~---gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.|.|.-.. |.+.++...|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p 37 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKN 37 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 778888777 8999999999999999888877754
No 73
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=67.12 E-value=6.6 Score=27.28 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 75 ~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
.|.|.|....|.+.++...|.+.|.+...+.+|.|
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p 35 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGLLRVISEATGEP 35 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 48899888889999999999999999888777754
No 74
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=57.91 E-value=19 Score=32.68 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=35.4
Q ss_pred ceEEEEEeeCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 025056 59 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQE 101 (258)
Q Consensus 59 ~~l~L~f~~p~~YP~~~P~i~l~~~~gL~~~~~~~L~~~L~~~ 101 (258)
-.+.|.+.|+|.+|. +.+.+..+.+|++.+...+++++...
T Consensus 270 G~fklviKy~P~vP~--~KV~V~DPnnLTd~EKekVkeaVKkA 310 (360)
T 3qc5_X 270 GQFKLIIRFRIKTPE--NTVFVNNPNQLTEVEKNLVREAVKKS 310 (360)
T ss_dssp TEEEEEEECCCCCCS--SCEEESCTTSCCHHHHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCCC--cceEecCcccCCHHHHHHHHHHHHHh
Confidence 578899999999995 66788888999999999999988763
No 75
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=53.95 E-value=4.7 Score=36.50 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.2
Q ss_pred CcccHHHHHHHHHHHHHHHH
Q 025056 151 EPVTVETFLAWRERFEAELA 170 (258)
Q Consensus 151 t~vT~E~F~~Wk~~f~~e~~ 170 (258)
..+|.+.|..|++-+..|..
T Consensus 260 A~~s~eey~~F~k~~~~e~~ 279 (335)
T 4fp9_B 260 ACTSVEEFQVFKKLLAREEE 279 (335)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhhhh
Confidence 46788999999998887763
No 76
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=51.64 E-value=21 Score=24.47 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=27.4
Q ss_pred CceEEecCCC-CCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLRG-IQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~g-L~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.|.|.-..| ++.++...|.+.|.+...+.+|.+
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip 35 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSK 35 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788876667 499999999999998888777743
No 77
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=48.06 E-value=27 Score=26.96 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=32.7
Q ss_pred EeeCCCC---CC--CCCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 025056 65 FSHTEKY---PD--EPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (258)
Q Consensus 65 f~~p~~Y---P~--~~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~ 108 (258)
|.+++.| +. ..+.|.|....|-+.++...|.+.|.+.. +.+|.
T Consensus 50 ~~~~~~ylg~~rs~~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~lg~ 97 (136)
T 3mlc_A 50 IIAEDAGLGFQRSPSVVIIHVFTQAGRTIETKQRVFAAITESL-APIGV 97 (136)
T ss_dssp EEECCTTSSCCCCSCCEEEEEEEETTCCHHHHHHHHHHHHHHH-TTTTC
T ss_pred ccccccccCcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHH-HHcCC
Confidence 4566666 22 34677777667899999999999999988 88874
No 78
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=47.57 E-value=24 Score=24.58 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=29.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.+.+.-..|.+.++...|...+.+.+-+.+|.|
T Consensus 1 Pi~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap 34 (70)
T 3ej9_B 1 PFIECHIATGLSVARKQQLIRDVIDVTNKSIGSD 34 (70)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 6677777789999999999999999888888865
No 79
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=41.26 E-value=28 Score=26.32 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=28.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 75 ~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
.|.+.|.-..+.+..+...|.+.|.+...+.+|-|
T Consensus 1 MP~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p 35 (131)
T 2aal_A 1 XPLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVP 35 (131)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48888888888999999999999988877776644
No 80
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=36.01 E-value=28 Score=26.90 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=28.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
|.+.|.-..|.+.+++..|.+.|.+...+.+|.|
T Consensus 1 P~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP 34 (136)
T 3mlc_A 1 PLIRIDLTSDRSREQRRAIADAVHDALVEVLAIP 34 (136)
T ss_dssp CEEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6777777788999999999999988877777654
No 81
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=29.00 E-value=69 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=30.7
Q ss_pred CCceEEecCCC-CCHHHHHHHHHHHHHHHHHhcCch
Q 025056 75 PPLLNVKSLRG-IQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 75 ~P~i~l~~~~g-L~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
.|.+.|.-..| ++.+++..|.+.|.+...+. |.|
T Consensus 22 MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P 56 (161)
T 3c6v_A 22 MPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLP 56 (161)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcC
Confidence 89999987778 69999999999999998888 988
No 82
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=28.56 E-value=87 Score=23.25 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 025056 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (258)
Q Consensus 75 ~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~ 108 (258)
.|.|.|....|.+.++...|.+.|.+...+.+|-
T Consensus 59 ~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~ 92 (128)
T 1mww_A 59 YTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGI 92 (128)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 4677777778899999999999999988887774
No 83
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=28.50 E-value=70 Score=23.84 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=29.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCchHHH
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIY 112 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF 112 (258)
|.|.|....+++..+...|.+.|.+...+.+|.|-=|
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala~~lgkPe~~ 37 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAY 37 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHHHHHCSCCTT
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHhCCCHHH
Confidence 7788877778889889999999988888888766543
No 84
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=27.93 E-value=73 Score=23.05 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCch
Q 025056 72 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (258)
Q Consensus 72 P~~~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~ 109 (258)
++..+.+.|....|.+.++...|.+.|.+...+.+|-+
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 90 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIP 90 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34456777877778999999999999999888888743
No 85
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=26.56 E-value=45 Score=24.94 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 025056 72 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (258)
Q Consensus 72 P~~~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~ 108 (258)
++..|.+.|....|.+.++...|.+.|.+...+.+|-
T Consensus 54 ~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi 90 (125)
T 2wkb_A 54 NEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSV 90 (125)
T ss_dssp CSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCC
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 3446778888777888899999999998888888774
No 86
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=25.61 E-value=49 Score=32.74 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=34.7
Q ss_pred CceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH
Q 025056 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQ 100 (258)
Q Consensus 37 ~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~~gL~~~~~~~L~~~L~~ 100 (258)
|..++|+|.|.. +..|.|.|+-+.+|| .=++.|....+--..++..|++....
T Consensus 85 Pq~~~~~Lr~g~---------~~~f~~~~~~~~~~p--vDly~LmD~S~SM~ddi~~lk~l~~~ 137 (690)
T 3fcs_B 85 PQRIALRLRPDD---------SKNFSIQVRQVEDYP--VDIYYLMDLSYSMKDDLWSIQNLGTK 137 (690)
T ss_dssp SCEEEEEECTTC---------EEEEEEEEECCBTCC--EEEEEEEECSGGGHHHHHHTTTTTHH
T ss_pred CceEEEEeccCC---------cEEEEEEEeccCCCC--ccEEEEecCCcchHHHHHHHHHHHHH
Confidence 668888888743 478999999999999 33444544444444566655544433
No 87
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=25.53 E-value=87 Score=22.74 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.8
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 025056 73 DEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (258)
Q Consensus 73 ~~~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~ 108 (258)
+..+.+.|....|.+.++...|.+.|.+...+.+|-
T Consensus 55 ~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi 90 (115)
T 1uiz_A 55 DPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNI 90 (115)
T ss_dssp SSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 334566777777899999999999999988888874
No 88
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=23.77 E-value=1e+02 Score=23.49 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=30.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCchHH
Q 025056 74 EPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMI 111 (258)
Q Consensus 74 ~~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~mI 111 (258)
..|.+.|....+++..+...|.+.|.+...+.+|-|-=
T Consensus 21 ~MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~ 58 (135)
T 3t5s_A 21 SMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVS 58 (135)
T ss_dssp CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGG
T ss_pred CcceEEEEecCccchhccchhHHHHHHHHHHhhCCchH
Confidence 47999998877888888899999998888777776543
No 89
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.58 E-value=65 Score=23.46 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCchHHH
Q 025056 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIY 112 (258)
Q Consensus 75 ~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF 112 (258)
.|.+.|.-..+++.. ...|.+.|.+...+.+|-|-=|
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~ 37 (115)
T 2xcz_A 1 MPLINIQASVPAVAD-ANSLLQELSSKLAELLGKPEKY 37 (115)
T ss_dssp -CEEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCEEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChHH
Confidence 488888877778888 8889999999888888877543
No 90
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=21.86 E-value=1.5e+02 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=26.0
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~ 108 (258)
+.|.|. ..|.+.++...|.+.|.+...+.+|.
T Consensus 67 ~~I~i~-~~grt~eqK~~l~~~l~~~l~~~lg~ 98 (131)
T 2aal_A 67 VLLTVI-SRPRSEEQKVCFYKLLTGALERDCGI 98 (131)
T ss_dssp EEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 456677 67889999999999998888877774
No 91
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=21.72 E-value=87 Score=22.74 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=27.8
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 025056 73 DEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (258)
Q Consensus 73 ~~~P~i~l~~~~gL~~~~~~~L~~~L~~~~eenlG~ 108 (258)
+..+.+.|....|.+.++...|.+.|.+...+.+|-
T Consensus 55 ~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi 90 (115)
T 2xcz_A 55 EPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGI 90 (115)
T ss_dssp SSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 334566677667789999999999998888887774
No 92
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=21.51 E-value=1.2e+02 Score=21.76 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=28.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHH-HhcCchHHH
Q 025056 76 PLLNVKSLRGIQAGDLKILKEKLEQEAS-ENLGMAMIY 112 (258)
Q Consensus 76 P~i~l~~~~gL~~~~~~~L~~~L~~~~e-enlG~~mIF 112 (258)
|.+.|....+++.. ...|.+.|.+... +.+|-|-=|
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~~~~~l~~~~~gkPe~~ 37 (112)
T 3b64_A 1 PVIQTFVSTPLDHH-KRENLAQVYRAVTRDVLGKPEDL 37 (112)
T ss_dssp CEEEEEESSCCCHH-HHHHHHHHHHHHHHHTSCSCGGG
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHhCCCHHH
Confidence 77788766778888 8889999988888 888876543
No 93
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=21.17 E-value=54 Score=32.45 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH
Q 025056 36 SNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQ 100 (258)
Q Consensus 36 ~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l~~~~gL~~~~~~~L~~~L~~ 100 (258)
.|..++|+|.|.. +..|.|.|+-+.+|| .=++.|....+--..++..|++....
T Consensus 77 ~Pq~~~~~Lr~g~---------~~~f~~~~~~~~~yp--vDly~LmD~S~SM~ddi~~lk~l~~~ 130 (687)
T 3k6s_B 77 SPQKVTLYLRPGQ---------AAAFNVTFRRAKGYP--IDLYYLMDLSYSMLDDLRNVKKLGGD 130 (687)
T ss_dssp BCSCBEEEECTTS---------CEEEEEEECCCCCCC--CEEEEEEECSSTTHHHHHTTTTCCTT
T ss_pred cCcEEEEEEecCC---------eeEEEEEEeccCCCc--eeEEEEEcCCcchHHHHHHHHHHHHH
Confidence 3668889998753 478999999999999 44455555555556666666654433
No 94
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.02 E-value=67 Score=21.16 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 025056 5 VQEQEMEIEALEAILMDE 22 (258)
Q Consensus 5 ~EeQ~eElEALeSIY~de 22 (258)
+.+.++.+..|+++||+-
T Consensus 9 ~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 9 ENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHcccC
Confidence 456778999999999964
Done!