BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025057
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4,
chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
Length = 305
Score = 293 bits (750), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 152/170 (89%)
Query: 39 FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
F+SP+ GS+SSD G +LR + LNP +F SKP+ V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49 FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108
Query: 99 YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168
Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQ
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218
>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR
PE=3 SV=1
Length = 225
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 11/132 (8%)
Query: 88 AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIY 137
A++ PPPDL S L K RIVYLGM S VT+LI+A+ LYLQ++D +KPIY
Sbjct: 15 AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIY 74
Query: 138 LYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 196
YINSTGT+ G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G AA++L +G KG R
Sbjct: 75 FYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYR 134
Query: 197 AALPSSTIMIKQ 208
A+LP +TI++ Q
Sbjct: 135 ASLPHATIVLNQ 146
>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3,
chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
Length = 330
Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Query: 92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGE 150
PPPDL S L RIVY+GM VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+ GE
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177
Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
+G E+E FAIYD + +K + T+CVG A G+A LLL AG KG R +P + MI+Q
Sbjct: 178 TVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQ 235
>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechococcus elongatus (strain PCC 7942) GN=clpR
PE=3 SV=1
Length = 228
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 11/118 (9%)
Query: 102 KNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGE 150
K RI+YLGM S VTELI+A+ LYL++++ EKPIY YINSTGT+ G+
Sbjct: 31 KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 90
Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
+GYETEAFAI D M Y+KPP+ T+C+G A G AA++L G GNRA+LP +TI++ Q
Sbjct: 91 AIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQ 148
>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1,
chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
Length = 387
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 93 PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TKGGEK 151
PPDL S L RI YLGM VP+VTEL++A+F++L Y++ KPIYLYINS GT + E
Sbjct: 169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMET 228
Query: 152 LGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST 203
+G ETEA+AI D + Y K ++T+ G A+G+AA+LL G KG RA P S+
Sbjct: 229 VGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSS 280
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI Q
Sbjct: 71 ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQ 124
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI Q
Sbjct: 71 ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQ 124
>sp|Q8RC25|CLPP_THETN ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=clpP PE=3 SV=2
Length = 195
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI Q
Sbjct: 71 ITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQ 124
>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=clpP PE=3 SV=1
Length = 205
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 79/134 (58%), Gaps = 11/134 (8%)
Query: 75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
P+I MV+ ++ + D+ S L K+RI++LG + V LI+A+ L+L+ ED EK
Sbjct: 2 PLIPMVVEQSN---RGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEK 58
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
I YINS G G T A+YD M Y+KP + T+C+G A ALLL AGAKG
Sbjct: 59 DINFYINSPG--------GVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKG 110
Query: 195 NRAALPSSTIMIKQ 208
R +LP+S IMI Q
Sbjct: 111 KRFSLPNSRIMIHQ 124
>sp|Q2LTK5|CLPP_SYNAS ATP-dependent Clp protease proteolytic subunit OS=Syntrophus
aciditrophicus (strain SB) GN=clpP PE=3 SV=1
Length = 194
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI++LG V LI+A+ L+L+ ED +K I+ Y+N+ G G+
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPG--------GH 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
+ AIYD M Y+KPP+ T+CVG A ALLL AG +G R+ALP S I+I Q
Sbjct: 71 ISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQ 124
>sp|A4XHW0|CLPP_CALS8 ATP-dependent Clp protease proteolytic subunit
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=clpP PE=3 SV=1
Length = 195
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV L + LI+A+ L+L+ ED +K IYLYINS G G
Sbjct: 20 DIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPG--------GS 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ--AGDT 212
T FAIYD + Y+KP + T+CVG A A LL AGAKG R ALP+S IMI Q G
Sbjct: 72 VTAGFAIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVR 131
Query: 213 GICL-LKSSLTWLNSVKLNV 231
G +K W+ +K +
Sbjct: 132 GQATDIKIHAEWILKIKQRI 151
>sp|Q8RHJ8|CLPP_FUSNN ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=clpP PE=3 SV=1
Length = 193
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+++G + +V I+A+ LYL+ ED EK I +YINS G G
Sbjct: 18 DIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T+ AIYD M Y+KP + T+CVG A A LL AGAKG R AL +S IMI Q
Sbjct: 70 VTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
>sp|Q3A3X5|CLPP_PELCD ATP-dependent Clp protease proteolytic subunit OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3
SV=1
Length = 194
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI++LG + V LI+A+ L+L+ ED EK I+LYINS G G
Sbjct: 19 DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG--------GV 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M YV+ P+ TLCVG A A+LL AG +G R ALP + IMI Q
Sbjct: 71 VTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARIMIHQ 124
>sp|B8F822|CLPP_HAEPS ATP-dependent Clp protease proteolytic subunit OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=clpP PE=3 SV=1
Length = 193
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 77/133 (57%), Gaps = 11/133 (8%)
Query: 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKP 135
VI MV+ +S + D+ S L K RI++L + +LI+A+ L+L+ ED EK
Sbjct: 3 VIPMVVEQSSKG---ERAYDIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKD 59
Query: 136 IYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGN 195
IYLYINS G G T AIYD M ++KP + TLC+G A A LL AGAKG
Sbjct: 60 IYLYINSPG--------GVVTAGLAIYDTMNFIKPDVSTLCMGQACSMGAFLLSAGAKGK 111
Query: 196 RAALPSSTIMIKQ 208
R ALP+S +MI Q
Sbjct: 112 RFALPNSRVMIHQ 124
>sp|Q9X5N0|CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus GN=clpP2 PE=3 SV=1
Length = 206
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV LG V +I+A+ L+L+ ED +K I LYINS G G
Sbjct: 21 DIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M YVK P+ T+CVG A A+LL AGAKG R ALPSS IMI Q
Sbjct: 73 VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQ 126
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 76 VITMVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
+I +P T + D+ S L K+RIV+LG V L++A+ L+L+ ED +K
Sbjct: 8 IIDQYVPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDK 67
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
+YLYINS G G T AIYD M Y+K + T+CVG A AA+LL AGAKG
Sbjct: 68 DVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119
Query: 195 NRAALPSSTIMIKQ 208
R ALP++ IMI Q
Sbjct: 120 KRYALPNARIMIHQ 133
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 76 VITMVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
+I +P T + D+ S L K+RIV+LG V L++A+ L+L+ ED +K
Sbjct: 8 IIDQYVPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDK 67
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
+YLYINS G G T AIYD M Y+K + T+CVG A AA+LL AGAKG
Sbjct: 68 DVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119
Query: 195 NRAALPSSTIMIKQ 208
R ALP++ IMI Q
Sbjct: 120 KRYALPNARIMIHQ 133
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 76 VITMVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
+I +P T + D+ S L K+RIV+LG V L++A+ L+L+ ED +K
Sbjct: 8 IIDQYVPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDK 67
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
+YLYINS G G T AIYD M Y+K + T+CVG A AA+LL AGAKG
Sbjct: 68 DVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119
Query: 195 NRAALPSSTIMIKQ 208
R ALP++ IMI Q
Sbjct: 120 KRYALPNARIMIHQ 133
>sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=clpP2 PE=3 SV=1
Length = 218
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 70/105 (66%), Gaps = 6/105 (5%)
Query: 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYD 163
RIVYLG V EL++A+ LYL+ ED KPI +YINS G G+ET AFA+YD
Sbjct: 37 RIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA------GFETSAFAVYD 90
Query: 164 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
M +V+ PI T+C+G A G +ALL+ AG KG R +LP+S I++ Q
Sbjct: 91 TMRHVRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNSRIILYQ 135
>sp|O30612|CLPP2_MYXXD ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1
Length = 203
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 79 MVIPFTSGTAWE-QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M +PF T + DL S L K+RI+ LG V +I+A+ L+L+ ED +K I
Sbjct: 1 MNVPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGIN 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M YVK P+ T+CVG A ALLL AGAKG R
Sbjct: 61 LYINSPG--------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRY 112
Query: 198 ALPSSTIMIKQ 208
ALP+S IMI Q
Sbjct: 113 ALPNSRIMIHQ 123
>sp|Q2RL31|CLPP_MOOTA ATP-dependent Clp protease proteolytic subunit OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1
Length = 199
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 74 SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVE 133
S ++ MV+ TS + D+ S L K+RI++LG + V L++A+ L+L+ ED +
Sbjct: 2 SVLVPMVVEQTS---RGERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPD 58
Query: 134 KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAK 193
K I+LYINS G G + AI+D M Y++P + T+CVG A A LL AGAK
Sbjct: 59 KDIHLYINSPG--------GSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAK 110
Query: 194 GNRAALPSSTIMIKQ 208
G R ALP+S IMI Q
Sbjct: 111 GKRFALPNSEIMIHQ 125
>sp|Q1DAT0|CLPP1_MYXXD ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1
Length = 206
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV LG V +I+A+ L+L+ ED +K I LYINS G G
Sbjct: 21 DIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M YVK P+ T+CVG A A+LL AGAKG R ALPSS IMI Q
Sbjct: 73 VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQ 126
>sp|A0Q2L1|CLPP_CLONN ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi
(strain NT) GN=clpP PE=3 SV=1
Length = 195
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI++LG L++A+ L+L+ ED +K IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M Y+KP + T+C+G A A LL AGAKG R ALP+S IMI Q
Sbjct: 71 ITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQ 124
>sp|B5YI38|CLPP_THEYD ATP-dependent Clp protease proteolytic subunit
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=clpP PE=3 SV=1
Length = 195
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+++G V +++A+ L+LQ ED EK I++YINS G G
Sbjct: 19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG--------GM 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
+ AIYD M YVKP I T C+G A A +LL AG KG R ALP S +MI Q
Sbjct: 71 VSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQ 124
>sp|B3E1Z4|CLPP_GEOLS ATP-dependent Clp protease proteolytic subunit OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP PE=3
SV=1
Length = 197
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K RIV+LG V +L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 18 DIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AI+D M Y+K P+ T+C+G A A+LL AG KG R ALP + IMI Q
Sbjct: 70 VTAGMAIFDTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIHQ 123
>sp|B9DJL4|CLPP_STACT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
carnosus (strain TM300) GN=clpP PE=3 SV=1
Length = 194
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG + +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q49VZ2|CLPP_STAS1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=clpP PE=3 SV=1
Length = 194
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q9K709|CLPP1_BACHD ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=clpP1 PE=3 SV=1
Length = 194
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG + +V I+A+ L+LQ ED +K I LYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M Y+KP + T+C+G A A LL AGAKG R ALP+S +MI Q
Sbjct: 71 ITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQ 124
>sp|Q4L4J5|CLPP_STAHJ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG + +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|B9EAG5|CLPP_MACCJ ATP-dependent Clp protease proteolytic subunit OS=Macrococcus
caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1
Length = 194
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG + +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|A0LEF1|CLPP_SYNFM ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1
Length = 202
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L ++RI++LG + V +I+A+ L+L+ ED +K I+ YINS G G
Sbjct: 19 DIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG--------GL 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T AIYD M ++KP + TLC+G A AA+LL AG KG R ALP IM+ Q
Sbjct: 71 VTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQ 124
>sp|Q8CTE0|CLPP_STAES ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1
Length = 194
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q5HQW0|CLPP_STAEQ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3
SV=1
Length = 194
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|P63786|CLPP_STAAW ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MW2) GN=clpP PE=1 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|A8Z045|CLPP_STAAT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q6GB62|CLPP_STAAS ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MSSA476) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q6GIM3|CLPP_STAAR ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MRSA252) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|P99089|CLPP_STAAN ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain N315) GN=clpP PE=1 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|P63785|CLPP_STAAM ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|A6QF76|CLPP_STAAE ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Newman) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q5HHQ0|CLPP_STAAC ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain COL) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q2YSF8|CLPP_STAAB ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain bovine RF122 / ET3-1) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|A5IQX2|CLPP_STAA9 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain JH9) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q2G036|CLPP_STAA8 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain NCTC 8325) GN=clpP PE=1 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q2FIM5|CLPP_STAA3 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain USA300) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|A6TZP7|CLPP_STAA2 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain JH1) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|A7WZR9|CLPP_STAA1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1
Length = 195
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI Q
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
>sp|Q9K888|CLPP2_BACHD ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=clpP2 PE=3 SV=1
Length = 194
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + + I+A+ L+L+ E+ +K IYLYINS G G
Sbjct: 20 DIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLYINSPG--------GS 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
+ FAIYD M +VKP I T+C G A AA+LL AG KG R ALP+S IMI Q
Sbjct: 72 TSAGFAIYDTMQFVKPSIHTICTGMAASFAAILLLAGTKGKRFALPNSEIMIHQ 125
>sp|B9M0Y1|CLPP_GEOSF ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain FRC-32) GN=clpP PE=3 SV=1
Length = 199
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M++P T + D+ S L K+RI++LG + +V+ L++A+ L+L+ ED +K I+
Sbjct: 1 MLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIH 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M Y+K P+ T+CVG A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRF 112
Query: 198 ALPSSTIMIKQ 208
+L +S IMI Q
Sbjct: 113 SLANSRIMIHQ 123
>sp|A5GFA0|CLPP_GEOUR ATP-dependent Clp protease proteolytic subunit OS=Geobacter
uraniireducens (strain Rf4) GN=clpP PE=3 SV=1
Length = 199
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M++P T + D+ S L K+RIV+LG + +++ L++A+ L+L+ ED +K I+
Sbjct: 1 MLVPIVVEQTGRGERSYDIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIH 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M Y+K P+ T+CVG A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRF 112
Query: 198 ALPSSTIMIKQ 208
+L +S IMI Q
Sbjct: 113 SLTNSRIMIHQ 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,359,582
Number of Sequences: 539616
Number of extensions: 4043021
Number of successful extensions: 10299
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 8791
Number of HSP's gapped (non-prelim): 792
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)