Query 025057
Match_columns 258
No_of_seqs 225 out of 1433
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 5.7E-50 1.2E-54 363.2 15.2 147 75-232 65-216 (275)
2 COG0740 ClpP Protease subunit 100.0 1.3E-46 2.8E-51 331.7 14.7 141 75-226 2-145 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 5.7E-46 1.2E-50 332.0 16.9 162 90-252 17-192 (222)
4 PRK14513 ATP-dependent Clp pro 100.0 4.1E-44 8.8E-49 315.6 17.0 166 76-253 3-171 (201)
5 PRK14514 ATP-dependent Clp pro 100.0 7.9E-44 1.7E-48 317.9 16.8 166 75-252 29-197 (221)
6 CHL00028 clpP ATP-dependent Cl 100.0 1.3E-42 2.8E-47 305.2 16.9 153 91-252 18-174 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 1.5E-42 3.3E-47 304.2 16.2 130 92-229 14-146 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 1.5E-38 3.3E-43 276.5 16.4 164 77-252 3-169 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 3.4E-36 7.4E-41 263.5 16.7 153 91-252 11-166 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 1.1E-35 2.4E-40 260.0 16.4 166 75-252 6-174 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 7.8E-35 1.7E-39 256.1 15.0 141 75-226 10-155 (207)
12 PF00574 CLP_protease: Clp pro 100.0 1.6E-34 3.6E-39 245.2 12.3 152 92-252 5-159 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.7E-33 3.8E-38 239.2 13.4 149 95-252 1-152 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2E-30 4.4E-35 219.5 14.5 140 104-252 1-143 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 99.8 4.9E-20 1.1E-24 153.7 13.8 114 105-231 2-121 (160)
16 cd00394 Clp_protease_like Case 99.7 3.6E-17 7.8E-22 135.6 12.0 98 105-212 1-98 (161)
17 cd07015 Clp_protease_NfeD Nodu 99.7 5.7E-17 1.2E-21 140.2 11.6 96 105-211 3-101 (172)
18 cd07020 Clp_protease_NfeD_1 No 99.6 2.5E-15 5.4E-20 129.4 10.7 96 105-211 3-101 (187)
19 cd07021 Clp_protease_NfeD_like 99.4 1.4E-12 3.1E-17 112.9 12.5 96 105-211 3-98 (178)
20 cd07023 S49_Sppa_N_C Signal pe 98.8 1.2E-08 2.6E-13 88.8 8.6 90 105-204 4-99 (208)
21 TIGR00706 SppA_dom signal pept 98.8 3.1E-08 6.6E-13 86.8 9.2 89 105-204 4-94 (207)
22 COG0616 SppA Periplasmic serin 98.6 8.7E-08 1.9E-12 89.7 8.4 77 118-204 83-161 (317)
23 cd07014 S49_SppA Signal peptid 98.5 7.3E-07 1.6E-11 75.9 10.4 87 116-212 23-112 (177)
24 cd07022 S49_Sppa_36K_type Sign 98.5 1E-06 2.2E-11 77.4 9.5 82 113-204 23-106 (214)
25 PF01972 SDH_sah: Serine dehyd 98.4 1.7E-06 3.7E-11 80.7 9.6 90 109-211 69-158 (285)
26 TIGR00705 SppA_67K signal pept 98.3 1.5E-06 3.3E-11 87.5 8.8 90 105-204 312-411 (584)
27 cd07019 S49_SppA_1 Signal pept 98.3 2.5E-06 5.4E-11 75.0 8.0 79 117-205 23-104 (211)
28 PRK11778 putative inner membra 97.8 0.00011 2.4E-09 70.0 8.9 90 106-207 95-190 (330)
29 cd07018 S49_SppA_67K_type Sign 97.6 0.00013 2.9E-09 64.6 6.9 90 110-210 24-116 (222)
30 PRK10949 protease 4; Provision 97.5 0.00033 7.2E-09 71.5 8.0 89 105-203 330-428 (618)
31 COG1030 NfeD Membrane-bound se 97.5 0.00039 8.5E-09 68.5 7.9 97 104-211 29-128 (436)
32 COG3904 Predicted periplasmic 95.9 0.018 4E-07 52.6 6.2 96 106-214 79-175 (245)
33 TIGR00513 accA acetyl-CoA carb 95.5 0.047 1E-06 52.1 7.3 103 102-211 122-229 (316)
34 PRK12319 acetyl-CoA carboxylas 95.3 0.11 2.5E-06 48.0 8.9 101 102-211 69-176 (256)
35 cd06558 crotonase-like Crotona 95.1 0.12 2.5E-06 43.6 8.0 96 111-210 22-132 (195)
36 CHL00198 accA acetyl-CoA carbo 95.0 0.073 1.6E-06 51.0 7.2 101 102-211 125-232 (322)
37 PRK05724 acetyl-CoA carboxylas 95.0 0.12 2.6E-06 49.4 8.6 107 101-211 121-229 (319)
38 PLN03229 acetyl-coenzyme A car 94.7 0.13 2.8E-06 54.1 8.5 103 102-211 213-320 (762)
39 PLN03230 acetyl-coenzyme A car 94.0 0.19 4.2E-06 49.8 7.7 103 102-211 192-299 (431)
40 TIGR03134 malonate_gamma malon 93.5 0.33 7.1E-06 44.5 7.7 99 112-211 45-148 (238)
41 PRK07511 enoyl-CoA hydratase; 92.4 1.5 3.2E-05 39.4 10.3 92 112-208 27-135 (260)
42 PF00378 ECH: Enoyl-CoA hydrat 92.0 0.66 1.4E-05 41.1 7.5 95 111-211 21-128 (245)
43 PRK06688 enoyl-CoA hydratase; 92.0 1.4 3E-05 39.5 9.5 92 112-208 29-133 (259)
44 TIGR01117 mmdA methylmalonyl-C 90.0 1.5 3.3E-05 44.2 8.6 102 108-211 327-432 (512)
45 TIGR00705 SppA_67K signal pept 90.0 1.1 2.3E-05 45.9 7.5 86 114-209 75-163 (584)
46 PRK05869 enoyl-CoA hydratase; 89.5 3.6 7.7E-05 36.6 9.7 93 112-208 31-136 (222)
47 PRK03580 carnitinyl-CoA dehydr 89.1 2.7 6E-05 37.9 8.8 90 112-206 26-129 (261)
48 PRK06072 enoyl-CoA hydratase; 88.9 3.8 8.3E-05 36.8 9.6 89 112-208 24-126 (248)
49 PRK08258 enoyl-CoA hydratase; 88.8 4 8.8E-05 37.2 9.8 93 112-209 41-151 (277)
50 PRK07260 enoyl-CoA hydratase; 88.5 4.9 0.00011 36.1 10.0 90 112-206 26-133 (255)
51 TIGR03189 dienoyl_CoA_hyt cycl 88.4 4 8.7E-05 36.8 9.4 90 112-206 24-124 (251)
52 PRK10949 protease 4; Provision 88.1 1.5 3.3E-05 45.2 7.3 88 114-211 94-184 (618)
53 PRK07854 enoyl-CoA hydratase; 87.8 3.8 8.3E-05 36.7 8.8 89 112-206 24-121 (243)
54 PRK06210 enoyl-CoA hydratase; 87.7 4.1 8.9E-05 36.9 9.0 93 112-209 30-146 (272)
55 PRK07657 enoyl-CoA hydratase; 87.7 5 0.00011 36.2 9.5 91 112-207 28-133 (260)
56 PRK06495 enoyl-CoA hydratase; 87.4 5 0.00011 36.1 9.4 92 112-208 27-134 (257)
57 PRK06190 enoyl-CoA hydratase; 87.3 5.2 0.00011 36.4 9.5 87 112-206 28-129 (258)
58 PRK06023 enoyl-CoA hydratase; 87.2 3.3 7.1E-05 37.2 8.1 92 112-208 30-134 (251)
59 PRK07468 enoyl-CoA hydratase; 87.2 3.4 7.3E-05 37.4 8.2 90 112-206 29-135 (262)
60 PRK07509 enoyl-CoA hydratase; 86.9 4.5 9.9E-05 36.3 8.8 92 112-208 27-139 (262)
61 PRK05981 enoyl-CoA hydratase; 86.8 4.9 0.00011 36.2 9.0 94 112-209 28-141 (266)
62 PLN02600 enoyl-CoA hydratase 86.7 5.3 0.00012 35.9 9.1 90 112-206 19-123 (251)
63 PRK06143 enoyl-CoA hydratase; 86.6 5.2 0.00011 36.1 9.0 90 112-206 31-135 (256)
64 PRK11423 methylmalonyl-CoA dec 86.5 5.8 0.00013 36.0 9.3 89 112-206 28-131 (261)
65 PRK09674 enoyl-CoA hydratase-i 86.5 4.1 8.8E-05 36.7 8.3 92 112-208 26-129 (255)
66 PRK05995 enoyl-CoA hydratase; 86.2 8.7 0.00019 34.6 10.2 90 112-206 28-134 (262)
67 PRK05864 enoyl-CoA hydratase; 86.2 6.1 0.00013 36.0 9.4 45 160-206 100-144 (276)
68 PRK07110 polyketide biosynthes 86.1 4.3 9.2E-05 36.5 8.2 87 112-206 29-129 (249)
69 PLN02888 enoyl-CoA hydratase 86.0 8 0.00017 35.2 10.0 87 112-206 34-134 (265)
70 PF01039 Carboxyl_trans: Carbo 85.7 1.4 3E-05 44.0 5.3 104 107-212 305-412 (493)
71 PLN03214 probable enoyl-CoA hy 85.6 4 8.6E-05 37.5 7.9 91 111-206 34-142 (278)
72 PRK08138 enoyl-CoA hydratase; 85.5 7.2 0.00016 35.2 9.4 90 112-206 32-133 (261)
73 PLN02664 enoyl-CoA hydratase/d 85.4 5.4 0.00012 36.4 8.6 45 160-206 102-146 (275)
74 PRK09076 enoyl-CoA hydratase; 85.4 6.2 0.00013 35.6 8.9 90 112-206 26-130 (258)
75 TIGR02280 PaaB1 phenylacetate 85.3 7.2 0.00016 35.0 9.3 90 112-206 23-128 (256)
76 TIGR03210 badI 2-ketocyclohexa 85.1 4.8 0.0001 36.3 8.0 90 112-206 26-129 (256)
77 PLN02851 3-hydroxyisobutyryl-C 85.0 6.3 0.00014 38.9 9.4 96 103-206 52-173 (407)
78 PRK08260 enoyl-CoA hydratase; 84.5 6.9 0.00015 36.1 9.0 46 161-208 105-150 (296)
79 PRK08150 enoyl-CoA hydratase; 83.6 7 0.00015 35.3 8.5 88 112-206 26-127 (255)
80 PRK05870 enoyl-CoA hydratase; 83.2 7.8 0.00017 34.8 8.5 92 112-208 27-132 (249)
81 PRK06142 enoyl-CoA hydratase; 83.2 7.8 0.00017 35.1 8.6 91 112-207 30-145 (272)
82 PRK05980 enoyl-CoA hydratase; 83.1 7.9 0.00017 34.8 8.6 90 112-206 27-135 (260)
83 PRK05809 3-hydroxybutyryl-CoA 83.0 9.3 0.0002 34.3 8.9 92 112-208 28-134 (260)
84 PRK07327 enoyl-CoA hydratase; 82.7 10 0.00022 34.4 9.2 90 112-206 36-141 (268)
85 PRK08140 enoyl-CoA hydratase; 82.6 7.6 0.00017 34.9 8.3 90 112-206 28-134 (262)
86 PRK06144 enoyl-CoA hydratase; 82.6 7.9 0.00017 35.1 8.4 90 112-206 32-137 (262)
87 PRK07938 enoyl-CoA hydratase; 82.5 12 0.00026 33.7 9.4 90 112-206 25-129 (249)
88 PLN02988 3-hydroxyisobutyryl-C 82.1 9.3 0.0002 37.2 9.1 87 112-206 33-140 (381)
89 PRK07189 malonate decarboxylas 82.0 5.8 0.00013 37.8 7.5 93 107-210 79-186 (301)
90 PRK08272 enoyl-CoA hydratase; 82.0 11 0.00024 34.9 9.2 44 161-206 119-162 (302)
91 PRK08290 enoyl-CoA hydratase; 82.0 6.9 0.00015 36.2 7.9 44 161-206 110-153 (288)
92 PRK07659 enoyl-CoA hydratase; 81.9 17 0.00037 32.8 10.3 91 112-208 30-135 (260)
93 PRK06563 enoyl-CoA hydratase; 81.9 16 0.00036 32.7 10.1 91 112-207 23-128 (255)
94 PRK07827 enoyl-CoA hydratase; 81.4 12 0.00026 33.7 9.1 90 112-206 30-136 (260)
95 PRK05862 enoyl-CoA hydratase; 81.3 11 0.00024 33.9 8.8 90 112-206 28-129 (257)
96 TIGR01929 menB naphthoate synt 80.8 12 0.00025 33.9 8.8 92 112-208 27-134 (259)
97 TIGR03133 malonate_beta malona 80.7 8.8 0.00019 36.1 8.2 93 107-210 70-177 (274)
98 PRK05617 3-hydroxyisobutyryl-C 80.4 10 0.00023 36.0 8.7 90 112-206 27-135 (342)
99 PRK09245 enoyl-CoA hydratase; 80.3 11 0.00023 34.1 8.4 45 161-207 95-139 (266)
100 PRK05674 gamma-carboxygeranoyl 80.2 13 0.00029 33.7 9.0 90 112-206 30-136 (265)
101 PRK07658 enoyl-CoA hydratase; 80.0 14 0.00029 33.2 8.9 90 112-206 25-129 (257)
102 PRK08139 enoyl-CoA hydratase; 79.5 16 0.00034 33.2 9.2 90 112-206 35-139 (266)
103 PRK08788 enoyl-CoA hydratase; 79.4 9.3 0.0002 35.7 7.9 93 112-206 40-156 (287)
104 PRK09120 p-hydroxycinnamoyl Co 79.3 15 0.00033 33.5 9.2 90 112-206 32-139 (275)
105 PF06833 MdcE: Malonate decarb 79.0 5.8 0.00013 36.7 6.2 81 116-208 51-141 (234)
106 PLN02820 3-methylcrotonyl-CoA 78.9 13 0.00029 38.3 9.4 100 110-211 380-483 (569)
107 PLN02921 naphthoate synthase 78.8 18 0.00038 34.4 9.7 93 112-209 91-199 (327)
108 PRK06494 enoyl-CoA hydratase; 78.8 19 0.00041 32.5 9.4 92 112-208 28-131 (259)
109 PRK08321 naphthoate synthase; 78.7 14 0.0003 34.4 8.8 44 161-206 127-171 (302)
110 PRK12478 enoyl-CoA hydratase; 78.6 11 0.00025 35.0 8.2 47 161-209 104-150 (298)
111 PRK07396 dihydroxynaphthoic ac 77.5 13 0.00028 34.0 8.1 91 112-207 37-143 (273)
112 PRK07112 polyketide biosynthes 77.2 22 0.00047 32.1 9.4 47 160-208 87-133 (255)
113 PLN02157 3-hydroxyisobutyryl-C 76.4 19 0.00042 35.4 9.4 87 112-206 61-168 (401)
114 PLN02874 3-hydroxyisobutyryl-C 76.1 18 0.00039 35.0 9.0 90 112-206 35-140 (379)
115 PRK06213 enoyl-CoA hydratase; 75.5 7.3 0.00016 34.4 5.8 89 112-206 26-127 (229)
116 PRK05654 acetyl-CoA carboxylas 75.1 20 0.00043 33.9 8.8 92 107-210 132-234 (292)
117 PLN02267 enoyl-CoA hydratase/i 75.0 31 0.00067 30.9 9.7 91 112-206 23-130 (239)
118 TIGR03200 dearomat_oah 6-oxocy 74.9 19 0.00041 35.2 8.9 92 112-208 52-161 (360)
119 TIGR00515 accD acetyl-CoA carb 74.9 19 0.00041 34.0 8.6 92 107-210 131-233 (285)
120 COG0825 AccA Acetyl-CoA carbox 74.8 5.8 0.00012 38.2 5.1 106 94-211 118-228 (317)
121 KOG1680 Enoyl-CoA hydratase [L 73.2 11 0.00023 36.0 6.5 97 111-211 60-167 (290)
122 PF01343 Peptidase_S49: Peptid 73.2 6.5 0.00014 32.9 4.6 43 166-210 3-45 (154)
123 PRK07799 enoyl-CoA hydratase; 72.6 20 0.00043 32.3 8.0 90 112-206 29-135 (263)
124 PRK08252 enoyl-CoA hydratase; 72.0 37 0.0008 30.5 9.5 87 112-206 27-126 (254)
125 PRK06127 enoyl-CoA hydratase; 72.0 6.7 0.00015 35.6 4.8 92 112-208 35-143 (269)
126 COG1024 CaiD Enoyl-CoA hydrata 71.1 7.5 0.00016 34.9 4.8 95 111-210 28-137 (257)
127 PRK08259 enoyl-CoA hydratase; 66.5 33 0.00071 31.0 8.0 87 112-206 27-128 (254)
128 TIGR02440 FadJ fatty oxidation 65.4 40 0.00087 35.3 9.4 94 112-210 26-135 (699)
129 TIGR03222 benzo_boxC benzoyl-C 64.9 36 0.00078 34.9 8.7 83 112-201 45-149 (546)
130 TIGR02437 FadB fatty oxidation 63.5 45 0.00097 35.1 9.3 91 112-207 31-138 (714)
131 PRK08184 benzoyl-CoA-dihydrodi 61.2 36 0.00079 34.9 8.0 43 161-205 115-159 (550)
132 PRK11730 fadB multifunctional 60.4 40 0.00086 35.4 8.3 90 112-206 31-137 (715)
133 PF14566 PTPlike_phytase: Inos 56.3 25 0.00055 29.5 5.0 54 102-166 90-149 (149)
134 PRK11154 fadJ multifunctional 56.1 82 0.0018 33.0 9.7 87 112-203 31-133 (708)
135 TIGR01117 mmdA methylmalonyl-C 50.8 59 0.0013 33.0 7.5 97 107-210 93-194 (512)
136 PLN02820 3-methylcrotonyl-CoA 50.0 86 0.0019 32.5 8.6 99 107-209 140-244 (569)
137 TIGR02886 spore_II_AA anti-sig 47.7 82 0.0018 23.9 6.3 75 105-191 11-91 (106)
138 cd07041 STAS_RsbR_RsbS_like Su 47.3 50 0.0011 25.2 5.0 82 104-192 12-94 (109)
139 TIGR02441 fa_ox_alpha_mit fatt 44.8 1.1E+02 0.0024 32.4 8.6 87 112-203 38-140 (737)
140 TIGR03222 benzo_boxC benzoyl-C 44.6 1.3E+02 0.0028 31.0 8.9 94 112-209 295-412 (546)
141 cd01834 SGNH_hydrolase_like_2 44.3 76 0.0017 25.6 6.0 67 103-180 2-72 (191)
142 PF03808 Glyco_tran_WecB: Glyc 39.2 1.3E+02 0.0029 25.6 6.9 74 94-181 34-113 (172)
143 PRK14500 putative bifunctional 38.6 16 0.00035 35.1 1.3 48 156-204 123-181 (346)
144 CHL00174 accD acetyl-CoA carbo 37.8 1.6E+02 0.0035 28.2 7.8 92 107-210 144-247 (296)
145 cd01844 SGNH_hydrolase_like_6 35.8 93 0.002 25.7 5.3 60 104-180 1-68 (177)
146 PF04110 APG12: Ubiquitin-like 35.1 1.1E+02 0.0024 24.2 5.3 70 101-182 15-87 (87)
147 KOG3439 Protein conjugation fa 34.2 1.7E+02 0.0036 24.6 6.4 74 100-182 43-116 (116)
148 PF01039 Carboxyl_trans: Carbo 32.9 50 0.0011 33.1 3.8 94 107-210 68-171 (493)
149 cd01829 SGNH_hydrolase_peri2 S 32.1 1.3E+02 0.0028 24.9 5.6 70 104-181 1-71 (200)
150 COG1366 SpoIIAA Anti-anti-sigm 31.9 1.9E+02 0.0041 22.6 6.3 78 105-191 16-96 (117)
151 cd06844 STAS Sulphate Transpor 30.9 1.7E+02 0.0036 22.2 5.6 39 104-144 10-48 (100)
152 COG4799 Acetyl-CoA carboxylase 27.2 1.5E+02 0.0032 30.7 6.0 102 108-211 336-441 (526)
153 PF13541 ChlI: Subunit ChlI of 26.9 1.4E+02 0.003 24.7 4.8 63 114-178 23-86 (121)
154 cd01825 SGNH_hydrolase_peri1 S 25.8 1.4E+02 0.003 24.3 4.7 17 164-180 51-67 (189)
155 cd01840 SGNH_hydrolase_yrhL_li 25.5 1.6E+02 0.0035 23.8 5.0 59 104-180 1-61 (150)
156 cd01836 FeeA_FeeB_like SGNH_hy 23.0 2.6E+02 0.0056 22.9 5.9 65 104-179 4-77 (191)
157 TIGR00377 ant_ant_sig anti-ant 20.7 3.7E+02 0.0079 20.1 6.3 79 105-191 15-95 (108)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-50 Score=363.22 Aligned_cols=147 Identities=45% Similarity=0.663 Sum_probs=128.1
Q ss_pred Ceee-EEeeec-CCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcc
Q 025057 75 PVIT-MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL 152 (258)
Q Consensus 75 ~~v~-~~i~~~-~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~ 152 (258)
..+| ++++.. +| .++++||||+|||+||||||++|||+++++|++|||||+++|++|||+|||||||
T Consensus 65 ~~~p~~~~~~~~rG---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG-------- 133 (275)
T KOG0840|consen 65 ILVPRFPIESPGRG---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG-------- 133 (275)
T ss_pred ccCCcceeeccccC---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC--------
Confidence 4555 344433 34 3678999999999999999999999999999999999999999999999999999
Q ss_pred ccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHH
Q 025057 153 GYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKL 229 (258)
Q Consensus 153 G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~ 229 (258)
|++++|+||||||+++++||.|+|+|+|||||+|||+||+||+|+++||||+|||||.++ | ..++...++++...+.
T Consensus 134 G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~ 213 (275)
T KOG0840|consen 134 GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKE 213 (275)
T ss_pred CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999985 2 2266666666555554
Q ss_pred HHH
Q 025057 230 NVL 232 (258)
Q Consensus 230 nvy 232 (258)
++.
T Consensus 214 ~l~ 216 (275)
T KOG0840|consen 214 YLN 216 (275)
T ss_pred HHH
Confidence 443
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-46 Score=331.66 Aligned_cols=141 Identities=40% Similarity=0.628 Sum_probs=128.7
Q ss_pred CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057 75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154 (258)
Q Consensus 75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~ 154 (258)
.++|+++|++ ..+++++|||++|+++|||||+++|++.+++.+++||++|+++++.|+|+||||||| |+
T Consensus 2 ~~~~~~~e~~---~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG--------G~ 70 (200)
T COG0740 2 ALVPMVIEQT---SRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GS 70 (200)
T ss_pred CCCccccCcc---cCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC--------cc
Confidence 4688888864 233677999999999999999999999999999999999999999999999999999 89
Q ss_pred HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHH
Q 025057 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNS 226 (258)
Q Consensus 155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~ 226 (258)
|++|+||||+||+++++|+|+|+|+|||||++|++||+||+|+++|||++|||||+++. ..+++.+.+.+..
T Consensus 71 V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~ 145 (200)
T COG0740 71 VTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILK 145 (200)
T ss_pred cchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999843 2378877766553
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=5.7e-46 Score=331.97 Aligned_cols=162 Identities=45% Similarity=0.760 Sum_probs=137.7
Q ss_pred CCCCCChHHhhhcCcEEEeCceeChh----------hHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhhH
Q 025057 90 EQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETEA 158 (258)
Q Consensus 90 ~~~~~Di~s~Ll~eRIIfLgg~Idd~----------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~aG 158 (258)
.++++|++++||++|||||+++|+|+ ++++|++|||||+.+|++++|+||||||||+. +|+.+|+|++|
T Consensus 17 ~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~g 96 (222)
T PRK12552 17 RTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEA 96 (222)
T ss_pred CCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccH
Confidence 34678999999999999999999999 99999999999999999999999999999984 88999999999
Q ss_pred HHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhc
Q 025057 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILS 235 (258)
Q Consensus 159 lAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~ 235 (258)
++|||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++. ..+++...++|+..+..+....
T Consensus 97 laIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iy 176 (222)
T PRK12552 97 FAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEIL 176 (222)
T ss_pred HHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999742 3477777666665544443222
Q ss_pred cccccccCCcchhhhhc
Q 025057 236 LPICSQLGGLKVKQQMS 252 (258)
Q Consensus 236 ~~~~s~l~~~~~~~~~~ 252 (258)
..+++..--+|.+.|+
T Consensus 177 -a~~TG~~~e~I~~d~~ 192 (222)
T PRK12552 177 -SRNTGQTVEKLSKDTD 192 (222)
T ss_pred -HHHHCCCHHHHHHHhc
Confidence 2234444345555554
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.1e-44 Score=315.58 Aligned_cols=166 Identities=33% Similarity=0.475 Sum_probs=136.1
Q ss_pred eeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccH
Q 025057 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (258)
Q Consensus 76 ~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v 155 (258)
++|++++.+. .++++.|+|++||++|||||+++|+++++++|++||+||+++|++++|+||||||| |+|
T Consensus 3 ~~p~~~~~~~---~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG--------G~v 71 (201)
T PRK14513 3 VIPYVIEQTG---RGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GEV 71 (201)
T ss_pred CCCcccccCC---CCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cch
Confidence 4677776442 22456899999999999999999999999999999999999999999999999999 899
Q ss_pred hhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch---hhHHHHHHHHHHHHHHHHHH
Q 025057 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT---GICLLKSSLTWLNSVKLNVL 232 (258)
Q Consensus 156 ~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~---~~~~le~~l~~L~~~~~nvy 232 (258)
++|++|||+|++++++|+|+|+|+|||||++||+||++|+|+++|||++|||||+++ ...+++...++|+..+..+.
T Consensus 72 ~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~ 151 (201)
T PRK14513 72 YAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLV 151 (201)
T ss_pred hhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999974 23466666655554333322
Q ss_pred hhccccccccCCcchhhhhcc
Q 025057 233 ILSLPICSQLGGLKVKQQMSK 253 (258)
Q Consensus 233 il~~~~~s~l~~~~~~~~~~~ 253 (258)
.+ +..+++..--+|.+.|++
T Consensus 152 ~i-ya~~Tg~~~~~I~~~~~r 171 (201)
T PRK14513 152 DI-YHRHTDLPHEKLLRDMER 171 (201)
T ss_pred HH-HHHHHCcCHHHHHHHhcc
Confidence 11 223445554566666653
No 5
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.9e-44 Score=317.87 Aligned_cols=166 Identities=29% Similarity=0.370 Sum_probs=137.3
Q ss_pred CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057 75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154 (258)
Q Consensus 75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~ 154 (258)
.++|++++.+. .+++++|+|++||++|||||+++||+++++++++||+||+.++++++|+||||||| |+
T Consensus 29 ~~~p~~~~~~~---~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG--------Gs 97 (221)
T PRK14514 29 YLNPYILEERQ---LNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GS 97 (221)
T ss_pred cccceeeeeCC---CCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC--------cc
Confidence 47888887542 23567999999999999999999999999999999999999999999999999999 89
Q ss_pred HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHH
Q 025057 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNV 231 (258)
Q Consensus 155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nv 231 (258)
|++|++|||+|++++++|+|+|+|+|||||++||+||++|+|+++|||++|||||+++. ..+++...+.++..+..+
T Consensus 98 v~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i 177 (221)
T PRK14514 98 VYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKEL 177 (221)
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999742 236666666655555444
Q ss_pred HhhccccccccCCcchhhhhc
Q 025057 232 LILSLPICSQLGGLKVKQQMS 252 (258)
Q Consensus 232 yil~~~~~s~l~~~~~~~~~~ 252 (258)
+-.. ...++..--+|.+.|+
T Consensus 178 ~~iy-a~~TG~~~e~I~~~~~ 197 (221)
T PRK14514 178 YTII-ADHSGTPFDKVWADSD 197 (221)
T ss_pred HHHH-HHHHCcCHHHHHHHhh
Confidence 4322 2233333335555443
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=1.3e-42 Score=305.23 Aligned_cols=153 Identities=27% Similarity=0.444 Sum_probs=128.6
Q ss_pred CCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCC
Q 025057 91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP 170 (258)
Q Consensus 91 ~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~ 170 (258)
.++.|+|++||++|||||+++||+++++++++||+||+.+|+.++|+||||||| |+|++|++|||+|+++++
T Consensus 18 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~~~~~ 89 (200)
T CHL00028 18 ATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GSVISGLAIYDTMQFVKP 89 (200)
T ss_pred cccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHHhcCC
Confidence 456899999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch-h---hHHHHHHHHHHHHHHHHHHhhccccccccCCcc
Q 025057 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT-G---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLK 246 (258)
Q Consensus 171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~-~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~ 246 (258)
+|+|+|+|+|||||++||+||+||+|+++|||++|||||+++ . ..+++...++|+..+..+. ..+..+++..--+
T Consensus 90 ~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~-~~ya~~Tg~~~e~ 168 (200)
T CHL00028 90 DVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETIT-RVYAQRTGKPLWV 168 (200)
T ss_pred CEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999975 2 3366666666654443322 2223344444345
Q ss_pred hhhhhc
Q 025057 247 VKQQMS 252 (258)
Q Consensus 247 ~~~~~~ 252 (258)
|.+.|+
T Consensus 169 i~~~~~ 174 (200)
T CHL00028 169 ISEDME 174 (200)
T ss_pred HHHHhh
Confidence 554443
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.5e-42 Score=304.17 Aligned_cols=130 Identities=39% Similarity=0.562 Sum_probs=118.7
Q ss_pred CCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCC
Q 025057 92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP 171 (258)
Q Consensus 92 ~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~ 171 (258)
...|+|++||++|||||+++||+++++++++||+||+++|++++|+||||||| |+|++|++|||+|++++++
T Consensus 14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~~~~~~ 85 (196)
T PRK12551 14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYDGLGIFDTMQHVKPD 85 (196)
T ss_pred cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHHhcCCC
Confidence 45899999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHH
Q 025057 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKL 229 (258)
Q Consensus 172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~ 229 (258)
|+|+|+|+|||||++||++|++|+|+++|||++|||||+++. ..+++...++|+..+.
T Consensus 86 V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~ 146 (196)
T PRK12551 86 VHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKE 146 (196)
T ss_pred EEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999742 3366666555554333
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.5e-38 Score=276.52 Aligned_cols=164 Identities=38% Similarity=0.514 Sum_probs=132.5
Q ss_pred eeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHh
Q 025057 77 ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET 156 (258)
Q Consensus 77 v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~ 156 (258)
+|++++... .++++.|++++||++|+|||+|+|++++++++++||++|+.+++.++|+||||||| |+|+
T Consensus 3 ~p~~~~~~~---~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG--------G~v~ 71 (191)
T TIGR00493 3 IPMVIEQTG---RGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG--------GSIT 71 (191)
T ss_pred CCcccccCC---CCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CCHH
Confidence 565555432 23456899999999999999999999999999999999999999999999999999 8999
Q ss_pred hHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHHHHHh
Q 025057 157 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKLNVLI 233 (258)
Q Consensus 157 aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~nvyi 233 (258)
+|++|||+|++++++|+|+|+|+|||||++|++||++++|+++|||++|||||+++ | ..+++...++++.....+..
T Consensus 72 ~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~ 151 (191)
T TIGR00493 72 AGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLND 151 (191)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999863 2 33666666665544443322
Q ss_pred hccccccccCCcchhhhhc
Q 025057 234 LSLPICSQLGGLKVKQQMS 252 (258)
Q Consensus 234 l~~~~~s~l~~~~~~~~~~ 252 (258)
.. ...++..--+|.+.|+
T Consensus 152 ~y-a~~tg~~~~~i~~~~~ 169 (191)
T TIGR00493 152 IL-ANHTGQSLEQIEKDTE 169 (191)
T ss_pred HH-HHHHCcCHHHHHHHhh
Confidence 22 2223333335555543
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=263.55 Aligned_cols=153 Identities=27% Similarity=0.369 Sum_probs=126.4
Q ss_pred CCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCC
Q 025057 91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP 170 (258)
Q Consensus 91 ~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~ 170 (258)
..+.|++++||++|+|||+|+|++++++.|+++|++|+.+++.++|+||||||| |+|++|++|||+|+++++
T Consensus 11 ~~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~ag~aI~d~i~~~~~ 82 (197)
T PRK14512 11 TGIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKP 82 (197)
T ss_pred CCcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CCHHHHHHHHHHHHhCCC
Confidence 346799999999999999999999999999999999999888999999999999 899999999999999999
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHHHHHhhccccccccCCcch
Q 025057 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKV 247 (258)
Q Consensus 171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~ 247 (258)
+|+|+|.|+|||||++|+++|++++|+++|||++|||||+++ | ..+++...++++.....+.-. +...++..--+|
T Consensus 83 ~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~-~a~~tg~~~~~i 161 (197)
T PRK14512 83 KVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDI-IAKETGQELDKV 161 (197)
T ss_pred CEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHH-HHHHhCcCHHHH
Confidence 999999999999999999999999999999999999999973 2 335666555554333222222 222344443455
Q ss_pred hhhhc
Q 025057 248 KQQMS 252 (258)
Q Consensus 248 ~~~~~ 252 (258)
.+.|+
T Consensus 162 ~~~~~ 166 (197)
T PRK14512 162 EKDTD 166 (197)
T ss_pred HHhhh
Confidence 55544
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.1e-35 Score=260.01 Aligned_cols=166 Identities=37% Similarity=0.541 Sum_probs=133.1
Q ss_pred CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057 75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154 (258)
Q Consensus 75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~ 154 (258)
++||++++.. ...+.++|++++||++|||||+|+|+++++++++++|++|+.+++.++|+||||||| |+
T Consensus 6 ~~~p~~~~~~---~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG--------G~ 74 (200)
T PRK00277 6 NLVPMVIEQT---SRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GS 74 (200)
T ss_pred CCCceeeccC---CCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cc
Confidence 3466666432 122455899999999999999999999999999999999999999999999999999 89
Q ss_pred HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHHHH
Q 025057 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKLNV 231 (258)
Q Consensus 155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~nv 231 (258)
|++|++|||+|++++++|+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++ | ..+++...++++.....+
T Consensus 75 v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~ 154 (200)
T PRK00277 75 VTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRL 154 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999863 2 336666666655444332
Q ss_pred HhhccccccccCCcchhhhhc
Q 025057 232 LILSLPICSQLGGLKVKQQMS 252 (258)
Q Consensus 232 yil~~~~~s~l~~~~~~~~~~ 252 (258)
... +..+++..--+|.+.|+
T Consensus 155 ~~~-~a~~tg~~~~~i~~~~~ 174 (200)
T PRK00277 155 NEI-LAEHTGQPLEKIEKDTD 174 (200)
T ss_pred HHH-HHHHHCcCHHHHHHHhh
Confidence 211 23333443334544443
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=7.8e-35 Score=256.07 Aligned_cols=141 Identities=33% Similarity=0.486 Sum_probs=122.2
Q ss_pred CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057 75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154 (258)
Q Consensus 75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~ 154 (258)
.++|++++..+.. ....||+++||++|+|||+|+|+++++++++++|++++.+++.++|+||||||| |+
T Consensus 10 ~~~p~~~~~~~~~---~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~ 78 (207)
T PRK12553 10 YILPSFIERTSYG---VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG--------GS 78 (207)
T ss_pred CCCCcccccCCCC---CccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--------Cc
Confidence 4677766533222 234899999999999999999999999999999999999998999999999999 89
Q ss_pred HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCC--ch--h-hHHHHHHHHHHHH
Q 025057 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG--DT--G-ICLLKSSLTWLNS 226 (258)
Q Consensus 155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~--~~--~-~~~le~~l~~L~~ 226 (258)
+++|++|||+|++++++|+|+|.|+|+|+|++|++||++|+|+++|||++|||||+ ++ | ..+++...++++.
T Consensus 79 v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~ 155 (207)
T PRK12553 79 VTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILR 155 (207)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 31 2 3355555444443
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.6e-34 Score=245.23 Aligned_cols=152 Identities=30% Similarity=0.428 Sum_probs=124.2
Q ss_pred CCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCC
Q 025057 92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP 171 (258)
Q Consensus 92 ~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~ 171 (258)
.++|||++|+++|+|||+++||+++++.++++|++|+.+++.++|+||||||| |+|++|++|||+|+.++.+
T Consensus 5 ~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG--------G~v~~g~~i~~~i~~~~~~ 76 (182)
T PF00574_consen 5 EWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPG--------GDVDAGLAIYDAIRSSKAP 76 (182)
T ss_dssp EEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE--------BCHHHHHHHHHHHHHSSSE
T ss_pred EEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC--------CccHHHHHHHHHHHhcCCC
Confidence 45899999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch---hhHHHHHHHHHHHHHHHHHHhhccccccccCCcchh
Q 025057 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT---GICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVK 248 (258)
Q Consensus 172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~---~~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~ 248 (258)
|+|+|.|+|+|+|++|+++|++++|++.|||++|+|||+.+ ...+++...++++.....+. ..+..++++.--+|.
T Consensus 77 v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~-~~~~~~tg~~~~~i~ 155 (182)
T PF00574_consen 77 VTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIA-NIYAERTGLSKEEIE 155 (182)
T ss_dssp EEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHH-HHHHHHHTS-HHHHH
T ss_pred eEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHH-HHHHHHhCCcHHHHH
Confidence 99999999999999999999999999999999999999873 23466666666554433322 222233444434555
Q ss_pred hhhc
Q 025057 249 QQMS 252 (258)
Q Consensus 249 ~~~~ 252 (258)
..|+
T Consensus 156 ~~~~ 159 (182)
T PF00574_consen 156 ELMD 159 (182)
T ss_dssp HHCS
T ss_pred HHHh
Confidence 5554
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.7e-33 Score=239.25 Aligned_cols=149 Identities=41% Similarity=0.597 Sum_probs=125.6
Q ss_pred ChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEE
Q 025057 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 95 Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~T 174 (258)
|++++||++|+|||+|+|+++++++++++|++++.+++.++|+||||||| |++++|++|||.|++++.+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG--------G~v~~~~~i~~~l~~~~~~v~t 72 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVST 72 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEE
Confidence 79999999999999999999999999999999999988899999999999 8999999999999999999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhhh
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQM 251 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~~~~ 251 (258)
+|.|+|+|+|++|+++|++|+|++.|||++|||||+++. ..+++...+.++.....+ ...+..++++.--+|.+.|
T Consensus 73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~-~~~~~~~tg~~~~~i~~~~ 151 (171)
T cd07017 73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRL-NEILAKHTGQPLEKIEKDT 151 (171)
T ss_pred EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHh
Confidence 999999999999999999999999999999999999732 234555544444333222 2222334556556777777
Q ss_pred c
Q 025057 252 S 252 (258)
Q Consensus 252 ~ 252 (258)
+
T Consensus 152 ~ 152 (171)
T cd07017 152 D 152 (171)
T ss_pred h
Confidence 4
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.97 E-value=2e-30 Score=219.54 Aligned_cols=140 Identities=27% Similarity=0.347 Sum_probs=115.4
Q ss_pred cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhH
Q 025057 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGE 183 (258)
Q Consensus 104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASm 183 (258)
|+|||+|+|++.++++++++|++|+.+++.++|.||||||| |++++|++|||+|++++.+|+|+|.|+|+|+
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG--------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~ 72 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASM 72 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC--------CcHHHHHHHHHHHHhcCCCceEEEEeehhhH
Confidence 89999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhhhc
Q 025057 184 AALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQMS 252 (258)
Q Consensus 184 AslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~~~~~ 252 (258)
|++|+++|++|+|+++||+++|||||+++. ..+++...++++.....+. .-+..++++.--+|...|+
T Consensus 73 ~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~-~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 73 GSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLV-SAYAHKTGQSEEELHADLE 143 (162)
T ss_pred HHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCcCHHHHHHHHc
Confidence 999999999999999999999999999732 3356655555554444432 2222333433334554443
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.84 E-value=4.9e-20 Score=153.70 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=98.2
Q ss_pred EEEeCceeCh---hhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeeh
Q 025057 105 IVYLGMSFVP---SVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW 181 (258)
Q Consensus 105 IIfLgg~Idd---~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AA 181 (258)
-|||+|+|++ ..++.+.+.|.+++.+ ++|.||||||| |++++|++|||.|+.++.||.|++.|.|+
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspG--------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEEEEcchHH
Confidence 5899999999 7999999999988754 89999999999 89999999999999999999999999999
Q ss_pred hHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHH
Q 025057 182 GEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNV 231 (258)
Q Consensus 182 SmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nv 231 (258)
|+|++|+++|+ +|++.|+++||+|+|+++. ..+++...+++++.....
T Consensus 71 s~g~~ia~a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 121 (160)
T cd07016 71 SAASVIAMAGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESI 121 (160)
T ss_pred hHHHHHHhcCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999996 6999999999999998732 235555555555444433
No 16
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.73 E-value=3.6e-17 Score=135.62 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=93.4
Q ss_pred EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA 184 (258)
+|||.|+|++.+.+++++.|..++.+++.+.|.|++|||| |++.++..|++.|+..+.||.+++.|.|+|+|
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G--------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g 72 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAG 72 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCC--------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHH
Confidence 5899999999999999999999998888899999999999 89999999999999999999999999999999
Q ss_pred HHHHccCCCCCeeecCCceEeEecCCch
Q 025057 185 ALLLGAGAKGNRAALPSSTIMIKQAGDT 212 (258)
Q Consensus 185 slILaAG~kgkR~alPnSriMIHQP~~~ 212 (258)
.+|+++|+ +|++.|++++++|+|+.+
T Consensus 73 ~~la~~~d--~~~~~~~a~~~~~g~~~~ 98 (161)
T cd00394 73 YYIATAAN--KIVMAPGTRVGSHGPIGG 98 (161)
T ss_pred HHHHhCCC--EEEECCCCEEEEeeeEEe
Confidence 99999995 799999999999999873
No 17
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.71 E-value=5.7e-17 Score=140.21 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=85.5
Q ss_pred EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEe---eeeh
Q 025057 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW 181 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~---G~AA 181 (258)
.|-+.|.|++..+..+...|-.-+ +++.+.|.|+||||| |.++++++|||+|++.+.||.|+|. |+|+
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPG--------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~Aa 73 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPG--------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAA 73 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCC--------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeeh
Confidence 466789999888777776665443 456789999999999 8999999999999999999999999 9999
Q ss_pred hHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 182 GEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 182 SmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
|+|++|+++|++ |+|.|+++++.|||..
T Consensus 74 Sag~~I~~a~~~--i~m~p~s~iG~~~pi~ 101 (172)
T cd07015 74 SAGTYIALGSHL--IAMAPGTSIGACRPIL 101 (172)
T ss_pred hHHHHHHHhcCc--eEECCCCEEEEccccc
Confidence 999999999965 9999999999999975
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.62 E-value=2.5e-15 Score=129.43 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=89.4
Q ss_pred EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEe---eeeh
Q 025057 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW 181 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~---G~AA 181 (258)
+|.|.|+|++..++.+..+|..++.+ +.+.|.|+||||| |+++++..||+.|..++.||.+.+. |.|+
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpG--------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aa 73 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPG--------GLLDSTREIVQAILASPVPVVVYVYPSGARAA 73 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCC--------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence 57789999999999999999999854 4789999999999 8999999999999999999999998 9999
Q ss_pred hHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 182 GEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 182 SmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
|+|++|+++|+ .|++.|+++|++|+|..
T Consensus 74 sgG~~iala~D--~iva~p~a~~g~~~~~~ 101 (187)
T cd07020 74 SAGTYILLAAH--IAAMAPGTNIGAAHPVA 101 (187)
T ss_pred hHHHHHHHhCC--ceeECCCCcEEeccccc
Confidence 99999999995 58999999999999985
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.44 E-value=1.4e-12 Score=112.94 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=85.5
Q ss_pred EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA 184 (258)
.|-+.|+|++..+..+...|-....+ +.+.|.|+||||| |.++++..||+.|+..+.||.+++-|.|+|+|
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspG--------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG 73 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPG--------GRVDSALEIVDLILNSPIPTIAYVNDRAASAG 73 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcC--------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHH
Confidence 46788999998888777766555443 4789999999999 89999999999999999999999999999999
Q ss_pred HHHHccCCCCCeeecCCceEeEecCCc
Q 025057 185 ALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 185 slILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
++|+++++ +++|.|+++++.|+|..
T Consensus 74 ~~ia~a~d--~i~m~p~a~iG~~~~v~ 98 (178)
T cd07021 74 ALIALAAD--EIYMAPGATIGAAEPIP 98 (178)
T ss_pred HHHHHhCC--eEEECCCCeEecCeeEc
Confidence 99999995 69999999999999986
No 20
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.84 E-value=1.2e-08 Score=88.80 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=81.3
Q ss_pred EEEeCceeC---hhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEEEEee
Q 025057 105 IVYLGMSFV---PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVG 178 (258)
Q Consensus 105 IIfLgg~Id---d~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~Ti~~G 178 (258)
+|++.|+|+ +.+...+..+|..++.++..+-|.|++|||| |++..+..|++.++.+ +.||.+++.|
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~G--------g~~~~~~~i~~~i~~~~~~~kpvia~v~g 75 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPG--------GSVVASEEIYREIRRLRKAKKPVVASMGD 75 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCC--------CCHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 578899998 7899999999999988778899999999999 7888889999998765 4699999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCceE
Q 025057 179 NAWGEAALLLGAGAKGNRAALPSSTI 204 (258)
Q Consensus 179 ~AASmAslILaAG~kgkR~alPnSri 204 (258)
.|+|.|..|+++++ +|++.|++.+
T Consensus 76 ~~~s~g~~lA~aaD--~i~a~~~s~~ 99 (208)
T cd07023 76 VAASGGYYIAAAAD--KIVANPTTIT 99 (208)
T ss_pred cchhHHHHHHhhCC--EEEECCCCeE
Confidence 99999999999995 6999999988
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.78 E-value=3.1e-08 Score=86.77 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=78.4
Q ss_pred EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC--CCEEEEEeeeehh
Q 025057 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWG 182 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik--~~V~Ti~~G~AAS 182 (258)
+|.|.|+|+ .....+...|-.+..++..+.|.|++|||| |++..+..|++.|+.++ .||.+++.|.|+|
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~G--------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPG--------GTVVASEEIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCC--------CCHHHHHHHHHHHHHhcCCCCEEEEECCccch
Confidence 577888887 456778888887776666789999999999 88999999999999998 8999999999999
Q ss_pred HHHHHHccCCCCCeeecCCceE
Q 025057 183 EAALLLGAGAKGNRAALPSSTI 204 (258)
Q Consensus 183 mAslILaAG~kgkR~alPnSri 204 (258)
.|..|+++++ +|++.|++.+
T Consensus 75 ~g~~la~aaD--~i~a~p~a~v 94 (207)
T TIGR00706 75 GGYYIAMAAD--EIVANPGTIT 94 (207)
T ss_pred HHHHHHhcCC--EEEECCCCeE
Confidence 9999999995 6999999975
No 22
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.65 E-value=8.7e-08 Score=89.69 Aligned_cols=77 Identities=22% Similarity=0.159 Sum_probs=65.5
Q ss_pred HHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCC--CEEEEEeeeehhHHHHHHccCCCCC
Q 025057 118 ELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP--PIFTLCVGNAWGEAALLLGAGAKGN 195 (258)
Q Consensus 118 ~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~--~V~Ti~~G~AASmAslILaAG~kgk 195 (258)
..+.+.|-.+...++.+.|-|.||||| |+|.+..-||+.++.++. ||+..+-++|||.|-+|.|+++ +
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~inSPG--------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd--~ 152 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRINSPG--------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAAD--K 152 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECcC--------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCC--E
Confidence 334444444556677899999999999 899999999999999887 5999999999999999999995 6
Q ss_pred eeecCCceE
Q 025057 196 RAALPSSTI 204 (258)
Q Consensus 196 R~alPnSri 204 (258)
.+|-|+|.+
T Consensus 153 I~a~p~si~ 161 (317)
T COG0616 153 IVADPSSIT 161 (317)
T ss_pred EEecCCcee
Confidence 899999964
No 23
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.54 E-value=7.3e-07 Score=75.87 Aligned_cols=87 Identities=20% Similarity=0.109 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhc---cCCCEEEEEeeeehhHHHHHHccCC
Q 025057 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGA 192 (258)
Q Consensus 116 ~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~---ik~~V~Ti~~G~AASmAslILaAG~ 192 (258)
..+.+...|..++.++..+-|.|.+|||| |++.....+++.++. .+.||...+-|.|+|.|..|+++++
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~g--------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D 94 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN 94 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC
Confidence 46778888888877777788999999999 777777777776654 4679999999999999999999995
Q ss_pred CCCeeecCCceEeEecCCch
Q 025057 193 KGNRAALPSSTIMIKQAGDT 212 (258)
Q Consensus 193 kgkR~alPnSriMIHQP~~~ 212 (258)
.|++.|+++|++|..+.+
T Consensus 95 --~i~a~~~a~~~~~G~~~~ 112 (177)
T cd07014 95 --YIVANPSTLVGSIGIFGV 112 (177)
T ss_pred --EEEECCCCeEEEechHhh
Confidence 699999999999987753
No 24
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.46 E-value=1e-06 Score=77.43 Aligned_cols=82 Identities=22% Similarity=0.214 Sum_probs=72.9
Q ss_pred ChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC--CCEEEEEeeeehhHHHHHHcc
Q 025057 113 VPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGA 190 (258)
Q Consensus 113 dd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik--~~V~Ti~~G~AASmAslILaA 190 (258)
+......+++.|..++.++.-+-|.|.+|||| |++.....|++.|+.++ .||.+++.|.|+|.|..|+++
T Consensus 23 ~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g--------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~ 94 (214)
T cd07022 23 GLTSYEGIAAAIRAALADPDVRAIVLDIDSPG--------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASA 94 (214)
T ss_pred CcccHHHHHHHHHHHhhCCCCcEEEEEEeCCC--------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhc
Confidence 34567888988988887777889999999999 78888889999999887 899999999999999999999
Q ss_pred CCCCCeeecCCceE
Q 025057 191 GAKGNRAALPSSTI 204 (258)
Q Consensus 191 G~kgkR~alPnSri 204 (258)
++ ++++.|++++
T Consensus 95 aD--~i~a~~~a~~ 106 (214)
T cd07022 95 AD--RIVVTPTAGV 106 (214)
T ss_pred CC--EEEEcCCCeE
Confidence 95 6999999995
No 25
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.39 E-value=1.7e-06 Score=80.75 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=75.9
Q ss_pred CceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHH
Q 025057 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 188 (258)
Q Consensus 109 gg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslIL 188 (258)
...|+.+.++.+...+-.. +++++|.|.||+|| |.+.++..|.+.++..+.+|..++-..|.|+|++|.
T Consensus 69 ~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpG--------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIA 137 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPG--------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIA 137 (285)
T ss_pred ceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCC--------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHH
Confidence 3457878888887776533 44678999999999 899999999999999999999999999999999999
Q ss_pred ccCCCCCeeecCCceEeEecCCc
Q 025057 189 GAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 189 aAG~kgkR~alPnSriMIHQP~~ 211 (258)
++++ +-+|.|+|.+===.|..
T Consensus 138 LaAD--eIvM~p~a~LGpiDPqi 158 (285)
T PF01972_consen 138 LAAD--EIVMGPGAVLGPIDPQI 158 (285)
T ss_pred HhCC--eEEECCCCccCCCCccc
Confidence 9995 57899999876545543
No 26
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.34 E-value=1.5e-06 Score=87.53 Aligned_cols=90 Identities=19% Similarity=0.110 Sum_probs=75.3
Q ss_pred EEEeCceeChh-------hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEE
Q 025057 105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFT 174 (258)
Q Consensus 105 IIfLgg~Idd~-------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~T 174 (258)
+|++.|+|.+. ..+.+..+|..+..++.-+.|.|+||||| |+++++-.|++.|+.. ..||.+
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpG--------Gs~~ase~i~~~i~~~~~~gKPVva 383 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPG--------GSVFASEIIRRELARAQARGKPVIV 383 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 78999999752 24566666666655556689999999999 8899999999999754 368999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTI 204 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSri 204 (258)
.+.|.|+|.|-.|.++|+ ++++.|++.+
T Consensus 384 ~~~g~aaSggY~iA~aaD--~I~a~p~t~~ 411 (584)
T TIGR00705 384 SMGAMAASGGYWIASAAD--YIVASPNTIT 411 (584)
T ss_pred EECCccccHHHHHHHhCC--EEEECCCCee
Confidence 999999999999999995 6999999987
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.29 E-value=2.5e-06 Score=74.98 Aligned_cols=79 Identities=20% Similarity=0.144 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhc---cCCCEEEEEeeeehhHHHHHHccCCC
Q 025057 117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGAK 193 (258)
Q Consensus 117 a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~---ik~~V~Ti~~G~AASmAslILaAG~k 193 (258)
...+...|-.++.++.-+-|.|.+|||| |++.+...+++.|+. .+.||.+.+.|.|+|.|..|.++++
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD- 93 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN- 93 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEEcCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC-
Confidence 4678888888877766799999999999 788888888887654 5679999999999999999999995
Q ss_pred CCeeecCCceEe
Q 025057 194 GNRAALPSSTIM 205 (258)
Q Consensus 194 gkR~alPnSriM 205 (258)
++++.|++++-
T Consensus 94 -~i~a~~~a~~g 104 (211)
T cd07019 94 -YIVANPSTLTG 104 (211)
T ss_pred -EEEEcCCCEEE
Confidence 69999998874
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.77 E-value=0.00011 Score=70.04 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=61.5
Q ss_pred EEeCceeChhhHHHH---HHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhH---HHHHHHhhccCCCEEEEEeee
Q 025057 106 VYLGMSFVPSVTELI---LAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA---FAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 106 IfLgg~Idd~~a~~i---iaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aG---lAIYDtm~~ik~~V~Ti~~G~ 179 (258)
|.+.|+|+...+..+ +..++... .+.+.|.|.||||| |+|... ......++..+.||++...++
T Consensus 95 I~~~G~I~~~~~~~l~e~i~a~l~~A--~~~~aVvLridSpG--------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~ 164 (330)
T PRK11778 95 LDFKGDIDASEVESLREEITAILAVA--KPGDEVLLRLESPG--------GVVHGYGLAASQLQRLRDAGIPLTVAVDKV 164 (330)
T ss_pred EEEEEEECCCcchhhHHHHHHHHHhc--cCCCeEEEEEeCCC--------CchhHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 345688876544333 22233222 23367999999999 677653 222334555567999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057 180 AWGEAALLLGAGAKGNRAALPSSTIMIK 207 (258)
Q Consensus 180 AASmAslILaAG~kgkR~alPnSriMIH 207 (258)
|||.|=+|.|+++ +-++.|.+.+-..
T Consensus 165 AASggY~iAsaAD--~I~A~P~a~vGSI 190 (330)
T PRK11778 165 AASGGYMMACVAD--KIIAAPFAIVGSI 190 (330)
T ss_pred hhhHHHHHHHhCC--EEEECCCCeEEee
Confidence 9999999999995 5799999876543
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.64 E-value=0.00013 Score=64.56 Aligned_cols=90 Identities=13% Similarity=0.050 Sum_probs=75.0
Q ss_pred ceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEEEEeeeehhHHHH
Q 025057 110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAAL 186 (258)
Q Consensus 110 g~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~Ti~~G~AASmAsl 186 (258)
..-+......++..|-.+..++.-+-|.|.||||| |.+.+.-.|++.|+.. ..||.++..| |+|.|-.
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~ 94 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYY 94 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhh
Confidence 34456678889999998887777899999999999 7788889999999754 4689988887 8888889
Q ss_pred HHccCCCCCeeecCCceEeEecCC
Q 025057 187 LLGAGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 187 ILaAG~kgkR~alPnSriMIHQP~ 210 (258)
|.++++ ++++.|++.+.+.-..
T Consensus 95 lasaad--~I~a~p~~~vg~iGv~ 116 (222)
T cd07018 95 LASAAD--EIYLNPSGSVELTGLS 116 (222)
T ss_pred hhhhCC--EEEECCCceEEeeccc
Confidence 999985 6899999999997543
No 30
>PRK10949 protease 4; Provisional
Probab=97.47 E-value=0.00033 Score=71.53 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=72.9
Q ss_pred EEEeCceeChh-------hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEE
Q 025057 105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFT 174 (258)
Q Consensus 105 IIfLgg~Idd~-------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~T 174 (258)
+|++.|.|.+. ..+.++.+|-....++.-|-|-|.||||| |++.+.-.|++.|+.. ..||..
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpG--------Gs~~ase~i~~~i~~~r~~gKPVva 401 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVV 401 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCC--------CcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 46677777542 24567788877777778899999999999 8899999999999755 368998
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCce
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSST 203 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSr 203 (258)
..-|+|||.|=.|.++++ +-++.|.+.
T Consensus 402 s~~~~aASggY~iA~aad--~I~a~p~t~ 428 (618)
T PRK10949 402 SMGGMAASGGYWISTPAN--YIVASPSTL 428 (618)
T ss_pred EECCCCccHHHHHHHhcC--EEEECCCCc
Confidence 888999999999999995 578889764
No 31
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00039 Score=68.52 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=81.1
Q ss_pred cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEee---ee
Q 025057 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG---NA 180 (258)
Q Consensus 104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G---~A 180 (258)
.++.+.|+|++.+++.+...|-.-+.++ ..-+-+.+|.|| |-+++...|...+...+.||..++.= .|
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPG--------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~A 99 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEEN-AAAVVLELDTPG--------GLLDSMRQIVRAILNSPVPVIGYVVPDGARA 99 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCC--------chHHHHHHHHHHHHcCCCCEEEEEcCCCcch
Confidence 3567899999999999998887554433 478999999999 88999999999999999998777653 69
Q ss_pred hhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 181 WGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 181 ASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
||+|+.|+++.+. -+|.|.+.+==-||-.
T Consensus 100 aSAGtyI~m~~hi--aaMAPgT~iGaa~Pi~ 128 (436)
T COG1030 100 ASAGTYILMATHI--AAMAPGTNIGAATPIA 128 (436)
T ss_pred hchhhHHHHhcCh--hhhCCCCcccccceec
Confidence 9999999999964 5788998887777754
No 32
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=95.93 E-value=0.018 Score=52.64 Aligned_cols=96 Identities=15% Similarity=0.034 Sum_probs=73.2
Q ss_pred EEeCceeChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057 106 VYLGMSFVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (258)
Q Consensus 106 IfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA 184 (258)
|-+.+++-+.-+....+.|.. .....-+. +-+|||| |+|.++++.=-.++..+-++..-...+|+|.-
T Consensus 79 VvVse~~a~~da~sal~~lir---~~G~y~~t~v~lnSpG--------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaC 147 (245)
T COG3904 79 VVVSEPGANVDAASALGRLIR---KAGLYIATGVTLNSPG--------GSVAKACSMGKLIREDGFDTAVDSGAMCASAC 147 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHh---ccCceeEEEEEecCCC--------CcHHHHHhhhhhhhhcccCccccchhhhhccc
Confidence 344555544444445555552 12223344 6789999 89999999999999998888888888999999
Q ss_pred HHHHccCCCCCeeecCCceEeEecCCchhh
Q 025057 185 ALLLGAGAKGNRAALPSSTIMIKQAGDTGI 214 (258)
Q Consensus 185 slILaAG~kgkR~alPnSriMIHQP~~~~~ 214 (258)
.++|++| ..|++-+.+.|=+||+..++.
T Consensus 148 pl~fagG--vrRvve~~ayiGVHq~~~~g~ 175 (245)
T COG3904 148 PLMFAGG--VRRVVEDFAYIGVHQITTTGR 175 (245)
T ss_pred hhhhhcc--eeeeecccceeeeeeccccCC
Confidence 9999999 569999999999999998653
No 33
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=95.47 E-value=0.047 Score=52.09 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=73.9
Q ss_pred cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHh---hccCCCEEEEE
Q 025057 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLC 176 (258)
Q Consensus 102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm---~~ik~~V~Ti~ 176 (258)
++|+-..+|-++++....... |..|... -.-||--+||+||.-.+ -|..|. +-+|...+ ...+.|+.+++
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~~-f~iPvVtlvDTpGa~~g~~aE~~G~---~~aia~~l~a~s~~~VP~IsVV 196 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALR-LMKMAER-FKMPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLGVPVICTV 196 (316)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEECCCCCCCHHHHHHHH---HHHHHHHHHHHHcCCCCEEEEE
Confidence 567667778888877766654 4444433 35799999999994321 111122 23454444 56678999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
+|-++|.|++.++.+ +..+|+||+.+.+=.|.+
T Consensus 197 iGeggsGGAla~~~a--D~v~m~~~a~~sVisPEg 229 (316)
T TIGR00513 197 IGEGGSGGALAIGVG--DKVNMLEYSTYSVISPEG 229 (316)
T ss_pred ecccccHHHhhhccC--CEEEEecCceEEecCHHH
Confidence 999999999888767 468999999999998886
No 34
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=95.26 E-value=0.11 Score=47.98 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=73.4
Q ss_pred cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHh--h--HHHHHHHh---hccCCCEEE
Q 025057 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET--E--AFAIYDVM---GYVKPPIFT 174 (258)
Q Consensus 102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~--a--GlAIYDtm---~~ik~~V~T 174 (258)
++++...+|-++++-...... +..|..+. .-||--.+||||.-. |... . +-+|...+ ...+.|+.+
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R-~~~lA~~~-~lPvV~lvDtpGa~~-----g~~aE~~G~~~~ia~~~~~~s~~~VP~Is 141 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALR-LMKQAEKF-GRPVVTFINTAGAYP-----GVGAEERGQGEAIARNLMEMSDLKVPIIA 141 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCC-----CHhHHhccHHHHHHHHHHHHhCCCCCEEE
Confidence 566666778888887666654 54454333 579999999999432 2211 1 23444443 455789999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
+++|-++|.|++.++.+ +..+|.|++.+.+=.|.+
T Consensus 142 VI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe~ 176 (256)
T PRK12319 142 IIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPEG 176 (256)
T ss_pred EEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHHH
Confidence 99999999999999877 468999999999998876
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=95.13 E-value=0.12 Score=43.60 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=65.6
Q ss_pred eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-C-------------ccccHhhHHHHHHHhhccCCCEEEE
Q 025057 111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-E-------------KLGYETEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~-------------~~G~v~aGlAIYDtm~~ik~~V~Ti 175 (258)
.++.++.+++...|..++.++..+ -+.|.+.|+.. .| . ....+.....++..+...+.||.+.
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~--~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~ 99 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVR--VVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAA 99 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 357788888888888777533333 23333333211 11 0 0012334466677777889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~ 210 (258)
+-|.|.+.|+.+++++ +.|++.++++|.+..+.
T Consensus 100 v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~ 132 (195)
T cd06558 100 VNGAALGGGLELALAC--DIRIAAEDAKFGLPEVK 132 (195)
T ss_pred ECCeeecHHHHHHHhC--CEEEecCCCEEechhhh
Confidence 9999999999999998 57999999999887643
No 36
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=95.04 E-value=0.073 Score=50.97 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=73.1
Q ss_pred cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc--Hh--hHHHHHHH---hhccCCCEEE
Q 025057 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY--ET--EAFAIYDV---MGYVKPPIFT 174 (258)
Q Consensus 102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~--v~--aGlAIYDt---m~~ik~~V~T 174 (258)
++|+-..+|-.+++....... +..|.... .-||--+|++||.-. |. .. .+-+|... |...+.|+.+
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~R-lm~lA~~f-~lPIItlvDTpGA~~-----G~~AE~~G~~~aiar~l~~~a~~~VP~Is 197 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALR-LMKHANKF-GLPILTFIDTPGAWA-----GVKAEKLGQGEAIAVNLREMFSFEVPIIC 197 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCc-----CHHHHHHhHHHHHHHHHHHHHcCCCCEEE
Confidence 566545567788877776664 44444332 579999999999432 21 11 13345544 4567789999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
+++|-++|.|++.++.+ +..+|++||.+.+=.|.+
T Consensus 198 VViGeggsGGAlal~~a--D~V~m~e~a~~sVisPEg 232 (322)
T CHL00198 198 TIIGEGGSGGALGIGIG--DSIMMLEYAVYTVATPEA 232 (322)
T ss_pred EEeCcccHHHHHhhhcC--CeEEEeCCeEEEecCHHH
Confidence 99999999999888877 568999999999999976
No 37
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=95.03 E-value=0.12 Score=49.44 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=75.3
Q ss_pred hcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHhhccCCCEEEEEee
Q 025057 101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (258)
Q Consensus 101 l~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G 178 (258)
.++++-..+|-++++....... +..+... -.-||--.|++||.-.+ -|.-|...++......|...+.|+.++++|
T Consensus 121 ~~e~~~~~~G~~~peg~rKa~R-~m~lA~~-f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG 198 (319)
T PRK05724 121 TKEKIRRNFGMPRPEGYRKALR-LMKMAEK-FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG 198 (319)
T ss_pred ccccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 4777777888898887766654 4444332 35799999999994321 011122222223344445777899999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 179 ~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
-++|.|++.++.+ +..+|+|++.+.+=.|.+
T Consensus 199 eg~sGGAla~~~a--D~v~m~~~A~~svisPEg 229 (319)
T PRK05724 199 EGGSGGALAIGVG--DRVLMLEYSTYSVISPEG 229 (319)
T ss_pred CccHHHHHHHhcc--CeeeeecCceEeecCHHH
Confidence 9999999888877 458999999999988876
No 38
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.71 E-value=0.13 Score=54.12 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=72.1
Q ss_pred cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHh---hccCCCEEEEE
Q 025057 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLC 176 (258)
Q Consensus 102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm---~~ik~~V~Ti~ 176 (258)
++|+-..+|-.+++-...... |..+... -.-||--+|++||.-.+ -|..|. +-+|...+ -....|+.+++
T Consensus 213 ke~~~rnfG~~~peGyRKAlR-lmkLAek-fgLPIVtLVDTpGA~pG~~AEe~Gq---~~aIArnl~amasl~VP~ISVV 287 (762)
T PLN03229 213 KENIMRNFGMPTPHGYRKALR-MMYYADH-HGFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIVSIV 287 (762)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEECCCcCCCchhHHHhH---HHHHHHHHHHHhCCCCCEEEEE
Confidence 555666677777776665554 4444332 25799999999995321 111222 33454444 46678999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
+|-++|.|++.++.++ ..+|+||+.+.+=-|.+
T Consensus 288 iGeggSGGAlA~g~aD--~VlMle~A~~sVisPEg 320 (762)
T PLN03229 288 IGEGGSGGALAIGCAN--KLLMLENAVFYVASPEA 320 (762)
T ss_pred eCCcchHHHHHhhcCC--EEEEecCCeEEecCHHH
Confidence 9999999999998884 58999999999888876
No 39
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=94.04 E-value=0.19 Score=49.84 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHh--hHHHHHHHh---hccCCCEEEEE
Q 025057 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET--EAFAIYDVM---GYVKPPIFTLC 176 (258)
Q Consensus 102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~--aGlAIYDtm---~~ik~~V~Ti~ 176 (258)
++|+--..|-++++-...... |+.|... -.-||--+||+||...+- +... .+-+|...+ ...+.|+.+++
T Consensus 192 ke~~~rnfG~~~peGyRKAlR-~mklAek-f~lPIVtLVDTpGA~pG~---~AEe~Gqa~aIAr~l~ams~l~VPiISVV 266 (431)
T PLN03230 192 KENIYRNFAMPQPNGYRKALR-FMRHAEK-FGFPILTFVDTPGAYAGI---KAEELGQGEAIAFNLREMFGLRVPIIATV 266 (431)
T ss_pred ccccccCCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCCCcCCCH---HHHHHhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 344333346777877766664 4434332 257999999999943210 1111 123455444 46678999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
+|-++|.|++.+++|+ ..+|+||+.+.+=.|.+
T Consensus 267 iGeGgSGGAlalg~aD--~VlMle~A~ysVisPEg 299 (431)
T PLN03230 267 IGEGGSGGALAIGCGN--RMLMMENAVYYVASPEA 299 (431)
T ss_pred eCCCCcHHHHHhhcCC--EEEEecCCEEEecCHHH
Confidence 9999999999998884 68999999999988875
No 40
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=93.47 E-value=0.33 Score=44.51 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=62.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHH---HHHHhhccCCCEEEEEeeeehhHHHH
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFA---IYDVMGYVKPPIFTLCVGNAWGEAAL 186 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlA---IYDtm~~ik~~V~Ti~~G~AASmAsl 186 (258)
++-+-+.....-+...-..+...||-..+++||-.. .-|..|-.-++-. -|..++..+.|+.++++|.+.|.|.+
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 443344444433333211235789999999999542 2233343333333 33444455599999999999998877
Q ss_pred HHccCCCCCeeecCCceEeEecCCc
Q 025057 187 LLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 187 ILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
-+..+ .+..+++|++.+-.=.|.+
T Consensus 125 amg~~-ad~v~Alp~A~i~vm~~e~ 148 (238)
T TIGR03134 125 AHGLQ-ADRIIALPGAMVHVMDLES 148 (238)
T ss_pred HHccC-cCeEEEcCCcEEEecCHHH
Confidence 77533 2578999999988877765
No 41
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=92.40 E-value=1.5 Score=39.44 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc---------------HhhHHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY---------------ETEAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~---------------v~aGlAIYDtm~~ik~~V~T 174 (258)
++.++..++.+.|-.++.+ +++. |.|.+.|... .|-.+.. ......+++.|...+.||..
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIA 103 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERD---PSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIA 103 (260)
T ss_pred CCHHHHHHHHHHHHHhccC---CCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 6778888888888776643 3343 4445544321 2211110 11113466777888999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
.+-|.|.+.|..|++++ +.|++.++++|-+..
T Consensus 104 av~G~a~GgG~~lala~--D~~ia~~~a~f~~pe 135 (260)
T PRK07511 104 AVEGAAAGAGFSLALAC--DLLVAARDAKFVMAY 135 (260)
T ss_pred EECCeeehHHHHHHHhC--CEEEeeCCCEEeccc
Confidence 99999999999999999 468999998887644
No 42
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=92.05 E-value=0.66 Score=41.05 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=67.2
Q ss_pred eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH------------hhHHHHHHHhhccCCCEEEEEe
Q 025057 111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~~ 177 (258)
.++.++.+++...|..++.++..+ -+.|.+.|+.. .|-.+..+ .....++..|...+.||...+-
T Consensus 21 ~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 98 (245)
T PF00378_consen 21 ALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN 98 (245)
T ss_dssp EBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence 468888899999888887654333 45555555322 22111111 3345678888899999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
|.|.+.|+.|++++ +.|++.+++.|- .|..
T Consensus 99 G~a~GgG~~lala~--D~~ia~~~a~f~--~pe~ 128 (245)
T PF00378_consen 99 GHAVGGGFELALAC--DFRIAAEDAKFG--FPEV 128 (245)
T ss_dssp SEEETHHHHHHHHS--SEEEEETTTEEE--TGGG
T ss_pred cccccccccccccc--ceEEeeccccee--eeec
Confidence 99999999999999 579999999944 4554
No 43
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=92.01 E-value=1.4 Score=39.52 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=62.7
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc-----------HhhHHHHHHHhhccCCCEEEEEee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-----------ETEAFAIYDVMGYVKPPIFTLCVG 178 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~-----------v~aGlAIYDtm~~ik~~V~Ti~~G 178 (258)
++.++.+.+...|..++.++ ++. +.|.+.|... .|-.+.. ......+++.|...+.||...+-|
T Consensus 29 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G 105 (259)
T PRK06688 29 LTAAMYQALADALEAAATDP---AVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNG 105 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 68888888888888776533 233 3334444221 1111110 112345677788889999999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 179 ~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
.|.+.|.-|+++++ .|++.++++|-+..
T Consensus 106 ~a~GgG~~lal~cD--~ria~~~a~f~~pe 133 (259)
T PRK06688 106 PAVGVGVSLALACD--LVYASESAKFSLPF 133 (259)
T ss_pred eeecHHHHHHHhCC--EEEecCCCEecCch
Confidence 99999999999994 68999988877744
No 44
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=89.99 E-value=1.5 Score=44.23 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=71.8
Q ss_pred eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHH
Q 025057 108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA 185 (258)
Q Consensus 108 Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAs 185 (258)
++|.++.+.++.+.. ++.+... -.-||-..+||||-.. .-|.-|-+..+-.+++.+.....|..+|++|.+++.|.
T Consensus 327 ~~G~~~~~~~~K~~r-~i~~a~~-~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~ 404 (512)
T TIGR01117 327 MAGCLDIDSSDKIAR-FIRFCDA-FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAY 404 (512)
T ss_pred ccCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHH
Confidence 357788887777765 4444433 3679999999999321 11111345566677777777888999999999999876
Q ss_pred HHHccC--CCCCeeecCCceEeEecCCc
Q 025057 186 LLLGAG--AKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 186 lILaAG--~kgkR~alPnSriMIHQP~~ 211 (258)
+.+++. .....++.|++++-+=.|.+
T Consensus 405 ~am~~~~~~~d~~~a~p~a~~~v~~pe~ 432 (512)
T TIGR01117 405 LAMCSKHLGADQVYAWPTAEIAVMGPAG 432 (512)
T ss_pred HHhccccCCCCEEEEcCCCeEeecCHHH
Confidence 665531 23568899999999988876
No 45
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=89.95 E-value=1.1 Score=45.92 Aligned_cols=86 Identities=7% Similarity=-0.030 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC---CCEEEEEeeeehhHHHHHHcc
Q 025057 114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGA 190 (258)
Q Consensus 114 d~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik---~~V~Ti~~G~AASmAslILaA 190 (258)
+.....++.+|-....++.-+-|.|.||+++| |.+...-.|++.|+..+ .||..+..+ ++|.+=+|.++
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g-------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~ 146 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSG-------WDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASF 146 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCC-------CCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhh
Confidence 44677899999888888888999999997542 56777778999988654 688887654 34545455555
Q ss_pred CCCCCeeecCCceEeEecC
Q 025057 191 GAKGNRAALPSSTIMIKQA 209 (258)
Q Consensus 191 G~kgkR~alPnSriMIHQP 209 (258)
+ ++-++.|.+.+.++-.
T Consensus 147 A--D~I~~~p~G~v~~~G~ 163 (584)
T TIGR00705 147 A--DEIILNPMGSVDLHGF 163 (584)
T ss_pred C--CEEEECCCceEEeece
Confidence 5 4689999999977643
No 46
>PRK05869 enoyl-CoA hydratase; Validated
Probab=89.45 E-value=3.6 Score=36.56 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=62.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH-----------hhH-HHHHHHhhccCCCEEEEEee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------TEA-FAIYDVMGYVKPPIFTLCVG 178 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v-----------~aG-lAIYDtm~~ik~~V~Ti~~G 178 (258)
++.++...+...|..++.++..+ -+.|.+.|... .|-.+..+ ... ..+++.|...+.||.+.+-|
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVA--AVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 67788888888888777543222 23445544321 11110111 111 24667788889999999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 179 ~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
.|.+.|..|.++++ .|++.++++|-+-.
T Consensus 109 ~a~GgG~~lalacD--~ria~~~a~f~~pe 136 (222)
T PRK05869 109 YALGAGLTLALAAD--WRVSGDNVKFGATE 136 (222)
T ss_pred EeecHHHHHHHhCC--EEEecCCCEEcCch
Confidence 99999999999995 69999988876633
No 47
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=89.09 E-value=2.7 Score=37.91 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=59.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCC-CC-CCCccccH-----------hhHHHHHHHhhccCCCEEEEEe
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg-~~-~~~~~G~v-----------~aGlAIYDtm~~ik~~V~Ti~~ 177 (258)
++.++...+...|-.++.+ .+|.. .+.+.|+ .. .|-.+..+ ......+..|..++.||...+-
T Consensus 26 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDD---PELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN 102 (261)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC
Confidence 6777888888877766642 34443 3344442 11 12111100 0123456677888999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 103 G~a~GgG~~lalacD--~~ia~~~a~f~~ 129 (261)
T PRK03580 103 GYAFGGGFELALAAD--FIVCADNASFAL 129 (261)
T ss_pred CeeehHHHHHHHHCC--EEEecCCCEEeC
Confidence 999999999999994 688888887754
No 48
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=88.91 E-value=3.8 Score=36.77 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=60.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCccccHhh------------HHHHHHHhhccCCCEEEEEe
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYETE------------AFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~v~a------------GlAIYDtm~~ik~~V~Ti~~ 177 (258)
++.++.+.+.+.+..++.+ .++.+. |-+.|... .| +|+.+ ...++..|...+.||...+-
T Consensus 24 l~~~~~~~l~~a~~~~~~d---~~vr~vVl~g~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 97 (248)
T PRK06072 24 LNLEMRNEFISKLKQINAD---PKIRVVIVTGEGRAFCVG---ADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAIN 97 (248)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccC---cCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6788888888888777643 345433 34444221 22 22211 12355667788899999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
|.|.+.|.-|+++++ -|++.++++|-+..
T Consensus 98 G~a~GgG~~lal~cD--~~ia~~~a~f~~~~ 126 (248)
T PRK06072 98 GVTAGACIGIALSTD--FKFASRDVKFVTAF 126 (248)
T ss_pred CeeehHHHHHHHhCC--EEEEcCCCEEecch
Confidence 999999999999984 68999998887644
No 49
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=88.83 E-value=4 Score=37.22 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------h-------hHHHHHHHhhccCCCEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-------EAFAIYDVMGYVKPPIF 173 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------~-------aGlAIYDtm~~ik~~V~ 173 (258)
++.++..++.+.|-.++.+ .++. |.|.+.|... .|-.+..+ . ....+++.|...+.||.
T Consensus 41 l~~~~~~eL~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 117 (277)
T PRK08258 41 LTFESYAELRDLFRELVYA---DDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII 117 (277)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6777888888877766643 2343 3444444221 12111111 0 01246677888899999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA 209 (258)
Q Consensus 174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP 209 (258)
..+-|.|.+.|.-|+++++ -|++.++++|-+...
T Consensus 118 AaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~ 151 (277)
T PRK08258 118 AAVDGVCAGAGAILAMASD--LRLGTPSAKTAFLFT 151 (277)
T ss_pred EEECCeeehHHHHHHHhCC--EEEecCCCEEecccc
Confidence 9999999999999999994 699999998877554
No 50
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=88.49 E-value=4.9 Score=36.11 Aligned_cols=90 Identities=19% Similarity=0.137 Sum_probs=60.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh----------------hHHHHHHHhhccCCCEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIF 173 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V~ 173 (258)
++.++...+.+.|..++.+ +++. |.|.+.|... .|-.+..+. ....+++.|..++.||.
T Consensus 26 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 102 (255)
T PRK07260 26 FNIPMCQEILEALRLAEED---PSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 5777778888777766643 2333 3345555331 121111100 11235567778899999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
..+-|.|.+.|..|+++++ -|++.++++|-+
T Consensus 103 aav~G~a~GgG~~lala~D--~ria~~~a~f~~ 133 (255)
T PRK07260 103 MCVDGAVAGAAANMAVAAD--FCIASTKTKFIQ 133 (255)
T ss_pred EEecCeeehhhHHHHHhCC--EEEEeCCCEEec
Confidence 9999999999999999995 699999998775
No 51
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=88.37 E-value=4 Score=36.85 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=59.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH--------hh-HHHHHHHhhccCCCEEEEEeeee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE--------TE-AFAIYDVMGYVKPPIFTLCVGNA 180 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v--------~a-GlAIYDtm~~ik~~V~Ti~~G~A 180 (258)
++.++...+.+.|..++.++ ++. +.|-+.|... .|..++.+ .. ...+++.|...+.||...+-|.|
T Consensus 24 l~~~~~~~l~~~l~~~~~~~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (251)
T TIGR03189 24 VDAAMIAALSAALGEHLEDS---ALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQC 100 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCC---CceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence 68888888888888776433 333 4444444321 22111110 00 12355667788999999999999
Q ss_pred hhHHHHHHccCCCCCeeecCCceEeE
Q 025057 181 WGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 181 ASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+.|.-|.++++ -|++.++++|-+
T Consensus 101 ~GgG~~lal~cD--~~ia~~~a~f~~ 124 (251)
T TIGR03189 101 LGGGLEVAAAGN--LMFAAPDAKLGQ 124 (251)
T ss_pred eeHHHHHHHhCC--EEEEcCCCEEeC
Confidence 999999999984 588888877655
No 52
>PRK10949 protease 4; Provisional
Probab=88.10 E-value=1.5 Score=45.24 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC---CCEEEEEeeeehhHHHHHHcc
Q 025057 114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGA 190 (258)
Q Consensus 114 d~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik---~~V~Ti~~G~AASmAslILaA 190 (258)
+....+++..|-....++.-+-|.|.|||||| +.....-.|++.|+..+ .||..+ |-.++.+...+++
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG-------~~~a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLAS 164 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAG-------ADQPSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLAS 164 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCC-------ccHHHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhhh
Confidence 45567889889888888888999999999983 22334467888887654 477664 5555666666655
Q ss_pred CCCCCeeecCCceEeEecCCc
Q 025057 191 GAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 191 G~kgkR~alPnSriMIHQP~~ 211 (258)
+. ++-++.|.+.+.++-...
T Consensus 165 aA-D~I~l~P~G~v~~~G~~~ 184 (618)
T PRK10949 165 FA-NKIYLSPQGVVDLHGFAT 184 (618)
T ss_pred hC-CEEEECCCceEEEeeeec
Confidence 43 568999999998876443
No 53
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=87.78 E-value=3.8 Score=36.73 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=58.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc-------HhhHHHHHHHhhccCCCEEEEEeeeehh
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-------ETEAFAIYDVMGYVKPPIFTLCVGNAWG 182 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~-------v~aGlAIYDtm~~ik~~V~Ti~~G~AAS 182 (258)
++.++..++...+..++. + ++. +.|-+.|... .|-.+.. ......+++.|...+.||...+-|.|.+
T Consensus 24 l~~~~~~~l~~al~~~~~-~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G 99 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-E---SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG 99 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-C---CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence 678888888887776652 2 333 3444444221 1111110 0112345667778899999999999999
Q ss_pred HHHHHHccCCCCCeeecCCceEeE
Q 025057 183 EAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 183 mAslILaAG~kgkR~alPnSriMI 206 (258)
.|.-|+++++ -|++.++++|-+
T Consensus 100 gG~~lal~cD--~~ia~~~a~f~~ 121 (243)
T PRK07854 100 AGLQLAMACD--LRVVAPEAYFQF 121 (243)
T ss_pred cHHHHHHhCC--EEEEcCCCEEec
Confidence 9999999994 588888888764
No 54
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=87.68 E-value=4.1 Score=36.87 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=62.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh----------------------hHHHHHHHhhc
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET----------------------EAFAIYDVMGY 167 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~----------------------aGlAIYDtm~~ 167 (258)
++.++...+.+.|..++.+ .++. +.|-+.|... .|-.+..+. .....++.|..
T Consensus 30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEAD---PAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTA 106 (272)
T ss_pred CCHHHHHHHHHHHHHhccC---CCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHh
Confidence 6888888888888877643 2343 3334444221 221111100 01223567788
Q ss_pred cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057 168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA 209 (258)
Q Consensus 168 ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP 209 (258)
++.||...+-|.|.+.|.-|+++++ .|++.++++|-+..+
T Consensus 107 ~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~ 146 (272)
T PRK06210 107 LRKPVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFA 146 (272)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCC--EEEEeCCCEEechHH
Confidence 8999999999999999999999994 699999999876544
No 55
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=87.65 E-value=5 Score=36.16 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=60.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccH--------h----hHHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE--------T----EAFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v--------~----aGlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++...+.+.|..++.+ .++. +.|.+.|+ .. .|-.+..+ . ....+++.|...+.||...+
T Consensus 28 l~~~~~~~l~~al~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK07657 28 LSLALLEELQNILTQINEE---ANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6778888888888776643 3344 44455453 21 22111111 0 01235667778899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMIH 207 (258)
-|.|.+.|.-|.++++ -|++.++++|-+-
T Consensus 105 ~G~a~GgG~~lal~cD--~~ia~~~a~f~~p 133 (260)
T PRK07657 105 NGIALGGGLELALACD--FRIAAESASLGLT 133 (260)
T ss_pred cCEeechHHHHHHhCC--EEEeeCCCEEcCc
Confidence 9999999999999994 6899988877653
No 56
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=87.38 E-value=5 Score=36.15 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=60.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH----------h---h-HHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE----------T---E-AFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v----------~---a-GlAIYDtm~~ik~~V~Ti 175 (258)
++.++...+.+.|-.++.++ +|. +.|.+.|... .|-.+..+ . . ...+++.|...+.||...
T Consensus 27 l~~~~~~~l~~al~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 103 (257)
T PRK06495 27 LSRELRDELIAVFDEISERP---DVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAA 103 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67888888888887776432 333 3334545321 22111111 0 0 123566777888999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
+-|.|.+.|.-|+++++ -|++.++++|-+-.
T Consensus 104 v~G~a~GgG~~lalacD--~~ia~~~a~f~~pe 134 (257)
T PRK06495 104 VNGPALGAGLGLVASCD--IIVASENAVFGLPE 134 (257)
T ss_pred ECCeeehhHHHHHHhCC--EEEecCCCEeeChh
Confidence 99999999999999995 68998888876633
No 57
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=87.26 E-value=5.2 Score=36.36 Aligned_cols=87 Identities=10% Similarity=-0.006 Sum_probs=60.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh-------------hHHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------------EAFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~-------------aGlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++.+++...|-.++.++ ++. +.|.+.|... .| +|+. ....+++.|...+.||...+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 101 (258)
T PRK06190 28 LSAALRRALFAALAEADADD---DVDVVVLTGADPAFCAG---LDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAI 101 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCccCC---cCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 68888888888887776432 333 3344444221 12 1221 12346777888999999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|+++++ .|++.++++|-+
T Consensus 102 ~G~a~GgG~~lalacD--~~ia~~~a~f~~ 129 (258)
T PRK06190 102 NGAAVTGGLELALACD--ILIASERARFAD 129 (258)
T ss_pred CCEeecHHHHHHHhCC--EEEEeCCCEEEC
Confidence 9999999999999994 688888888764
No 58
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=87.19 E-value=3.3 Score=37.19 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=62.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCccccH-----------hhHHHHHHHhhccCCCEEEEEee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCVG 178 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~v-----------~aGlAIYDtm~~ik~~V~Ti~~G 178 (258)
++.++.+.+...|-.++.+ +++...| .+.|+.. .|-.+..+ .....++..|...+.||...+-|
T Consensus 30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (251)
T PRK06023 30 ITRAMYATMAKALKAADAD---DAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDG 106 (251)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 6888888888888777643 3344333 3333221 11111100 11224567888899999999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 179 ~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
.|.+.|..|.+++ +.|++.++++|-+..
T Consensus 107 ~a~GgG~~la~ac--D~ria~~~a~f~~pe 134 (251)
T PRK06023 107 LAIGIGTTIHLHC--DLTFASPRSLFRTPF 134 (251)
T ss_pred ceecHHHHHHHhC--CEEEEeCCCEecCcc
Confidence 9999999999999 469999999987644
No 59
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=87.18 E-value=3.4 Score=37.35 Aligned_cols=90 Identities=12% Similarity=0.218 Sum_probs=58.6
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh---------------hHHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~---------------aGlAIYDtm~~ik~~V~T 174 (258)
++.++...+.+.|..++.+ .++. +.|.+.|... .|-.+..+. ....+++.|+.++.||..
T Consensus 29 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 105 (262)
T PRK07468 29 LSARMIAELTTAARRLAAD---AAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG 105 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 6677777777777666532 3343 4445544321 111111100 012357788899999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 106 av~G~a~GgG~~lala~D--~ria~~~a~f~~ 135 (262)
T PRK07468 106 RIQGQAFGGGVGLISVCD--VAIAVSGARFGL 135 (262)
T ss_pred EECCEEEhHHHHHHHhCC--EEEEeCCCEEeC
Confidence 999999999999999994 688888887655
No 60
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=86.90 E-value=4.5 Score=36.31 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=61.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh-------hH------------HHHHHHhhccCC
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------EA------------FAIYDVMGYVKP 170 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~-------aG------------lAIYDtm~~ik~ 170 (258)
++.++.+.+...|..++.++ ++. +.|.+.|+.. .|-.+..+. .. ..+++.|+..+.
T Consensus 27 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 103 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDR---GIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV 103 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCC
Confidence 67888888888888776433 333 3344444331 221111000 00 123455678899
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
||...+-|.|.+.|.-|+++++ .|++.++++|-+..
T Consensus 104 pvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe 139 (262)
T PRK07509 104 PVIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIME 139 (262)
T ss_pred CEEEEECCeeecchHHHHHhCC--EEEecCCCEeecch
Confidence 9999999999999999999995 69999999887755
No 61
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=86.79 E-value=4.9 Score=36.24 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=62.1
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc-----------------Hhh-HHHHHHHhhccCCC
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-----------------ETE-AFAIYDVMGYVKPP 171 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~-----------------v~a-GlAIYDtm~~ik~~ 171 (258)
++.++...+...|..++.++ .++. |.|.+.|... .|-.+.. +.. ...+++.|...+.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~--~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGK--AEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCC--CceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 67888888888887776432 2244 3334444221 1111110 001 12356778888999
Q ss_pred EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA 209 (258)
Q Consensus 172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP 209 (258)
|.+.+-|.|.+.|.-|+++++ .|++.++++|-+..+
T Consensus 106 vIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~~e~ 141 (266)
T PRK05981 106 IVTAVNGPAAGVGMSFALMGD--LILCARSAYFLQAFR 141 (266)
T ss_pred EEEEECCEeehHHHHHHHhCC--EEEecCCCEEechHh
Confidence 999999999999999999994 699999999875544
No 62
>PLN02600 enoyl-CoA hydratase
Probab=86.66 E-value=5.3 Score=35.91 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=58.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCC-CC-CCCcccc-----------Hhh-HHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGY-----------ETE-AFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg-~~-~~~~~G~-----------v~a-GlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++.+++.+.|-.++.+ .++...| -+.|| .. .|-.+.. ... ...+++.|...+.||...+
T Consensus 19 l~~~~~~~l~~~~~~~~~d---~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 95 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQAD---ASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV 95 (251)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5778888888877766643 2344333 34332 11 1211110 011 1234566778889999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|.++++ -|++.++++|.+
T Consensus 96 ~G~a~GgG~~lala~D--~~ia~~~a~f~~ 123 (251)
T PLN02600 96 EGAALGGGLELALSCD--LRICGEEAVFGL 123 (251)
T ss_pred cCeecchhHHHHHhCC--EEEeeCCCEEeC
Confidence 9999999999999994 689999988866
No 63
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=86.56 E-value=5.2 Score=36.14 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=60.7
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccH------------hhHHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++...+.+.|-.++.++ ++. +.|-+.|+ .. .|-.+..+ .....+++.|...+.||...+
T Consensus 31 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 31 LGTPVILALTQALRWLAADP---DVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67888888888888776432 343 44445442 21 22111111 111235677888899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|.++++ -|++.++++|-+
T Consensus 108 ~G~a~GgG~~lalacD--~~ia~~~a~f~~ 135 (256)
T PRK06143 108 PGWCLGGGLELAAACD--LRIAAHDAQFGM 135 (256)
T ss_pred CCEEeehhHHHHHhCC--EEEecCCCEEeC
Confidence 9999999999999994 588888887765
No 64
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=86.53 E-value=5.8 Score=35.96 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=57.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-C-C-CCCccccH-----------hhHHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-T-K-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~-~-~~~~~G~v-----------~aGlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++.+.+.+.|-.++.+ + +. +.|.+.|| . . .|-.+..+ ..-..+++.|...+.||...+
T Consensus 28 l~~~~~~~l~~al~~~~~d-~---v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 103 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRP-E---IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMV 103 (261)
T ss_pred CCHHHHHHHHHHHHHHhcC-C---ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5778888888877766532 2 33 44454332 1 1 22111111 111245677888899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|+++++ -|++.++++|.+
T Consensus 104 ~G~a~GgG~~lalacD--~~ia~~~a~f~~ 131 (261)
T PRK11423 104 EGSVWGGAFELIMSCD--LIIAASTSTFAM 131 (261)
T ss_pred ecEEechHHHHHHhCC--EEEecCCCEecC
Confidence 9999999999999884 688888887754
No 65
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=86.45 E-value=4.1 Score=36.68 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=61.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------h-hHHHHHHHhhccCCCEEEEEeee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-EAFAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------~-aGlAIYDtm~~ik~~V~Ti~~G~ 179 (258)
++.++.+++.+.+-.++.+ +++. +.|.+.|... .|-.+..+ . ....+++.|...+.||...+-|.
T Consensus 26 l~~~~~~~L~~~~~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK09674 26 LNNALLTQLVNELEAAATD---TSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGY 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 6778888888877766643 3343 3334444221 22111111 0 11345677888999999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 180 AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
|.+.|.-|+++++ .|++.++++|.+-.
T Consensus 103 a~GgG~~lalacD--~~ia~~~a~f~~pe 129 (255)
T PRK09674 103 ALGAGCELALLCD--IVIAGENARFGLPE 129 (255)
T ss_pred eehHHHHHHHhCC--EEEecCCCEEeCch
Confidence 9999999999994 68999888876643
No 66
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=86.16 E-value=8.7 Score=34.57 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=59.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T 174 (258)
++.++..++...|..++.+ .++. +.|.+.|... .|-.+..+ .....++..|...+.||..
T Consensus 28 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK05995 28 FNETVIAELTAAFRALDAD---DSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence 6778888888888776643 2343 4445555321 12111100 0112355667788899999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 105 av~G~a~GgG~~lalacD--~ria~~~a~f~~ 134 (262)
T PRK05995 105 RVHGDAYAGGMGLVAACD--IAVAADHAVFCL 134 (262)
T ss_pred EECCEEEhhHHHHHHhCC--EEEeeCCCEEeC
Confidence 999999999999999994 688888888765
No 67
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=86.16 E-value=6.1 Score=36.02 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=37.8
Q ss_pred HHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 160 AIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+++.|..++.||...+-|.|.+.|.-|+++++ -|++.++++|.+
T Consensus 100 ~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD--~ria~~~a~f~~ 144 (276)
T PRK05864 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAAD--IRVASSSAYFRA 144 (276)
T ss_pred HHHHHHHhCCCCEEEEECCEeehhHHHHHHhCC--EEEeeCCCEecC
Confidence 345677788999999999999999999999994 688888887753
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=86.15 E-value=4.3 Score=36.50 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=59.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh------------HHHHHHHhhccCCCEEEEEe
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE------------AFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a------------GlAIYDtm~~ik~~V~Ti~~ 177 (258)
++.++.+++.+.|-.++.+ +++. +.|-+.|... .| +++.+ ...++..|...+.||...+-
T Consensus 29 l~~~~~~~L~~~l~~~~~d---~~vr~vvl~g~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQD---PRYKVVILTGYPNYFATG---GTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQ 102 (249)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCCeeCC---cChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEec
Confidence 6777788888777766643 2333 3334444321 11 12111 13567778889999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
|.|.+.|..|.++++ -|++.++++|-+
T Consensus 103 G~a~GgG~~lal~cD--~~ia~~~a~f~~ 129 (249)
T PRK07110 103 GHAIGGGLVLGLYAD--IVVLSRESVYTA 129 (249)
T ss_pred CceechHHHHHHhCC--EEEEeCCCEecC
Confidence 999999999999994 688888887755
No 69
>PLN02888 enoyl-CoA hydratase
Probab=86.04 E-value=8 Score=35.18 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=59.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh------------HHHHHHHhhccCCCEEEEEe
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE------------AFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a------------GlAIYDtm~~ik~~V~Ti~~ 177 (258)
++.++...+...|-.++.++ ++. +.|.+.|... .| +|+.+ ...++..|..++.||.+.+-
T Consensus 34 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 107 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDD---SVKVIILTGSGRAFCSG---VDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAIN 107 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCcccCC---CCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEEC
Confidence 67888888888887776432 333 4445544221 22 12211 12355667788899999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
|.|.+.|..|+++++ .|++.++++|-+
T Consensus 108 G~a~GgG~~lal~cD--~ria~~~a~f~~ 134 (265)
T PLN02888 108 GFAITAGFEIALACD--ILVASRGAKFID 134 (265)
T ss_pred CeeechHHHHHHhCC--EEEecCCCEecC
Confidence 999999999999994 688888888765
No 70
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=85.72 E-value=1.4 Score=43.97 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=68.9
Q ss_pred EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA 184 (258)
+.+|.++.+.+.....-+-..+. -+-||-..+|.||=.. .-|.-|-+..|-.+.+.+...+.|+.||.+|.+.+.|
T Consensus 305 ~~~G~~~~~~a~K~arfi~lcd~--~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga 382 (493)
T PF01039_consen 305 QRAGALDPDGARKAARFIRLCDA--FNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGA 382 (493)
T ss_dssp CGGGEB-HHHHHHHHHHHHHHHH--TT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHH
T ss_pred cccccCChHHHHHHHHHHHHHHh--hCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcc
Confidence 45577888887776653333333 2469999999999332 1111244666888999999999999999999999988
Q ss_pred HHHHccCC--CCCeeecCCceEeEecCCch
Q 025057 185 ALLLGAGA--KGNRAALPSSTIMIKQAGDT 212 (258)
Q Consensus 185 slILaAG~--kgkR~alPnSriMIHQP~~~ 212 (258)
.+.+++.. ....++.|++++-+-.|.+.
T Consensus 383 ~~am~~~~~~~~~~~Awp~a~~~vm~~e~a 412 (493)
T PF01039_consen 383 YYAMCGRGYGPDFVFAWPTAEIGVMGPEGA 412 (493)
T ss_dssp HHHTTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred hhhhcccccchhhhhhhhcceeeecChhhh
Confidence 77666542 23578899999999888763
No 71
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=85.59 E-value=4 Score=37.55 Aligned_cols=91 Identities=8% Similarity=-0.061 Sum_probs=58.8
Q ss_pred eeChhhHHHHHHHHHhccccCCCCcEEE-EEecCC--CCC-CCCccccHh---------hH-----HHHHHHhhccCCCE
Q 025057 111 SFVPSVTELILAEFLYLQYEDVEKPIYL-YINSTG--TTK-GGEKLGYET---------EA-----FAIYDVMGYVKPPI 172 (258)
Q Consensus 111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpG--g~~-~~~~~G~v~---------aG-----lAIYDtm~~ik~~V 172 (258)
.++.++...+.+.|-.++.++ ++.+ .|-+.| +.. .|-.+..+. .- ..+++.|...+.||
T Consensus 34 al~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 110 (278)
T PLN03214 34 SMTLAMWRSLDDALTALENDP---TVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLAT 110 (278)
T ss_pred CCCHHHHHHHHHHHHHHHcCC---CceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 367788888888887776433 3333 333433 121 221111100 00 12456677888999
Q ss_pred EEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
...+-|.|.+.|..|+++++ .|++.++++|-+
T Consensus 111 IAaV~G~a~GgG~~lalacD--~ria~~~a~f~~ 142 (278)
T PLN03214 111 VCAIRGACPAGGCAVSLCCD--YRLQTTEGTMGL 142 (278)
T ss_pred EEEEcCcccchHHHHHHhCC--EEEecCCCEecC
Confidence 99999999999999999994 689888887765
No 72
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=85.50 E-value=7.2 Score=35.22 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=57.5
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCccccH----------hhHHHHHHHhhccCCCEEEEEeee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYE----------TEAFAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~v----------~aGlAIYDtm~~ik~~V~Ti~~G~ 179 (258)
++.++...+.+.|-.++.+ +++.+. |-+.|... .|-.+..+ .....+++.|...+.||...+-|.
T Consensus 32 l~~~~~~~l~~al~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSED---PDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGY 108 (261)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 6778888888877766643 344433 33433221 22111110 011235667778899999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 180 AWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 180 AASmAslILaAG~kgkR~alPnSriMI 206 (258)
|.+.|.-|+++++ .|++.++++|-+
T Consensus 109 a~GgG~~lalacD--~ria~~~a~f~~ 133 (261)
T PRK08138 109 ALGGGCELAMHAD--IIVAGESASFGQ 133 (261)
T ss_pred EEcHHHHHHHhCC--EEEecCCCEeeC
Confidence 9999999999984 577777776654
No 73
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=85.39 E-value=5.4 Score=36.36 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=39.3
Q ss_pred HHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 160 AIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+++.|..++.||...+-|.|.+.|..|.++++ -|++.++++|.+
T Consensus 102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~ 146 (275)
T PLN02664 102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSV 146 (275)
T ss_pred HHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEecc
Confidence 356678888999999999999999999999995 689999988866
No 74
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=85.35 E-value=6.2 Score=35.58 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=59.7
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccHh-----------h-HHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYET-----------E-AFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v~-----------a-GlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++...+...|-.++.++ ++. +.|.+.|+ .. .|-.+..+. . ...+++.|..++.||...+
T Consensus 26 l~~~~~~~l~~al~~~~~d~---~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 102 (258)
T PRK09076 26 WTADSLQALKQLVLELNADK---DVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAI 102 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67788888888777776432 344 34455452 11 221111110 0 1235667788899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 103 ~G~a~GgG~~lalacD--~~ia~~~a~f~~ 130 (258)
T PRK09076 103 NGYAMGGGLECALACD--IRIAEEQAQMAL 130 (258)
T ss_pred CCEEecHHHHHHHhCC--EEEecCCCEeeC
Confidence 9999999999999994 688888888765
No 75
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=85.34 E-value=7.2 Score=35.04 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=59.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH----------hhH-----HHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------TEA-----FAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v----------~aG-----lAIYDtm~~ik~~V~Ti 175 (258)
++.++..++...|-.++.++ .+ -+.|.+.|... .|-.+..+ ... -.+++.|..++.||...
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67788888888888776533 22 23334444221 11111100 011 12456778889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
+-|.|.+.|..|+++++ .|++.++++|-+
T Consensus 100 v~G~a~GgG~~lala~D--~ria~~~a~f~~ 128 (256)
T TIGR02280 100 VNGVAAGAGANLALACD--IVLAAESARFIQ 128 (256)
T ss_pred ECCeeehHHHHHHHhCC--EEEecCCCEEeC
Confidence 99999999999999994 699999988764
No 76
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=85.11 E-value=4.8 Score=36.33 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=59.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCC-CC-CCCccccH----------hh-HHHHHHHhhccCCCEEEEEe
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGT-TK-GGEKLGYE----------TE-AFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg-~~-~~~~~G~v----------~a-GlAIYDtm~~ik~~V~Ti~~ 177 (258)
++.++.+.+...|-.++.+ .+|.+. |.+.|+ .. .|-.+..+ .. ...+++.|..++.||...+-
T Consensus 26 l~~~~~~~l~~al~~~~~d---~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYD---RQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ 102 (256)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5777788888777766643 345433 344442 11 12111111 00 12356778888999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 103 G~a~GgG~~lal~cD--~~ia~~~a~f~~ 129 (256)
T TIGR03210 103 GYAIGGGNVLVTICD--LTIASEKAQFGQ 129 (256)
T ss_pred CEEehhhHHHHHhCC--EEEEeCCCEEec
Confidence 999999999999994 588888888765
No 77
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=84.99 E-value=6.3 Score=38.87 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred CcEEEeCce-----eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCCCC-CCCccccHhh------------HH----
Q 025057 103 NRIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGTTK-GGEKLGYETE------------AF---- 159 (258)
Q Consensus 103 eRIIfLgg~-----Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg~~-~~~~~G~v~a------------Gl---- 159 (258)
-++|.|.-| ++.++...+...|..++.++ +|.+ .|.+.|... -| ||+.+ +.
T Consensus 52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~---~vrvVVL~G~GkaFcAG---gDl~~l~~~~~~~~~~~~~~~f~ 125 (407)
T PLN02851 52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENP---DIGFVLMKGSGRAFCSG---ADVVSLYHLINEGNVEECKLFFE 125 (407)
T ss_pred EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCccCC---cCHHHHHhhccccchHHHHHHHH
Confidence 356677766 78899999999998887543 3443 344444221 11 22211 11
Q ss_pred HHH---HHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 160 AIY---DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 160 AIY---Dtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
..| ..|...+.||...+.|.|.+.|.-|.++++ .|++.++++|-+
T Consensus 126 ~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~fam 173 (407)
T PLN02851 126 NLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAH 173 (407)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEec
Confidence 122 345567889999999999999999999884 466666655544
No 78
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=84.50 E-value=6.9 Score=36.12 Aligned_cols=46 Identities=17% Similarity=0.000 Sum_probs=40.1
Q ss_pred HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
+++.|...+.||...+-|.|.+.|.-|+++++ -|++.++++|-+..
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe 150 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVF 150 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhCC--EEEeeCCCEEecch
Confidence 56678888999999999999999999999995 69999999887654
No 79
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=83.61 E-value=7 Score=35.29 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=57.5
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH------------hhHHHHHHHhhccCCCEEEEEe
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~~ 177 (258)
++.++..++...|-.++ + ++. +.|-+.|... .|-.+..+ .....+++.|...+.||...+-
T Consensus 26 l~~~~~~~l~~al~~~~--~---~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 100 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--E---GVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH 100 (255)
T ss_pred CCHHHHHHHHHHHHHhh--c---CCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57777788877777665 2 233 3334444211 11111110 1123456778888999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
|.|.+.|.-|+++++ .|++.++++|.+
T Consensus 101 G~a~GgG~~lalacD--~~ia~~~a~f~~ 127 (255)
T PRK08150 101 GAVVGGGLELASAAH--IRVADESTYFAL 127 (255)
T ss_pred CEEEcHHHHHHHhCC--EEEEeCCCEEec
Confidence 999999999999994 688888887765
No 80
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=83.24 E-value=7.8 Score=34.75 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=60.1
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCcccc------------HhhHHHHHHHhhccCCCEEEEEe
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGY------------ETEAFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~------------v~aGlAIYDtm~~ik~~V~Ti~~ 177 (258)
++.++..++...|-.++.+ +++... |.+.|... .|-.+.. .......+..|...+.||...+-
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 103 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEAD---PDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN 103 (249)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6788888888888777643 344433 34444221 1110000 01112344567778899999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
|.|.+.|.-|.++++ -|++.++++|-+..
T Consensus 104 G~a~GgG~~lal~cD--~ria~~~a~f~~pe 132 (249)
T PRK05870 104 GAAVGAGLNLALAAD--VRIAGPKALFDARF 132 (249)
T ss_pred CEeEchhHHHHHhCC--EEEEcCCCEEeCcc
Confidence 999999999999994 68998988886543
No 81
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=83.24 E-value=7.8 Score=35.13 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=60.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCCCC-CCCccccH-----------------------hhHHHHHHHhh
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGTTK-GGEKLGYE-----------------------TEAFAIYDVMG 166 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg~~-~~~~~G~v-----------------------~aGlAIYDtm~ 166 (258)
++.++...+.+.|-.++. +++|.+ .|.+.|... .|-.+..+ .....+++.|.
T Consensus 30 l~~~~~~~l~~~l~~~~~---d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 106 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDA---DPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA 106 (272)
T ss_pred CCHHHHHHHHHHHHHHhh---CCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 788888888887776664 234543 334444221 12111100 01134566778
Q ss_pred ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (258)
Q Consensus 167 ~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH 207 (258)
.++.||...+-|.|.+.|.-|+++++ -|++.++++|-+.
T Consensus 107 ~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~p 145 (272)
T PRK06142 107 DCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVR 145 (272)
T ss_pred hCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecch
Confidence 88999999999999999999999995 5899998877553
No 82
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=83.09 E-value=7.9 Score=34.78 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=58.7
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCC-CC-CCCccccH----------------hhHHHHHHHhhccCCCE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE----------------TEAFAIYDVMGYVKPPI 172 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg-~~-~~~~~G~v----------------~aGlAIYDtm~~ik~~V 172 (258)
++.++.+++...|-.++.+ .++.+ .|-+.|+ .. .|-.+..+ .....+++.|...+.||
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 103 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVD---ESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPV 103 (260)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCE
Confidence 6778888888877766643 23433 3344442 21 22111100 00123566777889999
Q ss_pred EEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
...+-|.|.+.|.-|+++++ -|++.++++|.+
T Consensus 104 Iaav~G~a~GgG~~lal~cD--~ria~~~a~f~~ 135 (260)
T PRK05980 104 IAAVNGLAFGGGCEITEAVH--LAIASERALFAK 135 (260)
T ss_pred EEEEcCEEEhhhhHHhHhCC--EEEecCCCEecC
Confidence 99999999999999999984 688888887765
No 83
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=82.96 E-value=9.3 Score=34.35 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=60.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCC-CCC-CCCccccH------------hhHHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTG-TTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpG-g~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++..++.+.+-.++.+ .++. +.|.+.| ... .|-.+..+ .....+++.|...+.||...+
T Consensus 28 l~~~~~~~l~~~~~~~~~d---~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK05809 28 LNSETLKELDTVLDDIEND---DNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5777778888777666543 2344 3345545 221 22111111 011346677888899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
-|.|.+.|.-|+++++ -|++.++++|.+-.
T Consensus 105 ~G~a~GgG~~lal~cD--~~va~~~a~f~~pe 134 (260)
T PRK05809 105 NGFALGGGCELSMACD--IRIASEKAKFGQPE 134 (260)
T ss_pred cCeeecHHHHHHHhCC--EEEeeCCCEEeCcc
Confidence 9999999999999994 68888888877633
No 84
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=82.74 E-value=10 Score=34.45 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh--------------hHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET--------------EAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~--------------aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++...+.+.|-.++.++ +|. +.|.+.|... .|-.+..+. ....++..|..++.||...
T Consensus 36 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDP---DVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCC---CceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 67788888888887776533 344 3334444221 121111110 0123445566778899999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 113 v~G~a~GgG~~lalacD--~ria~~~a~f~~ 141 (268)
T PRK07327 113 IHGPAVGAGLVAALLAD--ISIAAKDARIID 141 (268)
T ss_pred EcCeeeehhhHHHHhCC--EEEecCCCEEeC
Confidence 99999999999999984 688888887754
No 85
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=82.64 E-value=7.6 Score=34.93 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=58.7
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH---------------hhH-HHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------------TEA-FAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v---------------~aG-lAIYDtm~~ik~~V~T 174 (258)
++.++...+.+.+-.++ ++..+ -+.|-+.|... .|-.+..+ ... -.+++.|...+.||..
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGAR--ALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCce--EEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888888888777 33222 23333433221 11111110 000 1256677888999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+-|.|.+.|.-|++++ +-|++.++++|.+
T Consensus 105 av~G~a~GgG~~lalac--D~ria~~~a~f~~ 134 (262)
T PRK08140 105 AVNGVAAGAGANLALAC--DIVLAARSASFIQ 134 (262)
T ss_pred EECCeeehhHHHHHHhC--CEEEecCCCEEec
Confidence 99999999999999999 4699999988764
No 86
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=82.61 E-value=7.9 Score=35.06 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=58.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCC-CC-CCCccccH-------------hhHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg-~~-~~~~~G~v-------------~aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++.+++...|-.++.+ +++.+ .|.+.|+ .. .|-.+..+ .....+++.|...+.||...
T Consensus 32 l~~~~~~~l~~~l~~~~~d---~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 108 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAAD---PSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5777788888877766642 33443 3344442 11 22111110 00123556677888999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
+-|.|.+.|.-|+++++ .|++.++++|-+
T Consensus 109 v~G~a~GgG~~lala~D--~~ia~~~a~f~~ 137 (262)
T PRK06144 109 IAGACVGGGAAIAAACD--LRIATPSARFGF 137 (262)
T ss_pred ECCeeeehHHHHHHhCC--EEEecCCCEeec
Confidence 99999999999999994 699999998865
No 87
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=82.46 E-value=12 Score=33.68 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=59.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH------hh-------HHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------TE-------AFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v------~a-------GlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++...+...|..++.++ ++. +.|.+.|... .|-.+..+ .. ....++.|...+.||...+
T Consensus 25 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 101 (249)
T PRK07938 25 LPSAGWFALADAITAAGADP---DTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAV 101 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCC---CeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67778888888777666432 333 3344444221 12111111 00 1235567778899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 102 ~G~a~GgG~~Lal~cD--~ria~~~a~f~~ 129 (249)
T PRK07938 102 HGFCLGGGIGLVGNAD--VIVASDDATFGL 129 (249)
T ss_pred cCEEeehHHHHHHhCC--EEEEeCCCEeeC
Confidence 9999999999999995 689998887765
No 88
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=82.06 E-value=9.3 Score=37.19 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=57.5
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh-------------------HHHHHHHhhccCC
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKP 170 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a-------------------GlAIYDtm~~ik~ 170 (258)
++.++...+.+.|..++.++ +|. +.|-+.|... .| ||+.+ .......|..++.
T Consensus 33 Ls~~m~~~L~~al~~~~~d~---~v~~VVl~G~G~~FcAG---gDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pK 106 (381)
T PLN02988 33 LSFHMISRLLQLFLAFEEDP---SVKLVILKGHGRAFCAG---GDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSK 106 (381)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CeeEEEEECCCCCcccC---cCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCC
Confidence 67888899999888776432 343 3445555221 12 22221 1112235667889
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
||...+-|.|.+.|.-|.+++ +.|++.++++|-+
T Consensus 107 PvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~m 140 (381)
T PLN02988 107 AQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAM 140 (381)
T ss_pred CEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeC
Confidence 999999999999999999988 4577777776553
No 89
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=82.05 E-value=5.8 Score=37.84 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=64.8
Q ss_pred EeCceeChhhHHHHHHHHHhccccCC----CCcEEEEEecCCCCCCCCccccHhhHH-------HHHHHhhccC--CCEE
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDV----EKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF 173 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~----~k~I~LyINSpGg~~~~~~~G~v~aGl-------AIYDtm~~ik--~~V~ 173 (258)
|++|.+.+...+.+.. ++.+..++. -.|+-+.+.|.|+ .+.+|. -|+..+...+ -|+.
T Consensus 79 f~GGS~G~~~g~Ki~r-~~e~A~~~~~~~~~~PvV~l~dSGGa--------RlqEg~~~L~~~a~i~~~~~~ls~~VP~I 149 (301)
T PRK07189 79 FMGGSVGEVHGAKLAG-ALELAAEDNRNGIPTAVLLLFETGGV--------RLQEANAGLAAIAEIMRAIVDLRAAVPVI 149 (301)
T ss_pred ccCcCcCHHHHHHHHH-HHHHHHHhCCCCCCCCEEEEecCCCc--------CccchHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6788998888888775 555554443 2689899999883 333222 2343333333 6999
Q ss_pred EEEeee--ehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057 174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 174 Ti~~G~--AASmAslILaAG~kgkR~alPnSriMIHQP~ 210 (258)
+++.|- |++.++++.+.++ ..+|.+++++.+--|.
T Consensus 150 ~vv~G~~gc~GG~a~~a~l~D--~iIm~~~a~iglaGP~ 186 (301)
T PRK07189 150 GLIGGRVGCFGGMGIAAALCS--YLIVSEEGRLGLSGPE 186 (301)
T ss_pred EEEcCCCCCcHHHHHHHhcCC--EEEEECCcEEeccCHH
Confidence 999998 7888887777774 5789999999886664
No 90
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=82.00 E-value=11 Score=34.93 Aligned_cols=44 Identities=9% Similarity=-0.067 Sum_probs=37.1
Q ss_pred HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
++..|...+.||...+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~ 162 (302)
T PRK08272 119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGY 162 (302)
T ss_pred HHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecC
Confidence 45667788899999999999999999999994 688888887643
No 91
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=81.96 E-value=6.9 Score=36.18 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=37.7
Q ss_pred HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
++..|...+.||.+.+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~ 153 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSD 153 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecC
Confidence 44567788999999999999999999999994 689999888764
No 92
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=81.89 E-value=17 Score=32.77 Aligned_cols=91 Identities=10% Similarity=0.025 Sum_probs=59.5
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh------------h-HHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------E-AFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~------------a-GlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++...+...|..++ | .++. +.|.+.|... .|-.+..+. . ...++..|...+.||...+
T Consensus 30 l~~~~~~~l~~~l~~~~--d--~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 30 LDEPMLKELLQALKEVA--E--SSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred CCHHHHHHHHHHHHHhc--C--CCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 67788888888887773 3 2344 4445544321 221111110 0 1124455667788999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
-|.|.+.|.-|+++++ .|++.++++|-+..
T Consensus 106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe 135 (260)
T PRK07659 106 HGPAAGLGLSIALTAD--YVIADISAKLAMNF 135 (260)
T ss_pred cCceecHHHHHHHhCC--EEEEcCCCEEcCch
Confidence 9999999999999994 69999998876544
No 93
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=81.86 E-value=16 Score=32.72 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=58.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh------------hHHH-HHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------EAFA-IYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~------------aGlA-IYDtm~~ik~~V~Ti~ 176 (258)
++.++.+++...|-.++.+ .++. +.|-+.|... .|-.+..+. .... .+..|...+.||...+
T Consensus 23 l~~~~~~~l~~~l~~~~~d---~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 99 (255)
T PRK06563 23 FDSAMLDDLALALGEYEAD---DELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV 99 (255)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence 6777888888877766543 3344 4444444321 221111110 0111 1234677889999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMIH 207 (258)
-|.|.+.|..|+++++ .|++.++++|-+.
T Consensus 100 ~G~a~GgG~~lal~cD--~ria~~~a~f~~p 128 (255)
T PRK06563 100 QGYCLTLGIELMLAAD--IVVAADNTRFAQL 128 (255)
T ss_pred cCeeecHHHHHHHhCC--EEEecCCCEEeCh
Confidence 9999999999999994 6999998887664
No 94
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=81.45 E-value=12 Score=33.66 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=58.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T 174 (258)
++.++...+...|..++.+ .++. +.|.+.|... .|-.+..+ .....+++.|..++.||..
T Consensus 30 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAAD---PAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 5777788888777766542 3344 3345555331 11111100 0112345666778899999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 107 av~G~a~GgG~~lalacD--~ria~~~a~f~~ 136 (260)
T PRK07827 107 AIDGHVRAGGFGLVGACD--IVVAGPESTFAL 136 (260)
T ss_pred EEcCeeecchhhHHHhCC--EEEEcCCCEEeC
Confidence 999999999999999995 688888887655
No 95
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=81.31 E-value=11 Score=33.92 Aligned_cols=90 Identities=10% Similarity=0.108 Sum_probs=58.5
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCcccc--------H--hhHHHHHHHhhccCCCEEEEEeee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGY--------E--TEAFAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~--------v--~aGlAIYDtm~~ik~~V~Ti~~G~ 179 (258)
++.++...+.+.|-.++.+ +++.+.| -+.|... .|-.+.. . ......++.|...+.||...+-|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~ 104 (257)
T PRK05862 28 LNDALMDELGAALAAFDAD---EGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY 104 (257)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 5777788888777766643 3344333 3434221 1211111 0 112245677888899999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 180 AWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 180 AASmAslILaAG~kgkR~alPnSriMI 206 (258)
|.+.|.-|.++++ .|++.++++|-+
T Consensus 105 a~GgG~~lalacD--~~ia~~~a~f~~ 129 (257)
T PRK05862 105 ALGGGCELAMMCD--IIIAADTAKFGQ 129 (257)
T ss_pred EeHHHHHHHHHCC--EEEEeCCCEEeC
Confidence 9999999999994 688888877765
No 96
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=80.82 E-value=12 Score=33.90 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=59.7
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccH-------------hhHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v-------------~aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++.+++.+.|-.++.+ +++. +.|-+.|+ .. .|-.+... .....+++.|..++.||...
T Consensus 27 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 103 (259)
T TIGR01929 27 FRPLTVKEIIQALDDARED---PDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAM 103 (259)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5777888888777766542 3343 33444442 11 11111100 01123566788888999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
+-|.|.+.|.-|+++++ -|++.++++|.+-.
T Consensus 104 v~G~a~GgG~~lalacD--~~ia~~~a~f~~pe 134 (259)
T TIGR01929 104 VNGYAIGGGHVLHVVCD--LTIAAENARFGQTG 134 (259)
T ss_pred EcCEEehHHHHHHHhCC--EEEecCCCEecCcc
Confidence 99999999999999995 58888888887743
No 97
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=80.74 E-value=8.8 Score=36.11 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=63.4
Q ss_pred EeCceeChhhHHHHHHHHHhccccC----CCCcEEEEEecCCCCCCCCccccHhhHH-------HHHHHhhccC--CCEE
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYED----VEKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF 173 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed----~~k~I~LyINSpGg~~~~~~~G~v~aGl-------AIYDtm~~ik--~~V~ 173 (258)
|.+|-+.+...+.++. ++.+..+| ..-|+-+.+.|.| +.+.+|. -|+..+...+ .|+.
T Consensus 70 ~~GGS~G~~~g~Ki~r-~~e~A~~~~~~~~~~PvV~l~dSgG--------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~I 140 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVG-ALRLAIEDNRKGQPTAVVLLLDTGG--------VRLQEANAGLIAIAEIMRAILDARAAVPVI 140 (274)
T ss_pred ccCcCCCHHHHHHHHH-HHHHHHhhhhccCCCCEEEEEcCCC--------cChhhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6788888877777765 55455441 1248888888888 3444433 1232322222 6999
Q ss_pred EEEeee--ehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057 174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 174 Ti~~G~--AASmAslILaAG~kgkR~alPnSriMIHQP~ 210 (258)
+++.|- |++.++++.+.++ ..+|.|++++.+--|.
T Consensus 141 svv~Gp~gc~GG~a~~a~l~D--~vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 141 GVIGGRVGCFGGMGIAAGLCS--YLIMTEEGRLGLSGPE 177 (274)
T ss_pred EEEeCCCCcchHHHHHHhcCC--EEEEeCCcEEeccCHH
Confidence 999999 7788887777774 5789999999887764
No 98
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=80.42 E-value=10 Score=35.98 Aligned_cols=90 Identities=12% Similarity=0.176 Sum_probs=59.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCC-CC-CCCccccHh----------------hHHHHHHHhhccCCCE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGYET----------------EAFAIYDVMGYVKPPI 172 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg-~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V 172 (258)
++.++...+.+.+-.++. +.+|.+.| .+.|+ .. .|-.+..+. ....++..|..++.||
T Consensus 27 l~~~m~~~L~~~l~~~~~---d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 103 (342)
T PRK05617 27 LSLEMIRAIDAALDAWED---DDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY 103 (342)
T ss_pred CCHHHHHHHHHHHHHHhh---CCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 677888888887776654 33455444 44441 11 121111110 0123456677888999
Q ss_pred EEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
...+-|.|.+.|.-|.++++ -|++.++++|-+
T Consensus 104 IAaVnG~a~GgG~~LalacD--~ria~~~a~f~~ 135 (342)
T PRK05617 104 IALMDGIVMGGGVGISAHGS--HRIVTERTKMAM 135 (342)
T ss_pred EEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeC
Confidence 99999999999999999994 689988888765
No 99
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=80.34 E-value=11 Score=34.10 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=38.6
Q ss_pred HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (258)
Q Consensus 161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH 207 (258)
+++.|..++.||...+-|.|.+.|.-|++++ +-|++.++++|.+-
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~p 139 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAES 139 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEccc
Confidence 4567778889999999999999999999999 46899998887653
No 100
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=80.19 E-value=13 Score=33.68 Aligned_cols=90 Identities=14% Similarity=0.223 Sum_probs=57.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T 174 (258)
++.++...+.+.|..++.+ +++.+. |-+.|... .|-.+..+ .....++..|...+.||..
T Consensus 30 l~~~~~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (265)
T PRK05674 30 FNAQMIRELILALDQVQSD---ASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA 106 (265)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence 5777777777777766643 344433 34434221 11111100 0012345566778899999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 107 aV~G~a~GgG~~lal~~D--~~ia~~~a~f~~ 136 (265)
T PRK05674 107 VVQGAAFGGALGLISCCD--MAIGADDAQFCL 136 (265)
T ss_pred EEcCEEEechhhHhhhcC--EEEEeCCCEEeC
Confidence 999999999999999984 588888887766
No 101
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=80.04 E-value=14 Score=33.17 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=58.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc------------H-hhHHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY------------E-TEAFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~------------v-~aGlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++.+.+.+.+..++.++ ++. +.|.+.|... .|-.+.. . .....++..|...+.||...+
T Consensus 25 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav 101 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDD---NVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAI 101 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67778888887777666432 333 3344444221 1111110 0 112346677888899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 102 ~G~a~GgG~~lalacD--~ria~~~a~f~~ 129 (257)
T PRK07658 102 HGAALGGGLELAMSCH--IRFATESAKLGL 129 (257)
T ss_pred cCeeeeHHHHHHHhCC--EEEecCCCcccC
Confidence 9999999999999994 688888887765
No 102
>PRK08139 enoyl-CoA hydratase; Validated
Probab=79.45 E-value=16 Score=33.22 Aligned_cols=90 Identities=10% Similarity=0.141 Sum_probs=59.1
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCccccH---------h----hHHHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE---------T----EAFAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~v---------~----aGlAIYDtm~~ik~~V~Ti~ 176 (258)
++.++..++.+.|..++.+ +++...| .+.|... .|-.+..+ . ....+++.|...+.||...+
T Consensus 35 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (266)
T PRK08139 35 LSEAMLAALQAALDAIAAD---PSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV 111 (266)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6778888888877766642 3344333 4444221 12111110 0 01235666788899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 112 ~G~a~GgG~~lalacD--~ria~~~a~f~~ 139 (266)
T PRK08139 112 HGIATAAGCQLVASCD--LAVAADTARFAV 139 (266)
T ss_pred CceeeHHHHHHHHhCC--EEEEeCCCEEeC
Confidence 9999999999999994 689998888755
No 103
>PRK08788 enoyl-CoA hydratase; Validated
Probab=79.43 E-value=9.3 Score=35.67 Aligned_cols=93 Identities=16% Similarity=0.038 Sum_probs=56.3
Q ss_pred eChhhHHHHHHHHHhcccc--CCCCcEE-EEEecCCC-CC-CCCccccHh--------h-----HHHHHHHhh------c
Q 025057 112 FVPSVTELILAEFLYLQYE--DVEKPIY-LYINSTGT-TK-GGEKLGYET--------E-----AFAIYDVMG------Y 167 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~e--d~~k~I~-LyINSpGg-~~-~~~~~G~v~--------a-----GlAIYDtm~------~ 167 (258)
++.++.+++.+.+..++.. +.+.+|. |.|-+.|| .. .|-.+..+. + ...+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 6777888888888777640 0123455 33444422 11 221111110 0 112344443 4
Q ss_pred cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 168 ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+.||...+-|.|.+.|.-|.++++ -|++.++++|-+
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~ 156 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGF 156 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeC
Confidence 6778999999999999999999994 688888887654
No 104
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=79.32 E-value=15 Score=33.54 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=59.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH----h------------hHHHHHHHhhccCCCEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE----T------------EAFAIYDVMGYVKPPIF 173 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v----~------------aGlAIYDtm~~ik~~V~ 173 (258)
++.++...+...|-.++.+ .++. +.|.+.|... .|-.+..+ . ....+++.|...+.||.
T Consensus 32 l~~~m~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFD---DDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6778888888777766643 2343 3344544321 11111110 0 01234667778899999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
..+-|.|.+.|.-|+++++ -|++.++++|.+
T Consensus 109 Aav~G~a~GgG~~lal~cD--~~ia~~~a~f~~ 139 (275)
T PRK09120 109 AMVNGWCFGGGFSPLVACD--LAIAADEAQFGL 139 (275)
T ss_pred EEEcCEEechhHHHHHhCC--EEEEeCCcEecC
Confidence 9999999999999999994 688888888766
No 105
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=78.98 E-value=5.8 Score=36.72 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHH----------HHHhhccCCCEEEEEeeeehhHHH
Q 025057 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAI----------YDVMGYVKPPIFTLCVGNAWGEAA 185 (258)
Q Consensus 116 ~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAI----------YDtm~~ik~~V~Ti~~G~AASmAs 185 (258)
.+..+...+ ...+..||-+.|.+||... |.-+|-+.| |+.-+.-..||.++++|.|.|-|
T Consensus 51 lA~~V~~~i----~~~~krpIv~lVD~~sQa~-----grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGa- 120 (234)
T PF06833_consen 51 LAKAVLDTI----RSGPKRPIVALVDVPSQAY-----GRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGA- 120 (234)
T ss_pred HHHHHHHHH----hcCCCCCEEEEEeCCcccc-----chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHH-
Confidence 344444444 4567899999999999653 444444444 55556667899999999999965
Q ss_pred HHHccCCCCCeeecCCceEeEec
Q 025057 186 LLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 186 lILaAG~kgkR~alPnSriMIHQ 208 (258)
||..+--..+-+++| -.|||=
T Consensus 121 FLA~GlqA~rl~AL~--ga~i~v 141 (234)
T PF06833_consen 121 FLAHGLQANRLIALP--GAMIHV 141 (234)
T ss_pred HHHHHHHhcchhcCC--CCeeec
Confidence 555443334568899 566663
No 106
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=78.86 E-value=13 Score=38.26 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=70.4
Q ss_pred ceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHH
Q 025057 110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 187 (258)
Q Consensus 110 g~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslI 187 (258)
+.++.+.+.... +++.|-.. -.-|+-..+|+||-.. .-|.-|.+..+-.+.+++.....|+.|+.+|.+++.|.+.
T Consensus 380 g~l~~~~a~Kaa-rfi~lc~~-~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGA-HFIELCAQ-RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHH-HHHHHHHh-cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 446666655554 44444432 3579999999999432 1122355666677788888888999999999999999888
Q ss_pred HccC--CCCCeeecCCceEeEecCCc
Q 025057 188 LGAG--AKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 188 LaAG--~kgkR~alPnSriMIHQP~~ 211 (258)
+++. ..+..++.|++++-.=.|.+
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~ 483 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQ 483 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHH
Confidence 8744 33557788999988876665
No 107
>PLN02921 naphthoate synthase
Probab=78.77 E-value=18 Score=34.44 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=61.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCC-CC-CC-Cc--ccc-------Hhh---HHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GG-EK--LGY-------ETE---AFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg-~~-~~-~~--~G~-------v~a---GlAIYDtm~~ik~~V~Ti 175 (258)
++.++...+.+.|-.++.+ .+|.+.| -+.|. .. .| .+ ++. ... ...+++.|..++.||...
T Consensus 91 l~~~~~~eL~~al~~~~~d---~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 167 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDD---SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAM 167 (327)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6888888888888777643 3454444 33331 11 11 11 110 000 123456777888999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA 209 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQP 209 (258)
+-|.|.+.|..|.+++ +-|++.++++|-+..+
T Consensus 168 VnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~ 199 (327)
T PLN02921 168 VAGYAVGGGHILHMVC--DLTIAADNAVFGQTGP 199 (327)
T ss_pred ECCEEecHHHHHHHhC--CEEEEeCCCEEeCccc
Confidence 9999999999999999 4699999998877544
No 108
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=78.77 E-value=19 Score=32.49 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=56.4
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccHh---------hHHHHHHHhhccCCCEEEEEeee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v~---------aGlAIYDtm~~ik~~V~Ti~~G~ 179 (258)
++.++..++...|-.++.++ ++. +.|-+.|+ .. .|-.+..+. ..+.-+..+...+.||...+-|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 104 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADP---EQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGV 104 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCE
Confidence 57777888888777666433 333 33444442 11 221111110 11111222345678999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 180 AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
|.+.|.-|.++++ .|++.++++|-+-.
T Consensus 105 a~GgG~~lalacD--~ria~~~a~f~~pe 131 (259)
T PRK06494 105 AMGGGFELALACD--LIVAAENATFALPE 131 (259)
T ss_pred EecHHHHHHHhCC--EEEEeCCCEEeCcc
Confidence 9999999999994 68888888876643
No 109
>PRK08321 naphthoate synthase; Validated
Probab=78.72 E-value=14 Score=34.37 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=36.7
Q ss_pred HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeec-CCceEeE
Q 025057 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMI 206 (258)
Q Consensus 161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~al-PnSriMI 206 (258)
+++.|..++.||...+-|.|.+.|.-|+++++ -|++. ++++|-+
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~ 171 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQ 171 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEEC
Confidence 44567778899999999999999999999995 58888 5788765
No 110
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=78.65 E-value=11 Score=34.96 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=39.4
Q ss_pred HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA 209 (258)
Q Consensus 161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP 209 (258)
.+..|..++.||...+-|.|.+.|.-|.++++ -|++.++++|-+-..
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~ 150 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYS 150 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEecccc
Confidence 45567788999999999999999999999995 589988888776443
No 111
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=77.47 E-value=13 Score=33.96 Aligned_cols=91 Identities=14% Similarity=0.206 Sum_probs=59.4
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCC-CC-CCCccccH----------hh---HHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE----------TE---AFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg-~~-~~~~~G~v----------~a---GlAIYDtm~~ik~~V~Ti 175 (258)
++.++...+.+.|-.++.++ ++.. .|-+.|+ .. .|-.+... .. ...+++.|...+.||...
T Consensus 37 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDD---NIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAM 113 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 67788888888887776432 3433 3333342 11 11000000 01 123556777889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMIH 207 (258)
+-|.|.+.|.-|++++ +.|++.++++|-+=
T Consensus 114 v~G~a~GgG~~lalac--D~ria~~~a~f~~p 143 (273)
T PRK07396 114 VAGYAIGGGHVLHLVC--DLTIAADNAIFGQT 143 (273)
T ss_pred ECCEEehHHHHHHHhC--CEEEeeCCcEEecc
Confidence 9999999999999999 46899999887763
No 112
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=77.18 E-value=22 Score=32.05 Aligned_cols=47 Identities=6% Similarity=-0.000 Sum_probs=39.2
Q ss_pred HHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 160 AIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
.++..|...+.||...+-|.|.+.|..|+++++ -|++.++++|-+..
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe 133 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSE 133 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCch
Confidence 355667778899999999999999999999995 68888888886643
No 113
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=76.37 E-value=19 Score=35.37 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=57.8
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh-------------------HHHHHHHhhccCC
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKP 170 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a-------------------GlAIYDtm~~ik~ 170 (258)
++.++...+...|..++.++ +|. +.|-+.|... -| ||+.+ ...++..|..++.
T Consensus 61 Ls~~m~~~L~~al~~~~~D~---~vrvVVl~G~GkaFcAG---gDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pk 134 (401)
T PLN02157 61 LTTHMGYRLQKLYKNWEEDP---NIGFVMMKGSGRAFCAG---GDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLK 134 (401)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCccCC---cCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCC
Confidence 68888888988888776533 344 3344444221 11 23211 0112344777889
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
||...+-|.|.+.|.-|.++++ .|++.++++|-+
T Consensus 135 PvIA~v~G~a~GGG~~Lal~cD--~rvate~a~fa~ 168 (401)
T PLN02157 135 PHVAILNGVTMGGGTGVSIPGT--FRVATDRTIFAT 168 (401)
T ss_pred CEEEEEeCeEeehhHHHHHhCC--EEEEeCCCEEEC
Confidence 9999999999999999999984 688888777654
No 114
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=76.11 E-value=18 Score=35.02 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=58.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCccccHh--------------hHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYET--------------EAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~v~--------------aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++...+...|-.++.+ .+|.+.| .+.|... -|-.+..+. ....+...|..++.||...
T Consensus 35 l~~~m~~eL~~al~~~~~d---~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 111 (379)
T PLN02874 35 ISLSVVSLLAEFLEQWEKD---DSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVAL 111 (379)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6788888888888777643 3455443 4444221 111111110 0011233566788999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
+-|.|.+.|.-|.++++ .|++.++++|-+
T Consensus 112 V~G~a~GgG~~LalacD--~ria~~~a~f~~ 140 (379)
T PLN02874 112 VHGLVMGGGAGLMVPMK--FRVVTEKTVFAT 140 (379)
T ss_pred ecCeEEecHHHHHHhCC--eEEEeCCeEEec
Confidence 99999999999999984 688888887665
No 115
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=75.50 E-value=7.3 Score=34.43 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=58.9
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccc-----------cHhhHHHHHHHhhccCCCEEEEEeee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLG-----------YETEAFAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G-----------~v~aGlAIYDtm~~ik~~V~Ti~~G~ 179 (258)
++.++.+++.+.|..++ ++ . .+ +.|.+.|... .|-.+. .+.....++..|...+.||...+-|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~~-~-~v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-DD-R-AV-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-cc-C-cE-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 67778888888777665 22 2 22 4445544221 111100 11223456667778899999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCC-ceEeE
Q 025057 180 AWGEAALLLGAGAKGNRAALPS-STIMI 206 (258)
Q Consensus 180 AASmAslILaAG~kgkR~alPn-SriMI 206 (258)
|.+.|.-|+++++ .|++.++ ++|-+
T Consensus 102 a~GgG~~lal~~D--~rva~~~~a~f~~ 127 (229)
T PRK06213 102 AIAKGAFLLLSAD--YRIGVHGPFKIGL 127 (229)
T ss_pred eeHHHHHHHHhCC--eeeEecCCcEEEC
Confidence 9999999999994 6898888 77665
No 116
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=75.08 E-value=20 Score=33.94 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=62.9
Q ss_pred EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHH-------HHHH---hhccCCCEEEEE
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA-------IYDV---MGYVKPPIFTLC 176 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlA-------IYDt---m~~ik~~V~Ti~ 176 (258)
|++|.++...++.+.. +..+..+. .-|+-++..|+| ..+.+|+. ++.. +....-|..++.
T Consensus 132 f~gGS~g~~~~eKi~r-~~e~A~~~-~lPlV~l~dsgG--------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv 201 (292)
T PRK05654 132 FMGGSMGSVVGEKIVR-AVERAIEE-KCPLVIFSASGG--------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVL 201 (292)
T ss_pred cccCCccHHHHHHHHH-HHHHHHHc-CCCEEEEEcCCC--------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 6788999989888876 44444433 468888889988 34445432 1222 233357889999
Q ss_pred eeeehhHHHHHHcc-CCCCCeeecCCceEeEecCC
Q 025057 177 VGNAWGEAALLLGA-GAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 177 ~G~AASmAslILaA-G~kgkR~alPnSriMIHQP~ 210 (258)
+|-+++.++..++. | .-.++-|++++-+=-|.
T Consensus 202 ~gpt~GG~aas~a~~~--D~iia~p~A~ig~aGpr 234 (292)
T PRK05654 202 TDPTTGGVSASFAMLG--DIIIAEPKALIGFAGPR 234 (292)
T ss_pred eCCCchHHHHHHHHcC--CEEEEecCcEEEecCHH
Confidence 99998887766654 5 35788899988885553
No 117
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=74.98 E-value=31 Score=30.94 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=55.1
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCccccH--------------hhHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE--------------TEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~v--------------~aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++...+...+..++.++. ...+.| .+.|... .|-.+... .....+++.|...+.||...
T Consensus 23 l~~~~~~eL~~al~~~~~d~~--~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 100 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQAT--PGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAA 100 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--CceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 777888888887777764322 122333 3333221 12111110 01122456677888999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecC-CceEeE
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALP-SSTIMI 206 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alP-nSriMI 206 (258)
+-|.|.+.|..|+++++ .|++.+ .++|.+
T Consensus 101 V~G~a~GgG~~lalacD--~ria~~~~a~f~~ 130 (239)
T PLN02267 101 VTGHASAAGFILALSHD--YVLMRKDRGVLYM 130 (239)
T ss_pred ECCcchHHHHHHHHHCC--EEEecCCCCeEec
Confidence 99999999999999884 577764 345543
No 118
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=74.91 E-value=19 Score=35.24 Aligned_cols=92 Identities=10% Similarity=0.040 Sum_probs=61.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCC-CC-CCCcccc--------------H-hhHHHHHHHhhccCCCEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGY--------------E-TEAFAIYDVMGYVKPPIF 173 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg-~~-~~~~~G~--------------v-~aGlAIYDtm~~ik~~V~ 173 (258)
++.++...+...|..++.+ ++|.+.| -+.|. .. .|-.+.. . .....+++.|..++.||.
T Consensus 52 ls~~ml~eL~~al~~~~~D---~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSD---RDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6888888899888877643 3344443 33331 11 1100010 0 112346677888899999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
..+-|.|.+.|.-|.++++ .|++.++++|-+-.
T Consensus 129 AAVnG~AiGGGleLALaCD--lrIAse~A~Fg~PE 161 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQAG 161 (360)
T ss_pred EEECCEeeeHHHHHHHhCC--EEEEcCCCEEeCch
Confidence 9999999999999999995 68888888876643
No 119
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=74.88 E-value=19 Score=33.97 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=62.9
Q ss_pred EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHH-------HH---HhhccCCCEEEEE
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAI-------YD---VMGYVKPPIFTLC 176 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAI-------YD---tm~~ik~~V~Ti~ 176 (258)
|++|.+....++.+...+ .+..+. .-|+-+...|+|. .+.+|... +. .+....-|..++.
T Consensus 131 f~gGSmg~~~geKi~r~~-e~A~~~-~lPlV~l~dSgGa--------RmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv 200 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAI-EKALED-NCPLIIFSASGGA--------RMQEALLSLMQMAKTSAALAKMSERGLPYISVL 200 (285)
T ss_pred ccCCCccHHHHHHHHHHH-HHHHHc-CCCEEEEEcCCCc--------ccccchhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678899998888887644 343333 5689899999883 34444322 21 2233457889999
Q ss_pred eeeehhHHHHHHc-cCCCCCeeecCCceEeEecCC
Q 025057 177 VGNAWGEAALLLG-AGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 177 ~G~AASmAslILa-AG~kgkR~alPnSriMIHQP~ 210 (258)
.|-+++.++..++ .|+ -.++-|++++.+=-|.
T Consensus 201 ~gpt~GG~aas~a~~~D--~iia~p~A~ig~aGpr 233 (285)
T TIGR00515 201 TDPTTGGVSASFAMLGD--LNIAEPKALIGFAGPR 233 (285)
T ss_pred eCCcchHHHHHHHhCCC--EEEEECCeEEEcCCHH
Confidence 9999888776664 664 5788999988885443
No 120
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=74.78 E-value=5.8 Score=38.18 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=72.5
Q ss_pred CChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHh---hcc
Q 025057 94 PDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVM---GYV 168 (258)
Q Consensus 94 ~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm---~~i 168 (258)
-|.-++|.++ +|++=-+.. ..-+. |..+. +.=.-||-.+|+.||--. .-|.-| .+-||--.+ -..
T Consensus 118 ~dtk~~~~rN----FGm~~PeGy-RKAlR-lm~~A-ekF~lPiitfIDT~GAypG~~AEErG---Q~eAIA~nL~em~~L 187 (317)
T COG0825 118 RDTKEKLKRN----FGMPRPEGY-RKALR-LMKLA-EKFGLPIITFIDTPGAYPGIGAEERG---QSEAIARNLREMARL 187 (317)
T ss_pred ccchhHHHhc----CCCCCchHH-HHHHH-HHHHH-HHhCCCEEEEecCCCCCCCcchhhcc---cHHHHHHHHHHHhCC
Confidence 4677788887 365544432 22221 22232 223579999999999432 222223 344555443 467
Q ss_pred CCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 169 k~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
+.||.++++|--.|-|++-++.|+ +-+|+.||.+.+=.|.+
T Consensus 188 kvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySVisPEG 228 (317)
T COG0825 188 KVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSVISPEG 228 (317)
T ss_pred CCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeeecChhh
Confidence 889999999999999999999996 46899999999999988
No 121
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=73.21 E-value=11 Score=36.03 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=69.7
Q ss_pred eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCc--------cccHhhH--HHHHHHhhccCCCEEEEEeee
Q 025057 111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEK--------LGYETEA--FAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~--------~G~v~aG--lAIYDtm~~ik~~V~Ti~~G~ 179 (258)
-++..++.++...|..++.++..+-|-|| -+ |++. -|-. +.++..+ +.-++.+..++.||...+-|.
T Consensus 60 al~~~~m~eL~~A~~~~e~D~s~~viVlt-G~-gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~ 137 (290)
T KOG1680|consen 60 ALCRATMLELAEAFKDFESDDSVGVIVLT-GS-GKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGF 137 (290)
T ss_pred cccHHHHHHHHHHHHHhhccCcccEEEEE-cC-CCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeece
Confidence 46778888999999989887665555444 12 2221 1211 1222333 556788888999999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQAGD 211 (258)
Q Consensus 180 AASmAslILaAG~kgkR~alPnSriMIHQP~~ 211 (258)
|.+-|.-|.+.++ -|+|.++|.|+.-++.-
T Consensus 138 AlgGG~ELalmCD--irva~~~Akfg~~~~~~ 167 (290)
T KOG1680|consen 138 ALGGGLELALMCD--IRVAGEGAKFGFFEIRM 167 (290)
T ss_pred eeccchhhhhhcc--eEeccCCCeeccccccc
Confidence 9999999999995 59999999999887653
No 122
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=73.20 E-value=6.5 Score=32.88 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=30.6
Q ss_pred hccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057 166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 166 ~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~ 210 (258)
+....||.+++.|.++|.|=+|+++++ +.++.|.+.+...-..
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad--~I~~~p~s~vgsiGv~ 45 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAAD--EIYANPSSSVGSIGVS 45 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSS--EEEE-TT-EEE---EE
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCC--EEEecCCCEEEEeChh
Confidence 455679999999999999999999994 6799999988765544
No 123
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=72.63 E-value=20 Score=32.32 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=56.4
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh--------h-H-H--H-H--HHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET--------E-A-F--A-I--YDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~--------a-G-l--A-I--YDtm~~ik~~V~T 174 (258)
++.++...+...|-.++.++ ++. +.|.+.|... .|-.+..+. . . . . + +..+..++.||..
T Consensus 29 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIa 105 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDP---DIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIA 105 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEE
Confidence 67888888888887776533 233 3444444221 221111100 0 0 0 0 1 1123567889999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+-|.|.+.|.-|+++++ -|++.++++|-+
T Consensus 106 av~G~a~GgG~~lalacD--~ria~~~a~f~~ 135 (263)
T PRK07799 106 AVEGPAIAGGTEILQGTD--IRVAGESAKFGI 135 (263)
T ss_pred EECCeEeccHHHHHHhCC--EEEecCCCEecC
Confidence 999999999999999994 689998888765
No 124
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=72.03 E-value=37 Score=30.52 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=55.3
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh----------HHHHHHHh-hccCCCEEEEEee
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE----------AFAIYDVM-GYVKPPIFTLCVG 178 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a----------GlAIYDtm-~~ik~~V~Ti~~G 178 (258)
++.++..++.+.|..++.++ +|. +.|.+.|... .| +|+.+ .-.+...+ ...+.||...+-|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G 100 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADP---DLSVGILTGAGGTFCAG---MDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEG 100 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCceEcC---cCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECC
Confidence 67888888888887776432 333 3344444221 22 22211 00111111 3567899999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 179 NAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 179 ~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.|.+.|.-|+++++ -|++.++++|-+
T Consensus 101 ~a~GgG~~lalacD--~~ia~~~a~f~~ 126 (254)
T PRK08252 101 YALAGGFELALACD--LIVAARDAKFGL 126 (254)
T ss_pred EEehHHHHHHHhCC--EEEEeCCCEEeC
Confidence 99999999999994 688888887754
No 125
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=71.98 E-value=6.7 Score=35.62 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=61.1
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccH-------h------h-HHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------T------E-AFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v-------~------a-GlAIYDtm~~ik~~V~T 174 (258)
++.++...+.+.|..++.++ ++. +.|.+.|+ .. .|-.+..+ . . ...+++.|...+.||..
T Consensus 35 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 111 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDD---AIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIA 111 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888888777666432 333 33444442 11 12111100 0 0 11345677888999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQ 208 (258)
.+-|.|.+.|.-|+++++ .|++.++++|.+..
T Consensus 112 av~G~a~GgG~~LalacD--~~ia~~~a~f~~pe 143 (269)
T PRK06127 112 CIRGYCIGGGMGIALACD--IRIAAEDSRFGIPA 143 (269)
T ss_pred EECCEEecHHHHHHHhCC--EEEeeCCCEeeCch
Confidence 999999999999999994 69999999888754
No 126
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=71.08 E-value=7.5 Score=34.88 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=64.9
Q ss_pred eeChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCccccH-------------hhHHHHHHHhhccCCCEEEE
Q 025057 111 SFVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~v-------------~aGlAIYDtm~~ik~~V~Ti 175 (258)
-++.++...+.+.|..++.+ ++|..-| -+.|... -|-.++.+ .....++..|..++.||...
T Consensus 28 al~~~~~~~l~~al~~~~~d---~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 104 (257)
T COG1024 28 ALNLEMLDELAEALDEAEAD---PDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAA 104 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEE
Confidence 47788888888888877654 3444444 2223111 22111111 11123677888999999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~ 210 (258)
+-|.|.+.|.-|+++++ -|++.++++|-+....
T Consensus 105 v~G~a~GgG~eLal~~D--~ria~~~a~f~~pe~~ 137 (257)
T COG1024 105 VNGYALGGGLELALACD--IRIAAEDAKFGLPEVN 137 (257)
T ss_pred EcceEeechhhhhhcCC--eEEecCCcEecCcccc
Confidence 99999999999999994 6999999999886644
No 127
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=66.48 E-value=33 Score=30.97 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=55.2
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh-------HHH------HHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE-------AFA------IYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a-------GlA------IYDtm~~ik~~V~Ti~ 176 (258)
++.++...+.+.|-.++.++ ++. +.|.+.|... .| +|+.+ ... .+..+...+.||...+
T Consensus 27 l~~~~~~~l~~~l~~~~~d~---~vr~vvltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav 100 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADD---AASVAVLWGAGGTFCAG---ADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAV 100 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCccCC---cChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEE
Confidence 67788888888888776432 343 3334433221 12 12111 000 0111224678999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 177 ~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
-|.|.+.|.-|++++ +.|++.++++|-+
T Consensus 101 ~G~a~GgG~~lalac--D~~ia~~~a~f~~ 128 (254)
T PRK08259 101 SGYAVAGGLELALWC--DLRVAEEDAVFGV 128 (254)
T ss_pred CCEEEhHHHHHHHhC--CEEEecCCCEecC
Confidence 999999999999999 4699999998755
No 128
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=65.39 E-value=40 Score=35.26 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=59.4
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEE--EecCCCCC-CCCccccH-------------hhHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLY--INSTGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly--INSpGg~~-~~~~~G~v-------------~aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++..++.+.|..++.+ .++... +...|+.. .|-.+..+ .....++..|...+.||...
T Consensus 26 l~~~~~~eL~~~l~~~~~d---~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 102 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRD---KSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA 102 (699)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6777888888877777643 345433 23333221 11111110 11234677888899999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~ 210 (258)
+-|.|.+.|.-|.++++ .|++.+++...+..|.
T Consensus 103 VnG~a~GgG~~LaLacD--~ria~~~~~a~fg~pe 135 (699)
T TIGR02440 103 IHGACLGGGLELALACH--SRVCSDDDKTVLGLPE 135 (699)
T ss_pred ECCEeecHHHHHHHhCC--EEEEcCCCCcEEechh
Confidence 99999999999999984 6888776433444443
No 129
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=64.94 E-value=36 Score=34.92 Aligned_cols=83 Identities=11% Similarity=-0.009 Sum_probs=53.6
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEEec-CCC-CC-CCCccccHhh-------------------HHHHHHHhhccC
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINS-TGT-TK-GGEKLGYETE-------------------AFAIYDVMGYVK 169 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINS-pGg-~~-~~~~~G~v~a-------------------GlAIYDtm~~ik 169 (258)
++.++...+.+.|..++..+ ++|.+.|=+ .|| .. .| +++.+ ...+++.|+.++
T Consensus 45 l~~~~l~eL~~al~~~~~~d--~~vRvVVLtg~~Gk~FcaG---~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~p 119 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEH--PEVRTVVMTSGKDRVFCSG---ANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSG 119 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeeEEEEecCCCCCCcCC---cCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCC
Confidence 56777788888777766222 346544433 222 11 11 11111 013556677888
Q ss_pred CCEEEEEeeeehhHHHHHHccCCCCCeeecCC
Q 025057 170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPS 201 (258)
Q Consensus 170 ~~V~Ti~~G~AASmAslILaAG~kgkR~alPn 201 (258)
.||...+-|.|.+.|.-|.++++ -|++.++
T Consensus 120 kPvIAAVnG~a~GGG~~LALacD--~rvAs~~ 149 (546)
T TIGR03222 120 LKFLAAVNGTCAGGGYELALACD--EIMLVDD 149 (546)
T ss_pred CCEEEEECCEeehHHHHHHHhCC--EEEEecC
Confidence 99999999999999999999994 6888876
No 130
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=63.49 E-value=45 Score=35.10 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=62.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T 174 (258)
++.++...+.+.|-.++.++ +|. +.|-|.|... .|-.+..+ ..+-.+++.|..++.||..
T Consensus 31 l~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIA 107 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQS---SLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVA 107 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888888888776533 333 3344544221 11111100 1233577888889999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMIH 207 (258)
.+-|.|.+.|.-|.+++ +.|++.++++|-+=
T Consensus 108 ai~G~alGGGleLalac--D~ria~~~a~fglP 138 (714)
T TIGR02437 108 AINGIALGGGCECVLAT--DFRIADDTAKIGLP 138 (714)
T ss_pred EECCeeecHHHHHHHhC--CEEEEeCCCEEecc
Confidence 99999999999999999 57999998887663
No 131
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=61.17 E-value=36 Score=34.87 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=35.2
Q ss_pred HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCC--ceEe
Q 025057 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIM 205 (258)
Q Consensus 161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPn--SriM 205 (258)
+.+.|..++.||...+-|.|.+.|..|.++++ .|++.++ ++|-
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD--~rIas~~~~a~fg 159 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACD--EIVLVDDRSSAVS 159 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEE
Confidence 45667778999999999999999999999995 5787776 4543
No 132
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.36 E-value=40 Score=35.40 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=59.7
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh---------------hHHHHHHHhhccCCCEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~---------------aGlAIYDtm~~ik~~V~T 174 (258)
++.++...+.+.+-.++.+ .++. +.|.+.|... .|-.+..+. ..-.+++.|...+.||..
T Consensus 31 l~~~~~~~L~~al~~~~~d---~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 107 (715)
T PRK11730 31 LDRATLASLGEALDALEAQ---SDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA 107 (715)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 5778888888888777643 3343 4445544321 221111110 112355667788999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (258)
Q Consensus 175 i~~G~AASmAslILaAG~kgkR~alPnSriMI 206 (258)
.+-|.|.+.|.-|.++++ .|++.++++|-+
T Consensus 108 av~G~a~GgG~~LAlacD--~ria~~~a~f~~ 137 (715)
T PRK11730 108 AINGYALGGGCECVLATD--YRVASPDARIGL 137 (715)
T ss_pred EECCEeehHHHHHHHhCC--EEEEcCCCEEeC
Confidence 999999999999999994 689888887765
No 133
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=56.26 E-value=25 Score=29.45 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=34.8
Q ss_pred cCcEEEeCceeChh------hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhh
Q 025057 102 KNRIVYLGMSFVPS------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 166 (258)
Q Consensus 102 ~eRIIfLgg~Idd~------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~ 166 (258)
...+-|.-=||.|+ ...++++-+..+ .++-.|.+||-.|. |-.+-+|.|||.|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~------GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGR------GRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSS------HHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCC------CHHHHHHHHHHHhC
Confidence 45566666666554 345555544433 24678999999875 88999999999985
No 134
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.12 E-value=82 Score=33.04 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=57.1
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCC-CC-CCCccccH------h-------hHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGT-TK-GGEKLGYE------T-------EAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg-~~-~~~~~G~v------~-------aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++..++...|-.++. ++++... |-+.|| .. .|-.+..+ . ....+++.|..++.||...
T Consensus 31 l~~~~~~~L~~~l~~~~~---d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 31 LKAEFAEQVRAILKQLRE---DKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CCHHHHHHHHHHHHHHHh---CCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677778888877776764 3455543 444432 11 12111110 0 1123677888899999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCce
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSST 203 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSr 203 (258)
+-|.|.+.|.-|.++++ .|++.+++.
T Consensus 108 V~G~a~GgG~~LalacD--~ria~~~a~ 133 (708)
T PRK11154 108 IHGACLGGGLELALACH--YRVCTDDPK 133 (708)
T ss_pred ECCeeechHHHHHHhCC--EEEEeCCCC
Confidence 99999999999999994 688888763
No 135
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=50.80 E-value=59 Score=33.03 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=62.5
Q ss_pred EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCC-CCCCccccHhhHH-HHH-HHhh-ccCCCEEEEEeeeehh
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETEAF-AIY-DVMG-YVKPPIFTLCVGNAWG 182 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~-~~~~~~G~v~aGl-AIY-Dtm~-~ik~~V~Ti~~G~AAS 182 (258)
|++|.+.....+.++. +..+..+. .-|+-.++.|.|+- +.+.. ...++ .++ ...+ .-.-|+.++++|-|++
T Consensus 93 ~~gGS~g~~~~~K~~r-~~e~A~~~-~lPlV~l~dSgGarm~eg~~---~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~G 167 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVK-IMDLAMKM-GAPVVGLNDSGGARIQEAVD---ALKGYGDIFYRNTIASGVVPQISAIMGPCAG 167 (512)
T ss_pred ccccCCCHHHHHHHHH-HHHHHHHc-CCCEEEEecCCCCCccccch---hhhhHHHHHHHHHHHcCCCcEEEEEecCCCc
Confidence 6788888888888875 55555444 46887777887732 11110 01111 122 2222 2346899999999999
Q ss_pred HHHHHHccCCCCCeeecCC-ceEeEecCC
Q 025057 183 EAALLLGAGAKGNRAALPS-STIMIKQAG 210 (258)
Q Consensus 183 mAslILaAG~kgkR~alPn-SriMIHQP~ 210 (258)
-++...+.++ ..+|.++ +++.+--|.
T Consensus 168 G~a~~~al~D--~vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 168 GAVYSPALTD--FIYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHHHHhcC--ceEEeccceEEEecChH
Confidence 9999998885 5789997 467776553
No 136
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=50.01 E-value=86 Score=32.47 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=63.2
Q ss_pred EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-CccccHhhHHHHHHH-hhcc--CCCEEEEEeeeeh
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EKLGYETEAFAIYDV-MGYV--KPPIFTLCVGNAW 181 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~~~G~v~aGlAIYDt-m~~i--k~~V~Ti~~G~AA 181 (258)
|++|-+....++.++. +..+..+. .-||-..+.|+|+-- .. |.++.....-.|+.. -+.. .-|..++++|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r-~~elA~~~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLR-AQEIAAQC-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 4578888888888875 55555444 568999999988431 11 111111111124443 3323 4699999999999
Q ss_pred hHHHHHHccCCCCCeeec-CCceEeEecC
Q 025057 182 GEAALLLGAGAKGNRAAL-PSSTIMIKQA 209 (258)
Q Consensus 182 SmAslILaAG~kgkR~al-PnSriMIHQP 209 (258)
+.++.+.+..+ .-++. +++++.+--|
T Consensus 218 gGgAy~~a~~D--~vim~~~~a~i~~aGP 244 (569)
T PLN02820 218 AGGAYVPAMAD--ESVIVKGNGTIFLAGP 244 (569)
T ss_pred hHHHHHHHhCC--ceEEecCCcEEEecCH
Confidence 99998887664 44555 6788888766
No 137
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=47.73 E-value=82 Score=23.86 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=46.6
Q ss_pred EEEeCceeChhhHHHHHHHHHhccccCCCCcEEE------EEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEee
Q 025057 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL------YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~L------yINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G 178 (258)
++.+.|+++-..++.+..++..+-...+.+.+-+ ||+|.| +..=..++..++. ..+..+-.|
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg----------i~~L~~~~~~~~~--~g~~l~l~~ 78 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG----------LGVILGRYKKIKN--EGGEVIVCN 78 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH----------HHHHHHHHHHHHH--cCCEEEEEe
Confidence 5678999999999999988865432223344544 555555 3333344444444 345556777
Q ss_pred eehhHHHHHHccC
Q 025057 179 NAWGEAALLLGAG 191 (258)
Q Consensus 179 ~AASmAslILaAG 191 (258)
.-....-++-.+|
T Consensus 79 ~~~~v~~~l~~~g 91 (106)
T TIGR02886 79 VSPAVKRLFELSG 91 (106)
T ss_pred CCHHHHHHHHHhC
Confidence 7777777776666
No 138
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=47.26 E-value=50 Score=25.23 Aligned_cols=82 Identities=15% Similarity=0.018 Sum_probs=46.2
Q ss_pred cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC-CCEEEEEeeeehh
Q 025057 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK-PPIFTLCVGNAWG 182 (258)
Q Consensus 104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik-~~V~Ti~~G~AAS 182 (258)
-++.+.|+++...++.+..+++..-.++..+ .+-++-.|=.. + |.+..-++.+..+..+ ..+..+..|.-..
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~--~vvlDls~v~~---i--Dssg~~~l~~~~~~~~~~g~~l~l~g~~~~ 84 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRAR--GVIIDLTGVPV---I--DSAVARHLLRLARALRLLGARTILTGIRPE 84 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCC--EEEEECCCCch---h--cHHHHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3567899999999999988776432222223 34444433100 0 1112223333444332 3466677777777
Q ss_pred HHHHHHccCC
Q 025057 183 EAALLLGAGA 192 (258)
Q Consensus 183 mAslILaAG~ 192 (258)
..-++-.+|-
T Consensus 85 v~~~l~~~gl 94 (109)
T cd07041 85 VAQTLVELGI 94 (109)
T ss_pred HHHHHHHhCC
Confidence 7777777773
No 139
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=44.78 E-value=1.1e+02 Score=32.38 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=59.0
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEE--EEEecCCCCC-CCCccccH-------------hhHHHHHHHhhccCCCEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIY--LYINSTGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~--LyINSpGg~~-~~~~~G~v-------------~aGlAIYDtm~~ik~~V~Ti 175 (258)
++.++...+.+.|-.++. +.++. +.+.+.|+.. .|-.+..+ .....+++.|...+.||...
T Consensus 38 l~~~~~~~L~~al~~~~~---d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWT---NEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCHHHHHHHHHHHHHHhh---CCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 567788888888877764 23454 3445555332 22111111 12235677888899999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCce
Q 025057 176 CVGNAWGEAALLLGAGAKGNRAALPSST 203 (258)
Q Consensus 176 ~~G~AASmAslILaAG~kgkR~alPnSr 203 (258)
+-|.|.+.|.-|.+++ +.|++.+++.
T Consensus 115 v~G~a~GgG~eLALac--D~ria~~~a~ 140 (737)
T TIGR02441 115 ISGSCLGGGLELALAC--HYRIATKDRK 140 (737)
T ss_pred ECCEeecHHHHHHHhC--CEEEEcCCCC
Confidence 9999999999999999 4689988853
No 140
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=44.60 E-value=1.3e+02 Score=30.98 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=62.6
Q ss_pred eChhhHHHHHHHHHhccccCCCCcEEEEEecCCC-C-C--CCCc--c---cc--HhhH----HHHHHHhhccCCCEEEEE
Q 025057 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-T-K--GGEK--L---GY--ETEA----FAIYDVMGYVKPPIFTLC 176 (258)
Q Consensus 112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg-~-~--~~~~--~---G~--v~aG----lAIYDtm~~ik~~V~Ti~ 176 (258)
++.++...+...+..++.+| .+|.+.|=+.+| . . ++.+ . +. +.+. -.+++.|..++.||...+
T Consensus 295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 66778888888888776433 467776654443 2 1 1111 0 10 1111 126677888899999999
Q ss_pred -eeeehhHH-HHHHccCCCCCeee-------cCCceEeEecC
Q 025057 177 -VGNAWGEA-ALLLGAGAKGNRAA-------LPSSTIMIKQA 209 (258)
Q Consensus 177 -~G~AASmA-slILaAG~kgkR~a-------lPnSriMIHQP 209 (258)
-|.|.+.| .-|.++++ -|++ .++++|.+-..
T Consensus 373 ~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred CCCeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCcc
Confidence 79999999 88888884 5899 78888766443
No 141
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.30 E-value=76 Score=25.64 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=38.0
Q ss_pred CcEEEeCceeChhh--HHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHH--HHHHhhccCCCEEEEEee
Q 025057 103 NRIVYLGMSFVPSV--TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA--IYDVMGYVKPPIFTLCVG 178 (258)
Q Consensus 103 eRIIfLgg~Idd~~--a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlA--IYDtm~~ik~~V~Ti~~G 178 (258)
+|++++|+.|.+-. ...+...|. .+.+..++.+.=-+-+ |.....+. +...+...++++.++++|
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l~---~~~~~~~~~v~n~g~~--------G~t~~~~~~~~~~~~~~~~~d~v~l~~G 70 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYLA---ARYPELKLTFRNLGWS--------GDTVSDLAARRDRDVLPAKPDVVSIMFG 70 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHHH---HhCCCCCcEEEEcccC--------ccchhhhhhhhhcccccCCCCEEEEEee
Confidence 68999999998854 333333332 2233345665444444 45444442 223334456799999887
Q ss_pred ee
Q 025057 179 NA 180 (258)
Q Consensus 179 ~A 180 (258)
.-
T Consensus 71 ~N 72 (191)
T cd01834 71 IN 72 (191)
T ss_pred cc
Confidence 53
No 142
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.21 E-value=1.3e+02 Score=25.58 Aligned_cols=74 Identities=26% Similarity=0.187 Sum_probs=50.0
Q ss_pred CChHHhhhc------CcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhc
Q 025057 94 PDLASYLYK------NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY 167 (258)
Q Consensus 94 ~Di~s~Ll~------eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ 167 (258)
.|+...|++ .|+.|+|+. +++++.+.+.|. ..-| .+.+.=..+|- -+..+--+|.+.|+.
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~---~~yP--~l~ivg~~~g~-------f~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLR---RRYP--GLRIVGYHHGY-------FDEEEEEAIINRINA 99 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHH---HHCC--CeEEEEecCCC-------CChhhHHHHHHHHHH
Confidence 467776665 477787765 677777777665 2233 34444333341 145678899999999
Q ss_pred cCCCEEEEEeeeeh
Q 025057 168 VKPPIFTLCVGNAW 181 (258)
Q Consensus 168 ik~~V~Ti~~G~AA 181 (258)
.++++.-+++|.=-
T Consensus 100 ~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 100 SGPDIVFVGLGAPK 113 (172)
T ss_pred cCCCEEEEECCCCH
Confidence 99999999998543
No 143
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=38.60 E-value=16 Score=35.11 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=31.9
Q ss_pred hhHHHHHHHhhccCCCEEEEEee-----------eehhHHHHHHccCCCCCeeecCCceE
Q 025057 156 TEAFAIYDVMGYVKPPIFTLCVG-----------NAWGEAALLLGAGAKGNRAALPSSTI 204 (258)
Q Consensus 156 ~aGlAIYDtm~~ik~~V~Ti~~G-----------~AASmAslILaAG~kgkR~alPnSri 204 (258)
.++++|||+.+.+...+..-.+. +...+.++|||+|. ++|+..+-+.+
T Consensus 123 ~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~~~i~~IILAGGk-SsRMG~dKaLL 181 (346)
T PRK14500 123 VAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQTPLYGLVLTGGK-SRRMGKDKALL 181 (346)
T ss_pred HHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCCCCceEEEEeccc-cccCCCCcccc
Confidence 35688999999998754433222 12367788888885 78886554444
No 144
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=37.83 E-value=1.6e+02 Score=28.19 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=60.2
Q ss_pred EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHH-----------HHHHHhhccCCCEEEE
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF-----------AIYDVMGYVKPPIFTL 175 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGl-----------AIYDtm~~ik~~V~Ti 175 (258)
|++|.+...+.+.++. +..+..+. .-|+-+...|.| +.+.+|+ +++...+.-.-|..++
T Consensus 144 f~gGSmG~v~geKi~r-a~e~A~~~-rlPlV~l~~SGG--------ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 144 FMGGSMGSVVGEKITR-LIEYATNE-SLPLIIVCASGG--------ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISI 213 (296)
T ss_pred ccccCcCHHHHHHHHH-HHHHHHHc-CCCEEEEECCCC--------ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 6788888888888875 44444443 468888888876 3333333 1222222344688899
Q ss_pred EeeeehhHHHHHHcc-CCCCCeeecCCceEeEecCC
Q 025057 176 CVGNAWGEAALLLGA-GAKGNRAALPSSTIMIKQAG 210 (258)
Q Consensus 176 ~~G~AASmAslILaA-G~kgkR~alPnSriMIHQP~ 210 (258)
..|-+++.++..++. |+ -.++-|+|.+-+--|.
T Consensus 214 l~gPt~GG~aas~a~l~D--iiiae~~A~IgfAGPr 247 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGD--IIIAEPNAYIAFAGKR 247 (296)
T ss_pred EcCCCchHHHHHHHHccc--EEEEeCCeEEEeeCHH
Confidence 988887777777664 75 4678889988776554
No 145
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.75 E-value=93 Score=25.66 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=34.3
Q ss_pred cEEEeCceeChhh--------HHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEE
Q 025057 104 RIVYLGMSFVPSV--------TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTL 175 (258)
Q Consensus 104 RIIfLgg~Idd~~--------a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti 175 (258)
||+|+|+.|++.. -...+++.+ ++.++=.+-| |+.....-+.+.+...++++..+
T Consensus 1 ~iv~~GDSit~G~g~~~~~~~~~~~~~~~~---------~~~v~N~g~~--------G~~~~~~~~~~~~~~~~pd~vii 63 (177)
T cd01844 1 PWVFYGTSISQGACASRPGMAWTAILARRL---------GLEVINLGFS--------GNARLEPEVAELLRDVPADLYII 63 (177)
T ss_pred CEEEEeCchhcCcCCCCCCCcHHHHHHHHh---------CCCeEEeeec--------ccccchHHHHHHHHhcCCCEEEE
Confidence 7889998887643 122233332 2334434445 33222223556677788999999
Q ss_pred Eeeee
Q 025057 176 CVGNA 180 (258)
Q Consensus 176 ~~G~A 180 (258)
.+|.-
T Consensus 64 ~~G~N 68 (177)
T cd01844 64 DCGPN 68 (177)
T ss_pred EeccC
Confidence 88865
No 146
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=35.06 E-value=1.1e+02 Score=24.21 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=31.7
Q ss_pred hcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEec---CCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEe
Q 025057 101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINS---TGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 177 (258)
Q Consensus 101 l~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINS---pGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~ 177 (258)
++++..-+...=.-+..-.++...|.++ +++.+++|||+ |. --|.+|+....+ ..-..=|.-+|.
T Consensus 15 lk~~k~kI~~~~~f~~vi~fLrk~Lk~~---~~~slFlYin~sFaPs---pDe~vg~L~~~f------~~~~~Liv~Ys~ 82 (87)
T PF04110_consen 15 LKQKKFKISASQTFATVIAFLRKKLKLK---PSDSLFLYINNSFAPS---PDETVGDLYRCF------GTNGELIVSYSK 82 (87)
T ss_dssp -S--EEEEETTSBTHHHHHHHHHHCT-------SS-EEEEEEEE------TTSBHHHHHHHH-------BTTBEEEEEES
T ss_pred ccCcEEEECCCCchHHHHHHHHHHhCCc---cCCeEEEEEcCccCCC---chhHHHHHHHHh------CCCCEEEEEEec
Confidence 3555555444433344555666666554 35789999997 44 123445544444 433334566777
Q ss_pred eeehh
Q 025057 178 GNAWG 182 (258)
Q Consensus 178 G~AAS 182 (258)
..|++
T Consensus 83 t~A~G 87 (87)
T PF04110_consen 83 TPAWG 87 (87)
T ss_dssp SS---
T ss_pred ccccC
Confidence 77764
No 147
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=34.24 E-value=1.7e+02 Score=24.64 Aligned_cols=74 Identities=23% Similarity=0.472 Sum_probs=43.0
Q ss_pred hhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeee
Q 025057 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGN 179 (258)
Q Consensus 100 Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~ 179 (258)
+||++..-+...=.-+..-+++..+|.|++. ..+++|||+.=.-.-.+.+| .+|+.-..-..=|.-+|..+
T Consensus 43 ilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as---~slflYVN~sFAPsPDq~v~------~Ly~cf~~d~~Lvl~Yc~s~ 113 (116)
T KOG3439|consen 43 ILKKSKFKINPTQTFAKVILFLKKFLKLQAS---DSLFLYVNNSFAPSPDQIVG------NLYECFGTDGKLVLNYCISV 113 (116)
T ss_pred ceecceEEeCcchhhHHHHHHHHHHhCCccc---CeEEEEEcCccCCCchhHHH------HHHHhcCCCCEEEEEEeeec
Confidence 4666665554433345567788888888764 46999999743111112234 34554444334456677777
Q ss_pred ehh
Q 025057 180 AWG 182 (258)
Q Consensus 180 AAS 182 (258)
|++
T Consensus 114 A~G 116 (116)
T KOG3439|consen 114 AWG 116 (116)
T ss_pred ccC
Confidence 764
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=32.95 E-value=50 Score=33.09 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=62.4
Q ss_pred EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHH-------HHHHhh--ccCCCEEEEEe
Q 025057 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA-------IYDVMG--YVKPPIFTLCV 177 (258)
Q Consensus 107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlA-------IYDtm~--~ik~~V~Ti~~ 177 (258)
|++|.+.+...+.+.. +..+..+. .-|+..+++|.|+ . +.+.+|+. |+..+. +-..|+.++..
T Consensus 68 ~~gGs~g~~~~~Ki~r-a~~~A~~~-~~P~v~l~dsgGa-~-----~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~ 139 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIAR-AIELALEN-GLPLVYLVDSGGA-F-----LRMQEGVESLMGMGRIFRAIARLSGGIPQISVVT 139 (493)
T ss_dssp SGGGTBSHHHHHHHHH-HHHHHHHH-TEEEEEEEEESSB-C-----GGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred eecCCCCcccceeeeh-HHHHHHHc-CCCcEEecccccc-c-----cccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEc
Confidence 5677788888888765 55555544 4678777888773 0 13333332 222222 12568999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCC-ceEeEecCC
Q 025057 178 GNAWGEAALLLGAGAKGNRAALPS-STIMIKQAG 210 (258)
Q Consensus 178 G~AASmAslILaAG~kgkR~alPn-SriMIHQP~ 210 (258)
|-|++.++.+.+.++ ..++.+. +++.+.-|.
T Consensus 140 G~~~Gg~A~~~~~~d--~~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 140 GPCTGGGAYLAALSD--FVIMVKGTARIFLAGPR 171 (493)
T ss_dssp SEEEGGGGHHHHHSS--EEEEETTTCEEESSTHH
T ss_pred cccccchhhcccccC--ccccCccceEEEecccc
Confidence 999999988888774 4678887 999887775
No 149
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.12 E-value=1.3e+02 Score=24.93 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=40.8
Q ss_pred cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhH-HHHHHHhhccCCCEEEEEeeeeh
Q 025057 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA-FAIYDVMGYVKPPIFTLCVGNAW 181 (258)
Q Consensus 104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aG-lAIYDtm~~ik~~V~Ti~~G~AA 181 (258)
||+|+|+.+.......+.. ++.. ...+.++-.+-||+. ....+.... -.+.+.+...++++..+++|.--
T Consensus 1 ril~iGDS~~~g~~~~l~~---~~~~---~~~~~v~~~~~~g~~--~~~~~~~~~~~~~~~~l~~~~pd~vii~~G~ND 71 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLR---ALAD---NPGIRVINRSKGSSG--LVRPDFFDWPEKLKELIAEEKPDVVVVFLGAND 71 (200)
T ss_pred CEEEEechHHHHHHHHHHH---Hhcc---CCCcEEEECcccccc--ccCCCcCCHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 7999998887765444332 2222 235777777776431 000111122 13556667788999999988743
No 150
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=31.95 E-value=1.9e+02 Score=22.64 Aligned_cols=78 Identities=14% Similarity=0.017 Sum_probs=46.2
Q ss_pred EEEeCceeChhhHHHHHHHHH-hccccCCCCcEEEEEecCCCCCCCCcccc--HhhHHHHHHHhhccCCCEEEEEeeeeh
Q 025057 105 IVYLGMSFVPSVTELILAEFL-YLQYEDVEKPIYLYINSTGTTKGGEKLGY--ETEAFAIYDVMGYVKPPIFTLCVGNAW 181 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL-~L~~ed~~k~I~LyINSpGg~~~~~~~G~--v~aGlAIYDtm~~ik~~V~Ti~~G~AA 181 (258)
++.+.|+||...+..+-+.++ .+...+ .-++.|+..|=++ +++ +-.=...+...+... +..+..|.--
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~---~~~ivIDls~v~~----~dS~gl~~L~~~~~~~~~~g--~~~~l~~i~p 86 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASG---ARGLVIDLSGVDF----MDSAGLGVLVALLKSARLRG--VELVLVGIQP 86 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCC---CcEEEEECCCCce----echHHHHHHHHHHHHHHhcC--CeEEEEeCCH
Confidence 577999999999999999888 444332 2237777766221 111 111123334444443 5556666666
Q ss_pred hHHHHHHccC
Q 025057 182 GEAALLLGAG 191 (258)
Q Consensus 182 SmAslILaAG 191 (258)
..+-.+-..|
T Consensus 87 ~v~~~~~~~g 96 (117)
T COG1366 87 EVARTLELTG 96 (117)
T ss_pred HHHHHHHHhC
Confidence 6776666666
No 151
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.95 E-value=1.7e+02 Score=22.16 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=25.2
Q ss_pred cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCC
Q 025057 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTG 144 (258)
Q Consensus 104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpG 144 (258)
-++.+.|+++-..++.+-.++..+-.+... -.+-|+..|
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~--~~vilDls~ 48 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAG--KTIVIDISA 48 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCC--CEEEEECCC
Confidence 367889999999999998887643222222 345555544
No 152
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=27.19 E-value=1.5e+02 Score=30.75 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=69.0
Q ss_pred eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHH
Q 025057 108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA 185 (258)
Q Consensus 108 Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAs 185 (258)
++|.|+.+.+..-. +++.|... .+-||-+..|-||=.. +-|.-|-+--|--+.+.+-..+-|..||.+|-+.+.|-
T Consensus 336 ~~G~l~~~sa~KaA-rFI~~cd~-~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAA-RFIRLCDA-FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHH-HHHHhhhc-cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 36777777654433 34444332 2579999999998442 11222446667778889999999999999999999888
Q ss_pred HHHccCCCCCe--eecCCceEeEecCCc
Q 025057 186 LLLGAGAKGNR--AALPSSTIMIKQAGD 211 (258)
Q Consensus 186 lILaAG~kgkR--~alPnSriMIHQP~~ 211 (258)
...++..-+-| ++-||+++-.=-|.+
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG~eg 441 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMGPEG 441 (526)
T ss_pred eeecCccCCCceeEecCcceeeecCHHH
Confidence 77766544444 444788777766665
No 153
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=26.87 E-value=1.4e+02 Score=24.66 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHhccccCCCCcEEEEEe-cCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEee
Q 025057 114 PSVTELILAEFLYLQYEDVEKPIYLYIN-STGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (258)
Q Consensus 114 d~~a~~iiaqLL~L~~ed~~k~I~LyIN-SpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G 178 (258)
+|.-+++.+.|......-+.++ +||| +||+.+..+-.=|.-=+++|.-.+...+.+-.++.+|
T Consensus 23 ~esr~Rv~~al~~~g~~~p~~~--i~VNlap~~l~k~g~~~DLaIA~ailsa~~~~~~~~~~~~~G 86 (121)
T PF13541_consen 23 KESRERVRSALKNSGFPFPNQD--ITVNLAPADLKKEGPAFDLAIAIAILSAFGQIPIPEDTVFIG 86 (121)
T ss_pred HHHHHHHHHHHHhcCCCCCcce--eeeEEEeCCEEEeeeeehHHHHHHHHHhCCCcccCCCEEEEE
Confidence 3566888888888776655554 6777 4674431111112333444554444444444444444
No 154
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.82 E-value=1.4e+02 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=13.3
Q ss_pred HhhccCCCEEEEEeeee
Q 025057 164 VMGYVKPPIFTLCVGNA 180 (258)
Q Consensus 164 tm~~ik~~V~Ti~~G~A 180 (258)
.+...++++..+++|.-
T Consensus 51 ~l~~~~pd~Vii~~G~N 67 (189)
T cd01825 51 QLAALPPDLVILSYGTN 67 (189)
T ss_pred HHhhCCCCEEEEECCCc
Confidence 45577899999999855
No 155
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=25.47 E-value=1.6e+02 Score=23.82 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=38.3
Q ss_pred cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc--CCCEEEEEeeee
Q 025057 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV--KPPIFTLCVGNA 180 (258)
Q Consensus 104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i--k~~V~Ti~~G~A 180 (258)
.|+|+|+.|.-..+..+-..+ |+ +.||.-.| +....++.+++.+... .+++.++++|.-
T Consensus 1 ~v~~~GDSv~~~~~~~~~~~~-------p~----~~i~a~~g-------~~~~~~~~~l~~~~~~~~~~d~vvi~lGtN 61 (150)
T cd01840 1 DITAIGDSVMLDSSPALQEIF-------PN----IQIDAKVG-------RQMSEAPDLIRQLKDSGKLRKTVVIGLGTN 61 (150)
T ss_pred CeeEEeehHHHchHHHHHHHC-------CC----CEEEeeec-------ccHHHHHHHHHHHHHcCCCCCeEEEEecCC
Confidence 367888777766655555433 22 35665442 4577888888777754 578889988854
No 156
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.01 E-value=2.6e+02 Score=22.95 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=33.3
Q ss_pred cEEEeCceeChhhH--------HHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc-HhhHHHHHHHhhccCCCEEE
Q 025057 104 RIVYLGMSFVPSVT--------ELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY-ETEAFAIYDVMGYVKPPIFT 174 (258)
Q Consensus 104 RIIfLgg~Idd~~a--------~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~-v~aGlAIYDtm~~ik~~V~T 174 (258)
||+++|+-|..-.. -..+++++. +....++.++-.+-+ |. ..+.+.-.+.+...++++.+
T Consensus 4 ~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~---~~~~~~~~~~n~g~~--------G~t~~~~~~~l~~~~~~~pd~Vi 72 (191)
T cd01836 4 RLLVLGDSTAAGVGVETQDQALAGQLARGLA---AITGRGVRWRLFAKT--------GATSADLLRQLAPLPETRFDVAV 72 (191)
T ss_pred EEEEEeccccccccccchhccHHHHHHHHHH---HhhCCceEEEEEecC--------CcCHHHHHHHHHhcccCCCCEEE
Confidence 67777777755421 112333332 122235665555444 33 34444444444456778888
Q ss_pred EEeee
Q 025057 175 LCVGN 179 (258)
Q Consensus 175 i~~G~ 179 (258)
+.+|.
T Consensus 73 i~~G~ 77 (191)
T cd01836 73 ISIGV 77 (191)
T ss_pred EEecc
Confidence 87765
No 157
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=20.72 E-value=3.7e+02 Score=20.05 Aligned_cols=79 Identities=13% Similarity=-0.035 Sum_probs=40.6
Q ss_pred EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc--HhhHHHHHHHhhccCCCEEEEEeeeehh
Q 025057 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY--ETEAFAIYDVMGYVKPPIFTLCVGNAWG 182 (258)
Q Consensus 105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~--v~aGlAIYDtm~~ik~~V~Ti~~G~AAS 182 (258)
+|-+.|+++.+.+..+-..|..+......+ .+.|+..+-.. +.+ ...=..++..++. ..+..+..|.-..
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~--~vvidls~v~~----iDssgl~~L~~~~~~~~~--~~~~~~l~~~~~~ 86 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPR--PIVLDLEDLEF----MDSSGLGVLLGRYKQVRR--VGGQLVLVSVSPR 86 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCC--eEEEECCCCeE----EccccHHHHHHHHHHHHh--cCCEEEEEeCCHH
Confidence 456788888888888777776554322223 34444433100 000 1111222333332 3456666777766
Q ss_pred HHHHHHccC
Q 025057 183 EAALLLGAG 191 (258)
Q Consensus 183 mAslILaAG 191 (258)
...++-..|
T Consensus 87 ~~~~l~~~~ 95 (108)
T TIGR00377 87 VARLLDITG 95 (108)
T ss_pred HHHHHHHhC
Confidence 666665555
Done!