BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025059
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
Length = 313
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 25/227 (11%)
Query: 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
+TV DL CG G D+ KW+ I + D+A + + + +E+ + F AEF
Sbjct: 36 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 95
Query: 87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
AD E + ++ D+ C FE+ E+A +L+N L PGGYF+G T
Sbjct: 96 TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155
Query: 147 PDSSTIWAKYQKN-VEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
P+S + + + + E++ N E Y + F+ ++ +PLFG KY
Sbjct: 156 PNSFELIRRLEASETESFGN----------------EIYTVKFQ-KKGDYPLFGCKYDFN 198
Query: 206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADE 252
+ + LV+FP L +A++ ++ V + EFY++ +E
Sbjct: 199 LEGVVDV-PEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNE 244
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 25/239 (10%)
Query: 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
F K LI++Y+ +V DL CG G D+ K+E A I Y G+D+A I +AR N +
Sbjct: 52 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 111
Query: 79 KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
+ F F D + + + D++ F T E +N++ L+P
Sbjct: 112 RRFKVFFRAQDSYGRHMDL-----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 166
Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
GGYF+ P I +Y++ + ++ Y I E + E P+
Sbjct: 167 GGYFIMTVPSRDVILERYKQ------------------GRMSNDFYKIELE-KMEDVPME 207
Query: 199 G-KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADECWSK 256
++Y+ + ++ + V F ++ + GL VE + +FY+D + SK
Sbjct: 208 SVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNPELSK 266
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 35 VCDLYCGAGVDVDKWETALIAN----YIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90
V DL CG G+ T +A +G+D+ + AR + + +N EF + D
Sbjct: 45 VLDLACGTGIP-----TLELAERGYEVVGLDLHEEMLRVARR--KAKERNLKIEFLQGDV 97
Query: 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP--- 147
F+ N+ D V F M F+ EE R+L V+ LKPGG F+ P
Sbjct: 98 LEIAFK-------NEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDFPCWF 149
Query: 148 ----DSSTIW 153
D +W
Sbjct: 150 YGGRDGPVVW 159
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 45/241 (18%)
Query: 12 THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA---NYIGIDVATSGIG 68
T R E+ L + H V D+ CG GVD L+ + + +D + +
Sbjct: 37 TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVD----SIMLVEEGFSVMSVDASDKMLK 92
Query: 69 EARDTWENQRK-----NFIAEFFEADPCAENFETQMQE--KANQADLVCC----FQHLQM 117
A N+RK N++ E EA N+ T ++ + D V C F HL
Sbjct: 93 YALKERWNRRKEPSFDNWVIE--EA-----NWLTLDKDVLSGDGFDAVICLGNSFAHLPD 145
Query: 118 CFETEERARRLLQNVSSLLKPGG----------YFLGITPDSSTIWAKYQKNVEAYHNRS 167
C + R L+N++S+++PGG Y L ST A KN+ + +
Sbjct: 146 CKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL------STGCAPPGKNIYYKSDLT 199
Query: 168 SSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAN-DISAETQCLVHFPSLIRL 226
+ +++ + ++++++T + + P G+ F+ +S CL F L+R
Sbjct: 200 KDITTSVL--TVNNKAHMVTLDYTVQ-VPGTGRDGSPGFSKFRLSYYPHCLASFTELVRA 256
Query: 227 A 227
A
Sbjct: 257 A 257
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158
R++++ + LKPGG+F+ TP S+ + ++K
Sbjct: 175 RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEK 206
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158
R++++ + LKPGG+F+ TP S+ + ++K
Sbjct: 175 RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEK 206
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 13/141 (9%)
Query: 12 THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA---NYIGIDVATSGIG 68
T R E+ L + H V D+ CG GVD L+ + +D + +
Sbjct: 37 TRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVD----SIMLVEEGFSVTSVDASDKMLK 92
Query: 69 EA-RDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA-DLVCC----FQHLQMCFETE 122
A ++ W + + ++ + + + + A D V C F HL C +
Sbjct: 93 YALKERWNRRHEPAFDKWVIEEANWMTLDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQ 152
Query: 123 ERARRLLQNVSSLLKPGGYFL 143
R L+N++S+++ GG +
Sbjct: 153 SEHRLALKNIASMVRAGGLLV 173
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 13/141 (9%)
Query: 12 THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA---NYIGIDVATSGIG 68
T R E+ L + H V D+ CG GVD L+ + +D + +
Sbjct: 38 TRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVD----SIMLVEEGFSVTSVDASDKMLK 93
Query: 69 EA-RDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA-DLVCC----FQHLQMCFETE 122
A ++ W + + ++ + + + + A D V C F HL C +
Sbjct: 94 YALKERWNRRHEPAFDKWVIEEANWMTLDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQ 153
Query: 123 ERARRLLQNVSSLLKPGGYFL 143
R L+N++S+++ GG +
Sbjct: 154 SEHRLALKNIASMVRAGGLLV 174
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 163 YHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
YH + P LV C R E+ + EVE E P GK Y L++
Sbjct: 161 YHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTP--GKLYTLRY 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,921,675
Number of Sequences: 62578
Number of extensions: 310180
Number of successful extensions: 664
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 9
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)