Query 025059
Match_columns 258
No_of_seqs 221 out of 2125
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1975 mRNA cap methyltransfe 100.0 1E-47 2.2E-52 321.2 19.7 229 7-251 90-329 (389)
2 PF03291 Pox_MCEL: mRNA cappin 100.0 3.8E-47 8.2E-52 330.8 21.7 234 7-252 29-280 (331)
3 PF01209 Ubie_methyltran: ubiE 99.9 6.3E-25 1.4E-29 183.4 10.6 180 18-240 34-221 (233)
4 COG2226 UbiE Methylase involve 99.9 2.2E-24 4.8E-29 178.7 12.9 177 18-237 38-222 (238)
5 KOG1540 Ubiquinone biosynthesi 99.8 2.4E-20 5.3E-25 152.5 13.1 170 21-236 89-278 (296)
6 PLN02396 hexaprenyldihydroxybe 99.8 6.5E-20 1.4E-24 159.7 15.0 161 31-241 131-291 (322)
7 PLN02233 ubiquinone biosynthes 99.8 1.3E-19 2.8E-24 154.4 13.4 110 29-148 71-184 (261)
8 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.1E-20 2.3E-25 154.5 5.7 180 9-240 33-216 (243)
9 PF12847 Methyltransf_18: Meth 99.8 1.1E-18 2.3E-23 129.5 11.6 109 31-147 1-112 (112)
10 PTZ00098 phosphoethanolamine N 99.8 5.5E-18 1.2E-22 144.5 14.7 108 29-147 50-157 (263)
11 PLN02244 tocopherol O-methyltr 99.8 3E-17 6.5E-22 144.9 19.8 109 30-148 117-225 (340)
12 PRK11036 putative S-adenosyl-L 99.8 8.6E-18 1.9E-22 142.8 15.5 118 24-151 37-154 (255)
13 COG2230 Cfa Cyclopropane fatty 99.8 2.6E-17 5.7E-22 139.0 15.6 161 28-245 69-229 (283)
14 PF08241 Methyltransf_11: Meth 99.8 5.5E-18 1.2E-22 121.4 9.5 95 36-144 1-95 (95)
15 TIGR02752 MenG_heptapren 2-hep 99.8 5.9E-18 1.3E-22 141.6 10.9 120 18-148 32-153 (231)
16 PRK05785 hypothetical protein; 99.7 7.8E-18 1.7E-22 140.4 10.0 159 29-239 49-211 (226)
17 PF13489 Methyltransf_23: Meth 99.7 4.3E-17 9.2E-22 128.3 11.8 100 29-150 20-119 (161)
18 KOG1270 Methyltransferases [Co 99.7 9.6E-18 2.1E-22 138.2 8.3 170 18-240 68-250 (282)
19 PRK15451 tRNA cmo(5)U34 methyl 99.7 9.4E-17 2E-21 135.8 14.1 112 24-145 49-163 (247)
20 PF02353 CMAS: Mycolic acid cy 99.7 7.3E-17 1.6E-21 137.8 12.8 166 28-246 59-224 (273)
21 PF13847 Methyltransf_31: Meth 99.7 1.5E-16 3.3E-21 124.7 12.7 109 30-148 2-112 (152)
22 PRK15068 tRNA mo(5)U34 methylt 99.7 2.5E-16 5.5E-21 137.8 15.1 105 31-146 122-226 (322)
23 KOG1271 Methyltransferases [Ge 99.7 2.6E-16 5.6E-21 122.9 11.4 141 11-157 46-194 (227)
24 TIGR00740 methyltransferase, p 99.7 7.2E-16 1.6E-20 129.8 15.1 114 24-147 46-162 (239)
25 PF07021 MetW: Methionine bios 99.7 5.7E-16 1.2E-20 123.3 13.5 165 23-241 5-169 (193)
26 TIGR00452 methyltransferase, p 99.7 3.9E-16 8.5E-21 135.5 13.7 106 31-147 121-226 (314)
27 smart00828 PKS_MT Methyltransf 99.7 4.4E-16 9.6E-21 129.7 13.6 150 33-246 1-151 (224)
28 PRK11207 tellurite resistance 99.7 3.4E-16 7.4E-21 127.9 12.4 104 31-145 30-133 (197)
29 PRK14103 trans-aconitate 2-met 99.7 6.1E-16 1.3E-20 131.4 14.2 100 30-148 28-128 (255)
30 PF13649 Methyltransf_25: Meth 99.7 2E-16 4.4E-21 115.4 9.2 96 35-140 1-101 (101)
31 PLN02336 phosphoethanolamine N 99.7 1.9E-15 4.2E-20 139.3 17.7 106 30-147 265-370 (475)
32 PRK11705 cyclopropane fatty ac 99.7 8.1E-15 1.8E-19 131.1 18.7 155 29-246 165-319 (383)
33 TIGR00477 tehB tellurite resis 99.7 1.7E-15 3.7E-20 123.6 13.2 103 31-145 30-132 (195)
34 PRK10258 biotin biosynthesis p 99.7 1.1E-15 2.5E-20 129.4 12.1 103 31-150 42-144 (251)
35 TIGR02021 BchM-ChlM magnesium 99.7 1.1E-14 2.5E-19 120.9 17.8 102 31-144 55-156 (219)
36 PLN02490 MPBQ/MSBQ methyltrans 99.7 9.5E-16 2.1E-20 134.2 11.7 104 30-147 112-216 (340)
37 PRK00107 gidB 16S rRNA methylt 99.7 4.3E-15 9.3E-20 120.1 14.7 129 5-149 18-148 (187)
38 TIGR03438 probable methyltrans 99.6 2.3E-14 4.9E-19 124.6 19.5 112 30-145 62-176 (301)
39 PF03848 TehB: Tellurite resis 99.6 2.7E-15 6E-20 120.8 11.1 103 31-145 30-132 (192)
40 PRK01683 trans-aconitate 2-met 99.6 2.4E-15 5.1E-20 128.0 10.8 104 29-149 29-133 (258)
41 PRK12335 tellurite resistance 99.6 5.8E-15 1.3E-19 127.5 12.7 104 31-146 120-223 (287)
42 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 1.5E-14 3.2E-19 120.0 14.4 104 30-146 38-143 (223)
43 PF05401 NodS: Nodulation prot 99.6 4.3E-15 9.4E-20 118.6 10.6 106 31-148 43-148 (201)
44 PRK05134 bifunctional 3-demeth 99.6 1.8E-14 4E-19 120.6 15.0 108 30-149 47-154 (233)
45 TIGR00138 gidB 16S rRNA methyl 99.6 2.5E-14 5.3E-19 115.3 14.9 124 7-147 18-143 (181)
46 PRK06202 hypothetical protein; 99.6 1.8E-14 3.9E-19 120.7 14.6 103 31-147 60-167 (232)
47 TIGR03587 Pse_Me-ase pseudamin 99.6 1.4E-14 3E-19 119.0 13.5 100 29-145 41-141 (204)
48 TIGR01983 UbiG ubiquinone bios 99.6 2.9E-14 6.2E-19 118.6 14.8 122 18-150 31-153 (224)
49 PF08242 Methyltransf_12: Meth 99.6 4.5E-16 9.9E-21 113.0 3.2 98 36-142 1-99 (99)
50 PLN02585 magnesium protoporphy 99.6 2E-13 4.2E-18 118.8 19.5 105 31-148 144-252 (315)
51 KOG4300 Predicted methyltransf 99.6 1E-14 2.2E-19 116.3 10.2 104 33-147 78-183 (252)
52 smart00138 MeTrc Methyltransfe 99.6 1.8E-14 4E-19 122.8 12.2 122 16-145 83-241 (264)
53 PRK07580 Mg-protoporphyrin IX 99.6 3.3E-13 7.1E-18 112.7 19.3 99 30-140 62-160 (230)
54 PRK00121 trmB tRNA (guanine-N( 99.6 2.5E-14 5.5E-19 117.3 11.6 122 27-153 36-163 (202)
55 TIGR02072 BioC biotin biosynth 99.6 4.1E-14 8.9E-19 118.4 12.5 106 31-151 34-140 (240)
56 TIGR02469 CbiT precorrin-6Y C5 99.6 1.4E-13 3E-18 103.5 14.2 106 29-147 17-123 (124)
57 PRK11088 rrmA 23S rRNA methylt 99.6 4.7E-14 1E-18 121.0 12.8 101 31-154 85-189 (272)
58 PF05175 MTS: Methyltransferas 99.6 1.7E-13 3.7E-18 109.4 14.9 111 31-149 31-143 (170)
59 PRK06922 hypothetical protein; 99.6 3.3E-14 7.2E-19 132.0 12.2 108 31-146 418-537 (677)
60 PRK11873 arsM arsenite S-adeno 99.6 3.7E-14 8E-19 121.6 11.4 107 29-146 75-183 (272)
61 TIGR03840 TMPT_Se_Te thiopurin 99.5 1.2E-13 2.5E-18 114.1 13.6 108 30-145 33-151 (213)
62 PRK00216 ubiE ubiquinone/menaq 99.5 8.2E-14 1.8E-18 116.7 12.7 107 30-146 50-158 (239)
63 TIGR02081 metW methionine bios 99.5 2.3E-13 5.1E-18 110.9 14.6 160 26-241 8-169 (194)
64 PRK08317 hypothetical protein; 99.5 1.3E-13 2.8E-18 115.3 13.4 108 29-148 17-126 (241)
65 TIGR00406 prmA ribosomal prote 99.5 1.6E-13 3.4E-18 118.6 13.0 110 25-149 153-262 (288)
66 KOG2361 Predicted methyltransf 99.5 1.7E-13 3.8E-18 111.8 12.1 175 17-236 54-234 (264)
67 TIGR02716 C20_methyl_CrtF C-20 99.5 3.5E-13 7.6E-18 117.5 14.9 105 30-145 148-253 (306)
68 PF13659 Methyltransf_26: Meth 99.5 5.5E-14 1.2E-18 104.9 7.9 113 32-148 1-117 (117)
69 COG4106 Tam Trans-aconitate me 99.5 3.3E-14 7.2E-19 114.1 7.0 102 31-149 30-132 (257)
70 PRK15001 SAM-dependent 23S rib 99.5 8.9E-13 1.9E-17 117.1 16.3 119 24-149 219-343 (378)
71 PLN02232 ubiquinone biosynthes 99.5 2.7E-14 5.9E-19 112.9 5.4 81 58-148 1-83 (160)
72 PF08003 Methyltransf_9: Prote 99.5 4.9E-13 1.1E-17 113.5 12.8 103 31-146 115-219 (315)
73 PLN03075 nicotianamine synthas 99.5 7.5E-13 1.6E-17 113.3 13.8 108 31-147 123-234 (296)
74 PRK13255 thiopurine S-methyltr 99.5 6.5E-13 1.4E-17 110.1 13.0 109 29-145 35-154 (218)
75 TIGR00537 hemK_rel_arch HemK-r 99.5 8.1E-13 1.8E-17 106.3 12.5 107 31-148 19-142 (179)
76 PRK13944 protein-L-isoaspartat 99.5 1.3E-12 2.8E-17 107.5 13.9 102 29-146 70-173 (205)
77 PRK08287 cobalt-precorrin-6Y C 99.5 2.7E-12 5.9E-17 104.0 15.1 103 29-147 29-132 (187)
78 PRK09489 rsmC 16S ribosomal RN 99.5 2.5E-12 5.3E-17 113.4 15.2 108 32-149 197-306 (342)
79 TIGR00091 tRNA (guanine-N(7)-) 99.5 6.8E-13 1.5E-17 108.2 10.8 117 30-150 15-136 (194)
80 PLN02336 phosphoethanolamine N 99.4 7.3E-13 1.6E-17 122.3 12.1 105 31-145 37-141 (475)
81 COG2264 PrmA Ribosomal protein 99.4 6.6E-13 1.4E-17 113.3 10.7 109 24-146 155-263 (300)
82 PF06325 PrmA: Ribosomal prote 99.4 6.2E-13 1.3E-17 114.3 10.4 106 23-145 153-258 (295)
83 PRK00517 prmA ribosomal protei 99.4 1.1E-12 2.4E-17 111.1 11.8 101 27-148 115-215 (250)
84 PRK00377 cbiT cobalt-precorrin 99.4 4.2E-12 9E-17 103.9 14.7 111 29-151 38-150 (198)
85 PRK14967 putative methyltransf 99.4 2.8E-12 6.1E-17 106.8 13.8 112 29-149 34-162 (223)
86 PRK04266 fibrillarin; Provisio 99.4 2.9E-12 6.2E-17 106.7 13.6 108 29-148 70-178 (226)
87 PRK11188 rrmJ 23S rRNA methylt 99.4 3.4E-12 7.4E-17 105.2 13.0 116 29-156 49-175 (209)
88 PRK13942 protein-L-isoaspartat 99.4 3.6E-12 7.7E-17 105.4 13.1 101 29-146 74-176 (212)
89 TIGR00080 pimt protein-L-isoas 99.4 4.1E-12 8.9E-17 105.3 12.7 101 29-146 75-177 (215)
90 TIGR01177 conserved hypothetic 99.4 3.3E-12 7.1E-17 112.5 12.8 119 29-155 180-303 (329)
91 TIGR03533 L3_gln_methyl protei 99.4 1.8E-11 4E-16 105.5 16.3 112 31-149 121-254 (284)
92 PRK13256 thiopurine S-methyltr 99.4 9.2E-12 2E-16 103.1 12.3 113 30-148 42-165 (226)
93 PRK14968 putative methyltransf 99.4 2.1E-11 4.6E-16 98.4 14.0 112 30-149 22-151 (188)
94 PRK11805 N5-glutamine S-adenos 99.4 2.9E-11 6.3E-16 105.2 15.3 110 33-149 135-266 (307)
95 PTZ00146 fibrillarin; Provisio 99.3 2E-11 4.3E-16 104.2 13.4 105 29-145 130-236 (293)
96 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.3E-11 2.8E-16 109.4 12.3 113 31-150 122-239 (390)
97 KOG3010 Methyltransferase [Gen 99.3 2.8E-12 6.2E-17 104.8 7.3 199 17-237 21-230 (261)
98 PRK00312 pcm protein-L-isoaspa 99.3 3.1E-11 6.6E-16 99.8 13.6 101 29-147 76-176 (212)
99 COG4123 Predicted O-methyltran 99.3 1.2E-11 2.7E-16 102.9 10.9 134 20-157 31-183 (248)
100 PRK07402 precorrin-6B methylas 99.3 3.7E-11 8E-16 98.1 13.3 109 30-152 39-148 (196)
101 TIGR03534 RF_mod_PrmC protein- 99.3 4E-11 8.8E-16 101.3 13.9 110 30-147 86-218 (251)
102 COG4976 Predicted methyltransf 99.3 2.5E-12 5.4E-17 104.2 5.7 140 32-239 126-265 (287)
103 TIGR00438 rrmJ cell division p 99.3 3.3E-11 7.2E-16 97.7 12.1 109 29-149 30-149 (188)
104 TIGR00536 hemK_fam HemK family 99.3 5.7E-11 1.2E-15 102.5 14.2 110 33-149 116-247 (284)
105 cd02440 AdoMet_MTases S-adenos 99.3 3.9E-11 8.5E-16 86.0 11.2 103 34-145 1-103 (107)
106 COG2813 RsmC 16S RNA G1207 met 99.3 7.7E-11 1.7E-15 100.3 13.8 117 31-156 158-276 (300)
107 PRK14966 unknown domain/N5-glu 99.3 7.8E-11 1.7E-15 105.2 14.3 112 30-148 250-383 (423)
108 KOG1541 Predicted protein carb 99.3 7.4E-11 1.6E-15 95.2 12.5 113 22-147 39-161 (270)
109 PRK04457 spermidine synthase; 99.3 1.1E-10 2.3E-15 99.6 14.3 122 29-156 64-187 (262)
110 PRK15128 23S rRNA m(5)C1962 me 99.3 7.8E-11 1.7E-15 105.7 13.6 125 31-159 220-352 (396)
111 PRK09328 N5-glutamine S-adenos 99.3 1.3E-10 2.8E-15 99.7 13.5 109 30-146 107-238 (275)
112 PRK00811 spermidine synthase; 99.2 1.2E-10 2.6E-15 100.4 12.7 113 30-147 75-192 (283)
113 COG2242 CobL Precorrin-6B meth 99.2 3.9E-10 8.5E-15 89.5 14.5 121 19-154 21-143 (187)
114 PF05724 TPMT: Thiopurine S-me 99.2 5.4E-11 1.2E-15 98.5 9.9 110 28-145 34-154 (218)
115 PF06080 DUF938: Protein of un 99.2 4.4E-10 9.6E-15 91.0 13.7 119 25-145 18-140 (204)
116 PRK10901 16S rRNA methyltransf 99.2 3.9E-10 8.4E-15 102.7 15.0 112 30-148 243-374 (427)
117 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.7E-10 3.6E-15 98.5 11.6 113 30-149 70-202 (264)
118 PLN02781 Probable caffeoyl-CoA 99.2 3E-10 6.6E-15 95.2 12.5 106 31-145 68-177 (234)
119 PRK13943 protein-L-isoaspartat 99.2 2.6E-10 5.6E-15 99.6 12.4 101 29-146 78-180 (322)
120 PRK14903 16S rRNA methyltransf 99.2 3.7E-10 8.1E-15 102.7 13.7 114 30-149 236-369 (431)
121 smart00650 rADc Ribosomal RNA 99.2 2.7E-10 5.8E-15 90.8 11.2 104 29-147 11-114 (169)
122 PRK14904 16S rRNA methyltransf 99.2 3.8E-10 8.2E-15 103.3 13.6 110 31-149 250-380 (445)
123 PRK01544 bifunctional N5-gluta 99.2 2.1E-10 4.5E-15 106.3 11.9 110 31-147 138-270 (506)
124 KOG2904 Predicted methyltransf 99.2 1.5E-09 3.2E-14 90.5 15.2 152 2-157 122-299 (328)
125 PF05891 Methyltransf_PK: AdoM 99.2 1.5E-10 3.2E-15 94.2 9.1 106 31-145 55-160 (218)
126 TIGR03704 PrmC_rel_meth putati 99.2 7.6E-10 1.7E-14 93.8 13.6 110 32-149 87-219 (251)
127 PRK14901 16S rRNA methyltransf 99.2 7.6E-10 1.6E-14 101.0 14.0 116 30-148 251-386 (434)
128 PRK11783 rlmL 23S rRNA m(2)G24 99.1 4.6E-10 9.9E-15 108.0 13.1 119 25-149 533-659 (702)
129 PF01135 PCMT: Protein-L-isoas 99.1 3.3E-10 7.3E-15 93.1 9.9 102 29-147 70-173 (209)
130 TIGR00563 rsmB ribosomal RNA s 99.1 1.2E-09 2.5E-14 99.6 14.3 115 31-149 238-371 (426)
131 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.1 2.7E-09 5.7E-14 89.9 15.1 143 4-146 26-199 (256)
132 PHA03411 putative methyltransf 99.1 5.5E-10 1.2E-14 94.5 10.4 102 31-145 64-182 (279)
133 COG2890 HemK Methylase of poly 99.1 1.6E-09 3.4E-14 93.1 13.2 115 34-157 113-251 (280)
134 PRK14902 16S rRNA methyltransf 99.1 2E-09 4.4E-14 98.5 14.4 113 30-148 249-381 (444)
135 PF01739 CheR: CheR methyltran 99.1 2.2E-09 4.9E-14 87.3 12.5 107 31-145 31-174 (196)
136 COG1092 Predicted SAM-dependen 99.1 1.7E-09 3.6E-14 96.3 12.3 130 24-156 211-346 (393)
137 TIGR00417 speE spermidine synt 99.1 3.6E-09 7.8E-14 90.7 13.9 111 31-148 72-188 (270)
138 PRK01581 speE spermidine synth 99.1 5.3E-09 1.1E-13 91.8 15.0 113 30-147 149-269 (374)
139 COG2518 Pcm Protein-L-isoaspar 99.1 2.2E-09 4.8E-14 87.0 11.7 107 23-147 63-170 (209)
140 COG2519 GCD14 tRNA(1-methylade 99.1 2.2E-09 4.8E-14 89.0 11.9 113 29-157 92-206 (256)
141 PLN02366 spermidine synthase 99.1 2E-09 4.4E-14 93.5 12.2 114 29-146 89-206 (308)
142 PRK10909 rsmD 16S rRNA m(2)G96 99.0 8.7E-09 1.9E-13 84.1 14.5 107 31-148 53-161 (199)
143 KOG1499 Protein arginine N-met 99.0 1.4E-09 3.1E-14 93.8 10.1 107 29-143 58-164 (346)
144 PHA03412 putative methyltransf 99.0 1.6E-09 3.5E-14 89.7 9.4 98 31-141 49-158 (241)
145 COG2263 Predicted RNA methylas 99.0 1.4E-09 3E-14 86.2 8.5 73 31-114 45-117 (198)
146 PF08704 GCD14: tRNA methyltra 99.0 8.1E-09 1.8E-13 86.7 12.6 122 24-157 33-157 (247)
147 PF00891 Methyltransf_2: O-met 99.0 3.7E-09 8E-14 89.0 10.3 96 31-145 100-198 (241)
148 PF02390 Methyltransf_4: Putat 99.0 6.8E-09 1.5E-13 84.6 11.4 115 31-149 17-136 (195)
149 PRK13168 rumA 23S rRNA m(5)U19 99.0 9.8E-09 2.1E-13 94.0 13.2 105 30-146 296-400 (443)
150 PF10294 Methyltransf_16: Puta 99.0 7.2E-09 1.6E-13 82.9 10.8 113 30-149 44-159 (173)
151 KOG2940 Predicted methyltransf 98.9 2E-09 4.4E-14 87.5 6.9 111 32-155 73-183 (325)
152 TIGR00095 RNA methyltransferas 98.9 2.3E-08 5.1E-13 81.1 13.1 113 31-148 49-161 (189)
153 PLN02476 O-methyltransferase 98.9 1.5E-08 3.2E-13 86.5 12.2 106 31-145 118-227 (278)
154 PF10672 Methyltrans_SAM: S-ad 98.9 1.3E-08 2.9E-13 87.2 12.0 120 26-150 119-242 (286)
155 PRK03612 spermidine synthase; 98.9 9E-09 2E-13 95.9 11.5 113 30-147 296-416 (521)
156 PF01596 Methyltransf_3: O-met 98.9 1.2E-08 2.5E-13 83.7 10.9 106 31-145 45-154 (205)
157 KOG2899 Predicted methyltransf 98.9 1.2E-08 2.6E-13 83.7 9.6 115 31-145 58-208 (288)
158 TIGR03439 methyl_EasF probable 98.9 1.3E-07 2.8E-12 82.5 16.6 114 28-145 73-196 (319)
159 PF12147 Methyltransf_20: Puta 98.9 8.2E-08 1.8E-12 81.2 14.3 112 31-146 135-249 (311)
160 PF05185 PRMT5: PRMT5 arginine 98.9 1.9E-08 4.2E-13 91.6 11.5 103 32-143 187-294 (448)
161 PRK10611 chemotaxis methyltran 98.9 2.4E-08 5.1E-13 85.8 11.4 107 32-145 116-261 (287)
162 PRK03522 rumB 23S rRNA methylu 98.9 1.3E-08 2.9E-13 89.1 9.9 102 31-146 173-274 (315)
163 PLN02672 methionine S-methyltr 98.9 2.1E-08 4.5E-13 99.2 12.1 113 32-149 119-281 (1082)
164 COG4122 Predicted O-methyltran 98.8 6.1E-08 1.3E-12 79.7 12.0 104 31-145 59-165 (219)
165 PF01170 UPF0020: Putative RNA 98.8 6.5E-08 1.4E-12 77.8 11.5 124 16-146 12-150 (179)
166 PF05148 Methyltransf_8: Hypot 98.8 1.9E-08 4E-13 81.3 7.9 90 30-148 71-160 (219)
167 COG1041 Predicted DNA modifica 98.8 2.9E-08 6.4E-13 86.2 9.4 111 29-147 195-311 (347)
168 KOG3420 Predicted RNA methylas 98.8 1.4E-08 3.1E-13 76.9 5.7 77 31-115 48-124 (185)
169 PF03602 Cons_hypoth95: Conser 98.8 8E-08 1.7E-12 77.5 10.4 113 31-149 42-156 (183)
170 PTZ00338 dimethyladenosine tra 98.8 4.4E-08 9.5E-13 84.7 9.2 87 18-113 23-109 (294)
171 COG0220 Predicted S-adenosylme 98.8 6E-08 1.3E-12 80.6 9.5 114 33-150 50-168 (227)
172 PRK00274 ksgA 16S ribosomal RN 98.8 1.4E-07 3E-12 81.0 12.1 74 29-113 40-113 (272)
173 COG1352 CheR Methylase of chem 98.7 2.8E-07 6E-12 78.3 13.7 125 13-145 78-240 (268)
174 PLN02589 caffeoyl-CoA O-methyl 98.7 1.4E-07 3.1E-12 79.4 11.8 106 31-145 79-189 (247)
175 PRK14896 ksgA 16S ribosomal RN 98.7 6.2E-08 1.4E-12 82.5 9.6 75 29-115 27-101 (258)
176 PF05219 DREV: DREV methyltran 98.7 4.7E-08 1E-12 81.6 8.5 95 32-147 95-189 (265)
177 PRK11727 23S rRNA mA1618 methy 98.7 1.8E-07 4E-12 81.5 12.4 100 16-117 94-201 (321)
178 TIGR00755 ksgA dimethyladenosi 98.7 2.1E-07 4.5E-12 79.0 12.3 71 21-95 18-89 (253)
179 TIGR00478 tly hemolysin TlyA f 98.7 8E-08 1.7E-12 80.0 9.2 95 31-145 75-170 (228)
180 KOG1500 Protein arginine N-met 98.7 1.6E-07 3.4E-12 80.6 10.9 105 31-145 177-281 (517)
181 COG3963 Phospholipid N-methylt 98.7 2.1E-07 4.5E-12 72.4 10.5 109 31-148 48-158 (194)
182 TIGR00479 rumA 23S rRNA (uraci 98.7 1.2E-07 2.7E-12 86.5 10.9 105 30-145 291-395 (431)
183 PRK04148 hypothetical protein; 98.7 3.6E-07 7.7E-12 69.4 11.2 96 31-149 16-112 (134)
184 KOG2352 Predicted spermine/spe 98.7 3E-07 6.5E-12 82.8 11.9 136 3-147 19-162 (482)
185 PF02475 Met_10: Met-10+ like- 98.6 7.6E-08 1.6E-12 78.5 6.2 100 28-142 98-198 (200)
186 TIGR02085 meth_trns_rumB 23S r 98.6 4.1E-07 8.9E-12 81.5 11.3 102 31-146 233-334 (374)
187 KOG3045 Predicted RNA methylas 98.6 2.9E-07 6.3E-12 76.4 9.3 88 30-148 179-266 (325)
188 PLN02823 spermine synthase 98.6 9.4E-07 2E-11 77.7 12.2 112 30-146 102-220 (336)
189 PRK04338 N(2),N(2)-dimethylgua 98.5 4.7E-07 1E-11 81.1 9.2 108 32-154 58-166 (382)
190 PRK11933 yebU rRNA (cytosine-C 98.5 1.7E-06 3.6E-11 79.4 12.9 113 30-148 112-244 (470)
191 PRK01544 bifunctional N5-gluta 98.5 1.2E-06 2.6E-11 81.5 11.7 114 31-149 347-465 (506)
192 PF11968 DUF3321: Putative met 98.5 1.3E-06 2.9E-11 71.0 10.6 114 15-150 34-153 (219)
193 PF07942 N2227: N2227-like pro 98.5 9.3E-06 2E-10 69.0 15.8 117 17-143 37-199 (270)
194 PF02384 N6_Mtase: N-6 DNA Met 98.5 9E-07 2E-11 77.3 9.6 115 31-149 46-186 (311)
195 KOG1661 Protein-L-isoaspartate 98.4 1E-06 2.3E-11 71.0 8.0 104 26-145 77-192 (237)
196 PRK00050 16S rRNA m(4)C1402 me 98.4 1.4E-06 3.1E-11 75.1 9.3 80 30-114 18-99 (296)
197 TIGR00308 TRM1 tRNA(guanine-26 98.4 3.9E-06 8.4E-11 75.0 12.4 105 32-150 45-151 (374)
198 KOG3178 Hydroxyindole-O-methyl 98.4 2.6E-06 5.6E-11 74.0 10.6 97 32-145 178-274 (342)
199 PF01728 FtsJ: FtsJ-like methy 98.4 4.8E-07 1E-11 72.8 5.8 107 31-149 23-142 (181)
200 KOG1331 Predicted methyltransf 98.4 3.5E-07 7.6E-12 77.1 4.9 100 30-146 44-143 (293)
201 KOG3191 Predicted N6-DNA-methy 98.4 5.5E-06 1.2E-10 65.4 11.2 116 32-156 44-181 (209)
202 COG0421 SpeE Spermidine syntha 98.4 4.8E-06 1.1E-10 71.4 11.4 109 33-148 78-192 (282)
203 KOG0820 Ribosomal RNA adenine 98.4 2.2E-06 4.7E-11 71.8 8.9 75 29-112 56-130 (315)
204 PF01564 Spermine_synth: Sperm 98.4 6.5E-06 1.4E-10 69.5 12.0 114 29-147 74-192 (246)
205 PF03141 Methyltransf_29: Puta 98.4 2.3E-07 4.9E-12 83.9 3.0 100 33-148 119-221 (506)
206 COG2520 Predicted methyltransf 98.4 2.8E-06 6.1E-11 74.3 9.7 107 27-147 184-290 (341)
207 KOG1269 SAM-dependent methyltr 98.4 7.5E-07 1.6E-11 78.9 6.2 118 18-145 94-214 (364)
208 COG0293 FtsJ 23S rRNA methylas 98.3 6.1E-06 1.3E-10 67.0 10.6 118 29-158 43-174 (205)
209 COG0500 SmtA SAM-dependent met 98.3 9.6E-06 2.1E-10 61.7 11.4 102 35-149 52-158 (257)
210 COG0742 N6-adenine-specific me 98.3 2.4E-05 5.1E-10 62.7 13.6 113 31-149 43-157 (187)
211 PRK05031 tRNA (uracil-5-)-meth 98.3 7.8E-06 1.7E-10 73.0 12.0 103 32-147 207-321 (362)
212 KOG1663 O-methyltransferase [S 98.3 1.3E-05 2.9E-10 65.7 11.8 107 31-145 73-182 (237)
213 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.7E-05 3.7E-10 76.7 14.2 130 17-150 174-351 (702)
214 PF09445 Methyltransf_15: RNA 98.3 1.9E-06 4E-11 67.8 6.2 75 34-112 2-76 (163)
215 TIGR02143 trmA_only tRNA (urac 98.3 8.1E-06 1.8E-10 72.6 11.1 58 33-92 199-256 (353)
216 PF08123 DOT1: Histone methyla 98.3 1.2E-05 2.7E-10 65.8 11.2 118 20-145 31-157 (205)
217 TIGR02987 met_A_Alw26 type II 98.3 8.5E-06 1.8E-10 76.3 11.1 81 31-113 31-120 (524)
218 COG2521 Predicted archaeal met 98.2 1.5E-06 3.3E-11 71.2 4.7 109 31-144 134-243 (287)
219 PRK00536 speE spermidine synth 98.2 2.6E-05 5.6E-10 66.2 11.8 99 30-147 71-172 (262)
220 KOG4589 Cell division protein 98.2 3.2E-05 6.9E-10 61.4 11.1 109 30-150 68-188 (232)
221 COG0030 KsgA Dimethyladenosine 98.2 1.1E-05 2.5E-10 67.9 9.0 76 29-113 28-103 (259)
222 PF02527 GidB: rRNA small subu 98.2 2.4E-05 5.2E-10 63.0 10.3 110 21-146 37-148 (184)
223 KOG2915 tRNA(1-methyladenosine 98.2 1.8E-05 3.9E-10 66.4 9.7 105 28-145 102-208 (314)
224 COG0116 Predicted N6-adenine-s 98.1 9.1E-05 2E-09 65.5 13.2 121 27-153 187-351 (381)
225 PF13679 Methyltransf_32: Meth 98.1 8.9E-05 1.9E-09 57.2 11.7 105 30-150 24-135 (141)
226 PF09243 Rsm22: Mitochondrial 98.1 3.3E-05 7.2E-10 66.3 10.0 119 31-160 33-156 (274)
227 PF04816 DUF633: Family of unk 98.0 0.0001 2.2E-09 60.4 11.2 110 35-156 1-111 (205)
228 PF04672 Methyltransf_19: S-ad 98.0 6.7E-05 1.5E-09 63.4 10.1 110 33-146 70-190 (267)
229 COG0144 Sun tRNA and rRNA cyto 98.0 0.00028 6E-09 62.9 14.2 124 22-149 145-291 (355)
230 COG2265 TrmA SAM-dependent met 98.0 5.8E-05 1.2E-09 68.7 9.9 112 31-156 293-405 (432)
231 PF01269 Fibrillarin: Fibrilla 97.9 0.00022 4.8E-09 58.5 11.7 106 29-146 71-178 (229)
232 PF00398 RrnaAD: Ribosomal RNA 97.9 0.00067 1.5E-08 57.9 14.3 86 20-112 18-104 (262)
233 PF06962 rRNA_methylase: Putat 97.9 0.00012 2.7E-09 55.9 8.6 87 56-148 1-94 (140)
234 PF03059 NAS: Nicotianamine sy 97.9 0.00028 6E-09 60.3 11.7 109 32-149 121-233 (276)
235 COG1189 Predicted rRNA methyla 97.8 0.00013 2.8E-09 60.3 9.0 99 31-146 79-178 (245)
236 PF05958 tRNA_U5-meth_tr: tRNA 97.8 0.00014 3E-09 64.7 10.0 57 33-91 198-254 (352)
237 COG3897 Predicted methyltransf 97.7 0.00018 3.8E-09 57.7 8.2 118 17-150 59-183 (218)
238 KOG2798 Putative trehalase [Ca 97.7 0.00047 1E-08 59.1 11.1 108 32-144 151-294 (369)
239 KOG2730 Methylase [General fun 97.7 3.3E-05 7.2E-10 62.9 4.0 101 32-139 95-195 (263)
240 COG0357 GidB Predicted S-adeno 97.7 0.00041 9E-09 57.1 9.9 105 25-145 60-167 (215)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00032 6.9E-09 60.6 9.7 114 30-148 84-221 (283)
242 KOG3201 Uncharacterized conser 97.7 8.3E-05 1.8E-09 57.7 4.9 120 31-158 29-152 (201)
243 PRK11760 putative 23S rRNA C24 97.7 0.00028 6.1E-09 61.7 8.8 94 29-145 209-304 (357)
244 PF05971 Methyltransf_10: Prot 97.6 0.0006 1.3E-08 58.8 10.4 100 17-117 86-189 (299)
245 PF04989 CmcI: Cephalosporin h 97.6 0.00033 7.1E-09 57.1 8.1 107 32-145 33-146 (206)
246 PF13578 Methyltransf_24: Meth 97.6 8.2E-05 1.8E-09 54.2 4.2 100 36-145 1-104 (106)
247 TIGR01444 fkbM_fam methyltrans 97.5 0.00029 6.4E-09 54.0 6.8 58 34-92 1-59 (143)
248 COG1889 NOP1 Fibrillarin-like 97.5 0.0046 1E-07 50.0 13.5 105 29-145 74-179 (231)
249 TIGR00006 S-adenosyl-methyltra 97.5 0.00076 1.6E-08 58.5 9.5 79 30-112 19-99 (305)
250 KOG1709 Guanidinoacetate methy 97.5 0.0013 2.8E-08 53.6 9.7 108 28-145 98-205 (271)
251 KOG3987 Uncharacterized conser 97.4 3.8E-05 8.2E-10 62.0 0.5 94 31-145 112-206 (288)
252 COG4076 Predicted RNA methylas 97.4 0.0005 1.1E-08 54.8 6.0 101 32-144 33-133 (252)
253 COG2384 Predicted SAM-dependen 97.3 0.0085 1.9E-07 49.1 12.7 112 25-149 10-122 (226)
254 COG0275 Predicted S-adenosylme 97.3 0.014 3.1E-07 50.1 14.4 59 30-90 22-82 (314)
255 COG4301 Uncharacterized conser 97.2 0.017 3.6E-07 48.3 13.8 107 32-145 79-192 (321)
256 PF11599 AviRa: RRNA methyltra 97.2 0.0085 1.8E-07 48.9 11.8 114 31-145 51-213 (246)
257 PF07091 FmrO: Ribosomal RNA m 97.2 0.0011 2.3E-08 55.5 6.8 80 29-117 103-183 (251)
258 KOG2187 tRNA uracil-5-methyltr 97.2 0.00064 1.4E-08 62.0 5.7 60 29-90 381-440 (534)
259 COG0286 HsdM Type I restrictio 97.2 0.0034 7.3E-08 58.4 10.4 118 31-149 186-329 (489)
260 COG4262 Predicted spermidine s 96.9 0.02 4.3E-07 50.5 11.8 112 32-148 290-409 (508)
261 KOG1122 tRNA and rRNA cytosine 96.9 0.013 2.8E-07 52.4 10.7 113 31-148 241-373 (460)
262 PF02005 TRM: N2,N2-dimethylgu 96.8 0.011 2.4E-07 53.1 10.2 109 31-152 49-160 (377)
263 COG4627 Uncharacterized protei 96.8 0.00047 1E-08 53.2 1.0 58 102-161 44-101 (185)
264 PF03492 Methyltransf_7: SAM d 96.8 0.017 3.7E-07 51.1 10.8 114 29-148 14-185 (334)
265 KOG1562 Spermidine synthase [A 96.6 0.02 4.4E-07 49.0 9.7 122 31-158 121-247 (337)
266 PRK11524 putative methyltransf 96.6 0.0077 1.7E-07 52.0 7.2 56 20-76 197-252 (284)
267 KOG1596 Fibrillarin and relate 96.5 0.018 3.8E-07 47.9 8.4 108 27-146 152-261 (317)
268 KOG3115 Methyltransferase-like 96.5 0.012 2.6E-07 47.7 7.0 46 32-77 61-107 (249)
269 PRK10742 putative methyltransf 96.4 0.026 5.5E-07 47.5 9.1 78 30-113 85-172 (250)
270 PF01555 N6_N4_Mtase: DNA meth 96.4 0.011 2.3E-07 48.7 6.5 53 19-72 179-231 (231)
271 PRK13699 putative methylase; P 96.3 0.016 3.5E-07 48.3 7.3 56 21-77 153-208 (227)
272 COG5459 Predicted rRNA methyla 96.3 0.016 3.6E-07 50.7 7.1 122 31-159 113-241 (484)
273 KOG1099 SAM-dependent methyltr 96.3 0.013 2.7E-07 48.4 6.0 106 32-149 42-166 (294)
274 PF01795 Methyltransf_5: MraW 96.2 0.013 2.9E-07 50.8 6.6 79 29-111 18-99 (310)
275 PLN02668 indole-3-acetate carb 96.1 0.1 2.2E-06 46.9 11.8 47 102-148 159-239 (386)
276 PF01861 DUF43: Protein of unk 96.1 0.58 1.2E-05 39.2 15.3 104 31-145 44-148 (243)
277 cd00315 Cyt_C5_DNA_methylase C 96.0 0.016 3.6E-07 49.7 6.2 71 34-115 2-72 (275)
278 KOG4058 Uncharacterized conser 96.0 0.093 2E-06 40.5 9.3 100 31-145 72-171 (199)
279 KOG2793 Putative N2,N2-dimethy 96.0 0.046 9.9E-07 46.0 8.4 111 31-148 86-201 (248)
280 COG1064 AdhP Zn-dependent alco 95.9 0.066 1.4E-06 47.2 9.4 97 26-145 161-258 (339)
281 KOG2198 tRNA cytosine-5-methyl 95.9 0.1 2.2E-06 46.2 10.2 123 29-152 153-302 (375)
282 COG3129 Predicted SAM-dependen 95.8 0.03 6.5E-07 46.3 6.3 86 31-117 78-165 (292)
283 PF06859 Bin3: Bicoid-interact 95.6 0.0065 1.4E-07 44.3 1.5 41 105-145 1-43 (110)
284 TIGR00027 mthyl_TIGR00027 meth 95.5 1.3 2.9E-05 37.7 18.9 111 33-149 83-200 (260)
285 KOG1253 tRNA methyltransferase 95.5 0.0058 1.3E-07 55.6 1.1 109 31-149 109-219 (525)
286 PF03141 Methyltransf_29: Puta 95.4 0.016 3.4E-07 53.1 3.8 108 33-158 367-477 (506)
287 COG1867 TRM1 N2,N2-dimethylgua 95.3 0.071 1.5E-06 47.1 7.3 125 12-150 32-158 (380)
288 KOG0822 Protein kinase inhibit 95.3 0.057 1.2E-06 49.8 6.8 118 18-144 350-476 (649)
289 COG1565 Uncharacterized conser 95.2 0.25 5.4E-06 43.7 10.3 60 18-77 64-132 (370)
290 COG4798 Predicted methyltransf 95.2 0.047 1E-06 44.0 5.3 105 29-145 46-165 (238)
291 PF11312 DUF3115: Protein of u 95.1 0.11 2.4E-06 45.1 7.8 113 33-145 88-241 (315)
292 PF07757 AdoMet_MTase: Predict 95.1 0.026 5.7E-07 41.0 3.4 32 31-63 58-89 (112)
293 PF03269 DUF268: Caenorhabditi 95.1 0.051 1.1E-06 42.5 5.0 104 32-149 2-114 (177)
294 KOG1501 Arginine N-methyltrans 95.0 0.047 1E-06 49.3 5.4 56 33-88 68-123 (636)
295 KOG1227 Putative methyltransfe 95.0 0.017 3.8E-07 49.4 2.6 96 31-141 194-290 (351)
296 PHA01634 hypothetical protein 94.9 0.086 1.9E-06 39.6 5.6 47 31-77 28-74 (156)
297 PF04445 SAM_MT: Putative SAM- 94.8 0.13 2.8E-06 42.9 7.2 75 33-113 77-159 (234)
298 COG3510 CmcI Cephalosporin hyd 94.7 0.31 6.7E-06 39.3 8.7 105 31-145 69-179 (237)
299 COG1063 Tdh Threonine dehydrog 94.7 0.29 6.2E-06 43.6 9.6 98 31-145 168-268 (350)
300 cd08283 FDH_like_1 Glutathione 94.6 0.09 2E-06 47.3 6.2 108 29-145 182-305 (386)
301 KOG2671 Putative RNA methylase 94.3 0.055 1.2E-06 47.3 4.0 114 29-148 206-356 (421)
302 PF03514 GRAS: GRAS domain fam 94.3 1.3 2.9E-05 39.8 13.0 127 31-159 110-260 (374)
303 PRK09424 pntA NAD(P) transhydr 94.0 0.28 6.1E-06 45.8 8.3 105 31-147 164-286 (509)
304 PF02254 TrkA_N: TrkA-N domain 93.9 0.76 1.7E-05 33.5 9.1 95 40-151 4-101 (116)
305 PF00145 DNA_methylase: C-5 cy 93.8 0.11 2.4E-06 45.1 5.2 69 34-114 2-70 (335)
306 PF10354 DUF2431: Domain of un 93.8 0.92 2E-05 35.9 9.9 108 38-148 3-127 (166)
307 PF04072 LCM: Leucine carboxyl 93.7 1.1 2.5E-05 35.8 10.5 100 31-133 77-183 (183)
308 TIGR00497 hsdM type I restrict 93.6 0.98 2.1E-05 42.3 11.3 115 31-149 217-358 (501)
309 PF02636 Methyltransf_28: Puta 93.4 0.17 3.8E-06 42.8 5.5 59 18-76 4-72 (252)
310 cd08254 hydroxyacyl_CoA_DH 6-h 93.1 0.95 2.1E-05 39.3 9.8 99 29-146 163-263 (338)
311 KOG2539 Mitochondrial/chloropl 92.9 0.64 1.4E-05 42.5 8.3 125 32-160 201-332 (491)
312 PRK09880 L-idonate 5-dehydroge 92.2 0.47 1E-05 41.8 6.8 96 30-145 168-265 (343)
313 KOG0821 Predicted ribosomal RN 91.8 0.5 1.1E-05 39.0 5.8 67 31-99 50-116 (326)
314 KOG2920 Predicted methyltransf 91.6 0.3 6.5E-06 41.7 4.5 51 18-68 103-153 (282)
315 TIGR00675 dcm DNA-methyltransf 91.6 0.31 6.8E-06 42.7 4.9 67 35-113 1-67 (315)
316 KOG2352 Predicted spermine/spe 91.5 1 2.2E-05 41.4 8.0 112 31-145 295-415 (482)
317 PTZ00357 methyltransferase; Pr 91.3 0.73 1.6E-05 44.3 7.1 107 33-141 702-830 (1072)
318 KOG1098 Putative SAM-dependent 91.3 0.21 4.5E-06 47.0 3.5 104 28-145 41-157 (780)
319 KOG0024 Sorbitol dehydrogenase 90.9 2.2 4.8E-05 37.4 9.1 102 30-147 168-274 (354)
320 PF12692 Methyltransf_17: S-ad 89.8 0.47 1E-05 36.6 3.7 104 32-145 29-133 (160)
321 KOG2651 rRNA adenine N-6-methy 89.7 1.4 3E-05 39.4 7.0 42 31-72 153-194 (476)
322 COG0270 Dcm Site-specific DNA 89.6 1.1 2.3E-05 39.5 6.5 104 32-145 3-115 (328)
323 TIGR00561 pntA NAD(P) transhyd 88.9 1.3 2.7E-05 41.5 6.5 101 31-143 163-281 (511)
324 PRK03659 glutathione-regulated 88.5 3.6 7.9E-05 39.4 9.7 104 33-153 401-505 (601)
325 cd05188 MDR Medium chain reduc 88.1 5.9 0.00013 32.8 9.8 98 30-146 133-232 (271)
326 cd08237 ribitol-5-phosphate_DH 88.0 2.9 6.3E-05 36.8 8.1 92 29-145 161-255 (341)
327 PF05206 TRM13: Methyltransfer 87.7 3.6 7.8E-05 35.0 8.1 114 30-149 17-143 (259)
328 PRK03562 glutathione-regulated 87.3 6.2 0.00013 38.1 10.4 102 32-151 400-503 (621)
329 TIGR02356 adenyl_thiF thiazole 87.2 13 0.00028 30.2 11.0 78 32-113 21-119 (202)
330 cd08281 liver_ADH_like1 Zinc-d 87.0 4.8 0.0001 35.8 9.1 98 29-145 189-289 (371)
331 PRK10458 DNA cytosine methylas 86.9 2.3 5E-05 39.4 7.0 59 32-93 88-146 (467)
332 cd08230 glucose_DH Glucose deh 86.8 5.5 0.00012 35.1 9.3 94 30-145 171-268 (355)
333 KOG1201 Hydroxysteroid 17-beta 86.7 7.5 0.00016 33.7 9.4 82 31-116 37-125 (300)
334 PF11899 DUF3419: Protein of u 86.2 2.2 4.8E-05 38.4 6.3 45 30-75 34-78 (380)
335 TIGR03451 mycoS_dep_FDH mycoth 85.8 7.3 0.00016 34.4 9.5 98 29-145 174-275 (358)
336 KOG2078 tRNA modification enzy 85.7 0.8 1.7E-05 41.4 3.2 62 28-90 246-308 (495)
337 TIGR02822 adh_fam_2 zinc-bindi 85.0 8.5 0.00018 33.7 9.5 90 29-145 163-253 (329)
338 PRK10669 putative cation:proto 84.9 9.9 0.00022 36.1 10.5 100 33-149 418-518 (558)
339 PRK08644 thiamine biosynthesis 84.8 19 0.00041 29.6 10.8 78 31-112 27-124 (212)
340 PF00107 ADH_zinc_N: Zinc-bind 84.6 3.3 7.1E-05 30.6 5.8 84 43-145 3-88 (130)
341 PRK05786 fabG 3-ketoacyl-(acyl 84.6 20 0.00044 29.2 11.1 109 32-145 5-134 (238)
342 PRK11524 putative methyltransf 84.3 1.3 2.8E-05 38.2 3.8 60 83-146 9-80 (284)
343 COG0863 DNA modification methy 82.9 4.4 9.5E-05 34.8 6.7 54 23-77 214-267 (302)
344 KOG1209 1-Acyl dihydroxyaceton 82.6 10 0.00022 31.5 8.0 82 31-120 6-96 (289)
345 cd08232 idonate-5-DH L-idonate 82.6 4.3 9.3E-05 35.3 6.6 96 31-146 165-262 (339)
346 PF06016 Reovirus_L2: Reovirus 82.6 1.5 3.2E-05 44.8 3.9 97 32-141 823-920 (1289)
347 PLN03154 putative allyl alcoho 82.4 14 0.00031 32.6 9.8 99 29-145 156-257 (348)
348 cd08239 THR_DH_like L-threonin 81.8 18 0.00038 31.5 10.2 98 29-145 161-261 (339)
349 cd00401 AdoHcyase S-adenosyl-L 81.8 6.2 0.00014 36.0 7.4 87 31-146 201-289 (413)
350 cd08234 threonine_DH_like L-th 81.6 13 0.00028 32.1 9.3 97 30-145 158-256 (334)
351 TIGR03366 HpnZ_proposed putati 81.3 7.7 0.00017 33.0 7.5 97 30-145 119-217 (280)
352 PF05711 TylF: Macrocin-O-meth 81.3 23 0.0005 29.9 10.1 106 33-149 76-215 (248)
353 cd01487 E1_ThiF_like E1_ThiF_l 81.0 25 0.00054 27.9 9.8 31 34-64 1-33 (174)
354 PF11899 DUF3419: Protein of u 81.0 3.5 7.5E-05 37.2 5.4 61 82-148 276-336 (380)
355 PRK08267 short chain dehydroge 80.3 32 0.0007 28.5 11.1 77 34-115 3-87 (260)
356 PLN02740 Alcohol dehydrogenase 79.5 15 0.00033 32.8 9.1 100 29-145 196-299 (381)
357 PRK06701 short chain dehydroge 79.4 38 0.00082 28.9 11.3 110 32-145 46-180 (290)
358 COG1255 Uncharacterized protei 79.3 13 0.00029 27.5 6.9 82 33-139 15-97 (129)
359 TIGR02354 thiF_fam2 thiamine b 79.2 28 0.00061 28.3 9.8 97 32-138 21-137 (200)
360 COG3315 O-Methyltransferase in 78.9 43 0.00093 29.1 16.0 110 33-147 94-210 (297)
361 PRK13699 putative methylase; P 78.8 2.6 5.7E-05 35.1 3.7 23 123-145 49-71 (227)
362 TIGR02825 B4_12hDH leukotriene 77.6 26 0.00057 30.3 9.8 98 29-145 136-236 (325)
363 PRK09496 trkA potassium transp 77.0 27 0.00059 31.9 10.2 95 34-146 2-99 (453)
364 TIGR01202 bchC 2-desacetyl-2-h 76.6 10 0.00022 32.8 6.9 85 31-145 144-230 (308)
365 PRK07063 short chain dehydroge 76.1 29 0.00063 28.8 9.4 82 32-115 7-96 (260)
366 cd08293 PTGR2 Prostaglandin re 75.6 25 0.00053 30.6 9.2 94 33-145 156-253 (345)
367 cd00757 ThiF_MoeB_HesA_family 75.0 32 0.0007 28.4 9.2 78 32-113 21-119 (228)
368 PRK01747 mnmC bifunctional tRN 74.9 18 0.0004 35.1 8.8 119 31-157 57-216 (662)
369 cd05278 FDH_like Formaldehyde 74.9 31 0.00068 29.9 9.7 98 29-145 165-266 (347)
370 PF03446 NAD_binding_2: NAD bi 74.8 10 0.00022 29.5 5.9 101 34-159 3-107 (163)
371 cd08245 CAD Cinnamyl alcohol d 74.8 43 0.00093 28.8 10.5 95 29-145 160-255 (330)
372 PRK08265 short chain dehydroge 74.7 49 0.0011 27.6 10.6 76 32-114 6-89 (261)
373 cd08294 leukotriene_B4_DH_like 74.2 31 0.00067 29.6 9.4 97 29-145 141-240 (329)
374 TIGR03201 dearomat_had 6-hydro 74.1 11 0.00024 33.1 6.6 44 29-72 164-208 (349)
375 cd08238 sorbose_phosphate_red 74.0 36 0.00078 30.8 10.0 107 29-145 173-287 (410)
376 PRK12475 thiamine/molybdopteri 73.9 41 0.00089 29.8 10.1 79 31-113 23-124 (338)
377 PRK05854 short chain dehydroge 73.9 32 0.0007 29.8 9.4 83 31-115 13-103 (313)
378 cd08295 double_bond_reductase_ 73.8 32 0.0007 29.9 9.5 99 29-145 149-250 (338)
379 COG1568 Predicted methyltransf 73.8 34 0.00073 29.6 8.9 107 32-149 153-263 (354)
380 COG1748 LYS9 Saccharopine dehy 73.6 19 0.0004 32.6 7.8 72 33-113 2-76 (389)
381 cd00755 YgdL_like Family of ac 73.3 46 0.00099 27.8 9.7 79 32-113 11-110 (231)
382 PRK10309 galactitol-1-phosphat 73.0 34 0.00075 29.8 9.5 98 29-145 158-259 (347)
383 PRK05867 short chain dehydroge 72.9 44 0.00096 27.6 9.7 82 31-115 8-96 (253)
384 COG0686 Ald Alanine dehydrogen 72.8 9.9 0.00021 33.3 5.6 104 31-149 167-271 (371)
385 PRK09496 trkA potassium transp 72.6 53 0.0012 29.9 10.9 72 31-112 230-304 (453)
386 PLN02827 Alcohol dehydrogenase 72.2 30 0.00065 30.9 9.0 100 29-145 191-294 (378)
387 cd08261 Zn_ADH7 Alcohol dehydr 72.0 14 0.00031 32.1 6.8 98 29-145 157-257 (337)
388 cd08255 2-desacetyl-2-hydroxye 72.0 23 0.0005 29.6 7.9 93 29-145 95-189 (277)
389 PRK12939 short chain dehydroge 72.0 53 0.0011 26.8 10.5 79 32-114 7-93 (250)
390 cd08278 benzyl_alcohol_DH Benz 71.9 45 0.00097 29.5 10.0 98 29-145 184-284 (365)
391 PRK07688 thiamine/molybdopteri 71.9 52 0.0011 29.2 10.2 78 32-113 24-124 (339)
392 PRK05597 molybdopterin biosynt 71.4 48 0.001 29.6 10.0 79 31-113 27-126 (355)
393 PRK07062 short chain dehydroge 71.2 42 0.00091 27.9 9.3 83 31-115 7-97 (265)
394 PF02737 3HCDH_N: 3-hydroxyacy 71.1 51 0.0011 26.2 9.2 95 34-145 1-113 (180)
395 PRK07533 enoyl-(acyl carrier p 71.0 60 0.0013 27.0 12.4 81 31-115 9-98 (258)
396 PRK07066 3-hydroxybutyryl-CoA 70.7 32 0.00069 30.3 8.5 106 33-145 8-117 (321)
397 PRK09072 short chain dehydroge 70.5 61 0.0013 26.9 10.8 79 32-115 5-90 (263)
398 PRK07502 cyclohexadienyl dehyd 70.5 40 0.00087 29.2 9.2 89 33-144 7-98 (307)
399 PF03686 UPF0146: Uncharacteri 70.5 11 0.00024 28.3 4.7 91 32-149 14-105 (127)
400 KOG2013 SMT3/SUMO-activating c 70.4 8.5 0.00018 35.6 4.9 78 31-111 11-109 (603)
401 cd08285 NADP_ADH NADP(H)-depen 70.3 48 0.001 29.0 9.8 98 29-145 164-265 (351)
402 PRK07417 arogenate dehydrogena 70.2 45 0.00097 28.5 9.3 84 34-142 2-87 (279)
403 PRK06035 3-hydroxyacyl-CoA deh 70.2 19 0.0004 31.0 7.0 99 33-149 4-123 (291)
404 PRK08324 short chain dehydroge 70.1 37 0.00081 33.1 9.7 111 31-145 421-556 (681)
405 PLN02586 probable cinnamyl alc 69.8 30 0.00066 30.6 8.4 94 30-145 182-277 (360)
406 PRK10083 putative oxidoreducta 69.7 47 0.001 28.7 9.6 98 29-145 158-258 (339)
407 cd08236 sugar_DH NAD(P)-depend 69.3 43 0.00092 29.1 9.2 98 29-145 157-257 (343)
408 TIGR02819 fdhA_non_GSH formald 68.9 46 0.001 30.0 9.5 108 29-145 183-298 (393)
409 PRK08217 fabG 3-ketoacyl-(acyl 68.6 40 0.00086 27.6 8.5 79 32-114 5-91 (253)
410 PRK08762 molybdopterin biosynt 68.6 56 0.0012 29.3 9.9 79 31-113 134-233 (376)
411 PRK06128 oxidoreductase; Provi 68.2 76 0.0017 27.1 11.1 110 32-145 55-190 (300)
412 COG0569 TrkA K+ transport syst 67.8 23 0.00051 29.3 6.8 70 34-113 2-74 (225)
413 KOG3924 Putative protein methy 67.7 97 0.0021 28.1 14.1 120 18-145 179-307 (419)
414 PRK09242 tropinone reductase; 67.6 59 0.0013 26.8 9.4 84 31-115 8-98 (257)
415 PRK06125 short chain dehydroge 67.5 56 0.0012 27.1 9.2 81 32-115 7-91 (259)
416 PRK06197 short chain dehydroge 67.3 56 0.0012 28.0 9.4 83 31-115 15-105 (306)
417 KOG0023 Alcohol dehydrogenase, 67.1 47 0.001 29.4 8.5 103 24-145 174-278 (360)
418 PF00106 adh_short: short chai 66.7 41 0.00089 25.5 7.7 80 34-116 2-91 (167)
419 COG0604 Qor NADPH:quinone redu 66.6 17 0.00037 31.9 6.1 99 29-147 140-242 (326)
420 PF05050 Methyltransf_21: Meth 66.1 13 0.00028 28.4 4.7 37 37-73 1-42 (167)
421 PRK05876 short chain dehydroge 66.0 61 0.0013 27.4 9.2 80 32-115 6-93 (275)
422 PRK08251 short chain dehydroge 65.9 65 0.0014 26.3 9.3 81 33-115 3-91 (248)
423 PRK07904 short chain dehydroge 65.7 54 0.0012 27.2 8.8 82 31-115 7-97 (253)
424 PRK08340 glucose-1-dehydrogena 65.6 46 0.001 27.6 8.4 78 34-115 2-86 (259)
425 PRK07890 short chain dehydroge 65.3 56 0.0012 26.8 8.8 80 32-115 5-92 (258)
426 PRK07819 3-hydroxybutyryl-CoA 65.0 25 0.00054 30.3 6.7 96 33-144 6-119 (286)
427 COG5379 BtaA S-adenosylmethion 65.0 17 0.00037 31.6 5.4 44 31-75 63-106 (414)
428 cd08240 6_hydroxyhexanoate_dh_ 65.0 68 0.0015 27.9 9.7 96 31-145 175-273 (350)
429 COG0287 TyrA Prephenate dehydr 64.8 65 0.0014 27.8 9.1 104 33-158 4-110 (279)
430 PRK06194 hypothetical protein; 64.6 62 0.0013 27.2 9.1 80 32-115 6-93 (287)
431 PRK05690 molybdopterin biosynt 64.6 77 0.0017 26.6 9.4 79 31-113 31-130 (245)
432 PF01210 NAD_Gly3P_dh_N: NAD-d 64.3 26 0.00056 27.1 6.1 95 34-145 1-102 (157)
433 PRK07097 gluconate 5-dehydroge 64.3 66 0.0014 26.8 9.1 82 31-115 9-97 (265)
434 PRK08223 hypothetical protein; 64.1 46 0.00099 28.8 8.0 78 31-112 26-124 (287)
435 PF02153 PDH: Prephenate dehyd 64.1 31 0.00068 29.1 7.0 88 47-158 3-91 (258)
436 PRK07576 short chain dehydroge 64.0 85 0.0018 26.2 11.6 79 31-113 8-94 (264)
437 TIGR02818 adh_III_F_hyde S-(hy 64.0 69 0.0015 28.4 9.6 100 29-145 183-286 (368)
438 PRK07478 short chain dehydroge 64.0 71 0.0015 26.3 9.2 81 32-115 6-93 (254)
439 PRK06124 gluconate 5-dehydroge 63.8 71 0.0015 26.3 9.2 81 31-115 10-98 (256)
440 PRK09260 3-hydroxybutyryl-CoA 63.5 25 0.00055 30.1 6.5 95 34-144 3-115 (288)
441 PF07109 Mg-por_mtran_C: Magne 63.0 53 0.0012 23.5 7.4 76 115-238 6-81 (97)
442 PRK09422 ethanol-active dehydr 62.9 81 0.0018 27.2 9.7 98 29-145 160-260 (338)
443 PRK06172 short chain dehydroge 62.7 73 0.0016 26.2 9.0 80 32-115 7-94 (253)
444 PRK07035 short chain dehydroge 62.3 81 0.0018 25.8 9.2 80 32-114 8-94 (252)
445 TIGR00006 S-adenosyl-methyltra 62.0 18 0.00038 31.7 5.1 35 123-157 217-253 (305)
446 PRK05866 short chain dehydroge 61.7 79 0.0017 27.0 9.3 80 32-115 40-127 (293)
447 PRK07677 short chain dehydroge 61.5 65 0.0014 26.5 8.5 78 33-114 2-87 (252)
448 PRK12826 3-ketoacyl-(acyl-carr 61.0 89 0.0019 25.4 12.5 80 32-115 6-93 (251)
449 cd08300 alcohol_DH_class_III c 60.9 89 0.0019 27.6 9.7 100 29-145 184-287 (368)
450 PRK07231 fabG 3-ketoacyl-(acyl 60.9 90 0.002 25.4 11.8 79 32-115 5-91 (251)
451 PRK08339 short chain dehydroge 60.8 77 0.0017 26.5 8.9 83 31-115 7-95 (263)
452 TIGR00936 ahcY adenosylhomocys 60.8 35 0.00075 31.1 7.0 87 30-145 193-281 (406)
453 cd00650 LDH_MDH_like NAD-depen 60.7 64 0.0014 27.2 8.4 89 55-152 27-125 (263)
454 PRK06940 short chain dehydroge 60.2 67 0.0015 27.1 8.5 79 34-116 4-87 (275)
455 PRK07024 short chain dehydroge 59.9 66 0.0014 26.6 8.3 78 33-115 3-88 (257)
456 PLN02780 ketoreductase/ oxidor 59.6 61 0.0013 28.3 8.2 60 32-92 53-115 (320)
457 PRK08213 gluconate 5-dehydroge 59.5 96 0.0021 25.6 9.2 81 31-115 11-99 (259)
458 PRK12829 short chain dehydroge 59.5 63 0.0014 26.6 8.1 78 31-114 10-95 (264)
459 PRK06484 short chain dehydroge 59.3 1.4E+02 0.003 27.8 11.1 108 32-145 269-399 (520)
460 cd08243 quinone_oxidoreductase 59.2 1.1E+02 0.0023 25.9 9.7 96 29-145 140-237 (320)
461 PRK05476 S-adenosyl-L-homocyst 59.1 34 0.00073 31.4 6.6 86 31-145 211-298 (425)
462 PRK08589 short chain dehydroge 59.1 92 0.002 26.1 9.1 80 32-115 6-92 (272)
463 KOG3673 FtsJ-like RNA methyltr 58.9 57 0.0012 30.9 7.9 44 119-162 364-421 (845)
464 PF02086 MethyltransfD12: D12 58.9 15 0.00031 30.8 4.1 57 15-75 7-63 (260)
465 cd08277 liver_alcohol_DH_like 58.8 91 0.002 27.5 9.4 100 29-145 182-285 (365)
466 PRK07814 short chain dehydroge 58.8 79 0.0017 26.3 8.6 80 31-114 9-96 (263)
467 cd05564 PTS_IIB_chitobiose_lic 58.6 26 0.00055 24.8 4.7 60 68-145 17-76 (96)
468 cd08242 MDR_like Medium chain 58.5 62 0.0014 27.7 8.1 91 29-145 153-244 (319)
469 PRK05600 thiamine biosynthesis 58.5 1.2E+02 0.0025 27.4 9.9 79 31-113 40-139 (370)
470 TIGR02355 moeB molybdopterin s 58.1 1.1E+02 0.0024 25.6 9.3 32 32-63 24-57 (240)
471 cd05285 sorbitol_DH Sorbitol d 58.1 38 0.00081 29.5 6.7 99 29-146 160-265 (343)
472 PRK00050 16S rRNA m(4)C1402 me 58.0 23 0.0005 30.8 5.1 34 123-156 213-248 (296)
473 PRK08862 short chain dehydroge 57.9 79 0.0017 25.9 8.3 80 32-114 5-92 (227)
474 cd08233 butanediol_DH_like (2R 57.5 1.2E+02 0.0027 26.3 10.0 98 29-145 170-271 (351)
475 PRK07791 short chain dehydroge 57.5 92 0.002 26.4 8.9 82 31-115 5-102 (286)
476 TIGR00518 alaDH alanine dehydr 57.4 41 0.00089 30.2 6.9 101 31-148 166-269 (370)
477 PLN02514 cinnamyl-alcohol dehy 57.4 83 0.0018 27.7 8.9 95 30-145 179-274 (357)
478 PF01795 Methyltransf_5: MraW 57.3 15 0.00033 32.1 4.0 35 123-157 218-254 (310)
479 PRK07326 short chain dehydroge 57.3 1E+02 0.0022 24.9 10.8 78 32-114 6-91 (237)
480 PRK07109 short chain dehydroge 56.9 1.4E+02 0.0029 26.2 11.7 80 32-115 8-95 (334)
481 KOG0022 Alcohol dehydrogenase, 56.9 23 0.00051 31.1 4.9 44 30-73 191-236 (375)
482 PRK07523 gluconate 5-dehydroge 56.9 1.1E+02 0.0024 25.1 9.3 81 31-115 9-97 (255)
483 PRK08306 dipicolinate synthase 56.6 42 0.0009 29.1 6.6 89 31-145 151-240 (296)
484 KOG2912 Predicted DNA methylas 56.4 38 0.00081 29.9 6.0 95 18-114 87-187 (419)
485 PRK05808 3-hydroxybutyryl-CoA 56.3 31 0.00068 29.4 5.8 98 34-149 5-120 (282)
486 PRK09186 flagellin modificatio 56.3 1E+02 0.0022 25.2 8.9 80 32-113 4-91 (256)
487 PRK06153 hypothetical protein; 56.2 1.3E+02 0.0029 27.3 9.7 32 32-63 176-209 (393)
488 PRK06113 7-alpha-hydroxysteroi 56.1 1.1E+02 0.0024 25.1 9.1 81 31-115 10-98 (255)
489 PRK07411 hypothetical protein; 55.4 1.3E+02 0.0029 27.1 9.9 78 32-113 38-136 (390)
490 PLN02494 adenosylhomocysteinas 55.3 36 0.00078 31.7 6.2 89 31-147 253-342 (477)
491 PRK08293 3-hydroxybutyryl-CoA 55.1 48 0.001 28.4 6.8 94 33-142 4-116 (287)
492 PRK06139 short chain dehydroge 54.8 99 0.0021 27.1 8.8 80 32-115 7-94 (330)
493 PRK07806 short chain dehydroge 54.7 1.2E+02 0.0025 24.8 12.6 110 32-145 6-133 (248)
494 PLN02178 cinnamyl-alcohol dehy 54.7 1E+02 0.0022 27.5 9.0 94 30-145 177-272 (375)
495 PRK07530 3-hydroxybutyryl-CoA 54.6 1.3E+02 0.0027 25.8 9.3 94 33-143 5-116 (292)
496 PRK08643 acetoin reductase; Va 54.5 1.2E+02 0.0026 24.9 9.3 78 33-114 3-88 (256)
497 COG1893 ApbA Ketopantoate redu 54.2 1.2E+02 0.0026 26.5 9.0 96 33-145 1-100 (307)
498 PRK06500 short chain dehydroge 54.1 1.2E+02 0.0026 24.7 10.2 77 32-115 6-90 (249)
499 PRK05396 tdh L-threonine 3-deh 53.2 1.1E+02 0.0024 26.4 8.9 99 30-147 162-264 (341)
500 COG1086 Predicted nucleoside-d 53.2 1.8E+02 0.0039 27.8 10.3 84 32-118 250-338 (588)
No 1
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=100.00 E-value=1e-47 Score=321.21 Aligned_cols=229 Identities=35% Similarity=0.585 Sum_probs=199.7
Q ss_pred CCCcch---HHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-----
Q 025059 7 PRSELT---HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----- 78 (258)
Q Consensus 7 ~~~~~~---~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----- 78 (258)
.|+.|| +++++||||++||+.|.+++..++|||||.|+++.+|-..+++.++|+||++.+|++|++|+.+..
T Consensus 90 ~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~ 169 (389)
T KOG1975|consen 90 KRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK 169 (389)
T ss_pred hhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence 466666 445789999999999999999999999999999999999999999999999999999999997642
Q ss_pred CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059 79 KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (258)
Q Consensus 79 ~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~ 158 (258)
..+.+.|+.+|+....+...++.++.+||+|+|+|++||+|++.+.++.++.|++++|+|||+||+|+|+++.|.+++++
T Consensus 170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 23458999999988777666654555699999999999999999999999999999999999999999999999999986
Q ss_pred hHHhhhcCCCCCCCCCCCCcccCeeEEEEecccC---CCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEE
Q 025059 159 NVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV 235 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~---~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~ 235 (258)
. . ...|||+ +|+|+|+.+. ...|+||.+|.|+|++++. ||||+|+++.|..+++++|++++
T Consensus 250 ~------e-----~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv 313 (389)
T KOG1975|consen 250 G------E-----VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELV 313 (389)
T ss_pred c------c-----chhhcce----eeeEeeeeecccccCCCCccceEEEEcccccC-CcceeeehHHHHHHHHhcCcEEE
Confidence 3 1 1356665 6777776432 2279999999999999875 99999999999999999999999
Q ss_pred EeCChhHHHHhccCCC
Q 025059 236 EIQNLNEFYDDNRHAD 251 (258)
Q Consensus 236 ~~~~f~~~~~~~~~~~ 251 (258)
..++|.+||+++.++-
T Consensus 314 ~~k~F~df~~e~~~~~ 329 (389)
T KOG1975|consen 314 FVKPFADFYEEELKKN 329 (389)
T ss_pred EeccHHHHHHHhcccc
Confidence 9999999999998764
No 2
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=100.00 E-value=3.8e-47 Score=330.83 Aligned_cols=234 Identities=39% Similarity=0.707 Sum_probs=187.6
Q ss_pred CCCcch---HHhHHHHHHHHHHHHhcC------CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh-
Q 025059 7 PRSELT---HHRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN- 76 (258)
Q Consensus 7 ~~~~~~---~~~~~~~~k~~li~~~~~------~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~- 76 (258)
.|..|+ +++++||||++||+.+++ ++.+|||||||.|+++.+|...+...++|+|||..+|++|++|+..
T Consensus 29 ~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 29 ERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred hhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 345553 455789999999999999 8999999999999999999999999999999999999999999932
Q ss_pred --------cCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 77 --------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 77 --------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
....+.+.|+.+|+....+...+..+..+||+|+|+|++||+|++.+.++.+|.++++.|+|||+||+|+|+
T Consensus 109 ~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 109 KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 122467899999998877766664445799999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHH
Q 025059 149 SSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAR 228 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~ 228 (258)
++.|.+++++... ...+..+++++|+|+|+.+ +..|.||.+|.|+|++++++++||||+++.|+++|+
T Consensus 189 ~~~i~~~l~~~~~-----------~~~~~~~gN~~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~ 256 (331)
T PF03291_consen 189 SDEIVKRLREKKS-----------NSEKKKFGNSVYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAK 256 (331)
T ss_dssp HHHHHCCHHC-EE-----------ECCCSCSETSSEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHH
T ss_pred HHHHHHHHHhhcc-----------cccccccCCccEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHH
Confidence 9999887775211 0122334456799999976 577899999999999999999999999999999999
Q ss_pred HcCcEEEEeCChhHHHHhccCCCc
Q 025059 229 EAGLEYVEIQNLNEFYDDNRHADE 252 (258)
Q Consensus 229 ~~Gf~~~~~~~f~~~~~~~~~~~~ 252 (258)
++||++++..+|.+||+++.+..+
T Consensus 257 eyGLeLV~~~~F~ef~~e~~~~~~ 280 (331)
T PF03291_consen 257 EYGLELVEKKNFHEFYEEEKNKYE 280 (331)
T ss_dssp HTTEEEEEEEEHHHHHHHHCCCCH
T ss_pred HcCCEEEEeCChHHHHHHhccCch
Confidence 999999999999999998776654
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.92 E-value=6.3e-25 Score=183.40 Aligned_cols=180 Identities=22% Similarity=0.305 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 95 (258)
-|.+..+-.....++.+|||+|||||..+..+++. +.++++|+|+|+.|++.|+++....+.. +++++++|+.+.++
T Consensus 34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence 45443332223457899999999999988888775 3369999999999999999999876544 89999999999888
Q ss_pred hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHH---HHHHhHHhhhcCCCC
Q 025059 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWA---KYQKNVEAYHNRSSS 169 (258)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~---~~~~~~~~~~~~~~~ 169 (258)
++++||+|+|.+++|++ ++...+++++.|+|||||.+++. .|....+.. .|.+.+.|..+
T Consensus 113 ------~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g---- 178 (233)
T PF01209_consen 113 ------PDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIG---- 178 (233)
T ss_dssp -------TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------
T ss_pred ------CCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccc----
Confidence 78999999999999973 34778999999999999999877 444433322 22222222111
Q ss_pred CCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCCh
Q 025059 170 MKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (258)
Q Consensus 170 ~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f 240 (258)
.- + ..-...|.| |.+|+.. +++++++.++++++||+.++..++
T Consensus 179 -------~l---------~-------~~~~~~Y~y-L~~Si~~----f~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 179 -------RL---------L-------SGDREAYRY-LPESIRR----FPSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp -----------------------------------------------------------------------
T ss_pred -------cc---------c-------ccccccccc-ccccccc----cccccccccccccccccccccccc
Confidence 00 0 000014666 7777754 789999999999999998876554
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=2.2e-24 Score=178.74 Aligned_cols=177 Identities=21% Similarity=0.304 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (258)
.|-+.........||.+|||+|||||..+..+++. +.++++|+|+|+.||+.|+++....+.. .+.|+++|+.+.|+
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf- 115 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPF- 115 (238)
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCC-
Confidence 56554443334447999999999999999999887 5579999999999999999999876544 39999999999998
Q ss_pred hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHH---h-HHhhhcCCCC
Q 025059 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQK---N-VEAYHNRSSS 169 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~---~-~~~~~~~~~~ 169 (258)
++++||+|++.+++++ ..+.+.+|+++.|+|||||.+++. .|....+...|.. + +.|.
T Consensus 116 -----~D~sFD~vt~~fglrn----v~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~------ 180 (238)
T COG2226 116 -----PDNSFDAVTISFGLRN----VTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPL------ 180 (238)
T ss_pred -----CCCccCEEEeeehhhc----CCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhh------
Confidence 8999999999999998 446899999999999999998887 3333344333332 2 3332
Q ss_pred CCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEe
Q 025059 170 MKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237 (258)
Q Consensus 170 ~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~ 237 (258)
+|..+ ... ...|.| |.+|+.. +++.+++.++++++||+.+..
T Consensus 181 -----~g~~~-------~~~---------~~~y~y-L~eSi~~----~p~~~~l~~~~~~~gf~~i~~ 222 (238)
T COG2226 181 -----IGKLV-------AKD---------AEAYEY-LAESIRR----FPDQEELKQMIEKAGFEEVRY 222 (238)
T ss_pred -----hceee-------ecC---------hHHHHH-HHHHHHh----CCCHHHHHHHHHhcCceEEee
Confidence 12110 000 113555 7676644 789999999999999998863
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.84 E-value=2.4e-20 Score=152.55 Aligned_cols=170 Identities=17% Similarity=0.245 Sum_probs=127.9
Q ss_pred HHHHHHHhcC-CCCEEEEEcCCCCccHHHHHHc-C------CCeEEEEecChhHHHHHHHHHHhcCCCc--eeEEEEcCC
Q 025059 21 KTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADP 90 (258)
Q Consensus 21 k~~li~~~~~-~~~~VLDlGcG~G~~~~~~~~~-~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~d~ 90 (258)
|..++...-+ ++++|||+|||||..+..+.+. + .++|+++|+|++||+.+++|....++.. .+.++++|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 4444444333 6799999999999999888776 1 2689999999999999999986654422 489999999
Q ss_pred CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc---hHHHHHHHHhHHhhhcCC
Q 025059 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQKNVEAYHNRS 167 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~---~~~~~~~~~~~~~~~~~~ 167 (258)
.+.++ ++.+||..++.|++++ ..+..+.++++.|+|||||.|.+.-.+. +.+...|..
T Consensus 169 E~LpF------dd~s~D~yTiafGIRN----~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~--------- 229 (296)
T KOG1540|consen 169 EDLPF------DDDSFDAYTIAFGIRN----VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ--------- 229 (296)
T ss_pred ccCCC------CCCcceeEEEecceec----CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh---------
Confidence 99998 7999999999999988 4457889999999999999998774433 233333322
Q ss_pred CCCCCCCCCCcccCeeEEEEecccCCCCCCcee-------ceEEEEccCccCCCccccchHHHHHHHHHcCcEEEE
Q 025059 168 SSMKPNLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE 236 (258)
Q Consensus 168 ~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~-------~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~ 236 (258)
|+ | +.+|..|. .|+| |.+|++. +.+.++|..+.+++||..+.
T Consensus 230 ----------------ys--f----~VlpvlG~~iagd~~sYqY-LveSI~r----fp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 230 ----------------YS--F----DVLPVLGEIIAGDRKSYQY-LVESIRR----FPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred ----------------hh--h----hhhchhhHhhhhhHhhhhh-HHhhhhc----CCCHHHHHHHHHHcCCcccc
Confidence 10 1 12233332 4666 7777755 77899999999999999885
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.84 E-value=6.5e-20 Score=159.68 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=115.7
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||||||+|.++..++..+. +|+|+|+|++|++.|+++........++.++++|+.+.++ .+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence 467999999999999988877554 8999999999999999886544322368899999765443 467999999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecc
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV 190 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~ 190 (258)
|..++++ ..+...+++++.++|||||.+++++++..... +.... .+. .|-..
T Consensus 204 ~~~vLeH----v~d~~~~L~~l~r~LkPGG~liist~nr~~~~--~~~~i--------------~~~-----eyi~~--- 255 (322)
T PLN02396 204 SLEVIEH----VANPAEFCKSLSALTIPNGATVLSTINRTMRA--YASTI--------------VGA-----EYILR--- 255 (322)
T ss_pred EhhHHHh----cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHH--HHHhh--------------hhH-----HHHHh---
Confidence 9998887 33467899999999999999999988864321 11000 000 00000
Q ss_pred cCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059 191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (258)
Q Consensus 191 ~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~ 241 (258)
..|. | ......+++++++.++++++||++++...+.
T Consensus 256 ---~lp~-g-----------th~~~~f~tp~eL~~lL~~aGf~i~~~~G~~ 291 (322)
T PLN02396 256 ---WLPK-G-----------THQWSSFVTPEELSMILQRASVDVKEMAGFV 291 (322)
T ss_pred ---cCCC-C-----------CcCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence 0010 1 0111237899999999999999999887765
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.82 E-value=1.3e-19 Score=154.36 Aligned_cols=110 Identities=19% Similarity=0.151 Sum_probs=89.7
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHh--cCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
..++.+|||+|||+|..+..++.. + ..+++|+|+|++|++.|+++... .....++.++++|+.+.++ +++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~ 144 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDC 144 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCC
Confidence 347889999999999988877765 3 35899999999999999887642 1112268999999988776 678
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+||+|++.+++|+. ++...+++++.++|||||.+++....
T Consensus 145 sfD~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 145 YFDAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CEeEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999999999873 35788999999999999999888544
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=1.1e-20 Score=154.51 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=127.4
Q ss_pred CcchHHhHH----HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeE
Q 025059 9 SELTHHRLY----EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE 84 (258)
Q Consensus 9 ~~~~~~~~~----~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 84 (258)
...|.++++ +|++...-.++.-++.+|||+|||.|.++..+++.+. .|+|+|+++.+|+.|+.+....+. .++
T Consensus 33 ~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~ 109 (243)
T COG2227 33 EFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NID 109 (243)
T ss_pred ceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--ccc
Confidence 334445544 4666555444445899999999999999999999995 999999999999999999887743 455
Q ss_pred EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhh
Q 025059 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164 (258)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+.+..+.+... ..++||+|+|..++.+ .++...++.++.+++||||.+++++++.......+--....
T Consensus 110 y~~~~~edl~~------~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae-- 177 (243)
T COG2227 110 YRQATVEDLAS------AGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAE-- 177 (243)
T ss_pred chhhhHHHHHh------cCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHH--
Confidence 66665533221 3489999999997766 56677899999999999999999999964433222111000
Q ss_pred cCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCCh
Q 025059 165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (258)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f 240 (258)
|....-...++...-++.++++.+.+...|+++.....+
T Consensus 178 -------------------------------------~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 178 -------------------------------------YVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred -------------------------------------HHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 000000011223344788999999999999999877654
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=1.1e-18 Score=129.54 Aligned_cols=109 Identities=27% Similarity=0.337 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC-CCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~fD~ 108 (258)
|+.+|||||||+|..+..+++. +..+++|+|+|+.+++.|+++........++.++++|+ .... ..+.||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence 6789999999999999999883 55699999999999999999996555556899999998 2222 2467999
Q ss_pred EEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 109 V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|++.. .++.++. .+....+++++.+.|+|||+++++.+
T Consensus 74 v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 74 VICSGFTLHFLLP-LDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEECSGSGGGCCH-HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEECCCccccccc-hhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99998 5664333 37789999999999999999998753
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=5.5e-18 Score=144.48 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=90.1
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... .++.+.++|+...++ ++++||+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~ 120 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM 120 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence 4688999999999999888886654459999999999999999887542 278999999877665 5789999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|++..++++ .+.++...+++++.++|+|||.++++.+
T Consensus 121 V~s~~~l~h--~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 121 IYSRDAILH--LSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEhhhHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999877665 2445788999999999999999999854
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.78 E-value=3e-17 Score=144.88 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.++.+|||||||+|..+..++.....+++|+|+|+.|++.|+++....+...++.++++|+.+.++ ++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence 467899999999999999888764459999999999999999988766554478999999987776 67899999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
++..+++++ .+...+++++.++|||||.++++...
T Consensus 191 ~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999988763 34678999999999999999987543
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=8.6e-18 Score=142.79 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=95.0
Q ss_pred HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (258)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (258)
+++....++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++....+...++.++++|+.+... ..+
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~~~ 110 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----HLE 110 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----hcC
Confidence 4444445678999999999999999988765 8999999999999999998776544478899999755321 146
Q ss_pred CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~ 151 (258)
++||+|++..+++++ ++...++.++.++|+|||.+++...+...
T Consensus 111 ~~fD~V~~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 111 TPVDLILFHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred CCCCEEEehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence 799999999988873 34568999999999999999998777654
No 13
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=2.6e-17 Score=139.03 Aligned_cols=161 Identities=20% Similarity=0.247 Sum_probs=127.5
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.+.||.+|||||||.|+++..++.....+|+|+++|+++.+.+++++...+...++++...|..+ ..+.||
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd---------~~e~fD 139 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD---------FEEPFD 139 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc---------cccccc
Confidence 35699999999999999999998886559999999999999999999988776678888888754 245699
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT 187 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~ 187 (258)
.|++..++.+ .+.+....+++.+.++|+|||.+++.+.....-. +
T Consensus 140 rIvSvgmfEh--vg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~------------------------------~--- 184 (283)
T COG2230 140 RIVSVGMFEH--VGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE------------------------------F--- 184 (283)
T ss_pred eeeehhhHHH--hCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc------------------------------c---
Confidence 9999998877 4567799999999999999999988744331100 0
Q ss_pred ecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059 188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245 (258)
Q Consensus 188 f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~ 245 (258)
...+.|-.+|.| +..++++...+.+.++++||.+....+|-..|.
T Consensus 185 -----~~~~~~i~~yiF--------PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa 229 (283)
T COG2230 185 -----RRFPDFIDKYIF--------PGGELPSISEILELASEAGFVVLDVESLRPHYA 229 (283)
T ss_pred -----ccchHHHHHhCC--------CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHH
Confidence 011234445655 234678889999999999999999888877665
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.76 E-value=5.5e-18 Score=121.40 Aligned_cols=95 Identities=26% Similarity=0.339 Sum_probs=82.3
Q ss_pred EEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecccc
Q 025059 36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL 115 (258)
Q Consensus 36 LDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l 115 (258)
||+|||+|..+..++..+..+++|+|+++.+++.++++.... ...+.++|+.+.++ ++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~------~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPF------PDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcc------ccccccccccccce
Confidence 899999999999998885669999999999999999988765 55699999988887 78999999999999
Q ss_pred ccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 116 QMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 116 ~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
++. ++...+++++.|+|||||++++
T Consensus 71 ~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 983 7789999999999999999985
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.75 E-value=5.9e-18 Score=141.63 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 95 (258)
.|....+-....+++.+|||+|||+|..+..++.. + ..+++|+|+|+.+++.|+++...... .++.++++|+...++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC
Confidence 44433332223447889999999999999888775 2 35899999999999999998876543 268999999876554
Q ss_pred hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
++++||+|++.+++++ .++...+++++.++|+|||.+++..+.
T Consensus 111 ------~~~~fD~V~~~~~l~~----~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 111 ------DDNSFDYVTIGFGLRN----VPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred ------CCCCccEEEEeccccc----CCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 5689999999988876 234568999999999999999887443
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.74 E-value=7.8e-18 Score=140.42 Aligned_cols=159 Identities=11% Similarity=0.070 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||+|||||..+..+......+++|+|+|++|++.|+++. .++++|+.+.++ ++++||+
T Consensus 49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~------~d~sfD~ 113 (226)
T PRK05785 49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF------RDKSFDV 113 (226)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC------CCCCEEE
Confidence 3467899999999999988887763348999999999999997641 357888877776 6899999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCc-EEEEEEcCch---HHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSS---TIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY 184 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 184 (258)
|++.+++|+ ..+...+++++.++|||.+ ++-+..|+.. .+...|.+.+.|.+.. .++..
T Consensus 114 v~~~~~l~~----~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~-------~~~~~------ 176 (226)
T PRK05785 114 VMSSFALHA----SDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIAC-------LAGAK------ 176 (226)
T ss_pred EEecChhhc----cCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHH-------HhcCC------
Confidence 999999986 3457889999999999953 3333345443 3334444444443221 11110
Q ss_pred EEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCC
Q 025059 185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239 (258)
Q Consensus 185 ~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~ 239 (258)
...|.| |.+|+.. +++++++.++++++| ..+....
T Consensus 177 --------------~~~Y~y-l~~si~~----f~~~~~~~~~~~~~~-~~~~~~~ 211 (226)
T PRK05785 177 --------------CRDYKY-IYYIYER----LPTNSFHREIFEKYA-DIKVYEE 211 (226)
T ss_pred --------------hHHHHH-HHHHHHH----CCCHHHHHHHHHHHh-CceEEEE
Confidence 012444 6666644 789999999999974 4454443
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.73 E-value=4.3e-17 Score=128.28 Aligned_cols=100 Identities=26% Similarity=0.418 Sum_probs=80.2
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||+|||+|.++..+...+. +++|+|+++.+++. . .......+...... ++++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~~~------~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R----NVVFDNFDAQDPPF------PDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T----TSEEEEEECHTHHC------HSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h----hhhhhhhhhhhhhc------cccchhh
Confidence 46789999999999999999977777 99999999999987 1 22333332222112 5789999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
|+|..+++++ ++...+++++.++|+|||++++++++..
T Consensus 82 i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 82 IICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 9999999983 3588999999999999999999998864
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.73 E-value=9.6e-18 Score=138.19 Aligned_cols=170 Identities=17% Similarity=0.233 Sum_probs=121.4
Q ss_pred HHHHHHHHHHh--cCCC------CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-----CCceeE
Q 025059 18 EFAKTALIKIY--SHPY------VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----KNFIAE 84 (258)
Q Consensus 18 ~~~k~~li~~~--~~~~------~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~ 84 (258)
-|+++-+.... +.|+ .+|||+|||+|-++..+++.+. +|+|+|+++.|++.|+++..... ..+++.
T Consensus 68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~ 146 (282)
T KOG1270|consen 68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE 146 (282)
T ss_pred hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence 45666555555 2344 7899999999999999999886 99999999999999999844332 123466
Q ss_pred EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhh
Q 025059 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164 (258)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+.+.|+.. ..+.||.|+|+.++++ ..++..++..+.++|+|||.+++++.+...+...
T Consensus 147 ~~~~~~E~---------~~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~--------- 204 (282)
T KOG1270|consen 147 YEDTDVEG---------LTGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTILSFA--------- 204 (282)
T ss_pred hhhcchhh---------cccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh---------
Confidence 67776643 2456999999998776 7779999999999999999999998886544321
Q ss_pred cCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCCh
Q 025059 165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (258)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f 240 (258)
++ |.+. .|.-.+..-+.+..|-+++|..+..++++.|+++.....+
T Consensus 205 -----------~~--------i~~~-----------E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 205 -----------GT--------IFLA-----------EIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGE 250 (282)
T ss_pred -----------cc--------ccHH-----------HHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhcc
Confidence 11 0000 0000001112344566899999999999999887766554
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=9.4e-17 Score=135.79 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=92.3
Q ss_pred HHHHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (258)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (258)
++....+++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+...++.++++|+.+.++
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----- 123 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----- 123 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence 44555678899999999999988887662 3459999999999999999999765544478999999866443
Q ss_pred hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
..+|+|++.+++|+ .+......+++++.++|+|||.++++
T Consensus 124 ---~~~D~vv~~~~l~~--l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 ---ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ---CCCCEEehhhHHHh--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 45899999999987 34566789999999999999999987
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.72 E-value=7.3e-17 Score=137.76 Aligned_cols=166 Identities=21% Similarity=0.221 Sum_probs=111.5
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
-++||.+|||||||.|+.+..++.....+|+|+.+|++..+.++++....++..++++...|..+ + +.+||
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD 129 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFD 129 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-S
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCC
Confidence 45699999999999999999998883349999999999999999999988776678999998643 2 34999
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT 187 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~ 187 (258)
.|++..++.++ ..+....+++.+.++|+|||.+++.......-..... ..
T Consensus 130 ~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~--------~~-------------------- 179 (273)
T PF02353_consen 130 RIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE--------RR-------------------- 179 (273)
T ss_dssp EEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC--------TT--------------------
T ss_pred EEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh--------cC--------------------
Confidence 99999877652 3477899999999999999999977444322111000 00
Q ss_pred ecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHh
Q 025059 188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246 (258)
Q Consensus 188 f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~ 246 (258)
....|-.+|.| +..++++..++...+++.||++....++...|..
T Consensus 180 ------~~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~ 224 (273)
T PF02353_consen 180 ------SSSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYAR 224 (273)
T ss_dssp ------CCCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHH
T ss_pred ------CCceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHH
Confidence 00011122322 2235778899999999999999999888877753
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=1.5e-16 Score=124.69 Aligned_cols=109 Identities=23% Similarity=0.321 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCccHHHHHH-c-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
+++.+|||+|||+|..+..++. . +..+++|+|+|+.|++.|+++.+..+.. +++|+++|+.+.+- .+ + ++||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~--~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL--E-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS--S-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc--C-CCee
Confidence 3578999999999999999984 3 3469999999999999999998877655 79999999977431 01 2 7999
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+|++..++++ ..+...+++++.++|++||.+++..+.
T Consensus 76 ~I~~~~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHH----FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhh----ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999988876 345678999999999999999999777
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=2.5e-16 Score=137.78 Aligned_cols=105 Identities=19% Similarity=0.107 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||||||+|.++..++..+...|+|+|+|+.++..++......+...++.+..+|+.+.++ .++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence 67899999999999999998887778999999999998654432221112268899999866543 57899999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|..++++ ..+...+++++.++|+|||.+++.+
T Consensus 195 s~~vl~H----~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYH----RRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhc----cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998886 3456789999999999999999874
No 23
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.69 E-value=2.6e-16 Score=122.86 Aligned_cols=141 Identities=20% Similarity=0.207 Sum_probs=102.1
Q ss_pred chHHhHHHHHHHHHHHHhcCCCC-EEEEEcCCCCccHHHHHHcCCC-eEEEEecChhHHHHHHHHHHhcCCCceeEEEEc
Q 025059 11 LTHHRLYEFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (258)
Q Consensus 11 ~~~~~~~~~~k~~li~~~~~~~~-~VLDlGcG~G~~~~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 88 (258)
...-|+-.|.+......-+.+.+ +|||||||+|.++..++..++. .++|+|.|+.+++.|+...+..+....+.|.++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 44556677876554311133344 9999999999999999998764 599999999999999998887765545999999
Q ss_pred CCCCCchhhhhhhcCCceeEEEeccccccc----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc--hHHHHHHH
Q 025059 89 DPCAENFETQMQEKANQADLVCCFQHLQMC----FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (258)
Q Consensus 89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (258)
|+.+..+ ..++||+|.--..+..+ -.....+...+..+.++|+|||+|+|+.+|. +++.+.+.
T Consensus 126 DI~~~~~------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 126 DITDPDF------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred eccCCcc------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence 9988655 45677777543322111 0112334678899999999999999998876 45555443
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.69 E-value=7.2e-16 Score=129.75 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=93.6
Q ss_pred HHHHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (258)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (258)
+......++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|++++.......++.++++|+.+.++
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----- 120 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----- 120 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence 44455668889999999999998888764 3458999999999999999998765444478999999876543
Q ss_pred hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
..+|+|++.+++|+ .+.++...+++++.++|+|||.+++..+
T Consensus 121 ---~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 ---KNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ---CCCCEEeeecchhh--CCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 35899999999997 3456788999999999999999999843
No 25
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.69 E-value=5.7e-16 Score=123.33 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=118.9
Q ss_pred HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (258)
Q Consensus 23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 102 (258)
.+|....+|+.+|||||||.|.++..+.........|+|++++.+..+.++ .+..+++|+.+. + ..+ +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~g-L-~~f--~ 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEG-L-ADF--P 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHh-H-hhC--C
Confidence 456778889999999999999999998887666999999999999988766 567899998552 1 112 6
Q ss_pred CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCe
Q 025059 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE 182 (258)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 182 (258)
+++||.|+++.++.. ....+.++.++.| -|...|+++||......++.= .-+|. ++ .
T Consensus 73 d~sFD~VIlsqtLQ~----~~~P~~vL~EmlR---Vgr~~IVsFPNFg~W~~R~~l-----~~~Gr-mP-----v----- 129 (193)
T PF07021_consen 73 DQSFDYVILSQTLQA----VRRPDEVLEEMLR---VGRRAIVSFPNFGHWRNRLQL-----LLRGR-MP-----V----- 129 (193)
T ss_pred CCCccEEehHhHHHh----HhHHHHHHHHHHH---hcCeEEEEecChHHHHHHHHH-----HhcCC-CC-----C-----
Confidence 899999999997765 5567777777754 477899999998655444331 11111 00 0
Q ss_pred eEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059 183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (258)
Q Consensus 183 ~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~ 241 (258)
.+..| |.|+- . +.-.+.+...|+++|++.|+++++..-+.
T Consensus 130 ---------t~~lP-----y~WYd-T----PNih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 130 ---------TKALP-----YEWYD-T----PNIHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred ---------CCCCC-----CcccC-C----CCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 01112 55532 1 22348899999999999999999876554
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.69 E-value=3.9e-16 Score=135.48 Aligned_cols=106 Identities=15% Similarity=0.019 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|.++..++..+...++|+|+|+.|+.+++..-.......++.+..+++.+.+. ..+||+|+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEEE
Confidence 67899999999999988888777768999999999998654322111111267788888755442 35899999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|..++++ ..+...++++++++|+|||.+++.+.
T Consensus 194 s~gvL~H----~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 194 SMGVLYH----RKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred Ecchhhc----cCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9998877 34567899999999999999998743
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=4.4e-16 Score=129.65 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=113.7
Q ss_pred CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.+...|+...++ .++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeeh
Confidence 379999999999998887763 358999999999999999998876655578999999865543 458999999
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEeccc
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~ 191 (258)
..++++. .+...+++++.++|+|||.+++..+..... ..
T Consensus 74 ~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------------------~~-------------- 112 (224)
T smart00828 74 FEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLL-----------------------SA-------------- 112 (224)
T ss_pred HHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccC-----------------------cc--------------
Confidence 8888763 346799999999999999999874421100 00
Q ss_pred CCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHh
Q 025059 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246 (258)
Q Consensus 192 ~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~ 246 (258)
.+ ......|+.+.+.+.++++++||++++..++..-|..
T Consensus 113 ------~~----------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 151 (224)
T smart00828 113 ------IE----------HEETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN 151 (224)
T ss_pred ------cc----------ccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence 00 0001124677888999999999999988887766543
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.69 E-value=3.4e-16 Score=127.95 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=87.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+.. ++.+.++|+.+.++ +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~-------~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTF-------DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCc-------CCCcCEEE
Confidence 568999999999999999988765 9999999999999999888765432 47888888865443 46799999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..++|+ .+.+....+++++.++|+|||++++.
T Consensus 101 ~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 101 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred Eecchhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9998886 45677899999999999999997654
No 29
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=6.1e-16 Score=131.44 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|||||||+|..+..++... ..+++|+|+|+.|++.|+++ ++.+.++|+.+.. +.++||+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-------~~~~fD~ 92 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-------PKPDTDV 92 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-------CCCCceE
Confidence 477899999999999998887763 35899999999999999753 4678899975432 3578999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|++..++|++ .+...+++++.++|+|||.++++.+.
T Consensus 93 v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 93 VVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred EEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999973 24678999999999999999998664
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.68 E-value=2e-16 Score=115.37 Aligned_cols=96 Identities=27% Similarity=0.472 Sum_probs=78.9
Q ss_pred EEEEcCCCCccHHHHHHcC----CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 35 VLDlGcG~G~~~~~~~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
|||+|||+|..+..+.... ..+++|+|+|++|++.++++....+. +++++++|+.+.+. ..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence 7999999999999998762 25999999999999999999876543 78999999977543 578999999
Q ss_pred eccc-cccccCCHHHHHHHHHHHHhcccCCc
Q 025059 111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG 140 (258)
Q Consensus 111 ~~~~-l~~~~~~~~~~~~~l~~i~~~LkpgG 140 (258)
+... +++ .+.++...+++++.++|+|||
T Consensus 73 ~~~~~~~~--~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHH--LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCC--CCHHHHHHHHHHHHHHhCCCC
Confidence 9655 777 568889999999999999998
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=1.9e-15 Score=139.34 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++..... .++.|.++|+...++ ++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~v~~~~~d~~~~~~------~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CSVEFEVADCTKKTY------PDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--CceEEEEcCcccCCC------CCCCEEEE
Confidence 4678999999999998888877644589999999999999988765432 368999999877665 56799999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+|..++++. .+...+++++.++|+|||.++++.+
T Consensus 337 ~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 337 YSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999888763 3467899999999999999998854
No 32
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.66 E-value=8.1e-15 Score=131.11 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=113.6
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.+++.+|||||||+|..+..++.....+++|+|+|+++++.|+++.... .+.+...|... + +++||.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~--l-------~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD--L-------NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh--c-------CCCCCE
Confidence 4688999999999999998887764459999999999999999988532 57788887633 1 468999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEe
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f 188 (258)
|++..++++ .+......+++++.++|+|||.+++.........
T Consensus 232 Ivs~~~~eh--vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~----------------------------------- 274 (383)
T PRK11705 232 IVSVGMFEH--VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD----------------------------------- 274 (383)
T ss_pred EEEeCchhh--CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-----------------------------------
Confidence 999887776 2456678999999999999999998754321100
Q ss_pred cccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHh
Q 025059 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246 (258)
Q Consensus 189 ~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~ 246 (258)
.....|-.+|.| +..++.+.+.+.+.++ .||++.+..+|...|..
T Consensus 275 ----~~~~~~i~~yif--------p~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 275 ----TNVDPWINKYIF--------PNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR 319 (383)
T ss_pred ----CCCCCCceeeec--------CCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence 000112223433 1134677888888665 69999998888888753
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.66 E-value=1.7e-15 Score=123.61 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+. ++.+...|+...++ +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence 457999999999999999988765 899999999999999988766543 46777777654333 35799999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..++|+ .+.+....+++++.++|+|||++++.
T Consensus 100 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 100 STVVFMF--LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred Eeccccc--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9988876 34567889999999999999996554
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.65 E-value=1.1e-15 Score=129.41 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|..+..+...+ .+++|+|+|+.|++.|+++.. ...++++|+...++ ++++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPL------ATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcC------CCCcEEEEE
Confidence 46789999999999888887655 499999999999999988753 24678899877665 567999999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
+..++++ ..+...++.++.++|+|||.++++++...
T Consensus 109 s~~~l~~----~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 109 SNLAVQW----CGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ECchhhh----cCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 9998886 33477899999999999999999977653
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.65 E-value=1.1e-14 Score=120.88 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|.++..++..+. +++|+|+|+.|++.|+++........++.+.++|+.+. .++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence 578999999999999999987654 89999999999999999987654333688999997542 26899999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
+...+++ .+.+....++.++.+++++++++.+
T Consensus 125 ~~~~l~~--~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIH--YPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHh--CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9888765 2456688899999999987665544
No 36
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=9.5e-16 Score=134.16 Aligned_cols=104 Identities=18% Similarity=0.161 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|||||||+|..+..++.. +..+++++|+|+.|++.|+++.... ++.++++|+.+.++ ++++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence 36789999999999988877665 3458999999999999999876533 57889999877665 5679999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|++..++++. .+...+++++.++|+|||.+++..+
T Consensus 182 VIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 182 YVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred EEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999888862 2345789999999999999987643
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=4.3e-15 Score=120.09 Aligned_cols=129 Identities=17% Similarity=0.094 Sum_probs=98.6
Q ss_pred CCCCCcchHHhHH-HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCce
Q 025059 5 PIPRSELTHHRLY-EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFI 82 (258)
Q Consensus 5 ~~~~~~~~~~~~~-~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 82 (258)
..++.++...... .++.+..+..+++++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.+..+.. +
T Consensus 18 ~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~ 96 (187)
T PRK00107 18 NLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-N 96 (187)
T ss_pred cccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-C
Confidence 3344444444433 44466666777888899999999999988888764 4469999999999999999998887654 4
Q ss_pred eEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+.+.++|+.+.. ..++||+|++... .....+++.+.++|+|||.+++..+..
T Consensus 97 i~~~~~d~~~~~-------~~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 97 VTVVHGRAEEFG-------QEEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred EEEEeccHhhCC-------CCCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 899999986533 2468999998641 236789999999999999999885553
No 38
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.65 E-value=2.3e-14 Score=124.58 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhhcCCce
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQA 106 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~f 106 (258)
+++.+|||+|||+|..+..++... ..+|+++|+|++|++.|++++.......++.++++|+.+. ++.... .....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCe
Confidence 567899999999999999888774 3589999999999999999887643334678899998652 221000 00122
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.++++...+++ .+.++...++++++++|+|||.|++.
T Consensus 140 ~~~~~gs~~~~--~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 140 LGFFPGSTIGN--FTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEEecccccC--CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 23333344554 34778899999999999999999876
No 39
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.63 E-value=2.7e-15 Score=120.79 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.++||||||.|+++..++..|. .|+++|+|+.+++.+++..+..+. .+...+.|+.+..+ ++.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~-------~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDF-------PEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccc-------cCCcCEEE
Confidence 567999999999999999999999 899999999999999887766644 68889999877554 46899999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..++++ ...+....++.+|.+.++|||++++.
T Consensus 100 st~v~~f--L~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMF--LQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGG--S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecc--CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 8777776 45677899999999999999998875
No 40
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=2.4e-15 Score=127.98 Aligned_cols=104 Identities=29% Similarity=0.346 Sum_probs=85.9
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
..++.+|||||||+|.++..++.. +..+++|+|+|+.|++.|+++.. ++.+..+|+.... +.++||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------DCQFVEADIASWQ-------PPQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------CCeEEECchhccC-------CCCCcc
Confidence 347789999999999999888776 34699999999999999988753 5678889975432 346899
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+|++..++|++ .+...+++++.++|+|||.+++++++.
T Consensus 96 ~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 96 LIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 99999999873 235789999999999999999987654
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=5.8e-15 Score=127.52 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++....+. ++.+...|+....+ +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence 345999999999999999988765 999999999999999998877654 67888888755433 57899999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+..++|+ .+.+....+++++.++|+|||++++..
T Consensus 190 ~~~vl~~--l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMF--LNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred Ecchhhh--CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998886 356778899999999999999977653
No 42
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.61 E-value=1.5e-14 Score=119.96 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+|||+|||+|..+..++.... .+++++|+++.+++.++++... ..++.+..+|+.+.++ ..++||
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~------~~~~~D 108 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL---PLNIEFIQADAEALPF------EDNSFD 108 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc---CCCceEEecchhcCCC------CCCcEE
Confidence 3788999999999999998887754 4899999999999999988751 2268899999876554 457899
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+|++.+++|+ ..+...+++++.+.|+|||.+++..
T Consensus 109 ~i~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 109 AVTIAFGLRN----VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEEeeeeCC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999888776 3457789999999999999998864
No 43
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.61 E-value=4.3e-15 Score=118.56 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
.-.++||+|||.|.++..++.... +++++|+|+.+++.|++|..... ++.+.++|+.... ++++||+|+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~~~-------P~~~FDLIV 111 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLP---HVEWIQADVPEFW-------PEGRFDLIV 111 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT----------SS-EEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCCCC-------CCCCeeEEE
Confidence 347899999999999999988764 89999999999999999998754 7999999986532 579999999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+..+++| +.+.+++..++..+...|+|||.+++-...
T Consensus 112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9998887 555788999999999999999999987543
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.61 E-value=1.8e-14 Score=120.64 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.++.+|||||||+|..+..+...+. +++++|+++.+++.|+++...... .+.+...|+...+. ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEE
Confidence 3678999999999999888877654 899999999999999988765433 56777777643221 135799999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
++...+++ ..+...+++++.+.|+|||.++++.++.
T Consensus 119 i~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 119 TCMEMLEH----VPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred EEhhHhhc----cCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 99887765 3346788999999999999999987764
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.61 E-value=2.5e-14 Score=115.29 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=90.3
Q ss_pred CCCcchHHhHHHHHHHH-HHHHhcCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeE
Q 025059 7 PRSELTHHRLYEFAKTA-LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAE 84 (258)
Q Consensus 7 ~~~~~~~~~~~~~~k~~-li~~~~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 84 (258)
.|..+|.....+.+... .....+ ++.+|||+|||+|..+..++... ..+++|+|+|+.|++.++++.+..+.. ++.
T Consensus 18 ~~~~~~~~~~~~~~~d~i~~~~~~-~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~ 95 (181)
T TIGR00138 18 TSLKTPEEIWERHILDSLKLLEYL-DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVE 95 (181)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeE
Confidence 45555555444333322 222333 47899999999999888876553 458999999999999999888766543 589
Q ss_pred EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
++++|+.+.. ..++||+|++.. +++ ...+++.+.++|+|||.+++...
T Consensus 96 ~i~~d~~~~~-------~~~~fD~I~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 96 IVNGRAEDFQ-------HEEQFDVITSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred EEecchhhcc-------ccCCccEEEehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 9999986532 357899998865 332 55678889999999999998743
No 46
>PRK06202 hypothetical protein; Provisional
Probab=99.61 E-value=1.8e-14 Score=120.75 Aligned_cols=103 Identities=18% Similarity=0.122 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCccHHHHHHc----C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (258)
++.+|||+|||+|..+..++.. + ..+++|+|+|+.|++.|+++.... ++.+.+.+....+. .+++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~------~~~~ 129 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVA------EGER 129 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccc------cCCC
Confidence 5679999999999988777542 2 248999999999999998876543 35565665544333 4679
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
||+|++++++|+. +.+....+++++.++++ |.+++...
T Consensus 130 fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 130 FDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 9999999999983 34557789999999998 44444433
No 47
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.61 E-value=1.4e-14 Score=118.98 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=82.1
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.+++.+|||+|||+|..+..+... +..+++|+|+|+.|++.|+++.+ ++.+.++|+.+ ++ ++++||
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~------~~~sfD 107 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PF------KDNFFD 107 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CC------CCCCEE
Confidence 456789999999999999988776 45699999999999999987653 45678888766 44 578999
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|++..++++. +.+.+..+++++.+++ ++.+++.
T Consensus 108 ~V~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 108 LVLTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred EEEECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEE
Confidence 99999999873 5678899999999998 4566665
No 48
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.60 E-value=2.9e-14 Score=118.64 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=91.2
Q ss_pred HHHHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059 18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 18 ~~~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (258)
.|++..+...- ..++.+|||+|||+|..+..++..+. .++++|+++.+++.+++++...+.. ++.+.+.|+.+.+..
T Consensus 31 ~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 108 (224)
T TIGR01983 31 DYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK 108 (224)
T ss_pred HHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC
Confidence 55555543220 12478999999999998888877655 7999999999999999988765321 477888886443221
Q ss_pred hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
..++||+|++...+++ ..+...+++++.++|+|||.+++..++..
T Consensus 109 -----~~~~~D~i~~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 109 -----GAKSFDVVTCMEVLEH----VPDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred -----CCCCccEEEehhHHHh----CCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 2378999999887776 34467899999999999999998876643
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.60 E-value=4.5e-16 Score=113.00 Aligned_cols=98 Identities=27% Similarity=0.311 Sum_probs=63.0
Q ss_pred EEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccc
Q 025059 36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH 114 (258)
Q Consensus 36 LDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~ 114 (258)
||+|||+|.++..+... +..+++|+|+|+.|++.|++++...... .......+..+... .. ..++||+|++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFD--YD--PPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS-----CC--C----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhh--cc--cccccceehhhhh
Confidence 79999999999999887 4459999999999999999888775421 22333333222111 00 2359999999999
Q ss_pred cccccCCHHHHHHHHHHHHhcccCCcEE
Q 025059 115 LQMCFETEERARRLLQNVSSLLKPGGYF 142 (258)
Q Consensus 115 l~~~~~~~~~~~~~l~~i~~~LkpgG~~ 142 (258)
+|++ ++...+++++.++|+|||+|
T Consensus 76 l~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 9984 67889999999999999986
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.59 E-value=2e-13 Score=118.81 Aligned_cols=105 Identities=20% Similarity=0.286 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC----CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
++.+|||+|||+|.++..++..+. +++|+|+|+.|++.|+++.+... ...++.|.+.|+.. .+++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---------l~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---------LSGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---------cCCCc
Confidence 578999999999999999988765 89999999999999999886531 11256888888632 24789
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|+|+|..++++ ...+....++..+.+ +.+||.++...|.
T Consensus 214 D~Vv~~~vL~H--~p~~~~~~ll~~l~~-l~~g~liIs~~p~ 252 (315)
T PLN02585 214 DTVTCLDVLIH--YPQDKADGMIAHLAS-LAEKRLIISFAPK 252 (315)
T ss_pred CEEEEcCEEEe--cCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence 99999998865 234455677777775 4566665543343
No 51
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.59 E-value=1e-14 Score=116.25 Aligned_cols=104 Identities=23% Similarity=0.262 Sum_probs=87.4
Q ss_pred CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeE-EEEcCCCCCc-hhhhhhhcCCceeEEE
Q 025059 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC 110 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~~~~~~fD~V~ 110 (258)
..|||+|||||.+...+-..+...|+++|+++.|-+.|.+++...... ++. |+.++..+.+ + +++++|+|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l------~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQL------ADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCccc------ccCCeeeEE
Confidence 457999999999877775556679999999999999999988776443 555 9999987766 3 689999999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|.+++- +.++..+.|.++.++|||||.+++.-.
T Consensus 151 ~TlvLC----Sve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 151 CTLVLC----SVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEe----ccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999654 577899999999999999999999843
No 52
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.58 E-value=1.8e-14 Score=122.79 Aligned_cols=122 Identities=23% Similarity=0.244 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHh-cCCCCEEEEEcCCCCcc----HHHHHHcC------CCeEEEEecChhHHHHHHHHHHh------c-
Q 025059 16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVD----VDKWETAL------IANYIGIDVATSGIGEARDTWEN------Q- 77 (258)
Q Consensus 16 ~~~~~k~~li~~~-~~~~~~VLDlGcG~G~~----~~~~~~~~------~~~v~gvD~s~~~l~~a~~~~~~------~- 77 (258)
+.+.+...++... ..++.+|||+|||+|.. +..+.... ..+++|+|+|+.||+.|++..-. .
T Consensus 83 l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~ 162 (264)
T smart00138 83 LEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLP 162 (264)
T ss_pred HHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCC
Confidence 4455444444332 22457999999999973 33333321 24899999999999999885310 0
Q ss_pred -------------------CCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC
Q 025059 78 -------------------RKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138 (258)
Q Consensus 78 -------------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 138 (258)
....++.|.++|+.+.++ +.++||+|+|..+++| -+.+....++++++++|+|
T Consensus 163 ~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y--f~~~~~~~~l~~l~~~L~p 234 (264)
T smart00138 163 KALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY--FDEPTQRKLLNRFAEALKP 234 (264)
T ss_pred HHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh--CCHHHHHHHHHHHHHHhCC
Confidence 001257899999977654 4689999999999987 3567788999999999999
Q ss_pred CcEEEEE
Q 025059 139 GGYFLGI 145 (258)
Q Consensus 139 gG~~i~~ 145 (258)
||++++.
T Consensus 235 GG~L~lg 241 (264)
T smart00138 235 GGYLFLG 241 (264)
T ss_pred CeEEEEE
Confidence 9999885
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.58 E-value=3.3e-13 Score=112.66 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.++.+|||+|||+|..+..++..+. .++|+|+|+.|++.|+++....+...++.+..+|+.. .+++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence 4678999999999999999887765 7999999999999999988765433368888888421 35789999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG 140 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG 140 (258)
++..++++ ...+....+++++.+.+++++
T Consensus 132 ~~~~~l~~--~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 132 VCLDVLIH--YPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred EEcchhhc--CCHHHHHHHHHHHHhhcCCeE
Confidence 99988865 246678889999998775444
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.57 E-value=2.5e-14 Score=117.33 Aligned_cols=122 Identities=17% Similarity=0.091 Sum_probs=90.4
Q ss_pred HhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC-CCCchhhhhhhcCC
Q 025059 27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKAN 104 (258)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~ 104 (258)
.+..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .++.++++|+ ...+ ..+ +++
T Consensus 36 ~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~ 110 (202)
T PRK00121 36 LFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDG 110 (202)
T ss_pred HcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Ccc
Confidence 34446789999999999999988775 345899999999999999998876543 2689999997 3322 111 467
Q ss_pred ceeEEEeccccccccC-C---HHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059 105 QADLVCCFQHLQMCFE-T---EERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~-~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~ 153 (258)
+||+|++.+...+... + ......+++++.++|+|||.+++.+++.....
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~ 163 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE 163 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 8999998775432110 0 01246789999999999999999887765443
No 55
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.56 E-value=4.1e-14 Score=118.43 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=88.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++... ++.++.+|+.+.++ ++++||+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence 34789999999999998887764 34799999999999999887652 57889999877655 56789999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~ 151 (258)
++..++|+ ..+...++.++.++|+|||.+++..+....
T Consensus 103 i~~~~l~~----~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 103 VSNLALQW----CDDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred EEhhhhhh----ccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 99998887 344678999999999999999999776644
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=1.4e-13 Score=103.47 Aligned_cols=106 Identities=13% Similarity=0.028 Sum_probs=82.7
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
..++.+|||+|||+|..+..+++. +..+++++|+|+.+++.++++....+.. ++.++..|+....- . ...+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~--~---~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE--D---SLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh--h---hcCCCC
Confidence 346789999999999999999886 3468999999999999999887765433 67888888653110 0 246899
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+|++....+ ....+++++.+.|+|||.++++..
T Consensus 91 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 998865332 356899999999999999998753
No 57
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.56 E-value=4.7e-14 Score=120.96 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC----CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+..+|||+|||+|..+..++... ...++|+|+|+.|++.|+++.. ++.+.++|+.+.++ ++++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence 55789999999999988887642 2379999999999999987642 57889999887776 57899
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~ 154 (258)
|+|++.++. ..+.++.++|+|||.+++..|....+..
T Consensus 153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e 189 (272)
T PRK11088 153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE 189 (272)
T ss_pred eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence 999986632 2357899999999999999988765543
No 58
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.56 E-value=1.7e-13 Score=109.44 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCC-eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||+|..+..++..... +++++|+++.+++.++++.+.++... +.+.+.|+.+.. ++++||+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-------~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-------PDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-------CTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-------cccceeEE
Confidence 6789999999999999988887654 79999999999999999998886543 899999985532 36899999
Q ss_pred EeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+++-.++.... .......++....++|+|||.+++.....
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 99877664221 22467899999999999999998775554
No 59
>PRK06922 hypothetical protein; Provisional
Probab=99.56 E-value=3.3e-14 Score=132.01 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=88.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc--hhhhhhhcCCcee
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~fD 107 (258)
++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+ .++.++++|+.+.+ + ++++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence 5789999999999988877764 44699999999999999998875443 26788899986644 3 567999
Q ss_pred EEEeccccccccC---------CHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 108 ~V~~~~~l~~~~~---------~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+|++...+|+.+. +.+....+++++.++|||||.+++..
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999988886432 24678999999999999999999973
No 60
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.55 E-value=3.7e-14 Score=121.60 Aligned_cols=107 Identities=23% Similarity=0.245 Sum_probs=86.4
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+.++.+|||+|||+|..+..++.. +. .+++|+|+++.|++.|+++....+.. ++.+.++|+...++ ++++|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~------~~~~f 147 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV------ADNSV 147 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC------CCCce
Confidence 347899999999999877666554 33 47999999999999999987765433 68899999876555 56799
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+|++..++|+ ..+...+++++.++|+|||.+++..
T Consensus 148 D~Vi~~~v~~~----~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 148 DVIISNCVINL----SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred eEEEEcCcccC----CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999988775 2345679999999999999999873
No 61
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.55 E-value=1.2e-13 Score=114.11 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-----------CCCceeEEEEcCCCCCchhhh
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ 98 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~~ 98 (258)
+++.+|||+|||.|.++..++.++. +|+|+|+|+.+++.+.+..... ....++++.++|+.+.+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA-- 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence 5678999999999999999999888 8999999999999864422100 0123689999999764421
Q ss_pred hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
..++||.|....++++ .+.+....+++.+.++|+|||.+++.
T Consensus 110 ---~~~~fD~i~D~~~~~~--l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 ---DLGPVDAVYDRAALIA--LPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ---cCCCcCEEEechhhcc--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1357999988776664 35777889999999999999986655
No 62
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.54 E-value=8.2e-14 Score=116.67 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+|||+|||+|..+..++... ..+++++|+++.+++.++++........++.+..+|+.+.++ ..++||
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D 123 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFD 123 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCcc
Confidence 367899999999999999888775 369999999999999999988654333368899999876554 457899
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+|++..++|+ ..+...+++++.++|+|||.+++..
T Consensus 124 ~I~~~~~l~~----~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 124 AVTIAFGLRN----VPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEEeccccc----CCCHHHHHHHHHHhccCCcEEEEEE
Confidence 9999888876 3347788999999999999998763
No 63
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.54 E-value=2.3e-13 Score=110.91 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=104.2
Q ss_pred HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC--chhhhhhhcC
Q 025059 26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA 103 (258)
Q Consensus 26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~ 103 (258)
...++++.+|||+|||+|.++..++......++|+|+|+++++.++++ ++.++++|+.+. ++ ++
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~------~~ 73 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF------PD 73 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc------CC
Confidence 344567889999999999998888665545789999999999988642 457888887541 12 46
Q ss_pred CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCee
Q 025059 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 183 (258)
++||+|++..++|++ .+...+++++.+++ |..++++|+......... ++.++. .+
T Consensus 74 ~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~-----~~~~~~------~~------- 128 (194)
T TIGR02081 74 KSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWS-----ILTKGR------MP------- 128 (194)
T ss_pred CCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHH-----HHhCCc------cc-------
Confidence 789999999988873 34666777777654 456677776533322111 011110 00
Q ss_pred EEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (258)
Q Consensus 184 ~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~ 241 (258)
+. ... .|.+ +.. ....+.+.+.+.++++++||++++...+.
T Consensus 129 ----~~---~~~-----~~~~-~~~----~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 129 ----VT---GEL-----PYDW-YNT----PNIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred ----cC---CCC-----Cccc-cCC----CCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 00 000 0112 111 11246799999999999999999877664
No 64
>PRK08317 hypothetical protein; Provisional
Probab=99.54 E-value=1.3e-13 Score=115.32 Aligned_cols=108 Identities=25% Similarity=0.338 Sum_probs=88.1
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++.... ..++.+..+|+...++ .+++|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence 4578899999999999998887753 468999999999999998884332 2268899999876555 46799
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|+|++..++++ ..+...+++++.++|+|||.+++..++
T Consensus 89 D~v~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRVLQH----LEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred eEEEEechhhc----cCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 99999987776 344678999999999999999988654
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=1.6e-13 Score=118.58 Aligned_cols=110 Identities=20% Similarity=0.164 Sum_probs=85.9
Q ss_pred HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
+..+..++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++...++...++.+...+.. .. ..+
T Consensus 153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~------~~~ 224 (288)
T TIGR00406 153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QP------IEG 224 (288)
T ss_pred HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cc------cCC
Confidence 3445567899999999999998888777777999999999999999999887655445566665531 11 356
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+||+|+++.. ...+..++.++.++|+|||.++++....
T Consensus 225 ~fDlVvan~~-------~~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 225 KADVIVANIL-------AEVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred CceEEEEecC-------HHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 8999998753 2346788999999999999999985543
No 66
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.52 E-value=1.7e-13 Score=111.77 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhcC---CCCEEEEEcCCCCccHHHHHHcCC---CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 17 YEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 17 ~~~~k~~li~~~~~---~~~~VLDlGcG~G~~~~~~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
++|+....-..+.. +..+|||+|||.|..+..+.+... -.++++|.|+.+++..+++...... ++.-.+.|+
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~--~~~afv~Dl 131 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES--RVEAFVWDL 131 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh--hhcccceec
Confidence 36765544332222 223799999999999999888633 2799999999999998887654322 556666777
Q ss_pred CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCC
Q 025059 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSM 170 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (258)
....+...+ ..+++|+|++.|++-. .+.+....+++++.++|||||.+++.......+.
T Consensus 132 t~~~~~~~~--~~~svD~it~IFvLSA--i~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla----------------- 190 (264)
T KOG2361|consen 132 TSPSLKEPP--EEGSVDIITLIFVLSA--IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA----------------- 190 (264)
T ss_pred cchhccCCC--CcCccceEEEEEEEec--cChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-----------------
Confidence 665532222 5789999999998875 5688899999999999999999998754443221
Q ss_pred CCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEE
Q 025059 171 KPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE 236 (258)
Q Consensus 171 ~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~ 236 (258)
+++|..+ ..+ .-+|+..++++ .-|+.+.+.|.+++.++||..++
T Consensus 191 --------------qlRF~~~----~~i--~~nfYVRgDGT--~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 191 --------------QLRFKKG----QCI--SENFYVRGDGT--RAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred --------------HHhccCC----cee--ecceEEccCCc--eeeeccHHHHHHHHHhcccchhc
Confidence 1122100 000 12233333332 34788999999999999998774
No 67
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.52 E-value=3.5e-13 Score=117.49 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|||||||+|..+..+++.. ..+++++|. +.+++.++++....+...+++++.+|+.+.++ + .+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~------~--~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY------P--EADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC------C--CCCE
Confidence 467899999999999999888874 358999997 78999999988877665579999999876443 2 3699
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|++...+|. .+.+....+++++.++|+|||.+++.
T Consensus 219 v~~~~~lh~--~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 219 VLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEeEhhhhc--CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998888886 34566789999999999999999887
No 68
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.51 E-value=5.5e-14 Score=104.95 Aligned_cols=113 Identities=22% Similarity=0.214 Sum_probs=86.9
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
|.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+.++...+...+++++++|+.... +.. ..++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence 568999999999999999888756999999999999999999988765557999999974422 111 5689999999
Q ss_pred ccccccccCCH----HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 112 FQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 112 ~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+-......... .....+++.+.++|+|||.+++.+|+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 76544321111 24578999999999999999998764
No 69
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.51 E-value=3.3e-14 Score=114.10 Aligned_cols=102 Identities=28% Similarity=0.294 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
+..+|.|||||+|..+..+.++ +...++|+|.|++|++.|+++.. ++.|..+|+.+-. +....|++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~-------p~~~~dll 96 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWK-------PEQPTDLL 96 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcC-------CCCccchh
Confidence 5689999999999998888887 56799999999999999998876 6789999986532 56789999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.++.++|++ ++-..++..+...|.|||.+.+..|+.
T Consensus 97 faNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 97 FANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999999994 445678888889999999999999987
No 70
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=8.9e-13 Score=117.10 Aligned_cols=119 Identities=16% Similarity=0.122 Sum_probs=89.3
Q ss_pred HHHHhcC--CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCC--ceeEEEEcCCCCCchhhh
Q 025059 24 LIKIYSH--PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQ 98 (258)
Q Consensus 24 li~~~~~--~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~ 98 (258)
++...++ .+.+|||+|||+|..+..++... ..+++++|+|+.|++.|+++++.+... .++.+...|+... +
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~--- 294 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V--- 294 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C---
Confidence 3344444 24689999999999998887764 459999999999999999988765421 2678888887432 1
Q ss_pred hhhcCCceeEEEecccccccc-CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 99 MQEKANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
...+||+|+|+-.+|... .+.....+++..+.++|+|||.+++.....
T Consensus 295 ---~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 295 ---EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 343 (378)
T ss_pred ---CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence 346899999987666421 233456789999999999999999885443
No 71
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.49 E-value=2.7e-14 Score=112.88 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=66.4
Q ss_pred EEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhc
Q 025059 58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135 (258)
Q Consensus 58 ~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~ 135 (258)
+|+|+|++|++.|+++.+... ...+++++++|+.+.++ ++++||+|++.+++|+. ++...++++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence 589999999999988765322 12268999999988776 67899999999999873 4578999999999
Q ss_pred ccCCcEEEEEEcC
Q 025059 136 LKPGGYFLGITPD 148 (258)
Q Consensus 136 LkpgG~~i~~~~~ 148 (258)
|||||.+++....
T Consensus 71 LkpGG~l~i~d~~ 83 (160)
T PLN02232 71 LKPGSRVSILDFN 83 (160)
T ss_pred cCcCeEEEEEECC
Confidence 9999999887443
No 72
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.49 E-value=4.9e-13 Score=113.48 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHH--HHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR--DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.|.+|||||||+|..+..++..+...|+|+|.+...+.+.+ +++.+.. ..+.+....+.+.+ ..+.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~--~~~~~lplgvE~Lp-------~~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD--PPVFELPLGVEDLP-------NLGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC--ccEEEcCcchhhcc-------ccCCcCE
Confidence 68999999999999999999999989999999988776632 3333221 12222223333322 2578999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|.|..++.| ..+.-..|.++++.|+|||.+++.+
T Consensus 186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 999998776 5667889999999999999999874
No 73
>PLN03075 nicotianamine synthase; Provisional
Probab=99.48 E-value=7.5e-13 Score=113.26 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCCCccHHHHHH--c-CCCeEEEEecChhHHHHHHHHHHh-cCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWET--A-LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~--~-~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
++.+|+|||||.|..+.-+.. . +.++++|+|+++++++.|++.+.. .+...++.|..+|+.+... ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence 678999999999866555443 2 446899999999999999998854 4444479999999866321 24689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|+|++. ++++ ...++...+++++.+.|+|||.+++-..
T Consensus 197 DlVF~~-ALi~--~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 197 DVVFLA-ALVG--MDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CEEEEe-cccc--cccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999999 8887 2346788999999999999999998864
No 74
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.48 E-value=6.5e-13 Score=110.05 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=84.0
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-----------CCCceeEEEEcCCCCCchhh
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET 97 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~ 97 (258)
.+++.+|||+|||.|.++..++..+. +|+|+|+|+.+++.+.+..... ....++++.++|+.+....
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~- 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA- 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc-
Confidence 35678999999999999999999888 8999999999999874321100 0123688999999765321
Q ss_pred hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
..+.||.|....+++. .+.+....++..+.++|+|||.+++.
T Consensus 113 ----~~~~fd~v~D~~~~~~--l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 ----DLADVDAVYDRAALIA--LPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred ----cCCCeeEEEehHhHhh--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1358999988777764 36788999999999999999975543
No 75
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=8.1e-13 Score=106.34 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|..+..++..+. +++++|+|+.+++.++++....+. ++.+.++|+.+. ..++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--------~~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKG--------VRGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccc--------cCCcccEEE
Confidence 457899999999999999888766 899999999999999998876543 678888997542 235899999
Q ss_pred eccccccccC-----------------CHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 111 ~~~~l~~~~~-----------------~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
++...+..-. .......++.++.++|+|||.+++..+.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 9865543211 1122577899999999999999887544
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=1.3e-12 Score=107.47 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=79.7
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+|||+|||+|..+..++... .++++++|+++.+++.|++++...+...++.++.+|+.+... ...+|
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~f 143 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPF 143 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCc
Confidence 3578899999999999887776642 358999999999999999988776543358899999865322 34689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+|++..+++. +..++.+.|+|||.+++..
T Consensus 144 D~Ii~~~~~~~----------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 144 DAIIVTAAAST----------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cEEEEccCcch----------hhHHHHHhcCcCcEEEEEE
Confidence 99998876543 2246788999999998864
No 77
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=2.7e-12 Score=103.98 Aligned_cols=103 Identities=11% Similarity=0.065 Sum_probs=81.4
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
..++.+|||+|||+|..+..+++.. ..+++++|+|+.+++.|+++....+.. ++.+.++|+.. .+ .++||
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~-------~~~~D 99 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL-------PGKAD 99 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-------CcCCC
Confidence 3478899999999999998887763 358999999999999999888765432 68888888631 22 35799
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+|++....++ +..++..+.++|+|||.+++..+
T Consensus 100 ~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 100 AIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 9998764432 46688999999999999988754
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=2.5e-12 Score=113.40 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
..+|||+|||+|.++..++... ..+++++|+|+.|++.|+++++.++. ...+...|+... ..++||+|+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlIv 266 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMII 266 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEEE
Confidence 4689999999999988887764 35899999999999999999887654 456777887431 247899999
Q ss_pred eccccccccCC-HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 111 CFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 111 ~~~~l~~~~~~-~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
|+..+|..... ......++.++.++|+|||.+++.....
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 99888864332 4567899999999999999999886554
No 79
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.45 E-value=6.8e-13 Score=108.21 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.+..+|||||||+|..+..++.. +...++|+|+++.+++.|+++....+.. ++.++++|+.... ... .+++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~-~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKF-FPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--Hhh-CCCCceeE
Confidence 35578999999999999888876 3458999999999999999988776554 7899999985421 111 03568999
Q ss_pred EEeccccccccCC----HHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 109 VCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 109 V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
|++.+.-.+.-.. .-....++++++++|+|||.+++.+.+..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 9988754431000 00125789999999999999998876654
No 80
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=7.3e-13 Score=122.25 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||||||+|.++..++... .+++|+|+|+.|++.+++..... .++.++++|+....+. + ++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~---~~i~~~~~d~~~~~~~--~--~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHY---KNVKFMCADVTSPDLN--I--SDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccC---CceEEEEecccccccC--C--CCCCEEEEe
Confidence 56799999999999999988764 48999999999999876543221 2688999998642210 1 567999999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+.++++++ +.+....+++++.++|+|||++++.
T Consensus 109 ~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99999873 4566889999999999999999886
No 81
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=6.6e-13 Score=113.32 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=83.4
Q ss_pred HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (258)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (258)
++.++..++.+|||+|||+|.++...++.+..+++|+|++|.+++.|+++...++....+.....+....+ ..
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-------~~ 227 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-------EN 227 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-------cc
Confidence 34555668999999999999999999999998999999999999999999988753211111112111111 34
Q ss_pred CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
++||+|+++- + .+-+..+...+.++|+|||+++++-
T Consensus 228 ~~~DvIVANI-L------A~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 228 GPFDVIVANI-L------AEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred CcccEEEehh-h------HHHHHHHHHHHHHHcCCCceEEEEe
Confidence 6999999876 2 3346789999999999999999984
No 82
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.44 E-value=6.2e-13 Score=114.34 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=83.4
Q ss_pred HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (258)
Q Consensus 23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 102 (258)
.++..+..++.+|||+|||+|.++...++.+..+++|+|+++.+++.|+++...++...++.+. .. ... .
T Consensus 153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~--~~~------~ 222 (295)
T PF06325_consen 153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS--EDL------V 222 (295)
T ss_dssp HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT--SCT------C
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee--ccc------c
Confidence 4456677889999999999999999999999989999999999999999999888765444432 11 112 3
Q ss_pred CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
..+||+|+++-. ..-+..++..+.++|+|||.++++
T Consensus 223 ~~~~dlvvANI~-------~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 223 EGKFDLVVANIL-------ADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CS-EEEEEEES--------HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cccCCEEEECCC-------HHHHHHHHHHHHHhhCCCCEEEEc
Confidence 589999998762 344778899999999999999998
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.44 E-value=1.1e-12 Score=111.15 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=76.8
Q ss_pred HhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
....++.+|||+|||+|.++..+...+..+++|+|+|+.+++.|+++...++....+.+..+ +.+|
T Consensus 115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~f 180 (250)
T PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKA 180 (250)
T ss_pred hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCc
Confidence 34567899999999999888877776766799999999999999999876643212222111 2279
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|+|+++.. ......++.++.++|+|||.++++...
T Consensus 181 D~Vvani~-------~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 181 DVIVANIL-------ANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred CEEEEcCc-------HHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 99988652 234678899999999999999998543
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.44 E-value=4.2e-12 Score=103.88 Aligned_cols=111 Identities=13% Similarity=0.055 Sum_probs=85.0
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+|||+|||+|.++..++.. +..+++++|+++.+++.|+++....+...++.++++|+.+. ++...+.|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-----l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-----LFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-----HhhcCCCC
Confidence 447899999999999998887664 33589999999999999999887765333688888887432 11124689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~ 151 (258)
|.|++... ......+++.+.++|+|||.+++..+....
T Consensus 113 D~V~~~~~-------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (198)
T PRK00377 113 DRIFIGGG-------SEKLKEIISASWEIIKKGGRIVIDAILLET 150 (198)
T ss_pred CEEEECCC-------cccHHHHHHHHHHHcCCCcEEEEEeecHHH
Confidence 99988542 234678899999999999999987665543
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.44 E-value=2.8e-12 Score=106.84 Aligned_cols=112 Identities=19% Similarity=0.140 Sum_probs=84.7
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||+|||+|..+..++..+..+++++|+|+.+++.++++....+. ++.++++|+... + +.++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence 457889999999999998888776656999999999999999988876543 678888887542 2 4578999
Q ss_pred EEecccccccc-----------------CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 109 VCCFQHLQMCF-----------------ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 109 V~~~~~l~~~~-----------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
|+++-..+... .....+..+++++.++|+|||.+++.....
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99874222100 112235678899999999999999864443
No 86
>PRK04266 fibrillarin; Provisional
Probab=99.43 E-value=2.9e-12 Score=106.67 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=80.0
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
+.++.+|||+|||+|..+..++.. +.+.|+|+|+++.|++.+.++..... ++.++.+|+........ -.++||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~---nv~~i~~D~~~~~~~~~---l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERK---NIIPILADARKPERYAH---VVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcC---CcEEEECCCCCcchhhh---ccccCC
Confidence 348899999999999999888776 33589999999999998877665432 67889999864211011 135699
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+|++... .......++.++.++|||||.++++.+.
T Consensus 144 ~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 144 VIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9975432 2333456789999999999999997553
No 87
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.42 E-value=3.4e-12 Score=105.20 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=81.6
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh--hhcCC
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--QEKAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~ 104 (258)
+.++.+|||||||+|.++..+++.. .+.|+|+|+++ |. . . .++.++++|+.+....+.+ +...+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~---~---~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----P---I---VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----C---C---CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 4688899999999999998887763 35899999988 21 1 1 1578999999875421111 01467
Q ss_pred ceeEEEeccccccccCCH-H------HHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059 105 QADLVCCFQHLQMCFETE-E------RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~-~------~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~ 156 (258)
+||+|++..+.++.-... + ....+++++.++|+|||.|++.+..+..+.+.+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l 175 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL 175 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence 899999987665421111 1 125789999999999999999877665444333
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=3.6e-12 Score=105.38 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+|||+|||+|..+..++.. + .++++++|+++++++.|++++...+.. ++.++++|+..... ..+.|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~------~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE------ENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC------cCCCc
Confidence 458899999999999988877765 2 359999999999999999998866532 68999999865432 35789
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+|++..+.+. +...+.+.|+|||.+++..
T Consensus 147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence 99988765432 2245677899999998864
No 89
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.41 E-value=4.1e-12 Score=105.26 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=79.5
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+|||||||+|..+..++... .++++++|+++.+++.|++++...+.. ++.++++|+..... ...+|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~------~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE------PLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc------ccCCC
Confidence 4578999999999999998887763 246999999999999999999876542 68999999865322 34689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+|++...... +...+.+.|+|||++++..
T Consensus 148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEE
Confidence 99988765433 3355788999999998864
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.41 E-value=3.3e-12 Score=112.46 Aligned_cols=119 Identities=17% Similarity=0.107 Sum_probs=91.7
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.+++.+|||+|||+|..+...+..+. .++|+|+++.|+..|+.+++..+.. ++.+.++|+.+.++ .+++||+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~------~~~~~D~ 251 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPL------SSESVDA 251 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCc------ccCCCCE
Confidence 45788999999999998887766554 8999999999999999988776543 37889999877665 4679999
Q ss_pred EEecccccc--cc---CCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059 109 VCCFQHLQM--CF---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK 155 (258)
Q Consensus 109 V~~~~~l~~--~~---~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~ 155 (258)
|++...... .. ........++.++.++|+|||.+++.+|+...+.+.
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 998632210 00 112346889999999999999999998887555443
No 91
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.39 E-value=1.8e-11 Score=105.46 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++++|+.+. + +.++||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence 45789999999999999988763 4599999999999999999988775544789999997532 2 34589999
Q ss_pred Eecccc-------------cc----c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHL-------------QM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l-------------~~----~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+++-.. ++ + -.+.+..+.++.++.++|+|||.+++.+...
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 986210 00 0 0112345788999999999999999987654
No 92
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=9.2e-12 Score=103.07 Aligned_cols=113 Identities=11% Similarity=-0.001 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh-----------cCCCceeEEEEcCCCCCchhhh
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-----------QRKNFIAEFFEADPCAENFETQ 98 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~~ 98 (258)
+++.+||..|||.|.++..++..|. .|+|+|+|+.+++.+.+.... ...+.++++.++|+.+.+...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 4678999999999999999999998 799999999999998663210 011337899999998754210
Q ss_pred hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
...+.||+|.-..+++. .+.+...+..+.+.++|+|||.+++.+.+
T Consensus 120 --~~~~~fD~VyDra~~~A--lpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 120 --NNLPVFDIWYDRGAYIA--LPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred --cccCCcCeeeeehhHhc--CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 02368999988877775 36788999999999999999999887543
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=99.36 E-value=2.1e-11 Score=98.40 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCce-eEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.++++....+...+ +.++++|+.+. + ...+||+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~d~ 93 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-F------RGDKFDV 93 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-c------cccCceE
Confidence 467899999999999999988874 5999999999999999988876543212 78888887542 2 3448999
Q ss_pred EEecccccc-----------------ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 109 VCCFQHLQM-----------------CFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 109 V~~~~~l~~-----------------~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
|+++..... ...+......+++++.++|+|||.+++..++.
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 987643211 01123446788999999999999998886653
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=2.9e-11 Score=105.23 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=84.0
Q ss_pred CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++++|+.+ .+ +.++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l------~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-AL------PGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hC------CCCCccEEEE
Confidence 689999999999998887763 458999999999999999998876554468999999743 12 3468999998
Q ss_pred cccc-------------cc----c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 112 FQHL-------------QM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 112 ~~~l-------------~~----~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+-.. ++ + -.+.+....++.++.++|+|||.+++.+...
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 6210 00 0 0112345788999999999999999986554
No 95
>PTZ00146 fibrillarin; Provisional
Probab=99.35 E-value=2e-11 Score=104.24 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=76.6
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+.|+.+|||+|||+|.++..++..- ...|+++|+|++|++...+...... ++.++..|+..... +....+++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~---NI~~I~~Da~~p~~---y~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRP---NIVPIIEDARYPQK---YRMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC---CCEEEECCccChhh---hhcccCCC
Confidence 4588999999999999999998872 4589999999986655444433221 67888999764211 11123579
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+|++..+ ...+...++.++.++|||||.|++.
T Consensus 204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99987653 1335667778899999999999985
No 96
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.34 E-value=1.3e-11 Score=109.40 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+..+||||||+|..+..++... ...++|+|+++.+++.|.++....++. ++.++++|+.... ..+ +++++|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll--~~~--~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLL--ELL--PSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhh--hhC--CCCceeEE
Confidence 35689999999999999998873 458999999999999999998776554 6899999975321 112 57899999
Q ss_pred EeccccccccCCHH----HHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 110 CCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 110 ~~~~~l~~~~~~~~----~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
.+.+...+ .... ....++..++++|+|||.+.+.+-+..
T Consensus 197 ~lnFPdPW--~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 197 FVHFPVPW--DKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EEeCCCCc--cccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 98875543 1111 126899999999999999988765553
No 97
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.33 E-value=2.8e-12 Score=104.76 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059 17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 17 ~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (258)
..|++... ...+....++|+|||+|..++-++.. +.+|+|+|+|+.||+.|++..+.............++ .++.
T Consensus 21 tdw~~~ia--~~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L~ 95 (261)
T KOG3010|consen 21 TDWFKKIA--SRTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDLL 95 (261)
T ss_pred HHHHHHHH--hhCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccc--cccc
Confidence 36666543 22222338999999999666666554 6699999999999999988765543322233333333 2221
Q ss_pred hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCc-EEEEEEcC-----ch---HHHHHHHHhHHhhhcCC
Q 025059 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPD-----SS---TIWAKYQKNVEAYHNRS 167 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~~~~-----~~---~~~~~~~~~~~~~~~~~ 167 (258)
..+++.|+|+|..++|+ |. +..+.+++.++||+.| .+.+-..+ .+ .++.++.....|+|-.
T Consensus 96 ----g~e~SVDlI~~Aqa~HW-Fd----le~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~~p~~r~- 165 (261)
T KOG3010|consen 96 ----GGEESVDLITAAQAVHW-FD----LERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDSTLPYWRS- 165 (261)
T ss_pred ----CCCcceeeehhhhhHHh-hc----hHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhccCchhhh-
Confidence 13789999999999997 44 7889999999999987 44444222 22 2333322222222100
Q ss_pred CCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCc--cCCCccccchHHHHHHHHHcCcEEEEe
Q 025059 168 SSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDI--SAETQCLVHFPSLIRLAREAGLEYVEI 237 (258)
Q Consensus 168 ~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~--~~~~e~lv~~~~l~~~~~~~Gf~~~~~ 237 (258)
..-|.++..+-++.|..+..-.+..|..+.+...... ....+|+-+|+...+ +++.|.+++..
T Consensus 166 ------~~~n~~fdgy~~~~F~~e~v~~~s~~~~~~l~~~~~lsl~~F~~~~rsws~~~~-akek~~e~i~~ 230 (261)
T KOG3010|consen 166 ------PLRNLLFDGYKTIEFPFESVGMGSQGKPKTLEIPHTLSLEGFSGFLRSWSAYKE-AKEKGLELIAD 230 (261)
T ss_pred ------HHHHhhccccccccccccccCCCCCCCceeehhhHHHHHHHHHHHHhCcHHHHH-HHhcChHHHHH
Confidence 0001122223345565443333455555544222111 112345667777766 44578876643
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.33 E-value=3.1e-11 Score=99.77 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=78.6
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||+|||+|..+..++... .+++++|+++.+++.|++++...+.. ++.+.++|..+... ..++||+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~ 147 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP------AYAPFDR 147 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC------cCCCcCE
Confidence 3478999999999999887666654 48999999999999999998876443 58899999754211 2478999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|++..+.+. +...+.+.|+|||.+++...
T Consensus 148 I~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPE----------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence 998775443 23457889999999998765
No 99
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=102.93 Aligned_cols=134 Identities=17% Similarity=0.130 Sum_probs=99.4
Q ss_pred HHHHHHHHhcC--CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059 20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 20 ~k~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (258)
+-++|+..+.+ ...+|||||||+|.....++.+ ...+++|||+++++.+.|++..+.+.+..+++++++|+.+...
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~- 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK- 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh-
Confidence 34567777765 4678999999999988888877 4479999999999999999999888877799999999855221
Q ss_pred hhhhhcCCceeEEEecccccccc--------------CCHHHHHHHHHHHHhcccCCcEEEEEEcCc--hHHHHHHH
Q 025059 97 TQMQEKANQADLVCCFQHLQMCF--------------ETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~--------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (258)
.. ...+||+|+|+-...-.- +..-.++.+++...++|||||.+.+..+.. ..+...++
T Consensus 110 -~~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~ 183 (248)
T COG4123 110 -AL--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK 183 (248)
T ss_pred -cc--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence 11 345799999974322110 111236889999999999999998885544 23444444
No 100
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.32 E-value=3.7e-11 Score=98.11 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|||+|||+|..+..++.. +..+++++|+|+.+++.++++.+..+.. +++++++|+.+. + .. ....+|.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~-~-~~---~~~~~d~ 112 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC-L-AQ---LAPAPDR 112 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH-H-hh---CCCCCCE
Confidence 47889999999999998888754 3469999999999999999988765432 688999987431 1 01 1234576
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~ 152 (258)
|++.. ......++.++.++|+|||.+++..++...+
T Consensus 113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGL 148 (196)
T ss_pred EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence 64422 1235788999999999999999998876443
No 101
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=4e-11 Score=101.29 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..+.+|||+|||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+.+ .+ +.++||+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~------~~~~fD~ 157 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PL------PGGKFDL 157 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cC------cCCceeE
Confidence 34568999999999999998876 3458999999999999999988776543 68999999855 22 4678999
Q ss_pred EEecccccc------cc----------------CCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 109 VCCFQHLQM------CF----------------ETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 109 V~~~~~l~~------~~----------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|+++...+. .. ........++.++.++|+|||.+++...
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 998543221 00 0012245789999999999999998754
No 102
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.31 E-value=2.5e-12 Score=104.25 Aligned_cols=140 Identities=19% Similarity=0.305 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
-.++||||||||-....+...- .+++|+|||.+|++.|.++-- --.+.++|+.. |.+.. ..+.||+|++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~------YD~L~~Aea~~--Fl~~~--~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGL------YDTLYVAEAVL--FLEDL--TQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccc------hHHHHHHHHHH--Hhhhc--cCCcccchhh
Confidence 4689999999998777775443 489999999999999887632 12334444321 21111 4689999999
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEeccc
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~ 191 (258)
.-++.| ...++.++.-+...|+|||.|.++.-+...
T Consensus 195 aDVl~Y----lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~---------------------------------------- 230 (287)
T COG4976 195 ADVLPY----LGALEGLFAGAAGLLAPGGLFAFSVETLPD---------------------------------------- 230 (287)
T ss_pred hhHHHh----hcchhhHHHHHHHhcCCCceEEEEecccCC----------------------------------------
Confidence 998888 566889999999999999999987433210
Q ss_pred CCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCC
Q 025059 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239 (258)
Q Consensus 192 ~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~ 239 (258)
.|. |-+.. ...|-++...++++++..||+++....
T Consensus 231 ------~~~---f~l~p----s~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 231 ------DGG---FVLGP----SQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred ------CCC---eecch----hhhhccchHHHHHHHHhcCceEEEeec
Confidence 010 22222 234678889999999999999997654
No 103
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.31 E-value=3.3e-11 Score=97.72 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=76.2
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~ 104 (258)
.+++.+|||+|||+|..+..++.. +..+++++|+|+.+ . . .++.++++|+.+....+.+. .+.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--~----~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--I----ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--C----CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 458899999999999998888765 33479999999865 1 1 15778889986643211111 1456
Q ss_pred ceeEEEecccccc----ccCC---HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 105 QADLVCCFQHLQM----CFET---EERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 105 ~fD~V~~~~~l~~----~~~~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+||+|++..+.+. .... .+....++.++.++|+|||.+++.....
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 8999998654321 1111 1335789999999999999999975544
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.31 E-value=5.7e-11 Score=102.53 Aligned_cols=110 Identities=15% Similarity=0.276 Sum_probs=84.2
Q ss_pred CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++++|+.+. + +..+||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence 689999999999998888764 3599999999999999999987765543589999998542 2 2348999998
Q ss_pred ccc-------------ccc----c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 112 FQH-------------LQM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 112 ~~~-------------l~~----~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+-. .++ + -.+....+.++.++.+.|+|||++++.+...
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 521 111 0 0112357889999999999999999986654
No 105
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.30 E-value=3.9e-11 Score=85.96 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=81.0
Q ss_pred EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
+|||+|||+|..+..++.....+++++|+++.+++.+++...... ..++.+...|+.+... ...+++|+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPP-----EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence 489999999999988877555699999999999998885333221 2367888888765432 1357899999988
Q ss_pred ccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 114 ~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+++. .+....+++.+.+.|+|||.++++
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 76642 667889999999999999999876
No 106
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=7.7e-11 Score=100.26 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+.+|||+|||.|-+...+++.. ..+++.+|++..+++.|++++..+... +..++..|+.+.. .++||.|
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v--------~~kfd~I 228 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPV--------EGKFDLI 228 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccc--------cccccEE
Confidence 35599999999999999888874 469999999999999999999877543 2256777764432 3499999
Q ss_pred EeccccccccCCHH-HHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059 110 CCFQHLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (258)
Q Consensus 110 ~~~~~l~~~~~~~~-~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~ 156 (258)
+|+-.+|--..... -..++++...+.|++||.+.+...........+
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L 276 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKL 276 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHH
Confidence 99998885222111 235899999999999999998866554444333
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.29 E-value=7.8e-11 Score=105.19 Aligned_cols=112 Identities=17% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
+++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+. ++.++++|+.+..+. ..++||+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~-----~~~~FDL 322 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP-----SEGKWDI 322 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc-----cCCCccE
Confidence 45679999999999998888765 456899999999999999999876643 789999998553220 2357999
Q ss_pred EEecccccc-----------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 109 VCCFQHLQM-----------------C----FETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 109 V~~~~~l~~-----------------~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|+|+-.... + -...+-.+.++..+.+.|+|||.+++....
T Consensus 323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 999642100 0 011233568888889999999998876543
No 108
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.28 E-value=7.4e-11 Score=95.23 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=85.5
Q ss_pred HHHHHHhcCC--CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-Cchhhh
Q 025059 22 TALIKIYSHP--YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQ 98 (258)
Q Consensus 22 ~~li~~~~~~--~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 98 (258)
..|....++. +.-|||||||+|-...-+...+. ..+|+|||+.|++.|.++-- .-.++.+|+-. .++
T Consensus 39 RaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~------egdlil~DMG~Glpf--- 108 (270)
T KOG1541|consen 39 RALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL------EGDLILCDMGEGLPF--- 108 (270)
T ss_pred HHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh------hcCeeeeecCCCCCC---
Confidence 3444444554 57799999999987777766674 89999999999999987432 22577777643 344
Q ss_pred hhhcCCceeEEEeccccccccC-------CHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 99 MQEKANQADLVCCFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
++++||.|++..++++.+. +...+..++..+..+|++|+..++..-
T Consensus 109 ---rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 109 ---RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred ---CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 7899999998887766533 335678889999999999999999944
No 109
>PRK04457 spermidine synthase; Provisional
Probab=99.28 E-value=1.1e-10 Score=99.56 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=85.8
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.+++.+|||||||+|..+..++.. +..+++++|+++++++.|++.+.......+++++++|+.+ + +....++||
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~--~---l~~~~~~yD 138 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE--Y---IAVHRHSTD 138 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH--H---HHhCCCCCC
Confidence 345689999999999988888766 4468999999999999999987643323378999999743 1 111346899
Q ss_pred EEEecccccc-ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059 108 LVCCFQHLQM-CFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (258)
Q Consensus 108 ~V~~~~~l~~-~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~ 156 (258)
+|++.. .+. .....-....+++++.++|+|||++++...........+
T Consensus 139 ~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~ 187 (262)
T PRK04457 139 VILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRY 187 (262)
T ss_pred EEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHH
Confidence 998743 111 001011236899999999999999999755544333333
No 110
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.27 E-value=7.8e-11 Score=105.74 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||+|.++...+..+..+++++|+|+.+++.|++++..++.. .+++++++|+.+. ...+....++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCEE
Confidence 57899999999999887766666669999999999999999999887654 2689999998542 11221134689999
Q ss_pred EeccccccccCCH-------HHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHh
Q 025059 110 CCFQHLQMCFETE-------ERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (258)
Q Consensus 110 ~~~~~l~~~~~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~ 159 (258)
++.-.. ...+. .....++..+.++|+|||.++....++..-.+.+.+.
T Consensus 298 ilDPP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~ 352 (396)
T PRK15128 298 VMDPPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKI 352 (396)
T ss_pred EECCCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHH
Confidence 986321 11111 3456667788999999999998766543223334443
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=1.3e-10 Score=99.66 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++.. .....++.++++|+... + +.++||+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~------~~~~fD~ 178 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L------PGGRFDL 178 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C------CCCceeE
Confidence 467899999999999998887764 4699999999999999999887 22223789999998432 1 2478999
Q ss_pred EEecccccc------------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 109 VCCFQHLQM------------------C----FETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 109 V~~~~~l~~------------------~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+++....- + ....+....++.++.++|+|||.+++..
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 998532110 0 0123446788999999999999999864
No 112
>PRK00811 spermidine synthase; Provisional
Probab=99.24 E-value=1.2e-10 Score=100.36 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC----CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
+.+.+||+||||+|..+..+++. +..+++++|+++.+++.|++.+.... ...+++++.+|+.. + +....+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~---l~~~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--F---VAETEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--H---HhhCCC
Confidence 45689999999999999988876 55699999999999999999876421 13378999999743 2 112467
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+||+|++-..-++.....-....+++.+.++|+|||++++...
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9999998653332111011237889999999999999988743
No 113
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.24 E-value=3.9e-10 Score=89.52 Aligned_cols=121 Identities=16% Similarity=0.115 Sum_probs=93.7
Q ss_pred HHHHHHHHHhc-CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059 19 FAKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 19 ~~k~~li~~~~-~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (258)
-++.+.+.+.. .|+.+++|+|||||..+..|+.. +..+++++|-++++++..+++....+ ..++.++.+|+.+.-
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L-- 97 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEAL-- 97 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhh--
Confidence 34444455543 48999999999999999999855 44699999999999999999888776 348899999974321
Q ss_pred hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~ 154 (258)
+ ...++|.|++..+ . ....+++.+...|+|||.+++....-+.+..
T Consensus 98 ---~-~~~~~daiFIGGg-~-------~i~~ile~~~~~l~~ggrlV~naitlE~~~~ 143 (187)
T COG2242 98 ---P-DLPSPDAIFIGGG-G-------NIEEILEAAWERLKPGGRLVANAITLETLAK 143 (187)
T ss_pred ---c-CCCCCCEEEECCC-C-------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHH
Confidence 1 1237999988775 2 3788999999999999999998666554443
No 114
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.24 E-value=5.4e-11 Score=98.46 Aligned_cols=110 Identities=25% Similarity=0.195 Sum_probs=83.6
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh--c---------CCCceeEEEEcCCCCCchh
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--Q---------RKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~---------~~~~~~~~~~~d~~~~~~~ 96 (258)
..+++.+||..|||.|.++..++..+. +|+|+|+|+.+++.+.+.... . ....++++.++|+...+..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456778999999999999999999988 999999999999998554321 0 0122578999999774431
Q ss_pred hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
..++||+|.-..+++. .+.+......+.+.++|+|||.+++.
T Consensus 113 -----~~g~fD~iyDr~~l~A--lpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 113 -----DVGKFDLIYDRTFLCA--LPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp -----CHHSEEEEEECSSTTT--S-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred -----hcCCceEEEEeccccc--CCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 2358999988877764 35778899999999999999995444
No 115
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.21 E-value=4.4e-10 Score=90.95 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=81.4
Q ss_pred HHHhcCCCC-EEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh--hh
Q 025059 25 IKIYSHPYV-TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ--MQ 100 (258)
Q Consensus 25 i~~~~~~~~-~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~ 100 (258)
++.++++.. +|||||||||..+..++..-+ -...-.|+++..+..-+......+..--..-+..|+...+-... .+
T Consensus 18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~ 97 (204)
T PF06080_consen 18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP 97 (204)
T ss_pred HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence 344555555 599999999999999988733 35667788887765555544433211011224556654421000 00
Q ss_pred hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
...++||.|+|...+|. .+.+....+++.+.++|++||.|++-
T Consensus 98 ~~~~~~D~i~~~N~lHI--~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 98 LSPESFDAIFCINMLHI--SPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cCCCCcceeeehhHHHh--cCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 13569999999999997 67888999999999999999999886
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=3.9e-10 Score=102.70 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|||+|||+|..+..++.... ..++++|+++.+++.++++++..+. .+.++++|+.+... .. ..++||.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~--~~--~~~~fD~ 316 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQ--WW--DGQPFDR 316 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchh--hc--ccCCCCE
Confidence 3789999999999999988877643 5999999999999999999987654 46889999865321 01 2468999
Q ss_pred EEeccccc------------cccCCHH-------HHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 109 VCCFQHLQ------------MCFETEE-------RARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 109 V~~~~~l~------------~~~~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|++..... + ..+.+ ....++.++.++|+|||.++.+++.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 98533111 1 01122 2357899999999999999988653
No 117
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.20 E-value=1.7e-10 Score=98.55 Aligned_cols=113 Identities=14% Similarity=0.024 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+|||+|||+|+.+..++.. ..+.++++|+++.+++.++++++..+.. ++.+.+.|+...+. ..+.||
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~------~~~~fD 142 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA------AVPKFD 142 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh------hccCCC
Confidence 47889999999999999887665 2358999999999999999999876543 57888888754322 245699
Q ss_pred EEEecccccc---c--------cCCHH-------HHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 108 LVCCFQHLQM---C--------FETEE-------RARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 108 ~V~~~~~l~~---~--------~~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.|++...... . ..+.+ ....++.++.++|||||+++.++..-
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9986321100 0 01111 23569999999999999999886543
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=3e-10 Score=95.20 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f 106 (258)
++.+|||+|||+|..+..++.. +.++++++|+++++++.|+++++..+...+++++.+|+.+. + +.+.. +.++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence 5689999999999877777654 34699999999999999999998887666799999998542 1 11111 24689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+|++-. ..+....++..+.++|+|||.+++.
T Consensus 146 D~VfiDa-------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDA-------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECC-------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9997643 2455778899999999999999875
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.6e-10 Score=99.58 Aligned_cols=101 Identities=11% Similarity=0.023 Sum_probs=77.0
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
.+++.+|||+|||+|..+..+++... +.++++|+++.+++.|++++...+.. ++.++++|+..... ....|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~------~~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP------EFAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc------ccCCc
Confidence 45788999999999999888877532 47999999999999999988766542 68889998754322 23579
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+|++..+... ....+.+.|+|||.+++..
T Consensus 151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence 99998765432 2234677999999988753
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=3.7e-10 Score=102.75 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+|||+|||+|+.+..++.. +.++++++|+++.+++.++++++..+.. ++.+.++|+...+- . ..++||
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~--~---~~~~fD 309 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE--Y---VQDTFD 309 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--h---hhccCC
Confidence 37889999999999988888765 3469999999999999999999876543 57899999865321 0 246899
Q ss_pred EEEecccc---cccc--------CCH-------HHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 108 LVCCFQHL---QMCF--------ETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 108 ~V~~~~~l---~~~~--------~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.|++-... ...- .+. ....+++.++.+.|+|||.++.++++-
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99863211 1100 011 123678999999999999999886654
No 121
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=2.7e-10 Score=90.84 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=77.0
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||+|||+|.++..++... .+++++|+++.+++.+++++.... +++++++|+.+.++ ++.+||.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~---~v~ii~~D~~~~~~------~~~~~d~ 80 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAAD---NLTVIHGDALKFDL------PKLQPYK 80 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCC---CEEEEECchhcCCc------cccCCCE
Confidence 3467899999999999999998874 589999999999999998886422 78999999977654 3457999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|+++...+. +.+.+..++++. .+.++|.+++..-
T Consensus 81 vi~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 81 VVGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred EEECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 988754442 233444444432 2458888888743
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=3.8e-10 Score=103.29 Aligned_cols=110 Identities=25% Similarity=0.204 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
++.+|||+|||+|+.+..++.. +.++++++|+|+.+++.++++++..+.. ++.++++|+.... +.++||+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-------~~~~fD~ 321 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-------PEEQPDA 321 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-------cCCCCCE
Confidence 7789999999999988777654 3358999999999999999999876543 6889999986532 3468999
Q ss_pred EEecc----c--c------ccccCCHH-------HHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 109 VCCFQ----H--L------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 109 V~~~~----~--l------~~~~~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
|++-. . + .+. .+.+ ....++.++.++|+|||+++..+++-
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~-~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWK-LTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhc-CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 98521 0 0 010 1122 23468999999999999999987654
No 123
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.18 E-value=2.1e-10 Score=106.34 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+...++.++++|+.+. + +.++||+|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlI 210 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFI 210 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEE
Confidence 3468999999999998888765 44699999999999999999987665444688999997431 1 34689999
Q ss_pred Eeccccc--------------c-----cc---CCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 110 CCFQHLQ--------------M-----CF---ETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 110 ~~~~~l~--------------~-----~~---~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+++-... + .+ .+.+..+.++.++.++|+|||.+++.+-
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 9853110 0 00 1223457788999999999999988743
No 124
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=1.5e-09 Score=90.47 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=103.2
Q ss_pred CccCCCCCcchHHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCC
Q 025059 2 SVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN 80 (258)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~ 80 (258)
+||+ +|=+|-.. -.||-..+-+.-...+..+||+|||+|..+..++.. +...++++|.|+.++..|.++....+..
T Consensus 122 gVlI-PRpETEE~--V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~ 198 (328)
T KOG2904|consen 122 GVLI-PRPETEEW--VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS 198 (328)
T ss_pred Ceee-cCccHHHH--HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc
Confidence 3555 66665542 244443333333335678999999999999888776 5668999999999999999998877665
Q ss_pred ceeEEEEcCCCCCchhhhhhhcCCceeEEEeccc----------------------cccccCCHHHHHHHHHHHHhcccC
Q 025059 81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQH----------------------LQMCFETEERARRLLQNVSSLLKP 138 (258)
Q Consensus 81 ~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~----------------------l~~~~~~~~~~~~~l~~i~~~Lkp 138 (258)
.++..++-++....+.+. +...++.|+++++-. +..-.+....+..++.-+.|+|+|
T Consensus 199 g~i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~ 277 (328)
T KOG2904|consen 199 GRIEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP 277 (328)
T ss_pred CceEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence 577777666654443322 114689999988631 111123335667788889999999
Q ss_pred CcEEEEEEc---CchHHHHHHH
Q 025059 139 GGYFLGITP---DSSTIWAKYQ 157 (258)
Q Consensus 139 gG~~i~~~~---~~~~~~~~~~ 157 (258)
||.+.+... .+..+.+...
T Consensus 278 gg~~~le~~~~~~~~~lv~~~m 299 (328)
T KOG2904|consen 278 GGFEQLELVERKEHSYLVRIWM 299 (328)
T ss_pred CCeEEEEecccccCcHHHHHHH
Confidence 999998854 4455555444
No 125
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.17 E-value=1.5e-10 Score=94.23 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
...+.||+|+|-|+.+..++..-+.+|..+|+.+..++.|++.+..... .-..+.+..+.+-.. ...+||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P------~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTP------EEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccC------CCCcEeEEE
Confidence 3578999999999999888777778999999999999999987655211 135677776543211 357999999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
++.++.| .+.+++..+|+.+...|+|+|++++-
T Consensus 128 ~QW~lgh--LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCLGH--LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EES-GGG--S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ehHhhcc--CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 9999988 68899999999999999999988774
No 126
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.16 E-value=7.6e-10 Score=93.75 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=79.7
Q ss_pred CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++...++ ..++++|+.+.. ... ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l-~~~---~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDAL-PTA---LRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhc-chh---cCCCEeEEE
Confidence 468999999999999888765 33489999999999999999987653 478889875421 100 135799999
Q ss_pred eccccc------c------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 111 CFQHLQ------M------------C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 111 ~~~~l~------~------------~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
++--.. . . -...+-.+.++..+.++|+|||.+++.+...
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 864211 0 0 0112235688899999999999999886543
No 127
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=7.6e-10 Score=101.02 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+|||+|||+|+.+..++.. +.++++++|+++.+++.+++++...+.. ++.++++|+...+- ......++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~--~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLE--LKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccc--ccccccccCC
Confidence 37899999999999999888775 3458999999999999999999877654 58999999865431 0000246899
Q ss_pred EEEecc------cccccc-----CCHHH-------HHHHHHHHHhcccCCcEEEEEEcC
Q 025059 108 LVCCFQ------HLQMCF-----ETEER-------ARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 108 ~V~~~~------~l~~~~-----~~~~~-------~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
.|++.. +++..- .+.++ ...++.++.++|||||.++.++..
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 998632 111100 01111 468899999999999999877544
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.15 E-value=4.6e-10 Score=107.98 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=89.9
Q ss_pred HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcC
Q 025059 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKA 103 (258)
Q Consensus 25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~ 103 (258)
+..+. ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..++.. .++.++++|+.+ + +....
T Consensus 533 ~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~--~---l~~~~ 606 (702)
T PRK11783 533 IGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA--W---LKEAR 606 (702)
T ss_pred HHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH--H---HHHcC
Confidence 33444 47899999999999999998877768999999999999999999877654 368999999743 1 11124
Q ss_pred CceeEEEeccccc-------cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 104 NQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 104 ~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
++||+|++.-.-. ..+........++..+.++|+|||.+++.+...
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 6899998853210 122334567788999999999999998875443
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.14 E-value=3.3e-10 Score=93.06 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=75.0
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
++|+.+|||||||+|..+.-++.. ..+.|+++|+.+..++.|++++...+.. ++.+.++|...... ....|
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~------~~apf 142 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP------EEAPF 142 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG------GG-SE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc------cCCCc
Confidence 679999999999999888777765 3347999999999999999999876543 78999999743221 35689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|.|++..+... .-..+.+.|++||++++-.-
T Consensus 143 D~I~v~~a~~~----------ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPE----------IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccch----------HHHHHHHhcCCCcEEEEEEc
Confidence 99999876543 22346678999999998644
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.13 E-value=1.2e-09 Score=99.57 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||+|+.+..++.. +.++++++|+++.+++.++++++..+....+.+..+|....... ...++||.|
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~----~~~~~fD~V 313 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW----AENEQFDRI 313 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc----ccccccCEE
Confidence 7899999999999999888775 34699999999999999999998765432344466665432210 024689999
Q ss_pred Eecc------cccccc-----CCHH-------HHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQ------HLQMCF-----ETEE-------RARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~------~l~~~~-----~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
++-. .++..- .+.+ ....++.++.++|||||.++.++++-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 8531 222100 0111 24789999999999999999886643
No 131
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.13 E-value=2.7e-09 Score=89.89 Aligned_cols=143 Identities=19% Similarity=0.162 Sum_probs=91.8
Q ss_pred cCCCCCcchHHhHHHHHHHHHHHHhcC---CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC--
Q 025059 4 LPIPRSELTHHRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-- 78 (258)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~li~~~~~---~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-- 78 (258)
|...+.-.....+..|....+.+.+.+ ++.++||||||+-.....-+.....+++..|.++..+++.++-++..+
T Consensus 26 Y~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~ 105 (256)
T PF01234_consen 26 YSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAF 105 (256)
T ss_dssp HSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS-
T ss_pred cCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCC
Confidence 343444444445667777677666664 567999999998543222222345689999999999987766443210
Q ss_pred --------------C---------Cc--ee-EEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHH
Q 025059 79 --------------K---------NF--IA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132 (258)
Q Consensus 79 --------------~---------~~--~~-~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 132 (258)
. .. .+ .++.+|+.+.+........+.+||+|++.+++..+..+.+....+++++
T Consensus 106 DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni 185 (256)
T PF01234_consen 106 DWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNI 185 (256)
T ss_dssp -THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHH
T ss_pred CccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHH
Confidence 0 00 12 5677888765432110001246999999999999999999999999999
Q ss_pred HhcccCCcEEEEEE
Q 025059 133 SSLLKPGGYFLGIT 146 (258)
Q Consensus 133 ~~~LkpgG~~i~~~ 146 (258)
.++|||||.|++..
T Consensus 186 ~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 186 SSLLKPGGHLILAG 199 (256)
T ss_dssp HTTEEEEEEEEEEE
T ss_pred HHHcCCCcEEEEEE
Confidence 99999999999873
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=5.5e-10 Score=94.46 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||+|..+..++... ..+++|+|+++.|++.|+++.. ++.++++|+.+.. ...+||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~-------~~~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFE-------SNEKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhc-------ccCCCcEE
Confidence 45789999999998887776653 4599999999999999988642 5788999986532 24689999
Q ss_pred EeccccccccCC-HHH---------------HHHHHHHHHhcccCCcEEEEE
Q 025059 110 CCFQHLQMCFET-EER---------------ARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 110 ~~~~~l~~~~~~-~~~---------------~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+++-..+..-.. ... +..++.....+|+|+|.+++.
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 997655531110 011 356778889999999977666
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.6e-09 Score=93.11 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=85.0
Q ss_pred EEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 025059 34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~ 112 (258)
+|||||||+|..+..++.... ..|+|+|+|+.+++.|+++...++. .++.+++.|....- .++||+|+++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~--------~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL--------RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc--------CCceeEEEeC
Confidence 799999999999999988754 5999999999999999999988865 35667777764422 3489999986
Q ss_pred ccc---------------------ccccCCHHHHHHHHHHHHhcccCCcEEEEEEc-Cc-hHHHHHHH
Q 025059 113 QHL---------------------QMCFETEERARRLLQNVSSLLKPGGYFLGITP-DS-STIWAKYQ 157 (258)
Q Consensus 113 ~~l---------------------~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~-~~-~~~~~~~~ 157 (258)
--- -.-..+.+-.+.++.++.+.|+|||.+++..- +. ..+.+.+.
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 311 00012235678999999999999999988854 33 34444443
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=2e-09 Score=98.53 Aligned_cols=113 Identities=16% Similarity=0.077 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+|||+|||+|..+..++.. +.++++++|+++.+++.++++++..+.. ++.++++|+..... . ..++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence 46789999999999999888775 3469999999999999999999877653 58999999865321 1 126899
Q ss_pred EEEecccccc--c---------cCCHHH-------HHHHHHHHHhcccCCcEEEEEEcC
Q 025059 108 LVCCFQHLQM--C---------FETEER-------ARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 108 ~V~~~~~l~~--~---------~~~~~~-------~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+|++...... . ..+..+ ...++.++.++|+|||.++.+++.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 9987532110 0 011122 256899999999999999977554
No 135
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.08 E-value=2.2e-09 Score=87.26 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-------CC---CeEEEEecChhHHHHHHHHH--------------H-----hcC---
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-------LI---ANYIGIDVATSGIGEARDTW--------------E-----NQR--- 78 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-------~~---~~v~gvD~s~~~l~~a~~~~--------------~-----~~~--- 78 (258)
+..+|+..||++|.-.--++.. .. -+++|+|+|+.+|+.|++-. . ..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999654333221 11 28999999999999998721 0 000
Q ss_pred -----CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 79 -----KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 79 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
....+.|.+.|+.+... ..+.||+|+|-.++.| -+.+....+++.+++.|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY--F~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY--FDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG--S-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE--eCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01247899999876222 4689999999999998 45788899999999999999999875
No 136
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.08 E-value=1.7e-09 Score=96.30 Aligned_cols=130 Identities=14% Similarity=0.102 Sum_probs=99.6
Q ss_pred HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhc
Q 025059 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEK 102 (258)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 102 (258)
.+..... |.+|||+-|=||+++...+..+..++++||.|..+++.|+++++-++.. .++.|+++|+.+ +.+.....
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~--~l~~~~~~ 287 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK--WLRKAERR 287 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH--HHHHHHhc
Confidence 3445556 8999999999999999999989889999999999999999999888652 357999999854 33333335
Q ss_pred CCceeEEEeccc-----cccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059 103 ANQADLVCCFQH-----LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (258)
Q Consensus 103 ~~~fD~V~~~~~-----l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~ 156 (258)
..+||+|++--. -...+....+...++..+.++|+|||.+++.+.....-...+
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f 346 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLF 346 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHH
Confidence 669999987321 111234456788999999999999999999977764333333
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.07 E-value=3.6e-09 Score=90.67 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
.+.+||+||||+|..+..++... ..+++++|+++++++.|++.+.... ...+++++.+|... + +....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~--~---l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK--F---LADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH--H---HHhCCCCc
Confidence 45699999999999888887764 5689999999999999998775421 12257777777532 1 11135789
Q ss_pred eEEEeccccccccCCHHH--HHHHHHHHHhcccCCcEEEEEEcC
Q 025059 107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|+|++...... ..... ...+++.+.++|+|||++++...+
T Consensus 147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 99988653221 11122 468889999999999999987443
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.07 E-value=5.3e-09 Score=91.82 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHH--HH---hcC-CCceeEEEEcCCCCCchhhhhhhc
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK 102 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~--~~---~~~-~~~~~~~~~~d~~~~~~~~~~~~~ 102 (258)
+...+||+||||+|..+..+++.+ ..+++++|+++++++.|++. +. ... .+.+++++.+|+.. + +...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--f---L~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--F---LSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--H---HHhc
Confidence 355799999999999888888764 46999999999999999962 11 111 13378999999743 1 2224
Q ss_pred CCceeEEEeccccccc-cCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 103 ~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
.++||+|++-..-... ....-....+++.+.+.|+|||+++....
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 5789999987421110 00112236789999999999999988743
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-09 Score=87.02 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=81.7
Q ss_pred HHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059 23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (258)
Q Consensus 23 ~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (258)
.+++.. ..|+.+|||||||+|-.+.-+++... +|+.+|..+...+.|+++++..+.. ++.+.++|...-.-
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~------ 134 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP------ 134 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC------
Confidence 334433 45899999999999987777766544 9999999999999999999987654 59999999755332
Q ss_pred cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+...||.|++..+... .=+.+.+.|++||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~----------vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPE----------VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCC----------CCHHHHHhcccCCEEEEEEc
Confidence 3589999988775432 22345678999999988643
No 140
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.2e-09 Score=88.98 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=94.4
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+.|+++|||.|.|+|.++..++.. +.++|+.+|+-++.++.|+++++..+.+.++.+...|+.+... ...|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v 164 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV 164 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence 459999999999999999999864 5579999999999999999999987666568999999876544 3489
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHH
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (258)
|.|+. +.++.-.+++++.++|+|||.+++-.|..+.+.+.+.
T Consensus 165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence 99954 2455778999999999999999999999877665544
No 141
>PLN02366 spermidine synthase
Probab=99.07 E-value=2e-09 Score=93.49 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=82.5
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
.+++.+||+||||.|..+..+++.+ ..+++.+|+++.+++.|++.+.... ...+++++.+|+.. +.... +.+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~--~l~~~--~~~ 164 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE--FLKNA--PEG 164 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--HHhhc--cCC
Confidence 3467899999999999999998874 4689999999999999999876421 12378999999733 11111 256
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+||+|++-..-.......--...+++.+.++|+|||+++...
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 899998854332211111124678999999999999998753
No 142
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.05 E-value=8.7e-09 Score=84.10 Aligned_cols=107 Identities=7% Similarity=-0.002 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|.++..++..+..+++++|+++.+++.++++++..+.. ++.++++|+.+. +.....+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~-----l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSF-----LAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHH-----HhhcCCCceEEE
Confidence 57899999999999888665666679999999999999999988776543 688999997431 111245799998
Q ss_pred eccccccccCCHHHHHHHHHHHHh--cccCCcEEEEEEcC
Q 025059 111 CFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPD 148 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~~i~~~~~ 148 (258)
+.-..+. .-...++..+.. .|+|+|++++..+.
T Consensus 127 ~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 127 VDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 8754221 123344454444 48999999988554
No 143
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.04 E-value=1.4e-09 Score=93.78 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=87.7
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
+-++..|||+|||||.++...++.|..+|+++|.|.-+ +.|.+....++....++++++.+.+..+ |.++.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------CccceeE
Confidence 34789999999999999888888898899999987655 8899999888777678999999877655 5689999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i 143 (258)
|++-+.-.+ +..+..++..+-.--+-|+|||.++
T Consensus 131 IvSEWMGy~-Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYF-LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence 998775443 3335667778888889999999875
No 144
>PHA03412 putative methyltransferase; Provisional
Probab=99.02 E-value=1.6e-09 Score=89.66 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++.. ++.++++|+....+ +++|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-------~~~F 115 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-------DTLF 115 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-------cCCc
Confidence 3679999999999999888764 23489999999999999997753 47889999865332 4689
Q ss_pred eEEEeccccccc--------cCCHHHHHHHHHHHHhcccCCcE
Q 025059 107 DLVCCFQHLQMC--------FETEERARRLLQNVSSLLKPGGY 141 (258)
Q Consensus 107 D~V~~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~ 141 (258)
|+|+++--.+-. ..+..-...++..+.+++++|+.
T Consensus 116 DlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 116 DMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999997543311 01123356688888887777764
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.4e-09 Score=86.22 Aligned_cols=73 Identities=22% Similarity=0.090 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
.+.+|+|+|||||.++...+..+...|+|+|+++++++.++++.... ..++.|+++|+.+ ....+|.|+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~---------~~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSD---------FRGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhh---------cCCccceEE
Confidence 57889999999999999998889889999999999999999998773 4489999999865 256889888
Q ss_pred eccc
Q 025059 111 CFQH 114 (258)
Q Consensus 111 ~~~~ 114 (258)
++-.
T Consensus 114 mNPP 117 (198)
T COG2263 114 MNPP 117 (198)
T ss_pred ECCC
Confidence 8643
No 146
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.99 E-value=8.1e-09 Score=86.73 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=90.8
Q ss_pred HHHHhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (258)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (258)
+...-+.||.+|||.|.|+|.++..+++. +.++|+..|+.++.++.|++.++..++...+.+.+.|+....+...
T Consensus 33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~--- 109 (247)
T PF08704_consen 33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE--- 109 (247)
T ss_dssp HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT---
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---
Confidence 33344669999999999999999999875 5579999999999999999999998876689999999976555211
Q ss_pred cCCceeEEEeccccccccCCHHHHHHHHHHHHhcc-cCCcEEEEEEcCchHHHHHHH
Q 025059 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQ 157 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpgG~~i~~~~~~~~~~~~~~ 157 (258)
.+..+|.|+.- .++.-.++..+.++| ++||.+.+-.|.-+.+.+...
T Consensus 110 ~~~~~DavfLD---------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~ 157 (247)
T PF08704_consen 110 LESDFDAVFLD---------LPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVE 157 (247)
T ss_dssp -TTSEEEEEEE---------SSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHH
T ss_pred ccCcccEEEEe---------CCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHH
Confidence 24689999543 233456888899999 899999999999876655544
No 147
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.98 E-value=3.7e-09 Score=89.02 Aligned_cols=96 Identities=26% Similarity=0.290 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
+..+|+|||+|.|..+..+++. +.-+++..|. |..++.+++ .. ++.++.+|+. .++ +. +|+|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~----rv~~~~gd~f-~~~------P~--~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---AD----RVEFVPGDFF-DPL------PV--ADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TT----TEEEEES-TT-TCC------SS--ESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---cc----ccccccccHH-hhh------cc--ccce
Confidence 5678999999999999999887 4458999998 888888877 22 8999999997 444 33 9999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~~i~~ 145 (258)
++...+|. .+.++...+|+++++.|+|| |.+++.
T Consensus 163 ~l~~vLh~--~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHD--WSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGG--S-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhh--cchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99999997 57889999999999999999 999887
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.98 E-value=6.8e-09 Score=84.59 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
....+||||||.|.++..++.. +...++|+|++...+..|.++....++. ++.++++|+.. +...+. ++++.|.|
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~--~l~~~~-~~~~v~~i 92 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARE--LLRRLF-PPGSVDRI 92 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTT--HHHHHS-TTTSEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHH--HHhhcc-cCCchheE
Confidence 3348999999999999999887 4569999999999999999888776554 89999999855 222221 46899999
Q ss_pred Eecccccccc----CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~----~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.++|.=.+-- ...--...++..++++|+|||.+.+.+=+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 8887432200 000013689999999999999998775444
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.97 E-value=9.8e-09 Score=94.00 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.++.+|||+|||+|.++..++... .+++|+|+|+.|++.|+++....+.. ++.++++|+.+.. ...+..+++||+|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l--~~~~~~~~~fD~V 371 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDF--TDQPWALGGFDKV 371 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhh--hhhhhhcCCCCEE
Confidence 467899999999999999887765 59999999999999999988766543 6899999985421 1100124679999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
++.-.-. .....++.+.+ ++|++++++++
T Consensus 372 i~dPPr~-------g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 372 LLDPPRA-------GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EECcCCc-------ChHHHHHHHHh-cCCCeEEEEEe
Confidence 8754211 13344555555 68999888875
No 150
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.96 E-value=7.2e-09 Score=82.93 Aligned_cols=113 Identities=19% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
.++.+|||||||+|-....++.. +..+|+.+|.++ .++..+.+...+. ...++.+...|..+....... ...+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence 36789999999999877777777 567999999998 8888888887654 334678888887553211122 35689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
|+|++.-++.. .+....++..+.++|+|+|.+++..+..
T Consensus 121 D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999987765 5668889999999999999988775543
No 151
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=2e-09 Score=87.52 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=92.8
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
...++|||||-|.....+...+..+++-+|.|-.|++.++..-. .+..+....+|-...++ +++++|+|++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd---p~i~~~~~v~DEE~Ldf------~ens~DLiis 143 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD---PSIETSYFVGDEEFLDF------KENSVDLIIS 143 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC---CceEEEEEecchhcccc------cccchhhhhh
Confidence 45799999999999999988899999999999999998865421 22366777888666666 7899999999
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK 155 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~ 155 (258)
+.++|| ..++...+..++..|||+|.||.+...++.+++.
T Consensus 144 SlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 144 SLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 999999 5668889999999999999999998888766543
No 152
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.94 E-value=2.3e-08 Score=81.08 Aligned_cols=113 Identities=8% Similarity=-0.006 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||++||+|.+...++..+...++++|.++.+++.++++++..+...++.++++|+... + ..+......||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l-~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-L-KFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-H-HHhhccCCCceEEE
Confidence 578999999999999999999888799999999999999999888775544688999997331 1 11111122478886
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
.--.... ...+..-..+.+ ...|+++|++++..+.
T Consensus 127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence 6432211 112222223322 4579999998887554
No 153
>PLN02476 O-methyltransferase
Probab=98.94 E-value=1.5e-08 Score=86.51 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f 106 (258)
+..+|||||||+|..+..++.. ..++++.+|.+++.++.|++.++..+...+++++.+|+.+ ..+.+. ...++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--SLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcccCCCC
Confidence 4689999999999988888764 2458999999999999999999988776689999999743 111111 114689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+|++-. ...+...+++.+.++|+|||.+++.
T Consensus 196 D~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9997654 2556889999999999999999877
No 154
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.94 E-value=1.3e-08 Score=87.16 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=86.0
Q ss_pred HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCC
Q 025059 26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
..++ .+.+|||+-|=||+++...+..+..+++++|.|..+++.|++++.-++.. .++.|++.|+.+ +...+. ..+
T Consensus 119 ~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~--~l~~~~-~~~ 194 (286)
T PF10672_consen 119 RKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK--FLKRLK-KGG 194 (286)
T ss_dssp HHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH--HHHHHH-HTT
T ss_pred HHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH--HHHHHh-cCC
Confidence 3444 47899999999999999988888889999999999999999999877643 368999999844 222222 357
Q ss_pred ceeEEEec---cccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 105 QADLVCCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 105 ~fD~V~~~---~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
+||+|++- |+-. .+.-..+...++..+.++|+|||.+++++.+..
T Consensus 195 ~fD~IIlDPPsF~k~-~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 195 RFDLIILDPPSFAKS-KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp -EEEEEE--SSEESS-TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCCEEEECCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 99999883 2111 122245778899999999999999988766653
No 155
>PRK03612 spermidine synthase; Provisional
Probab=98.93 E-value=9e-09 Score=95.90 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHH--HHhc---C-CCceeEEEEcCCCCCchhhhhhhc
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDT--WENQ---R-KNFIAEFFEADPCAENFETQMQEK 102 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~--~~~~---~-~~~~~~~~~~d~~~~~~~~~~~~~ 102 (258)
+++.+|||||||+|..+..+.+.+. .+++++|+++++++.|+++ +... . .+.+++++.+|..+ + +...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~---l~~~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--W---LRKL 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--H---HHhC
Confidence 4568999999999999988887754 7999999999999999983 3221 1 12378899999743 1 1113
Q ss_pred CCceeEEEeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
.++||+|++...-..... ..-....+++.+.++|+|||.+++...
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 579999998753322000 001135688999999999999998743
No 156
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.93 E-value=1.2e-08 Score=83.71 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f 106 (258)
...+||||||++|..+..++.. ..++++.+|++++..+.|++.+...+...+++++.+|+.+ ..+.+.. +.++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHHHhccCCCce
Confidence 4579999999999998888876 2469999999999999999999877666689999999743 2122211 13689
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+|.+-.. ..+....+..+.++|+|||++++.
T Consensus 123 D~VFiDa~-------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDAD-------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEEST-------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccc-------ccchhhHHHHHhhhccCCeEEEEc
Confidence 99977653 344777888899999999999988
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=83.74 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC-CCcee----------EEE------Ec----
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-KNFIA----------EFF------EA---- 88 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~----------~~~------~~---- 88 (258)
.+..+|||||-+|.++..+++. +...+.|+||++..|+.|++..+-.. ....+ .+. .+
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999998876 66689999999999999999764210 00000 000 00
Q ss_pred --CCCC-Cc-------hhh--hhhhcCCceeEEEeccccccc--cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 89 --DPCA-EN-------FET--QMQEKANQADLVCCFQHLQMC--FETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 89 --d~~~-~~-------~~~--~~~~~~~~fD~V~~~~~l~~~--~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|..+ .. ++. .+......||+|.|.....++ -.+.+.+..+++.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 00 000 011145789999987654332 234678999999999999999999886
No 158
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.89 E-value=1.3e-07 Score=82.52 Aligned_cols=114 Identities=12% Similarity=0.048 Sum_probs=78.4
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHH-hcCCCceeEEEEcCCCCCchhhhhhh
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE 101 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (258)
.++++..|+|+|||+|.-+..++.. ....|+++|+|..+|+.+.+++. ..-....+.-+++|..+.- ..++.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l--~~l~~ 150 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL--AWLKR 150 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH--hhccc
Confidence 3456789999999999766555443 23479999999999999999988 3322234555788764321 00111
Q ss_pred --cCCceeEEEecc-ccccccCCHHHHHHHHHHHHh-cccCCcEEEEE
Q 025059 102 --KANQADLVCCFQ-HLQMCFETEERARRLLQNVSS-LLKPGGYFLGI 145 (258)
Q Consensus 102 --~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~-~LkpgG~~i~~ 145 (258)
......+|+... ++.+ -..+....+|+++++ .|+|||.+++-
T Consensus 151 ~~~~~~~r~~~flGSsiGN--f~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGN--FSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccccCCccEEEEeCccccC--CCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 123456666554 5555 346778899999999 99999998876
No 159
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.88 E-value=8.2e-08 Score=81.19 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC---CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
...+||||+||.|..+....... ...+...|.|+..++..++..+..++..-+.|.++|+++..- +..-....+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~---l~~l~p~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS---LAALDPAPT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH---hhccCCCCC
Confidence 45799999999999888776652 358999999999999999999998877567999999977432 211245678
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+++++. ++-.|.+.......+..+.+++.|||++|.|.
T Consensus 212 l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 212 LAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 888775 44467777778889999999999999999983
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.88 E-value=1.9e-08 Score=91.64 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCCccHHHHHHcC-----CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+..|||+|||+|.++...++.+ ..+|++++-++.++...+++...++++.+++++++|+.+..+ +.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 5789999999999887766653 459999999999998888887777776689999999988765 5699
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i 143 (258)
|+|++-.. .. |...+-..+.+....+.|||||++|
T Consensus 260 DIIVSElL-Gs-fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSELL-GS-FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEecc-CC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence 99988542 22 2233355667899999999999875
No 161
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.88 E-value=2.4e-08 Score=85.81 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCccHHHHHHc-----C----CCeEEEEecChhHHHHHHHHH-H-----------------hc-----C-
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-----L----IANYIGIDVATSGIGEARDTW-E-----------------NQ-----R- 78 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-----~----~~~v~gvD~s~~~l~~a~~~~-~-----------------~~-----~- 78 (258)
..+|+..||+||.-.--++.. + .-+++|+|+|+.+|+.|++.. . .. +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999654333221 1 137999999999999998731 0 00 0
Q ss_pred ------CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 79 ------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
....+.|.+.|+.+.++. +.+.||+|+|..++.| -+.+....++..+.+.|+|||++++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy--F~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY--FDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc--CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 112468888888664331 2578999999988887 35778999999999999999988765
No 162
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.87 E-value=1.3e-08 Score=89.08 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.|+++.+..+. .+++|+++|+.+... ...++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~-----~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT-----AQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH-----hcCCCCeEEE
Confidence 46899999999999999998866 5999999999999999999887765 268999999744211 1235799998
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+.-. +. . -...+++ ....+.|++++++++
T Consensus 246 ~dPP-r~--G---~~~~~~~-~l~~~~~~~ivyvsc 274 (315)
T PRK03522 246 VNPP-RR--G---IGKELCD-YLSQMAPRFILYSSC 274 (315)
T ss_pred ECCC-CC--C---ccHHHHH-HHHHcCCCeEEEEEC
Confidence 7642 11 0 0112222 233367887777663
No 163
>PLN02672 methionine S-methyltransferase
Probab=98.87 E-value=2.1e-08 Score=99.17 Aligned_cols=113 Identities=17% Similarity=0.068 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCC---------------CceeEEEEcCCCCCch
Q 025059 32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK---------------NFIAEFFEADPCAENF 95 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~~~~~~d~~~~~~ 95 (258)
+.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++...+.. ..++.|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999988763 46999999999999999998875421 1268999999854221
Q ss_pred hhhhhhcCCceeEEEeccccc---------------------c------c-------cCCHHHHHHHHHHHHhcccCCcE
Q 025059 96 ETQMQEKANQADLVCCFQHLQ---------------------M------C-------FETEERARRLLQNVSSLLKPGGY 141 (258)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~---------------------~------~-------~~~~~~~~~~l~~i~~~LkpgG~ 141 (258)
....+||+|+++-..- | + -.+..-.+.++.+..++|+|||.
T Consensus 199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 0123699998863110 0 0 11223347889999999999999
Q ss_pred EEEEEcCc
Q 025059 142 FLGITPDS 149 (258)
Q Consensus 142 ~i~~~~~~ 149 (258)
+++.+-..
T Consensus 274 l~lEiG~~ 281 (1082)
T PLN02672 274 MIFNMGGR 281 (1082)
T ss_pred EEEEECcc
Confidence 99885443
No 164
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=6.1e-08 Score=79.70 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEE-cCCCCCchhhhhhhcCCcee
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~fD 107 (258)
+..+|||||++.|-.+..++.. + .++++.+|+++++.+.|++.+...+...++..+. +|..+. + +. ...++||
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l-~~--~~~~~fD 134 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-L-SR--LLDGSFD 134 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-H-Hh--ccCCCcc
Confidence 5689999999999888877776 3 4689999999999999999999888776788888 465321 1 11 1468999
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|.+-. ...+...++..+.++|+|||.+++.
T Consensus 135 liFIDa-------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDA-------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 997654 3566889999999999999999987
No 165
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.82 E-value=6.5e-08 Score=77.82 Aligned_cols=124 Identities=20% Similarity=0.252 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHc--CCC--------eEEEEecChhHHHHHHHHHHhcCCCceeE
Q 025059 16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWENQRKNFIAE 84 (258)
Q Consensus 16 ~~~~~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~--~~~--------~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 84 (258)
++..+...|+... .+++..|||..||+|..+...+.. ... +++|.|+++.+++.|++++...+....+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 4455555555544 347889999999999998776554 221 38999999999999999998877666789
Q ss_pred EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCC----HHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+.+.|+.+.++ .++.+|+|++.--...-... ..-...+++++.++|++ ..++++.
T Consensus 92 ~~~~D~~~l~~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELPL------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EEE--GGGGGG------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EEecchhhccc------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 99999877664 57899999997533221121 23346788999999999 4444443
No 166
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.81 E-value=1.9e-08 Score=81.33 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
+++..|-|+|||.+.++..+ ..+. .|...|+-+. +-..+.+|+.+.|+ ++++.|+|
T Consensus 71 ~~~~viaD~GCGdA~la~~~-~~~~-~V~SfDLva~----------------n~~Vtacdia~vPL------~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV-PNKH-KVHSFDLVAP----------------NPRVTACDIANVPL------EDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S----EEEEESS-S----------------STTEEES-TTS-S--------TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhc-ccCc-eEEEeeccCC----------------CCCEEEecCccCcC------CCCceeEE
Confidence 45689999999999877554 2233 7999998532 12368899999998 78999999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
++..+|.. .+...++.+..|+|||||.+.+.-..
T Consensus 127 VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 127 VFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEec
Confidence 88877764 24778999999999999999988433
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.80 E-value=2.9e-08 Score=86.15 Aligned_cols=111 Identities=21% Similarity=0.194 Sum_probs=86.1
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc-CCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~fD 107 (258)
+.+|..|||-=||||+.+....-.|. +++|+|++..|++-|+.+++..+.. ...+... |+...++ +..++|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl------~~~~vd 266 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPL------RDNSVD 266 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCC------CCCccc
Confidence 45889999999999999988866676 9999999999999999999876432 3334444 9988887 556899
Q ss_pred EEEeccccccc----cCC-HHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 108 LVCCFQHLQMC----FET-EERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 108 ~V~~~~~l~~~----~~~-~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
.|++--...-. -.. .+-...+++.++++|++||++++..|
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99874322110 011 34578999999999999999999988
No 168
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.4e-08 Score=76.91 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
.|.+++|||||.|.++......+...++|+||++++++.++++.+.... ++++.++|+.+..+ ..+.||.++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~------~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLEL------KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhc------cCCeEeeEE
Confidence 6899999999999888777666777999999999999999998877644 67899999977665 568999998
Q ss_pred ecccc
Q 025059 111 CFQHL 115 (258)
Q Consensus 111 ~~~~l 115 (258)
++--+
T Consensus 120 iNppF 124 (185)
T KOG3420|consen 120 INPPF 124 (185)
T ss_pred ecCCC
Confidence 87533
No 169
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.76 E-value=8e-08 Score=77.48 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+||||.||+|.+....+.++..+++.+|.++.++...+++++..+...++..+..|+.. ..........+||+|.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~--~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK--FLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH--HHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH--HHHhhcccCCCceEEE
Confidence 58999999999999999999999999999999999999999999877655468888888632 1112222468999997
Q ss_pred eccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcCc
Q 025059 111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS 149 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~~ 149 (258)
+-- .|... . ....++..+. ..|+++|.+++.....
T Consensus 120 lDP--PY~~~-~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LDP--PYAKG-L-YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E----STTSC-H-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ECC--Ccccc-h-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 643 33112 1 1356666666 8999999999886554
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.75 E-value=4.4e-08 Score=84.74 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh
Q 025059 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (258)
+++...+-.....++.+|||||||+|.++..++.... +++++|+++.+++.+++++...+...+++++++|+...++
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-- 99 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence 3444333333345789999999999999998877654 8999999999999999988764423378999999865433
Q ss_pred hhhhcCCceeEEEecc
Q 025059 98 QMQEKANQADLVCCFQ 113 (258)
Q Consensus 98 ~~~~~~~~fD~V~~~~ 113 (258)
..||.|+++.
T Consensus 100 ------~~~d~VvaNl 109 (294)
T PTZ00338 100 ------PYFDVCVANV 109 (294)
T ss_pred ------cccCEEEecC
Confidence 3689888754
No 171
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.75 E-value=6e-08 Score=80.56 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=85.7
Q ss_pred CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
..+||||||.|.++..++... ...++|+|+....+..|.++....+.. ++.+++.|+.. +...+. ++++.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~--~l~~~~-~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVE--VLDYLI-PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHH--HHHhcC-CCCCeeEEEE
Confidence 489999999999999998874 458999999999999999999887654 78899999744 222221 4569999988
Q ss_pred ccccccc-c---CCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 112 FQHLQMC-F---ETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 112 ~~~l~~~-~---~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
+|.=.+- - ...--...+++.++++|+|||.+.+.+=+..
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence 8743220 0 0001136899999999999999988755543
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.75 E-value=1.4e-07 Score=81.00 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=59.2
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||+|||+|.++..++..+. +++|+|+++.|++.++++.... ++.++++|+...++. +..+|.
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~----~v~~i~~D~~~~~~~------~~~~~~ 108 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAED----NLTIIEGDALKVDLS------ELQPLK 108 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccC----ceEEEEChhhcCCHH------HcCcce
Confidence 35788999999999999999988865 9999999999999998877432 789999999776541 111577
Q ss_pred EEecc
Q 025059 109 VCCFQ 113 (258)
Q Consensus 109 V~~~~ 113 (258)
|+++.
T Consensus 109 vv~Nl 113 (272)
T PRK00274 109 VVANL 113 (272)
T ss_pred EEEeC
Confidence 77654
No 173
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.75 E-value=2.8e-07 Score=78.33 Aligned_cols=125 Identities=20% Similarity=0.234 Sum_probs=86.6
Q ss_pred HHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHH----cC------CCeEEEEecChhHHHHHHHHH-H------
Q 025059 13 HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET----AL------IANYIGIDVATSGIGEARDTW-E------ 75 (258)
Q Consensus 13 ~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~----~~------~~~v~gvD~s~~~l~~a~~~~-~------ 75 (258)
..-+.+.+...|+..-.....+|+-.||+||.-.--++. .. .-+++|+|||..+|+.|+.-. +
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 333444444444433222468999999999964433322 21 238999999999999997621 1
Q ss_pred h------------cC---------CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHh
Q 025059 76 N------------QR---------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134 (258)
Q Consensus 76 ~------------~~---------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 134 (258)
. .. ....+.|.+.|+...+. ..+.||+|+|-.++-| -+.+....++..++.
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY--Fd~~~q~~il~~f~~ 229 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY--FDEETQERILRRFAD 229 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe--eCHHHHHHHHHHHHH
Confidence 0 00 11135788888766553 2578999999999998 457888999999999
Q ss_pred cccCCcEEEEE
Q 025059 135 LLKPGGYFLGI 145 (258)
Q Consensus 135 ~LkpgG~~i~~ 145 (258)
.|+|||++++-
T Consensus 230 ~L~~gG~LflG 240 (268)
T COG1352 230 SLKPGGLLFLG 240 (268)
T ss_pred HhCCCCEEEEc
Confidence 99999999875
No 174
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.75 E-value=1.4e-07 Score=79.37 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ 105 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~ 105 (258)
+..+|||||+++|-.+..++.. ..++++.+|++++..+.|++.+...+...+++++.+|+.+ ..+.+.. ..++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HHHHHHhccccCCc
Confidence 4579999999999888877665 2459999999999999999999888766689999998743 1111111 1368
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
||+|.+-. ........+..+.++|+|||++++.
T Consensus 157 fD~iFiDa-------dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDA-------DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecC-------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99997654 2556778889999999999999876
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.74 E-value=6.2e-08 Score=82.47 Aligned_cols=75 Identities=15% Similarity=0.033 Sum_probs=61.3
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||||||+|.++..++..+ .+++|+|+++.+++.++++.... .++.++++|+...++ ..||.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~--------~~~d~ 94 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL--------PEFNK 94 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc--------hhceE
Confidence 4578899999999999999998875 48999999999999999887542 278999999876544 24799
Q ss_pred EEecccc
Q 025059 109 VCCFQHL 115 (258)
Q Consensus 109 V~~~~~l 115 (258)
|+++...
T Consensus 95 Vv~NlPy 101 (258)
T PRK14896 95 VVSNLPY 101 (258)
T ss_pred EEEcCCc
Confidence 9886543
No 176
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.74 E-value=4.7e-08 Score=81.56 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=70.5
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
..++||||+|.|..+..++. .+.+|+++++|+.|....++ . ..+.+ |..+ . .+.+.+||+|+|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~----k----g~~vl--~~~~--w----~~~~~~fDvIsc 157 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSK----K----GFTVL--DIDD--W----QQTDFKFDVISC 157 (265)
T ss_pred CCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHh----C----CCeEE--ehhh--h----hccCCceEEEee
Confidence 46799999999999998855 55689999999999554443 3 22332 3222 1 113568999999
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
...+.- -.....+|+.|++.|+|+|.+++...
T Consensus 158 LNvLDR----c~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 158 LNVLDR----CDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred hhhhhc----cCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 987654 34578899999999999999998843
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.73 E-value=1.8e-07 Score=81.53 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHH---hcC--CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEE-
Q 025059 16 LYEFAKTALIKI---YSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE- 87 (258)
Q Consensus 16 ~~~~~k~~li~~---~~~--~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~- 87 (258)
+..|+...|... ..+ ++.+|||||||+|.....++.. ...+++|+|+++.+++.|++....+ ++..++.+.+
T Consensus 94 Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~ 173 (321)
T PRK11727 94 YIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQ 173 (321)
T ss_pred HHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEc
Confidence 346666665432 222 4589999999999776666544 3458999999999999999999887 5655677754
Q ss_pred cCCCCCchhhhhhhcCCceeEEEecccccc
Q 025059 88 ADPCAENFETQMQEKANQADLVCCFQHLQM 117 (258)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~ 117 (258)
.|... +...+..+.+.||+|+|+--.+-
T Consensus 174 ~~~~~--i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 174 KDSKA--IFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred cchhh--hhhcccccCCceEEEEeCCCCcC
Confidence 33221 11111113578999999876553
No 178
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.72 E-value=2.1e-07 Score=79.03 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=56.0
Q ss_pred HHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (258)
Q Consensus 21 k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 95 (258)
...+++.. ..++.+|||+|||+|.++..++.... .++++|+++.+++.++++.... .++.++++|+...++
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCCh
Confidence 33444433 34778999999999999999988765 7999999999999998877432 278999999977554
No 179
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.72 E-value=8e-08 Score=79.96 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCcee-EEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||||.++..++..+..+++|+|+++.|+... +.... ++ .+...|+.....+...+ .-..+|++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~~---~v~~~~~~ni~~~~~~~~~~-d~~~~Dvs 147 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQDE---RVKVLERTNIRYVTPADIFP-DFATFDVS 147 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcCC---CeeEeecCCcccCCHhHcCC-CceeeeEE
Confidence 6789999999999999999988777999999999888762 21111 22 23444554322211110 12367766
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+++. ...+..+.++|+| |.+++.
T Consensus 148 fiS~------------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 148 FISL------------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred Eeeh------------HhHHHHHHHHhCc-CeEEEE
Confidence 5433 2358889999999 777665
No 180
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.71 E-value=1.6e-07 Score=80.64 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
.+..|||+|||+|.++...+..+..+|++++.| +|.++|++..+.+....++..+.+.+.+..+ +++.|+|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence 578999999999998888888888899999965 7889999988888777789999999877665 57899987
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+- .+.+++.++..++..+- .++.|+|.|..+=+
T Consensus 249 SE-PMG~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 249 SE-PMGYMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred ec-cchhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 64 46667777777776665 45999999998755
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.71 E-value=2.1e-07 Score=72.36 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.+.-|||+|.|||-++.+++.++ ...++.++.|++.+....++++. +.++.+|+.+..-.... .+...||.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e-~~gq~~D~ 120 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGE-HKGQFFDS 120 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhh-cCCCeeee
Confidence 57799999999999999999885 45899999999999999888864 46899998764411111 15678999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|+|..-+.. -+.....++++.+...|.+||.++-.+..
T Consensus 121 viS~lPll~--~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 121 VISGLPLLN--FPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EEecccccc--CcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 999766554 45667789999999999999999876443
No 182
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.70 E-value=1.2e-07 Score=86.53 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.++.+|||+|||+|.++..++... .+++|+|+++.+++.|++++..++.. +++++++|+.+. + ..+.....+||+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~-l-~~~~~~~~~~D~v 366 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETV-L-PKQPWAGQIPDVL 366 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHH-H-HHHHhcCCCCCEE
Confidence 466899999999999999987764 48999999999999999998776543 789999997431 1 1111124579999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
++.-.-.. -...+++.+.+ ++|+++++++
T Consensus 367 i~dPPr~G------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 367 LLDPPRKG------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EECcCCCC------CCHHHHHHHHh-cCCCEEEEEc
Confidence 76432110 02344554443 7898877665
No 183
>PRK04148 hypothetical protein; Provisional
Probab=98.69 E-value=3.6e-07 Score=69.36 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCCc-cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~-~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|||+|||.|. .+..+.+.+. .|+++|+++.+++.++++ .+.+++.|+++.++. --..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~-----~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE-----IYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH-----HHhcCCEE
Confidence 45789999999996 6777776666 999999999999888765 467899999876653 24678999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.+.- ...++...+-++++.+. .-+++....+
T Consensus 82 ysir-------pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 82 YSIR-------PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred EEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 7643 45556666666666544 4455553333
No 184
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.66 E-value=3e-07 Score=82.78 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=107.9
Q ss_pred ccCCCCCcchHHhHHHHHH-HHHHHHhcCCCC-EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC
Q 025059 3 VLPIPRSELTHHRLYEFAK-TALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN 80 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~k-~~li~~~~~~~~-~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~ 80 (258)
+|+ +|...+..++-.|+. ...|..+..+-. ++|-+|||+-.+...+.+.++..++.+|+|+..++....+....+
T Consensus 19 rf~-~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-- 95 (482)
T KOG2352|consen 19 RFQ-PRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-- 95 (482)
T ss_pred hcc-ccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--
Confidence 455 455666667666653 456666777766 999999999999999988899999999999999999887775332
Q ss_pred ceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHH------HHHHHHHHHHhcccCCcEEEEEEc
Q 025059 81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE------RARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 81 ~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~------~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
....+...|+....+ ++++||+|+.-..++..+.... .....+.+++++|++||+++..+.
T Consensus 96 ~~~~~~~~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 96 PEMQMVEMDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cceEEEEecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 257889999988887 7899999999988887666554 345788999999999999876643
No 185
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.62 E-value=7.6e-08 Score=78.45 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=71.9
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
...++.+|||+.||-|.++..+++. ....|+++|++|.+++.+++..+.++....+..+++|+.... +...|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-------~~~~~ 170 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-------PEGKF 170 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-E
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------Ccccc
Confidence 3667999999999999999999873 445899999999999999999988877667889999975432 26799
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~ 142 (258)
|.|++...- ....++..+.+++++||++
T Consensus 171 drvim~lp~--------~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 171 DRVIMNLPE--------SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEE--TS--------SGGGGHHHHHHHEEEEEEE
T ss_pred CEEEECChH--------HHHHHHHHHHHHhcCCcEE
Confidence 999886521 1345778888899999875
No 186
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.61 E-value=4.1e-07 Score=81.51 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||++||+|.++..++..+ .+++|+|+++.+++.|+++.+..+.. ++.|.++|+.+.. .. ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~--~~---~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFA--TA---QMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHH--Hh---cCCCCCEEE
Confidence 46799999999999998888665 58999999999999999998877553 7899999974321 11 124699997
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+.-.-. .-...+++.+. .++|+++++++.
T Consensus 306 ~DPPr~------G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRR------GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCCCC------CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 753211 11233444443 378998888774
No 187
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.60 E-value=2.9e-07 Score=76.36 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
+....|.|+|||.+.++. .....|+.+|+-+. +-.++.+|+.+.|+ .+++.|++
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~----------------~~~V~~cDm~~vPl------~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV----------------NERVIACDMRNVPL------EDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeecC----------------CCceeeccccCCcC------ccCcccEE
Confidence 466889999999987655 22337999997311 33578899999888 78999999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
++..+|.. .++..++.++.|+|++||.+.+.-..
T Consensus 233 V~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 233 VFCLSLMG-----TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred EeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEehh
Confidence 87766543 35788999999999999999988443
No 188
>PLN02823 spermine synthase
Probab=98.57 E-value=9.4e-07 Score=77.74 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ 105 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (258)
+...+||.||+|.|..+..+++. +..+++.+|+++++++.|++.+.... ...+++++.+|+.. + +....++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~---L~~~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--E---LEKRDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--H---HhhCCCC
Confidence 34578999999999999888775 45689999999999999998875421 13378999999743 2 2224578
Q ss_pred eeEEEeccccccccCCH--HHHHHHHH-HHHhcccCCcEEEEEE
Q 025059 106 ADLVCCFQHLQMCFETE--ERARRLLQ-NVSSLLKPGGYFLGIT 146 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~--~~~~~~l~-~i~~~LkpgG~~i~~~ 146 (258)
||+|++-..-...-... --...+++ .+.+.|+|||++++..
T Consensus 177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99998753110000000 01346777 8999999999998763
No 189
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.52 E-value=4.7e-07 Score=81.12 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=79.2
Q ss_pred CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
+.+|||++||+|..+..++.. +...|+++|+++.+++.++++.+.++.. .+.+.+.|+.. + +. ..+.||+|.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~--~---l~-~~~~fD~V~ 130 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANA--L---LH-EERKFDVVD 130 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHH--H---Hh-hcCCCCEEE
Confidence 468999999999999988765 4458999999999999999998776543 45688888632 1 11 145799997
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~ 154 (258)
+.- . . ....++....+.+++||++.++.-|...+..
T Consensus 131 lDP-~----G---s~~~~l~~al~~~~~~gilyvSAtD~~~L~g 166 (382)
T PRK04338 131 IDP-F----G---SPAPFLDSAIRSVKRGGLLCVTATDTAPLCG 166 (382)
T ss_pred ECC-C----C---CcHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence 742 1 1 1235667766778999999999777655533
No 190
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.52 E-value=1.7e-06 Score=79.41 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.|+.+|||+|||.|+=+..++.. +.+.+++.|+++.-++..+++++..+.. ++.+...|..... .. ..+.||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~--~~---~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFG--AA---LPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhh--hh---chhhcC
Confidence 58899999999999998888775 3458999999999999999999876543 5777888865421 11 246799
Q ss_pred EEEe----ccc--cccc-----cCCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 108 LVCC----FQH--LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 108 ~V~~----~~~--l~~~-----~~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
.|++ +.. ++.- ..+. .-..++|.++.++|||||+++-+|+.
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9984 321 1110 0011 12378899999999999999888665
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.51 E-value=1.2e-06 Score=81.49 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+..+||||||.|.++..++.. +...++|+|++...+..|.++....++. ++.+++.|+.. +...+ +++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~--~~~~~--~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDL--ILNDL--PNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHH--HHHhc--CcccccEE
Confidence 4578999999999999999887 4458999999999999888887665543 67777776521 22222 56889999
Q ss_pred Eecccccccc----CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~----~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.+.|.=.|-- ...--...++..++++|+|||.+.+.+=+.
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 8887433200 001123689999999999999998775444
No 192
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.51 E-value=1.3e-06 Score=71.05 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHhcC-CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC
Q 025059 15 RLYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93 (258)
Q Consensus 15 ~~~~~~k~~li~~~~~-~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 93 (258)
-+..|++......... +..++||+||=+..+... ..+.-.|+.||+++. .-.+.+.|..+.
T Consensus 34 ~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------------~~~I~qqDFm~r 95 (219)
T PF11968_consen 34 WLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------------HPGILQQDFMER 95 (219)
T ss_pred HHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------CCCceeeccccC
Confidence 4557777665443322 347999999865543222 223336999998752 224566776655
Q ss_pred chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcE-----EEEEEcCch
Q 025059 94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDSS 150 (258)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~-----~i~~~~~~~ 150 (258)
++.. ...++||+|+++.++.| +.+......++..+.+.|+|+|. +++..|.+.
T Consensus 96 plp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 96 PLPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred CCCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 5411 14689999999999997 56688899999999999999999 888888764
No 193
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.49 E-value=9.3e-06 Score=68.99 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcC-----CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc--CCC---------
Q 025059 17 YEFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKN--------- 80 (258)
Q Consensus 17 ~~~~k~~li~~~~~-----~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~--------- 80 (258)
..++.+.|-..+-+ ...+||--|||.|+++..++..++ .+.|.|.|--|+-..+-.+... ...
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 35566565444431 347899999999999999999988 8999999999987654433210 000
Q ss_pred ----------------------------ceeEEEEcCCCCCchhhhhhhc--CCceeEEEeccccccccCCHHHHHHHHH
Q 025059 81 ----------------------------FIAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQ 130 (258)
Q Consensus 81 ----------------------------~~~~~~~~d~~~~~~~~~~~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 130 (258)
.++....+|..+ ..... .++||+|+..| ..++.+++-..++
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi~ 186 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCF----FIDTAENIIEYIE 186 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEE----EeechHHHHHHHH
Confidence 011222222111 11112 47999998776 5678899999999
Q ss_pred HHHhcccCCcEEE
Q 025059 131 NVSSLLKPGGYFL 143 (258)
Q Consensus 131 ~i~~~LkpgG~~i 143 (258)
.|.++|||||+.|
T Consensus 187 tI~~lLkpgG~WI 199 (270)
T PF07942_consen 187 TIEHLLKPGGYWI 199 (270)
T ss_pred HHHHHhccCCEEE
Confidence 9999999999664
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.47 E-value=9e-07 Score=77.32 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--------CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhh
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQE 101 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 101 (258)
++.+|||.+||+|+++..+... ....++|+|+++.++..|+.++.-.+... ...+.+.|....+...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~---- 121 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI---- 121 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence 5678999999999999887662 44589999999999999887764432211 2357888875543310
Q ss_pred cCCceeEEEeccccccc-c----------------CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 102 KANQADLVCCFQHLQMC-F----------------ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~-~----------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
...+||+|+++-..... + .....--.++..+.+.|++||.+.+.+|++
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 24789999986433211 0 001122358899999999999998888875
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=70.98 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=78.0
Q ss_pred HHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcC---------CCceeEEEEcCCCCC
Q 025059 26 KIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAE 93 (258)
Q Consensus 26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~d~~~~ 93 (258)
+..++||.+.||+|+|+|-++..++.. .....+|||.-++.++.+++++...- ...+..++.+|+...
T Consensus 77 ~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 445789999999999999988877643 22245999999999999999876432 122568889998654
Q ss_pred chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.- ...+||.|.|..+ .....+++...|++||.+++-
T Consensus 157 ~~------e~a~YDaIhvGAa----------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YA------EQAPYDAIHVGAA----------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CC------ccCCcceEEEccC----------ccccHHHHHHhhccCCeEEEe
Confidence 43 4689999988753 234566777889999998875
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.42 E-value=1.4e-06 Score=75.13 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.|+..+||++||.|+++..++... .++|+|+|.++.|++.|++++.. ..++.++++|..+. ...+.....++|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l--~~~l~~~~~~vD 92 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNL--KEVLAEGLGKVD 92 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHH--HHHHHcCCCccC
Confidence 478899999999999999999874 36999999999999999998865 22789999997653 222221112799
Q ss_pred EEEeccc
Q 025059 108 LVCCFQH 114 (258)
Q Consensus 108 ~V~~~~~ 114 (258)
.|++-.+
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9877543
No 197
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.42 E-value=3.9e-06 Score=74.95 Aligned_cols=105 Identities=10% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
+.+|||+.||+|..+..++.. +..+|+++|+++.+++.++++.+.++.. ++.+.+.|+... +.....+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~-----l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANV-----LRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHH-----HHHhCCCCCEE
Confidence 368999999999999999887 5679999999999999999999776543 577888886432 11124679999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
..-- .. ....++..+.+.+++||++.+|..|..
T Consensus 119 dlDP-fG-------s~~~fld~al~~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 119 DIDP-FG-------TPAPFVDSAIQASAERGLLLVTATDTS 151 (374)
T ss_pred EeCC-CC-------CcHHHHHHHHHhcccCCEEEEEecccH
Confidence 6632 11 123678888889999999999966553
No 198
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.41 E-value=2.6e-06 Score=73.99 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
-...+|+|.|.|..+..+.. .+.++-++++....+..++..+. . .++.+.+|+... . .+-|+|.+
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~--------P~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-T--------PKGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-C--------CCcCeEEE
Confidence 37899999999999999988 56689999999988888877764 2 477888888654 2 24569999
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..+|+ .+.++..++|+++...|+|||.+++.
T Consensus 243 kWiLhd--wtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 243 KWILHD--WTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred Eeeccc--CChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999998 68899999999999999999999887
No 199
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.41 E-value=4.8e-07 Score=72.77 Aligned_cols=107 Identities=19% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~ 104 (258)
++.+||||||++|+++..+.... ..+++|+|+.+.. .. ..+.++++|+.+...... +.....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------PL---QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S----TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------cc---cceeeeecccchhhHHHhhhhhcccccc
Confidence 34899999999999999998886 4699999998771 00 145666777654322212 211237
Q ss_pred ceeEEEeccccccc----cCC---HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 105 QADLVCCFQHLQMC----FET---EERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 105 ~fD~V~~~~~l~~~----~~~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.+|+|+|-.+.... .+. .+-....+.-+...|+|||.+++-....
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 99999987633211 111 2233445555667799999998876554
No 200
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=3.5e-07 Score=77.06 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
+.+..++|+|||+|..+. ..+...++|.|++...+.-|+..- ......+|+...++ .+.+||.+
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~------~~~s~d~~ 107 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPF------REESFDAA 107 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCC-------CceeehhhhhcCCC------CCCccccc
Confidence 358899999999995332 224457999999988887776442 12577889888777 68899999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
++..++|+ +.+......+++++.++|+|||..++..
T Consensus 108 lsiavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 108 LSIAVIHH-LSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999997 5668888999999999999999987773
No 201
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=5.5e-06 Score=65.43 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
...+||||||+|..+..++.. +...+.++|+++.+++...+....++. +++.+++|+.. .+ ..++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~-----~l--~~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLS-----GL--RNESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHh-----hh--ccCCccEE
Confidence 578999999999888877665 455799999999999998888877743 56778888643 22 23778877
Q ss_pred Eecccc---------------ccc--cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc---hHHHHHH
Q 025059 110 CCFQHL---------------QMC--FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY 156 (258)
Q Consensus 110 ~~~~~l---------------~~~--~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~---~~~~~~~ 156 (258)
+.+-.. .|+ -.+.+-.+.++..+-.+|.|.|++++..... ..+.+.+
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l 181 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL 181 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence 543210 111 2334557888999999999999999885544 3444433
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.38 E-value=4.8e-06 Score=71.40 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=81.4
Q ss_pred CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC--C-CceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.+||-||-|.|+.+..+++.. ..+++.+||++..++.|++.++... . ..++.++..|... -+.+...+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~-----~v~~~~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE-----FLRDCEEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH-----HHHhCCCcCCE
Confidence 599999999999999999884 6799999999999999999886542 1 2478888888632 22223458999
Q ss_pred EEeccccccccCCHH--HHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 109 VCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 109 V~~~~~l~~~~~~~~--~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|++-..=. . ...+ --..+++.+.++|+++|+++...-+
T Consensus 153 Ii~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 153 IIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 98754211 0 0001 1378999999999999999988333
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.37 E-value=2.2e-06 Score=71.78 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=64.5
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..|++.|||+|.|||.++.+++..+. .|+++++++.|+.+..+|..+.....+.+++++|....++ ..||+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~ 126 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG 126 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence 45889999999999999999988877 9999999999999999999887655578999999876543 47888
Q ss_pred EEec
Q 025059 109 VCCF 112 (258)
Q Consensus 109 V~~~ 112 (258)
++++
T Consensus 127 cVsN 130 (315)
T KOG0820|consen 127 CVSN 130 (315)
T ss_pred eecc
Confidence 8774
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.37 E-value=6.5e-06 Score=69.54 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=78.2
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
.+...+||=||-|.|+.+..+.+.. ..+++.+|+++.+++.|++.+.... ...+++++..|... + +.....
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~---l~~~~~ 148 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--F---LKETQE 148 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--H---HHTSSS
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--H---HHhccC
Confidence 3457899999999999999988775 5699999999999999998765421 12378999999632 2 222334
Q ss_pred -ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 105 -QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 105 -~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+||+|++-..-.......--...+++.+.++|+|||+++....
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8999987332110000001136789999999999999998853
No 205
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.36 E-value=2.3e-07 Score=83.89 Aligned_cols=100 Identities=23% Similarity=0.211 Sum_probs=67.2
Q ss_pred CEEEEEcCCCCccHHHHHHcCCCeEEEE---ecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 33 VTVCDLYCGAGVDVDKWETALIANYIGI---DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
..+||+|||.|.++..+...+. ..+.+ |..+..++.|.+|-- .+.+-.......++ +++.||+|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGv------pa~~~~~~s~rLPf------p~~~fDmv 185 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGV------PAMIGVLGSQRLPF------PSNAFDMV 185 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCc------chhhhhhccccccC------Cccchhhh
Confidence 4699999999999999988766 22222 444455666655521 11221221234555 78999999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
.|+.++.. . .+.-..+|-++.|+|+|||+|+.+.|.
T Consensus 186 Hcsrc~i~--W-~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 186 HCSRCLIP--W-HPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hccccccc--c-hhcccceeehhhhhhccCceEEecCCc
Confidence 99887653 1 122246888999999999999999664
No 206
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.36 E-value=2.8e-06 Score=74.34 Aligned_cols=107 Identities=17% Similarity=0.062 Sum_probs=86.8
Q ss_pred HhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
....+|.+|||+=+|-|.++..++..+...|+++|++|.+++..++++..++....+..+++|+..... ..+.+
T Consensus 184 ~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~~a 257 (341)
T COG2520 184 ELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELGVA 257 (341)
T ss_pred hhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------ccccC
Confidence 344569999999999999999999987767999999999999999999988776678999999866443 23789
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|.|++... .....++....+.+++||++-.-..
T Consensus 258 DrIim~~p--------~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 258 DRIIMGLP--------KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred CEEEeCCC--------CcchhhHHHHHHHhhcCcEEEEEec
Confidence 99988652 2345677778888899999876633
No 207
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.36 E-value=7.5e-07 Score=78.92 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=93.0
Q ss_pred HHHHHH---HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc
Q 025059 18 EFAKTA---LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94 (258)
Q Consensus 18 ~~~k~~---li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (258)
.|.+.. .+..-+.|+..++|+|||-|+............++|+|.++..+..+...........+..++.+|+.+.+
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~ 173 (364)
T KOG1269|consen 94 FWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP 173 (364)
T ss_pred HHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC
Confidence 355533 33444567889999999999999988888777999999999998887776655433335566888887777
Q ss_pred hhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+ .++.||.|.+..+..| .++....++++.++++|||.++.-
T Consensus 174 f------edn~fd~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 174 F------EDNTFDGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred C------CccccCcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence 7 6899999988886655 667889999999999999999765
No 208
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=6.1e-06 Score=67.03 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=79.1
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
+.++..|+|||+..|++++.+++... ..|+|+|+.|-. .. ..+.++++|+...+..+.+.. ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~~---~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------PI---PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------cC---CCceEEeeeccCccHHHHHHHHcCCC
Confidence 45889999999999999998887732 359999997543 11 158999999988765443322 344
Q ss_pred ceeEEEeccccc----cc---cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc---hHHHHHHHH
Q 025059 105 QADLVCCFQHLQ----MC---FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK 158 (258)
Q Consensus 105 ~fD~V~~~~~l~----~~---~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~---~~~~~~~~~ 158 (258)
.+|+|++-.+-. .. .....-...++.-+..+|+|||.|++-...+ +.+...+++
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 579998755431 10 1112334566777778999999999885554 344444443
No 209
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.34 E-value=9.6e-06 Score=61.71 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=69.7
Q ss_pred EEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC--CchhhhhhhcC-CceeEE
Q 025059 35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV 109 (258)
Q Consensus 35 VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~fD~V 109 (258)
++|+|||+|... .+..... ..++|+|+++.++..++..... .....+.+...|... .++ .. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence 999999999855 2222222 3799999999999986555432 111015778787654 343 33 489999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+.....+... ....+.++.+.++|+|.+++.....
T Consensus 124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5544433222 6789999999999999999886654
No 210
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.33 E-value=2.4e-05 Score=62.70 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
.+.++||+-+|+|.+....+.++...++.+|.+..++...+++.+..+...++.++..|+. .+.+... ..++||+|.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~-~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLG-TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcC-CCCcccEEE
Confidence 5899999999999999999999999999999999999999999887765558888999875 2211111 123599997
Q ss_pred eccccccccCCHHHHHHHHHH--HHhcccCCcEEEEEEcCc
Q 025059 111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~--i~~~LkpgG~~i~~~~~~ 149 (258)
.--..+. . .-+....+.. -...|+|+|.+++.....
T Consensus 120 lDPPy~~--~-l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LDPPYAK--G-LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eCCCCcc--c-hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 6443331 1 2212223333 557899999999885543
No 211
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.33 E-value=7.8e-06 Score=72.99 Aligned_cols=103 Identities=9% Similarity=0.058 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc---------
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--------- 102 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------- 102 (258)
+.+|||++||+|.++..+++. ..+++|+|+++.+++.|+++...++.. ++.++++|+.+. .+.+...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~--l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEF--TQAMNGVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHH--HHHHhhcccccccccc
Confidence 357999999999999977665 459999999999999999998776543 789999998441 1111100
Q ss_pred ---CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 103 ---ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 103 ---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
..+||+|+.--. +. .-...+++.+.+ |++++++++.
T Consensus 283 ~~~~~~~D~v~lDPP-R~-----G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 283 DLKSYNFSTIFVDPP-RA-----GLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cccCCCCCEEEECCC-CC-----CCcHHHHHHHHc---cCCEEEEEeC
Confidence 125899976432 11 012344444443 6777776633
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=1.3e-05 Score=65.66 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (258)
...++||||.=||-.+..++.. ..++|+++|+++...+.+.+..+..+...+++++++++.+ .+.+.+++ ..++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-sLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-SLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-hHHHHHhcCCCCcee
Confidence 3579999999999888888776 3469999999999999998877766655589999998754 23322222 468999
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.|..-. ..........++.+++|+||++++.
T Consensus 152 faFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence 996543 2445668999999999999999887
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.29 E-value=1.7e-05 Score=76.71 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHh-c-CCCCEEEEEcCCCCccHHHHHHc------------------------------------------
Q 025059 17 YEFAKTALIKIY-S-HPYVTVCDLYCGAGVDVDKWETA------------------------------------------ 52 (258)
Q Consensus 17 ~~~~k~~li~~~-~-~~~~~VLDlGcG~G~~~~~~~~~------------------------------------------ 52 (258)
+.-+...++... . .++..++|.+||+|.++...+..
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 334444444443 3 46789999999999998776541
Q ss_pred -CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHH
Q 025059 53 -LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131 (258)
Q Consensus 53 -~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 131 (258)
...+++|+|+++.+++.|+.++...+....+.+.++|+.+.+.. ...++||+|+++--...-.....+...+...
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~----~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~ 329 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP----LPKGPTGLVISNPPYGERLGEEPALIALYSQ 329 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc----cccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence 01269999999999999999998887655689999998764431 0235799999985433222333444444444
Q ss_pred HHhcc---cCCcEEEEEEcCch
Q 025059 132 VSSLL---KPGGYFLGITPDSS 150 (258)
Q Consensus 132 i~~~L---kpgG~~i~~~~~~~ 150 (258)
+.+.+ .+|+.+.+.+++..
T Consensus 330 lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 330 LGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHhCCCCeEEEEeCCHH
Confidence 44444 48988888777653
No 214
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.28 E-value=1.9e-06 Score=67.82 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=53.0
Q ss_pred EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 025059 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~ 112 (258)
.|+|+.||-|+++..+++... +|+++|+++..++.|+.+.+-.+...+++++++|..+. ..... ....+|+|.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~--~~~~~-~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL--LKRLK-SNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH--GGGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH--Hhhcc-ccccccEEEEC
Confidence 699999999999999988754 89999999999999999998776656899999997542 11111 11128999874
No 215
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.28 E-value=8.1e-06 Score=72.62 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=49.5
Q ss_pred CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (258)
.+|||++||+|.++..+++.. ..++|+|+++.|++.|+++...++.. ++.++++|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence 479999999999999777654 59999999999999999998877543 68999999843
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.28 E-value=1.2e-05 Score=65.84 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHh-------cC-CCceeEEEEcCC
Q 025059 20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEADP 90 (258)
Q Consensus 20 ~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~-------~~-~~~~~~~~~~d~ 90 (258)
+..++-..-+.++...+|||||.|..+...+.. +..+.+||++.+...+.|+...+. .+ ...++.+.++|+
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 333333333568899999999999887766544 666799999999988777653321 11 123678899998
Q ss_pred CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+.+....+ -...|+|.++... | .+++...+.++...||+|..+|-+
T Consensus 111 l~~~~~~~~---~s~AdvVf~Nn~~---F--~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 111 LDPDFVKDI---WSDADVVFVNNTC---F--DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTHHHHHHH---GHC-SEEEE--TT---T---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccHhHhhh---hcCCCEEEEeccc---c--CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 765432221 1357999887632 2 345666778888899999887654
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.26 E-value=8.5e-06 Score=76.32 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC---------CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (258)
...+|||.|||+|.++..+.... ...++|+|+++.++..|+.++.... .....+.+.|.....+.. ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence 34689999999999998886541 1378999999999999998876553 123445555532211100 001
Q ss_pred cCCceeEEEecc
Q 025059 102 KANQADLVCCFQ 113 (258)
Q Consensus 102 ~~~~fD~V~~~~ 113 (258)
..+.||+|+++-
T Consensus 109 ~~~~fD~IIgNP 120 (524)
T TIGR02987 109 YLDLFDIVITNP 120 (524)
T ss_pred ccCcccEEEeCC
Confidence 236899998864
No 218
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.23 E-value=1.5e-06 Score=71.16 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-CCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-KNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+.+|||.|.|-|-.+...+..+..+|+-++.+++.++.|+-+.=+.+ ....++++.+|+.+ +-+.+ .+.+||+|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~--~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDF--DDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcC--CccccceE
Confidence 589999999999999999999888899999999999998865421111 12257889999743 22222 57889999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
+-- ..+++.-+.--..++-.++.|+|+|||.++=
T Consensus 210 iHD-PPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 210 IHD-PPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred eeC-CCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 542 1222223334467899999999999999864
No 219
>PRK00536 speE spermidine synthase; Provisional
Probab=98.20 E-value=2.6e-05 Score=66.23 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+...+||=||.|.|+.++.+++.+. +++-+||++++++.+++.++... .+.+++++.. +. ....++|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------~~---~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------LL---DLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------hh---hccCCcC
Confidence 3568999999999999999999874 99999999999999999665421 1225555431 10 0024789
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|+|++-.. . -..+.+.+.++|+|||+++...-
T Consensus 141 DVIIvDs~-----~----~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 141 DLIICLQE-----P----DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CEEEEcCC-----C----ChHHHHHHHHhcCCCcEEEECCC
Confidence 99987531 1 24677899999999999998743
No 220
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=3.2e-05 Score=61.43 Aligned_cols=109 Identities=18% Similarity=0.064 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc-CCCCCchhhhhh--hcCC
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQ--EKAN 104 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~--~~~~ 104 (258)
.|+.+|||+||..|.+++-..+. +.+.+.|+|+-.- .+.. .+.++++ |+.+......+. .++.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~----Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPE----GATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCC----CcccccccccCCHHHHHHHHHhCCCC
Confidence 48899999999999998766554 5578999998421 1112 4566666 776654332221 1678
Q ss_pred ceeEEEeccccccc----cCC---HHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 105 QADLVCCFQHLQMC----FET---EERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 105 ~fD~V~~~~~l~~~----~~~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
..|+|++-++-.-. .++ .+--..++--....++|+|.|++-+-++.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 99999886533211 111 11123344555677889999999987774
No 221
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.1e-05 Score=67.93 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=61.2
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.+|||||+|.|.++..+++.+. +|+++++++.+++..+++..... +++++++|+...++.+. ..++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~---n~~vi~~DaLk~d~~~l-----~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD---NLTVINGDALKFDFPSL-----AQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc---ceEEEeCchhcCcchhh-----cCCCE
Confidence 45789999999999999999988877 79999999999999999876322 78999999987666210 15677
Q ss_pred EEecc
Q 025059 109 VCCFQ 113 (258)
Q Consensus 109 V~~~~ 113 (258)
|+++-
T Consensus 99 vVaNl 103 (259)
T COG0030 99 VVANL 103 (259)
T ss_pred EEEcC
Confidence 76643
No 222
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.16 E-value=2.4e-05 Score=63.04 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCCC-EEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059 21 KTALIKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (258)
Q Consensus 21 k~~li~~~~~~~~-~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (258)
-+..+..+++... +++|+|+|.|-=...++-. +..+++.+|....-+...+.-....++. +++.++..+.+ ..
T Consensus 37 DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~--- 111 (184)
T PF02527_consen 37 DSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE--- 111 (184)
T ss_dssp HHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT---
T ss_pred HHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc---
Confidence 3444444555444 8999999999655555444 4458999999998888777766666554 68899888754 11
Q ss_pred hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
...+||+|++-..- .+..++.-+...+++||.+++..
T Consensus 112 ---~~~~fd~v~aRAv~--------~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 112 ---YRESFDVVTARAVA--------PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ---TTT-EEEEEEESSS--------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---cCCCccEEEeehhc--------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 47899999886532 26678888999999999998873
No 223
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.8e-05 Score=66.37 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=84.2
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (258)
-+.||.+|||-|+|+|.++..+++. +.++++-+|+-+.-.+.|.+-++..+.+..+++.+-|++...+.. +...
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~ 177 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLK 177 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----cccc
Confidence 3569999999999999999999886 557999999999889999999999888889999999998866521 4678
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|.|..- .+....++..+..+||.+|.-++.
T Consensus 178 aDaVFLD---------lPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 178 ADAVFLD---------LPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEc---------CCChhhhhhhhHHHhhhcCceEEe
Confidence 9999442 233456677777789988854444
No 224
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.08 E-value=9.1e-05 Score=65.54 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=88.3
Q ss_pred HhcCCCCEEEEEcCCCCccHHHHHHcCC---------------------------------C-------eEEEEecChhH
Q 025059 27 IYSHPYVTVCDLYCGAGVDVDKWETALI---------------------------------A-------NYIGIDVATSG 66 (258)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~---------------------------------~-------~v~gvD~s~~~ 66 (258)
.-..++..++|.-||+|.++...+.... . .++|+|+++.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 3455777899999999999887765421 1 37899999999
Q ss_pred HHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCH---H-HHHHHHHHHHhcccCCcEE
Q 025059 67 IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYF 142 (258)
Q Consensus 67 l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~---~-~~~~~l~~i~~~LkpgG~~ 142 (258)
++.|+.+....+....+.|.++|+....- +.+.+|+|+|+-.-.--+.+. . -...+.+.+++.++-.+.+
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 99999999988887789999999976442 226899999974322111222 2 3456667788889999999
Q ss_pred EEEEcCchHHH
Q 025059 143 LGITPDSSTIW 153 (258)
Q Consensus 143 i~~~~~~~~~~ 153 (258)
++++.......
T Consensus 341 v~tt~e~~~~~ 351 (381)
T COG0116 341 VFTTSEDLLFC 351 (381)
T ss_pred EEEccHHHHHH
Confidence 98866554333
No 225
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.07 E-value=8.9e-05 Score=57.17 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCCCccHHHHHH-----cCCCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhc
Q 025059 30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK 102 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~ 102 (258)
.+...|+|+|||.|.++..++. ....+++|+|.++..++.+.++.+... ...+..+...++.+.. .
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence 4678999999999999999888 545599999999999999988877654 2224555555543221 1
Q ss_pred CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
....++++..++... . ...+++...+ ++-.+++..|-+.
T Consensus 97 ~~~~~~~vgLHaCG~----L--s~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 97 SDPPDILVGLHACGD----L--SDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred cCCCeEEEEeecccc----h--HHHHHHHHHH---cCCCEEEEcCCcc
Confidence 455666664443322 2 2334444433 6666676666653
No 226
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.07 E-value=3.3e-05 Score=66.31 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.+.+|||+|||+|.-+..+... ...+++++|.|+.|++.++............... .+...... +....|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~------~~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFL------PFPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccc------cCCCCcE
Confidence 3478999999999655444332 3458999999999999998876543211011111 11100000 2233499
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHHhH
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~~~ 160 (258)
|++.++|.-+ .+ .....+++++-+.+.+ ++++. +|.+.......++.+
T Consensus 106 vi~s~~L~EL-~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 106 VIASYVLNEL-PS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL 156 (274)
T ss_pred EEEehhhhcC-Cc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence 9999999864 33 6778888888887766 77777 444445555555543
No 227
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.99 E-value=0.0001 Score=60.43 Aligned_cols=110 Identities=11% Similarity=0.023 Sum_probs=76.0
Q ss_pred EEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059 35 VCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 35 VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
|.||||-.|.+...+...+. .+++++|+++..++.|++.....++..++++..+|... .+. +.+..|+|++..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~-----~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLK-----PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G-------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccC-----CCCCCCEEEEec
Confidence 68999999999999988865 47999999999999999999988777789999999633 121 223378887765
Q ss_pred ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (258)
Q Consensus 114 ~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~ 156 (258)
+ +-.....++++....++....||+.-.+.....+++
T Consensus 75 M------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~ 111 (205)
T PF04816_consen 75 M------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRW 111 (205)
T ss_dssp E-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHH
T ss_pred C------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHH
Confidence 3 244577888888888877777887755554444433
No 228
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.98 E-value=6.7e-05 Score=63.44 Aligned_cols=110 Identities=16% Similarity=0.198 Sum_probs=70.3
Q ss_pred CEEEEEcCC--CCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCCce
Q 025059 33 VTVCDLYCG--AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (258)
Q Consensus 33 ~~VLDlGcG--~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f 106 (258)
...|||||| |-++...+++. +.++|+-+|.++..+..++..+.....+ ...++++|+.+.. ..+. .-.+-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g-~t~~v~aD~r~p~--~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRG-RTAYVQADLRDPE--AILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTS-EEEEEE--TT-HH--HHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCc-cEEEEeCCCCCHH--HHhcCHHHHhcC
Confidence 459999999 45677777664 5679999999999999999988776422 5899999997632 1111 011223
Q ss_pred e-----EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D-----~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
| .|++...+|++ ...++...++..+...|.||.+++++-
T Consensus 147 D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp -TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 3 35666678874 555678999999999999999999993
No 229
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.00028 Score=62.87 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=84.7
Q ss_pred HHHHHHhcC--CCCEEEEEcCCCCccHHHHHHcC---CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059 22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 22 ~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (258)
|.+....+. ||.+|||+|++.|+=+..++... ...|+++|+++.-+...+++++..+.. ++...+.|....+-
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~- 222 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAE- 222 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccc-
Confidence 445444443 88999999999999888887763 235699999999999999998877654 36677777643221
Q ss_pred hhhhhcCCceeEEEecc------ccc------cccCC------HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 97 TQMQEKANQADLVCCFQ------HLQ------MCFET------EERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~~------~l~------~~~~~------~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
... ..++||.|++-. +++ +.... ..-..++|.+..++|||||.++-++++-
T Consensus 223 -~~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 223 -LLP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred -ccc-ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 000 123699997632 121 10110 1234788999999999999999886653
No 230
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=5.8e-05 Score=68.68 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
++.+|||+=||.|.++..++.. ..+|+|+|+++.+++.|+++.+.++.. ++.|..+++.+... ... ....+|+|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~--~~~-~~~~~d~Vv 367 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTP--AWW-EGYKPDVVV 367 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhh--hcc-ccCCCCEEE
Confidence 6689999999999999999754 459999999999999999999888765 59999999755322 110 235889997
Q ss_pred eccccccccCCHHHHH-HHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059 111 CFQHLQMCFETEERAR-RLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~-~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~ 156 (258)
.-- +...+. .+++.+. .++|-.+++++ +|...+.+.+
T Consensus 368 vDP-------PR~G~~~~~lk~l~-~~~p~~IvYVS-CNP~TlaRDl 405 (432)
T COG2265 368 VDP-------PRAGADREVLKQLA-KLKPKRIVYVS-CNPATLARDL 405 (432)
T ss_pred ECC-------CCCCCCHHHHHHHH-hcCCCcEEEEe-CCHHHHHHHH
Confidence 643 122233 4444444 45777777776 4444444333
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.92 E-value=0.00022 Score=58.51 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=74.7
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+.+|.+||-||.++|.....+++- + .+.|++++.|+.+....-.-.+... ++--+..|+....-...+ -+..
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P~~Y~~l---v~~V 144 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHPEKYRML---VEMV 144 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSGGGGTTT---S--E
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCChHHhhcc---cccc
Confidence 348999999999999999988775 3 5689999999977665544333332 677788888764432222 3589
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+|.+--+. ..+.+-++.|+...||+||.+++.+
T Consensus 145 DvI~~DVaQ------p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVAQ------PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-SS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCCC------hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999775432 4567889999999999999999883
No 232
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.86 E-value=0.00067 Score=57.88 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=62.7
Q ss_pred HHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059 20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (258)
Q Consensus 20 ~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (258)
+...+++.. ..++..|||+|+|+|.++..++..+ .+++++|+++.+++..++++.... +++++.+|+........
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~---~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP---NVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS---SEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc---cceeeecchhccccHHh
Confidence 333344433 3478999999999999999998888 699999999999999998876332 89999999987655221
Q ss_pred hhhcCCceeEEEec
Q 025059 99 MQEKANQADLVCCF 112 (258)
Q Consensus 99 ~~~~~~~fD~V~~~ 112 (258)
+ .+....|+++
T Consensus 94 ~---~~~~~~vv~N 104 (262)
T PF00398_consen 94 L---KNQPLLVVGN 104 (262)
T ss_dssp C---SSSEEEEEEE
T ss_pred h---cCCceEEEEE
Confidence 1 2344555554
No 233
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.85 E-value=0.00012 Score=55.89 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=59.5
Q ss_pred eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccc-------cCCHHHHHHH
Q 025059 56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRL 128 (258)
Q Consensus 56 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------~~~~~~~~~~ 128 (258)
+|+|+||.+++++.++++++......++.+++.+-.+ +...+ +.++.|+|+- .+.|. ....+....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i--~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYI--PEGPVDAAIF--NLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEE--EESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhC--ccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHH
Confidence 5899999999999999999987665579999887543 33333 2358999854 44443 2334567889
Q ss_pred HHHHHhcccCCcEEEEEEcC
Q 025059 129 LQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 129 l~~i~~~LkpgG~~i~~~~~ 148 (258)
++.+.++|+|||.+++..-.
T Consensus 75 l~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHhhccCCEEEEEEeC
Confidence 99999999999999988544
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.85 E-value=0.00028 Score=60.29 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCCccHHHHHHc--C-CCeEEEEecChhHHHHHHHHHH-hcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 32 YVTVCDLYCGAGVDVDKWETA--L-IANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~--~-~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
+.+|+=||||.=.++.-+... + ...++++|+++++++.+++-.. ..+++.++.|+++|+.+... .-..||
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~D 194 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYD 194 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----S
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCC
Confidence 359999999987666555543 2 3479999999999999988766 23334489999999865432 236899
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+|+...-.. .+.+....++.++.+.++||..++.-..++
T Consensus 195 vV~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 195 VVFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp EEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EEEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 997665222 245568899999999999999998875554
No 235
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00013 Score=60.32 Aligned_cols=99 Identities=16% Similarity=0.069 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCce-eEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++..+||+|+.||+++..++..+..+|+++|.....+..- ++... + +.+...|+....... -.+..|++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d~---rV~~~E~tN~r~l~~~~----~~~~~d~~ 148 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRNDP---RVIVLERTNVRYLTPED----FTEKPDLI 148 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcCC---cEEEEecCChhhCCHHH----cccCCCeE
Confidence 7899999999999999999999999999999998776643 22221 3 344555554322211 13477899
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+|--++. .+..+|..+..+++|+|.++..+
T Consensus 149 v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 149 VIDVSFI-------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence 8865433 37889999999999999988763
No 236
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.83 E-value=0.00014 Score=64.72 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=44.7
Q ss_pred CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCC
Q 025059 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC 91 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~ 91 (258)
.+|||+-||.|.++..++... .+|+|+|+++.+++.|++.+..++.. +++|+.+++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~ 254 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAE 254 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SH
T ss_pred CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeecc
Confidence 389999999999999996654 49999999999999999999887654 7899988763
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=0.00018 Score=57.71 Aligned_cols=118 Identities=19% Similarity=0.113 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcC------CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 17 YEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 17 ~~~~k~~li~~~~~------~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
+-|.--+.+.+++. .+.+|||+|+|+|--+...+..+...++..|+.+..+...+-+.+.++ ..+.+...|+
T Consensus 59 ~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~ 136 (218)
T COG3897 59 FAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADL 136 (218)
T ss_pred HHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccc
Confidence 45555555555542 579999999999988888888888899999999888777766666664 3788888887
Q ss_pred CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEE-EEcCch
Q 025059 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG-ITPDSS 150 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~-~~~~~~ 150 (258)
.. .+..||+|+..-.+. +......++. ....|+..|..++ -.|...
T Consensus 137 ~g---------~~~~~Dl~LagDlfy----~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 137 IG---------SPPAFDLLLAGDLFY----NHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cC---------CCcceeEEEeeceec----CchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 44 357899998876433 4555667777 5555555555444 355443
No 238
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.00047 Score=59.15 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHH--hcCCCcee-EEEEcCCCCCc--------------
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE--NQRKNFIA-EFFEADPCAEN-------------- 94 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~-~~~~~d~~~~~-------------- 94 (258)
..+||--|||.|+++..++..++ ..-|-+.|--|+-...=.+. .....+.+ .|++.-.....
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 46899999999999999999887 67777888877654332221 11000011 12222111100
Q ss_pred -----------------hhhhhh--hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 95 -----------------FETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 95 -----------------~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
|.+... ...+.||+|+..| ..++..+.-..+..|.++|+|||+.+=
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf----FIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF----FIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEE----EeechHHHHHHHHHHHHhccCCcEEEe
Confidence 000000 1235799987665 456788899999999999999998863
No 239
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.73 E-value=3.3e-05 Score=62.86 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
...|+|..||-|+....++..+. .|+++|+++.-|.-|+.+++-.+...+++|+++|+.+ +...++-....+|+|..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld--~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD--LASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH--HHHHHhhhhheeeeeec
Confidence 46799999999999999988776 8999999999999999999887766699999999854 22233222334667755
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCC
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPG 139 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~Lkpg 139 (258)
+-.. ...+.+..-+-.+...+.|.
T Consensus 172 sppw----ggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 172 SPPW----GGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred CCCC----CCcchhhhhhhhhhhhcchh
Confidence 4422 22344444444555555554
No 240
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=0.00041 Score=57.06 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=73.6
Q ss_pred HHHhcCC-CCEEEEEcCCCCccHHHHH-HcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059 25 IKIYSHP-YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (258)
Q Consensus 25 i~~~~~~-~~~VLDlGcG~G~~~~~~~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 102 (258)
+..+.+. +.+++|||+|.|-=...++ ..+..+++-+|....-+...+.-....++. ++.++++.+.+.. +
T Consensus 60 ~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~-------~ 131 (215)
T COG0357 60 LLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFG-------Q 131 (215)
T ss_pred hhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcc-------c
Confidence 3334444 5899999999996555554 234447999999988877776666555442 5889988875532 1
Q ss_pred CCc-eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 103 ANQ-ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 103 ~~~-fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
... ||+|++-. ...+..++.-+...+++||.+++.
T Consensus 132 ~~~~~D~vtsRA--------va~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 132 EKKQYDVVTSRA--------VASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ccccCcEEEeeh--------ccchHHHHHHHHHhcccCCcchhh
Confidence 223 99998764 333677888899999999987644
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.69 E-value=0.00032 Score=60.56 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++..|||+|+|.|+=+..++.. ..+.+++.|+++.-+...+.+....+.. .+.....|..... ... ....||
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~--~~~--~~~~fd 158 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLD--PKK--PESKFD 158 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHH--HHH--HTTTEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccc--ccc--cccccc
Confidence 37899999999999988877766 3569999999999999999988776543 4555656643321 111 244699
Q ss_pred EEEecc------cccc------cc--CCH----HHHHHHHHHHHhcc----cCCcEEEEEEcC
Q 025059 108 LVCCFQ------HLQM------CF--ETE----ERARRLLQNVSSLL----KPGGYFLGITPD 148 (258)
Q Consensus 108 ~V~~~~------~l~~------~~--~~~----~~~~~~l~~i~~~L----kpgG~~i~~~~~ 148 (258)
.|.+-. .+.. .. ... .-..++|.++.+.+ +|||+++-++.+
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 997632 1110 00 000 22478899999999 999999988655
No 242
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=8.3e-05 Score=57.75 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
.+.+|||+|.|=-+++.-+... +...|..+|-++.+++..++....+. ...++.....+.... ..+....+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a----qsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA----QSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh----HHHHhhCcc
Confidence 4678999998854444433322 55689999999999998877654431 000111111111100 111135699
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~ 158 (258)
|+|+|..++.+ .+....+++.|.++|+|.|..++..|....-..++..
T Consensus 105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d 152 (201)
T KOG3201|consen 105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD 152 (201)
T ss_pred cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence 99999988776 6778899999999999999999888876444444443
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.65 E-value=0.00028 Score=61.71 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=62.4
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
..++.++|||||++|+++..+...+. +|++||..+-. ..+...+ ++...+.|...... +.+.+|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~~---~V~h~~~d~fr~~p------~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDTG---QVEHLRADGFKFRP------PRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCCC---CEEEEeccCcccCC------CCCCCCE
Confidence 35899999999999999999999887 99999965421 2222222 78888888754221 2568999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~~i~~ 145 (258)
|+|-.+. ......+-|.+-|..| ..+|++
T Consensus 274 vVcDmve--------~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 274 LVCDMVE--------KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred EEEeccc--------CHHHHHHHHHHHHhcCcccEEEEE
Confidence 9886532 2334445555555444 344444
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.63 E-value=0.0006 Score=58.83 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEEcCCCC
Q 025059 17 YEFAKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCA 92 (258)
Q Consensus 17 ~~~~k~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~ 92 (258)
.-|+...|...... ...++||||||....---+... ...+++|+|+++.+++.|++..+.+ .+..++.+....-..
T Consensus 86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~ 165 (299)
T PF05971_consen 86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD 165 (299)
T ss_dssp HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence 36777665433211 2568999999987542222222 2349999999999999999999888 666678887664322
Q ss_pred CchhhhhhhcCCceeEEEecccccc
Q 025059 93 ENFETQMQEKANQADLVCCFQHLQM 117 (258)
Q Consensus 93 ~~~~~~~~~~~~~fD~V~~~~~l~~ 117 (258)
.+...+....+.||..+|+--+|.
T Consensus 166 -~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 166 -NIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp -SSTTTSTT--S-EEEEEE-----S
T ss_pred -ccchhhhcccceeeEEecCCcccc
Confidence 222222234579999999876664
No 245
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.61 E-value=0.00033 Score=57.12 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
+..|+|+|.-.|+.+..++.. +.++|+|+|+.-..... +..+.+.+..+++++++|..+......+.. ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 489999999999988877653 44699999996544322 223333333389999999877554332211 122
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
...+|+- -+-| +.++....|+....++++|+++|+.
T Consensus 111 ~~vlVil-Ds~H----~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 111 HPVLVIL-DSSH----THEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred CceEEEE-CCCc----cHHHHHHHHHHhCccCCCCCEEEEE
Confidence 3334432 2222 2344667778899999999999875
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.60 E-value=8.2e-05 Score=54.24 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=43.7
Q ss_pred EEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 36 LDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
||+|+..|..+..++.. +..+++++|..+. .+.+++.++..+...++++++++..+ ..+.+ +.+++|+|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~--~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSL--PDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHH--HH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHc--CCCCEEEEEE
Confidence 68999999887777654 2237999999985 22333333333333378999998733 22223 2479999976
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
-.. | ..+.....+..+.+.|+|||++++-
T Consensus 76 Dg~-H----~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGD-H----SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCC-C----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 542 2 2466788899999999999998874
No 247
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.54 E-value=0.00029 Score=54.01 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=46.9
Q ss_pred EEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059 34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (258)
+|||+|||.|..+..++.... .+++++|+++.+++.+++++..++.. ++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999888877654 38999999999999999998766432 47777777644
No 248
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0046 Score=50.00 Aligned_cols=105 Identities=16% Similarity=0.092 Sum_probs=77.9
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
+.++.+||=||..+|......++- +.+.++|++.|+.+....-....... ++--+..|+....-... --+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---Ni~PIL~DA~~P~~Y~~---~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---NIIPILEDARKPEKYRH---LVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---CceeeecccCCcHHhhh---hccccc
Confidence 348999999999999999988876 44689999999998876655554433 56667788765432222 245689
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|.+--+ ...+.+-+..|+..-|++||.+++.
T Consensus 148 viy~DVA------Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 148 VIYQDVA------QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEEEecC------CchHHHHHHHHHHHhcccCCeEEEE
Confidence 9876442 2456788899999999999987766
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.51 E-value=0.00076 Score=58.49 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (258)
.++..++|.-||.|+++..++.. +.++|+|+|.++.+++.|++++.... .++.+++++..+. ...+.. ...++|
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l--~~~l~~~~~~~vD 94 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANF--FEHLDELLVTKID 94 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHH--HHHHHhcCCCccc
Confidence 47789999999999999999876 34799999999999999999886542 2788888886542 222211 234678
Q ss_pred EEEec
Q 025059 108 LVCCF 112 (258)
Q Consensus 108 ~V~~~ 112 (258)
.|+.-
T Consensus 95 gIl~D 99 (305)
T TIGR00006 95 GILVD 99 (305)
T ss_pred EEEEe
Confidence 87664
No 250
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0013 Score=53.61 Aligned_cols=108 Identities=19% Similarity=0.058 Sum_probs=76.6
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.+.+|.+||++|-|-|....++...++.+-+-++..+..++..+....... .++....+-..+ ....+ +++.||
T Consensus 98 i~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeD--vl~~L--~d~~FD 171 (271)
T KOG1709|consen 98 ISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWED--VLNTL--PDKHFD 171 (271)
T ss_pred HhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHh--hhccc--cccCcc
Confidence 345899999999999988888888888788899999999887766443322 155555543322 11122 577899
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
-|.--- .-+.-+++..+.+.+.++|||+|++-..
T Consensus 172 GI~yDT----y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 172 GIYYDT----YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eeEeec----hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 994321 0134578899999999999999988543
No 251
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.43 E-value=3.8e-05 Score=61.99 Aligned_cols=94 Identities=20% Similarity=0.324 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
.+.++||||.|.|..+..++. -+.+|++.+.|..|+...+++ ++++ +-..+..+ .+-++|+|+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk------~ynV-l~~~ew~~---------t~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKK------NYNV-LTEIEWLQ---------TDVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhc------CCce-eeehhhhh---------cCceeehHH
Confidence 457999999999987776633 345799999999998766543 1122 11112111 345799999
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccC-CcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~Lkp-gG~~i~~ 145 (258)
|...+.-.+. .-.+++.++.+|+| +|.+|+.
T Consensus 175 clNlLDRc~~----p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRCFD----PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhhcC----hHHHHHHHHHHhccCCCcEEEE
Confidence 9886654444 66789999999999 8888876
No 252
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.36 E-value=0.0005 Score=54.80 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
...+.|+|+|+|.++.-.+.. ..+|++++.+|.-...|.+++.-.+.. ++..+.+|+.+-.+ ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f--------e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF--------ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc--------cccceeHH
Confidence 378999999999876655444 569999999999999999886444322 78999999977554 57899988
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
-. +.-++. .+.....+..+...||.++.++=
T Consensus 103 Em-lDTaLi-~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 103 EM-LDTALI-EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HH-hhHHhh-cccccHHHHHHHHHhhcCCcccc
Confidence 54 221122 23334556666668888887763
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.31 E-value=0.0085 Score=49.12 Aligned_cols=112 Identities=11% Similarity=-0.004 Sum_probs=83.2
Q ss_pred HHHhcCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059 25 IKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (258)
Q Consensus 25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (258)
+..+.+.+.++.||||-.+.+..++...+ ...+++.|+++..++.|.+.++..++..+++...+|... ++. .+
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~ 83 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE 83 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence 34556667779999999999888888874 468999999999999999999988877678888888632 231 35
Q ss_pred CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
..+|+|+...+- -.....++++-...|+.=-.+++. |+.
T Consensus 84 d~~d~ivIAGMG------G~lI~~ILee~~~~l~~~~rlILQ-Pn~ 122 (226)
T COG2384 84 DEIDVIVIAGMG------GTLIREILEEGKEKLKGVERLILQ-PNI 122 (226)
T ss_pred CCcCEEEEeCCc------HHHHHHHHHHhhhhhcCcceEEEC-CCC
Confidence 589999876632 334667777777777754456555 443
No 254
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.014 Score=50.06 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
.|+...+|.--|.|+.+..++.... ++++|+|-++.+++.|++++..... ++.+++.+.
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~--r~~~v~~~F 82 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG--RVTLVHGNF 82 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC--cEEEEeCcH
Confidence 4788999999999999999998853 6899999999999999999866431 556665553
No 255
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.017 Score=48.28 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+...+|+|+|+..-+.-+.+. ...+++.+|+|...+....+.+.....+..+.-+++|... ++.+ .++.-
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~----~~~~~ 153 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAE----LPRGG 153 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhc----ccCCC
Confidence 578999999998666555543 2348999999999998766655555444466667777421 1211 11222
Q ss_pred eEE--EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLV--CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V--~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
-.+ .....+.+ -+......++..+...|+||-+|++-
T Consensus 154 ~Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 154 RRLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred eEEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence 222 22334554 45778899999999999999998876
No 256
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.23 E-value=0.0085 Score=48.95 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHh-------------------------------
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWEN------------------------------- 76 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~------------------------------- 76 (258)
.+.++.|-|||.|.++--+.-. ....++|.|+++.+++.|++++.-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4578999999999877544222 456899999999999999885421
Q ss_pred ----------cCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecccccc--ccC---CHHHHHHHHHHHHhcccCCcE
Q 025059 77 ----------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM--CFE---TEERARRLLQNVSSLLKPGGY 141 (258)
Q Consensus 77 ----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~--~~~---~~~~~~~~l~~i~~~LkpgG~ 141 (258)
.+-.......++|+++....... +.....|+|+.-..... .+. +..-...++..++.+|.++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhh-ccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 00122457888998774433222 23455799976432111 112 234578999999999965665
Q ss_pred EEEE
Q 025059 142 FLGI 145 (258)
Q Consensus 142 ~i~~ 145 (258)
+.++
T Consensus 210 V~v~ 213 (246)
T PF11599_consen 210 VAVS 213 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.23 E-value=0.0011 Score=55.52 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=57.4
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
+++..+|+|||||.=-++..|.... ...|+|+||+..+++....-....+. .......|+...+ +....|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-------~~~~~D 173 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-------PKEPAD 173 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEES
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-------CCCCcc
Confidence 3457899999999988888887663 34999999999999998877666543 5667777876554 467899
Q ss_pred EEEecccccc
Q 025059 108 LVCCFQHLQM 117 (258)
Q Consensus 108 ~V~~~~~l~~ 117 (258)
+....-.++.
T Consensus 174 laLllK~lp~ 183 (251)
T PF07091_consen 174 LALLLKTLPC 183 (251)
T ss_dssp EEEEET-HHH
T ss_pred hhhHHHHHHH
Confidence 9998887775
No 258
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00064 Score=61.96 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=50.4
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
++++..+||++||||.....+++ +...|+|+++++.+++.|+.+...++.. +++|+++-+
T Consensus 381 l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqa 440 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQA 440 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc-ceeeeecch
Confidence 34678899999999988777754 5669999999999999999998877654 899999944
No 259
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.18 E-value=0.0034 Score=58.38 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCCccHHHHHHc----C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (258)
+..+|+|.+||+|+++...... . ...++|.++++.....|+-.+--++....+....+|....+.... ....+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence 6679999999999988777554 1 246999999999999999888766543234556666544333110 113467
Q ss_pred eeEEEeccccc---c-----------------ccCCHHHH-HHHHHHHHhcccCCcEEEEEEcCc
Q 025059 106 ADLVCCFQHLQ---M-----------------CFETEERA-RRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 106 fD~V~~~~~l~---~-----------------~~~~~~~~-~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
||.|+++-... + .+.+.... ..+++++...|+|||..-+..|++
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 99887753221 0 11222223 789999999999999766666665
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.90 E-value=0.02 Score=50.45 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHH--Hhc---C-CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTW--ENQ---R-KNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~--~~~---~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
-.+||=+|.|.|--+..+.+.+ ..+++-+|.+|+|++.++... ... . .+.+++.+..|+.+ . ++...+
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--w---lr~a~~ 364 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--W---LRTAAD 364 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--H---HHhhcc
Confidence 3679999999999888888876 789999999999999998432 211 1 13478888888743 2 222456
Q ss_pred ceeEEEeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 105 QADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
.||.|+.-.-=..... ..---..+-.-+++.|+++|.+++..-+
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 9999987542111000 0011256777889999999999988433
No 261
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.88 E-value=0.013 Score=52.38 Aligned_cols=113 Identities=14% Similarity=0.023 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
|+.+|||+|+..|+=+...+.. ..+.+++.|.+..-+...+..+...+.. +......|....+- .. -.++||-
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~--~~--~~~~fDR 315 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPE--KE--FPGSFDR 315 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccc--cc--cCcccce
Confidence 7899999999999988777654 5568999999999999988888776532 45566666643221 11 1238999
Q ss_pred EEecccccc--------c---cCCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 109 VCCFQHLQM--------C---FETE-------ERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 109 V~~~~~l~~--------~---~~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
|..-..... + ..+. .-.++++.....++++||+++-++++
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 864321110 0 1111 12477888899999999999987554
No 262
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.85 E-value=0.011 Score=53.08 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.+.+|||.=+|+|.=+..++.. +...|+.-|+|+++++..+++.+.++... ++...+.|+.. + +......||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~--l---l~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV--L---LYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH--H---HCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH--H---hhhccccCC
Confidence 3579999999999777777666 45689999999999999999988777655 57888888632 1 112468999
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~ 152 (258)
+|=. ++-.....++..+.+.++.||.+.+|..|...+
T Consensus 124 ~IDl--------DPfGSp~pfldsA~~~v~~gGll~vTaTD~a~L 160 (377)
T PF02005_consen 124 VIDL--------DPFGSPAPFLDSALQAVKDGGLLCVTATDTAVL 160 (377)
T ss_dssp EEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred EEEe--------CCCCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence 9943 122234567888888999999999997775433
No 263
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.00047 Score=53.24 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=50.1
Q ss_pred cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHH
Q 025059 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVE 161 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~ 161 (258)
.+++.|+|.+..++.+ .+.+....+++++++.|||||++-+..|+...+...|...++
T Consensus 44 ~dns~d~iyaeHvlEH--lt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vq 101 (185)
T COG4627 44 EDNSVDAIYAEHVLEH--LTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQ 101 (185)
T ss_pred CCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhh
Confidence 5789999999888766 355778899999999999999999999999999988886543
No 264
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.78 E-value=0.017 Score=51.08 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=63.2
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc----------CC-------CeEEEEecChhHHHHHHHHHHhc------CCCceeEE
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA----------LI-------ANYIGIDVATSGIGEARDTWENQ------RKNFIAEF 85 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~----------~~-------~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~ 85 (258)
.+...+|+|+||..|.++..+... .. -+++.-|.-.+=....-+.+... ....-+.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 345679999999999998777442 11 16777776554333222222111 11111222
Q ss_pred EEcCCCCCchhhhhhhcCCceeEEEeccccccccC------C-----------------------------HHHHHHHHH
Q 025059 86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFE------T-----------------------------EERARRLLQ 130 (258)
Q Consensus 86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l~ 130 (258)
+.+...+.-+ |.++.|++.+..++||+=. . ..++..+|+
T Consensus 94 vpgSFy~rLf------P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~ 167 (334)
T PF03492_consen 94 VPGSFYGRLF------PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK 167 (334)
T ss_dssp EES-TTS--S-------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccC------CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3343322222 6899999999999998611 0 145677888
Q ss_pred HHHhcccCCcEEEEEEcC
Q 025059 131 NVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 131 ~i~~~LkpgG~~i~~~~~ 148 (258)
.=++-|+|||.++++.+.
T Consensus 168 ~Ra~ELv~GG~mvl~~~g 185 (334)
T PF03492_consen 168 ARAEELVPGGRMVLTFLG 185 (334)
T ss_dssp HHHHHEEEEEEEEEEEEE
T ss_pred HhhheeccCcEEEEEEee
Confidence 888999999999999543
No 265
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.63 E-value=0.02 Score=48.96 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
...+||=+|-|.|+.+....++ ...++.-+|+....++..++-.+... .+.++.+.-+|... +.+.. +.++|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence 4589999999999998877776 45689999999999998888665432 13367888887632 32232 47899
Q ss_pred eEEEeccccccccCC-HHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059 107 DLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (258)
Q Consensus 107 D~V~~~~~l~~~~~~-~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~ 158 (258)
|+|+.-..=.- -.. ..-.+.+++.+.+.||+||+++... ++-++...|.+
T Consensus 197 dVii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i~ 247 (337)
T KOG1562|consen 197 DVIITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYIK 247 (337)
T ss_pred eEEEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHHH
Confidence 99976432110 000 1124778899999999999998775 55455555544
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=96.59 E-value=0.0077 Score=52.01 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh
Q 025059 20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (258)
Q Consensus 20 ~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 76 (258)
+-..+|..+..+|..|||.-||+|..+....+.+- +++|+|++++.++.|++|+..
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 34566777788999999999999987777766555 899999999999999999864
No 267
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.53 E-value=0.018 Score=47.94 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=71.3
Q ss_pred HhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
.+++|+.+||-||++.|.......+- +-.-|++++.|+.+=...-.-.+... ++.-+.-|+....-... .-.
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt---NiiPIiEDArhP~KYRm---lVg 225 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT---NIIPIIEDARHPAKYRM---LVG 225 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC---CceeeeccCCCchheee---eee
Confidence 44569999999999999988888765 34579999999866443322222211 55556667655321111 123
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
..|+|.+-- ....+.+-+.-|..-.||+||.|++++
T Consensus 226 mVDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 226 MVDVIFADV------AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eEEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 567775432 234566777778999999999999983
No 268
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.49 E-value=0.012 Score=47.70 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ 77 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~ 77 (258)
.-.+.|||||-|+++..++.. +...+.|.+|--..-++.++|+...
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 356999999999999999777 4457889999988888888888654
No 269
>PRK10742 putative methyltransferase; Provisional
Probab=96.45 E-value=0.026 Score=47.49 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=56.9
Q ss_pred CCCC--EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc------C--CCceeEEEEcCCCCCchhhhh
Q 025059 30 HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------R--KNFIAEFFEADPCAENFETQM 99 (258)
Q Consensus 30 ~~~~--~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~--~~~~~~~~~~d~~~~~~~~~~ 99 (258)
+++. +|||+-+|.|.++..++..+. +|+++|-++.+....+..+... . ...+++++++|... + +
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~--~---L 158 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--A---L 158 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH--H---H
Confidence 4666 899999999999999998887 5999999999887777666542 1 11267888888632 2 1
Q ss_pred hhcCCceeEEEecc
Q 025059 100 QEKANQADLVCCFQ 113 (258)
Q Consensus 100 ~~~~~~fD~V~~~~ 113 (258)
.....+||+|..--
T Consensus 159 ~~~~~~fDVVYlDP 172 (250)
T PRK10742 159 TDITPRPQVVYLDP 172 (250)
T ss_pred hhCCCCCcEEEECC
Confidence 11234799997654
No 270
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.36 E-value=0.011 Score=48.68 Aligned_cols=53 Identities=26% Similarity=0.263 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHH
Q 025059 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (258)
Q Consensus 19 ~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~ 72 (258)
-+-..+|..+..++..|||.-||+|..+......+- +.+|+|+++...+.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 344566777888999999999999988777766665 89999999999998864
No 271
>PRK13699 putative methylase; Provisional
Probab=96.32 E-value=0.016 Score=48.34 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059 21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (258)
Q Consensus 21 k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 77 (258)
-..+|+.+..+|..|||.-||+|..+......+. +++|+|+++...+.|.+|+...
T Consensus 153 ~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 153 LQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 3456677778999999999999988877766655 8999999999999999998653
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.016 Score=50.68 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
...+|||+|.|.|.-+.+...-- ...++-++.|+..-+......+.... .....-..|+....+ +-+.-|.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl------~lp~ad~ 185 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRL------SLPAADL 185 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhcc------CCCccce
Confidence 34679999999996555544332 22455666665544433322221110 011222222222111 2233444
Q ss_pred EEecccccccc--CCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHHh
Q 025059 109 VCCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN 159 (258)
Q Consensus 109 V~~~~~l~~~~--~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~~ 159 (258)
+++..+++-.+ ..+..+...++.+-.++.|||.+++. +|.+-.+..+.++.
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ 241 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI 241 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence 44444444322 22334556889999999999999999 44454555555544
No 273
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.013 Score=48.43 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCCccHHHHHHcCC----------CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh-hh
Q 025059 32 YVTVCDLYCGAGVDVDKWETALI----------ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ 100 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~ 100 (258)
-.+|+|||...|.+++-+.+..+ ..++++|+.+.+ .. ..+.-+++|+.+..-.+. +.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI---~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PI---EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------cc---CceEEeecccCCHhHHHHHHH
Confidence 36899999999999988876511 139999987544 11 156778999987653322 21
Q ss_pred h-cCCceeEEEeccc-----cccccC--CHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 101 E-KANQADLVCCFQH-----LQMCFE--TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 101 ~-~~~~fD~V~~~~~-----l~~~~~--~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
. ..++.|+|+|-.+ +|.+-+ ..+-+..+|.-...+|+|||.|+.-+..+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 1 3468999999764 343111 12345677788889999999999876555
No 274
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.25 E-value=0.013 Score=50.84 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=53.5
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~ 105 (258)
..++...+|.--|.|+.+..++.. +.++++|+|.++.+++.|++++... ..++.+++++..+ +...+.. ...+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~--l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN--LDEYLKELNGINK 93 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG--HHHHHHHTTTTS-
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH--HHHHHHHccCCCc
Confidence 357889999999999999999986 4479999999999999999888754 2278888888644 2222211 2347
Q ss_pred eeEEEe
Q 025059 106 ADLVCC 111 (258)
Q Consensus 106 fD~V~~ 111 (258)
+|.|+.
T Consensus 94 ~dgiL~ 99 (310)
T PF01795_consen 94 VDGILF 99 (310)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 777765
No 275
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.13 E-value=0.1 Score=46.88 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.8
Q ss_pred cCCceeEEEeccccccccCCH----------------------------------HHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 102 KANQADLVCCFQHLQMCFETE----------------------------------ERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
|.++.+++.+..++||.=.-. .+...+|+.-++-|.|||.++++++
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 678999999999999852100 2356677778888999999999965
Q ss_pred C
Q 025059 148 D 148 (258)
Q Consensus 148 ~ 148 (258)
.
T Consensus 239 G 239 (386)
T PLN02668 239 G 239 (386)
T ss_pred c
Confidence 4
No 276
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.13 E-value=0.58 Score=39.19 Aligned_cols=104 Identities=13% Similarity=-0.088 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
.|.+||=+|=+--..+...+.....+++.+|+++..++.-++..+..+. +++....|+.+. +-+. -.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~-LP~~---~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDP-LPEE---LRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TT---TSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEeccccc-CCHH---HhcCCCEEE
Confidence 6899999984433211111223556999999999999999888877755 688899998653 2111 258999997
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCc-EEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~ 145 (258)
+-- . .+.+.+..++......|+..| ..++.
T Consensus 118 TDP--P---yT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 118 TDP--P---YTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp E--------SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred eCC--C---CCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 743 3 367889999999999999877 44444
No 277
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.05 E-value=0.016 Score=49.73 Aligned_cols=71 Identities=18% Similarity=0.095 Sum_probs=53.1
Q ss_pred EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
+|+|+.||.|++...+...+...+.++|+++.+++..+.+++. ..++.|+.+..... ....+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence 6999999999999988888887889999999999887776642 25667776543211 035699998766
Q ss_pred cc
Q 025059 114 HL 115 (258)
Q Consensus 114 ~l 115 (258)
..
T Consensus 71 PC 72 (275)
T cd00315 71 PC 72 (275)
T ss_pred CC
Confidence 33
No 278
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.093 Score=40.46 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
+..+.+|||+|.|......++.+...-+|+++++=.+.+++-+.-..+......|...|+-..++ ..|..|+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~vv 143 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNVV 143 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceEE
Confidence 45689999999999999998888668999999999998888776555555577888888755444 2344444
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
++. .++.+..+-..+..-+..|-.++..
T Consensus 144 iFg-------aes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 144 IFG-------AESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred Eee-------hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 333 2344555566677777888877766
No 279
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.99 E-value=0.046 Score=46.03 Aligned_cols=111 Identities=15% Similarity=-0.025 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHH----HHhcCCCceeEEEEcCCCCCchhhhhhhcCCc-
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT----WENQRKNFIAEFFEADPCAENFETQMQEKANQ- 105 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~- 105 (258)
.+.+||++|+|+|-....++.....+|+..|+..........+ ......+..+.....+-.+..-.... ...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---LPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc---cCCc
Confidence 3567999999999666666665666899999765443322221 11122222344444443332222222 122
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+|+|++.-++.. .+....++..++..|-.+|.+++.++-
T Consensus 163 ~DlilasDvvy~----~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 163 FDLILASDVVYE----EESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred ccEEEEeeeeec----CCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 999998875543 555667777788888888866665443
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.92 E-value=0.066 Score=47.17 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=65.7
Q ss_pred HHhcCCCCEEEEEcCC-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059 26 KIYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 26 ~~~~~~~~~VLDlGcG-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
...+.|+.+|+=.|+| -|..+.++++.-..+|+++|.|++-++.|++--.. .++... ..... +.+ .+
T Consensus 161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~-~~~~~-~~~---~~ 228 (339)
T COG1064 161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS-DSDAL-EAV---KE 228 (339)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC-Cchhh-HHh---Hh
Confidence 3445689999999988 34666777775336999999999999998766322 233322 11112 111 23
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.||+|+..-. ...+....+.|++||.+++.
T Consensus 229 ~~d~ii~tv~-----------~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 229 IADAIIDTVG-----------PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred hCcEEEECCC-----------hhhHHHHHHHHhcCCEEEEE
Confidence 4999977553 24567778899999999887
No 281
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.1 Score=46.18 Aligned_cols=123 Identities=15% Similarity=0.019 Sum_probs=71.8
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc---C--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh---hhhh
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQ 100 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~ 100 (258)
++|+.+|||+|+..|+=+.++... . .+.+++-|.++.-+........... .........|+...+-. ..-.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence 458999999999999988777665 2 2379999999876666555442211 11222233332211100 0001
Q ss_pred hcCCceeEEEeccccc---------cccCC-H---------HHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059 101 EKANQADLVCCFQHLQ---------MCFET-E---------ERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (258)
Q Consensus 101 ~~~~~fD~V~~~~~l~---------~~~~~-~---------~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~ 152 (258)
.....||-|.|---.. ..+.. + .-.-.++.+-.++||+||.++-++.+-..+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 1345788887632110 00010 1 112468889999999999999997776433
No 282
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.80 E-value=0.03 Score=46.35 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
++.++||||.|.-..=-.+-.+ ...+.+|.|+++.+++.|+.....+ ++...+++....-.+. +.+.....++.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~-if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDA-IFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccc-cccccccccceeee
Confidence 5678999988864321111111 1238999999999999999988765 3332344433322111 22222224789999
Q ss_pred EEecccccc
Q 025059 109 VCCFQHLQM 117 (258)
Q Consensus 109 V~~~~~l~~ 117 (258)
++|+-.+|.
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999988875
No 283
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.56 E-value=0.0065 Score=44.30 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=31.6
Q ss_pred ceeEEEeccccccc--cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMC--FETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~--~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+||+|+|..+.-++ -.+.+.+..+++.+.+.|+|||.||+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998765432 123567899999999999999999987
No 284
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.54 E-value=1.3 Score=37.68 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhc---CCc
Q 025059 33 VTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ 105 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~ 105 (258)
..|+.||||- ++..+.-. +. ..++-+|. ++.++.-++.+...+ ...+..++.+|+. ....+.+... ...
T Consensus 83 ~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 83 RQVVILGAGL--DTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA 158 (260)
T ss_pred cEEEEeCCcc--ccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence 4699999986 44444322 22 24555554 345555555565421 2236788999987 4433333211 234
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.-++++-.++.| .+.+....+++.+.+...||+.+++...+.
T Consensus 159 ptl~i~EGvl~Y--L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMY--LTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred Ceeeeecchhhc--CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 556777777777 568889999999999998999999986553
No 285
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.0058 Score=55.63 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
++.+|||.=|++|..+..++.. +..++++-|.++++++.-+.+.+-+.....++-.+.|+...-+. -+.....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~--~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE--HPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh--ccccccccce
Confidence 4678999999999999999887 56789999999999998888776654333344555554321110 0112478999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
|-. ++-.....+|....+.++.||.+.+|..|.
T Consensus 187 IDL--------DPyGs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 187 IDL--------DPYGSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred Eec--------CCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence 932 222234567777888889999999996654
No 286
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.44 E-value=0.016 Score=53.15 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=64.2
Q ss_pred CEEEEEcCCCCccHHHHHHcCCC--eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-CchhhhhhhcCCceeEE
Q 025059 33 VTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADLV 109 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~fD~V 109 (258)
.+|+|+..|.|+++.++...+.. .|+-+ ..++-+..--.| ++ + =...|.++ .+. -+.+||+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---I-G~yhDWCE~fsT------YPRTYDLl 431 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---I-GVYHDWCEAFST------YPRTYDLL 431 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---c-hhccchhhccCC------CCcchhhe
Confidence 57999999999999999766532 22222 122222222111 10 1 11122221 122 47899999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~ 158 (258)
.+...+.. ..+.-.+..++-+|-|+|+|||.+|+. +...+..+..+
T Consensus 432 HA~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~ 477 (506)
T PF03141_consen 432 HADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKK 477 (506)
T ss_pred ehhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHH
Confidence 88764432 233446789999999999999999886 44444444444
No 287
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.071 Score=47.11 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=78.3
Q ss_pred hHHhHHHHHHHHHHHHhcCC-CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcC
Q 025059 12 THHRLYEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89 (258)
Q Consensus 12 ~~~~~~~~~k~~li~~~~~~-~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d 89 (258)
|..+++.=+.-.+++.+... ..+|||.=+|+|.=...++.. +..+++.-|+|+.+++..+++...+. +.+...+..|
T Consensus 32 P~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~D 110 (380)
T COG1867 32 PAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKD 110 (380)
T ss_pred chhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecch
Confidence 33344433333344444432 579999999999766666555 34489999999999999999887662 1144455555
Q ss_pred CCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059 90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~ 150 (258)
+.. .+......||+|=.- +-...--++....+.++.||++-+|..|..
T Consensus 111 AN~-----lm~~~~~~fd~IDiD--------PFGSPaPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 111 ANA-----LLHELHRAFDVIDID--------PFGSPAPFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred HHH-----HHHhcCCCccEEecC--------CCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence 422 122234789999331 111123456666667778999999966643
No 288
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.26 E-value=0.057 Score=49.76 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcC----CCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc
Q 025059 18 EFAKTALIKIYSH----PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (258)
Q Consensus 18 ~~~k~~li~~~~~----~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 88 (258)
.=|..+|.++... ....|+=+|.|.|-+..+..+. ..-++++++-+|+++...+.+ .-...+.+++++..
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEec
Confidence 3344555555322 1356889999999888766553 223799999999999877663 22233448999999
Q ss_pred CCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
|+..-+. +..+.|++++-. + ..|..-+--.+.|.-+.+.|||+|+.|=
T Consensus 429 DMR~w~a------p~eq~DI~VSEL-L-GSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 429 DMRKWNA------PREQADIIVSEL-L-GSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccccCC------chhhccchHHHh-h-ccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 9976442 357899987632 2 2344455567889999999999997753
No 289
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.25 Score=43.70 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc---------CCCeEEEEecChhHHHHHHHHHHhc
Q 025059 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWENQ 77 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~ 77 (258)
.|+...+-+.-.++...++|||.|+|.++..+++. ...++.-+++|++..+.-+++++..
T Consensus 64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 66666665555556788999999999999888664 2458999999999999888877654
No 290
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.18 E-value=0.047 Score=44.02 Aligned_cols=105 Identities=23% Similarity=0.151 Sum_probs=58.6
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHH----------HHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGI----------GEARDTWENQRKNFIAEFFEADPCAENFE 96 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l----------~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (258)
++|+.+|+|+-.|.|.++.-++.. ..+.|+++-..+... ..+++.... +.+.+-.+.....
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-----N~e~~~~~~~A~~-- 118 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-----NVEVIGKPLVALG-- 118 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-----hhhhhCCcccccC--
Confidence 458899999999999988877654 234666664433211 111111111 1111111111111
Q ss_pred hhhhhcCCceeEEEec---cccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 97 TQMQEKANQADLVCCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 97 ~~~~~~~~~fD~V~~~---~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+....|++... ..+|.-..+......+...+.+.|||||++++.
T Consensus 119 -----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 -----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred -----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 23344444321 123333334566788999999999999999887
No 291
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.14 E-value=0.11 Score=45.05 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=75.8
Q ss_pred CEEEEEcCCCCccHHHHHHcC-------C--------------CeEEEEecCh--hHHHHHHHHHHhc------------
Q 025059 33 VTVCDLYCGAGVDVDKWETAL-------I--------------ANYIGIDVAT--SGIGEARDTWENQ------------ 77 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~-------~--------------~~v~gvD~s~--~~l~~a~~~~~~~------------ 77 (258)
.+||-||.|.|.-+..++..- . -.++.+||.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987666554321 0 2799999876 3444443333222
Q ss_pred ----CCCceeEEEEcCCCCCchhhhhhh-cCCceeEEEeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 78 ----RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 78 ----~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
...+++.|.+.|+....-.+...- .....++|+..|.++-.|. +.....++|.++...++||..+++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 235578999999976543221000 1236899998888764433 3567789999999999999998887
No 292
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.12 E-value=0.026 Score=40.97 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecC
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s 63 (258)
+.....|||||+|-+..-+...++ .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 346799999999987777777777 78899964
No 293
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.06 E-value=0.051 Score=42.48 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHH-HHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
+.+++=+|+..-..=......+.+++.-++.++--++. .+.++. .+... .+...+....++||.++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s--------si~p~-----df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS--------SILPV-----DFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc--------cccHH-----HHHHHHHHhhccchhhh
Confidence 45677777665432233334466678888865432221 111110 11111 23333334578999999
Q ss_pred eccccccc--------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 111 ~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
|..++.+. ..+ ..-...+.++.++|||||.+++..|-+
T Consensus 69 s~~siEh~GLGRYGDPidp-~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDP-IGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred eechhccccccccCCCCCc-cccHHHHHHHHHhhccCCeEEEEeecC
Confidence 88776332 111 223567788999999999999998866
No 294
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.03 E-value=0.047 Score=49.27 Aligned_cols=56 Identities=16% Similarity=0.031 Sum_probs=46.7
Q ss_pred CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc
Q 025059 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 88 (258)
..|||||+|||-++....+.+...+++++.=..|.+.|++....++...++..+..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 35999999999888777777877999999999999999999888876656655543
No 295
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.01 E-value=0.017 Score=49.44 Aligned_cols=96 Identities=20% Similarity=0.050 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCCccHH-HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~-~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+..|.|+=.|-|.++. .+...+...|.++|.+|.+++..++.++.+....+...+.+|..... +....|.|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-------~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-------PRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-------ccccchhe
Confidence 46889999999999998 55566888999999999999999998887755445666777765543 46788888
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGY 141 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~ 141 (258)
.... .-.+++... ...++|+|.|-
T Consensus 267 nLGL----lPSse~~W~----~A~k~Lk~egg 290 (351)
T KOG1227|consen 267 NLGL----LPSSEQGWP----TAIKALKPEGG 290 (351)
T ss_pred eecc----ccccccchH----HHHHHhhhcCC
Confidence 5443 112233333 34456677554
No 296
>PHA01634 hypothetical protein
Probab=94.88 E-value=0.086 Score=39.59 Aligned_cols=47 Identities=4% Similarity=-0.193 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 77 (258)
.+.+|+|||.+-|..+..++..+...|+++++++...+..++..+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 67899999999999999999999999999999999998888766543
No 297
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.79 E-value=0.13 Score=42.92 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=45.0
Q ss_pred CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHH---HHHHhcCCC-----ceeEEEEcCCCCCchhhhhhhcCC
Q 025059 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRKN-----FIAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~---~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
.+|||.-+|-|.++.-++..|. +|++++-|+-+....+ +++...... .+++++++|..+ +.. .++.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~--~L~---~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE--YLR---QPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC--HCC---CHSS
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH--HHh---hcCC
Confidence 3899999999999998887776 8999999997755444 344332211 278999999755 211 2578
Q ss_pred ceeEEEecc
Q 025059 105 QADLVCCFQ 113 (258)
Q Consensus 105 ~fD~V~~~~ 113 (258)
+||+|..--
T Consensus 151 s~DVVY~DP 159 (234)
T PF04445_consen 151 SFDVVYFDP 159 (234)
T ss_dssp --SEEEE--
T ss_pred CCCEEEECC
Confidence 999998754
No 298
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.70 E-value=0.31 Score=39.32 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCCccHHHHHHc----C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCC
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KAN 104 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 104 (258)
++..|+|.|.-.|+.+..++.. + ..+++++||+-..+..+.... .++.|++++-.+..+...... +++
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 3478999999999988877654 2 348999999987766544331 178999999877655433221 233
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.--+.+|.-+-|. .++..+-++....+|..|-++++.
T Consensus 143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence 3344555555553 666777888888999999998876
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.66 E-value=0.29 Score=43.59 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc-CCcee
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD 107 (258)
++.+|+=+|||+ |.++..+++. +.++++.+|.++.-++.|++..... .......+.......... ...+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence 455999999998 4444555444 6679999999999999998765321 111111111111111112 23799
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+-.-+ ...++..+.++++|||.+++.
T Consensus 241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 241 VVIEAVG----------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence 9965443 234788889999999999887
No 300
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.56 E-value=0.09 Score=47.26 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=65.6
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhh--cC
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KA 103 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~--~~ 103 (258)
..++.+||.+|||. |..+..+++. +..+++++|.+++.++.+++... +..+. .... .+.+.+.. ..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~--~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETIN--FEEVDDVVEALRELTGG 252 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEc--CCcchHHHHHHHHHcCC
Confidence 34788999999987 7777777666 43469999999999888876531 12221 1111 12222211 23
Q ss_pred CceeEEEecccccc-----------ccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 104 NQADLVCCFQHLQM-----------CFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 104 ~~fD~V~~~~~l~~-----------~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
..+|+|+..-.-+. .+....+....+..+.++|+++|.++..
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 46899876432110 0111122345778888999999999877
No 301
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.29 E-value=0.055 Score=47.33 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=78.1
Q ss_pred cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHH-------HHHHHhcCC-CceeEEEEcCCCCCchhhhhh
Q 025059 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA-------RDTWENQRK-NFIAEFFEADPCAENFETQMQ 100 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a-------~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 100 (258)
+.||..|+|-=.|||+++...+.-|. .++|.||+-.++... +.++++.+. ..-+....+|....++.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r---- 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR---- 280 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence 45899999999999999888877666 899999998888732 334444431 22356788888877775
Q ss_pred hcCCceeEEEecc--cc-----------------------ccccCC----HHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 101 EKANQADLVCCFQ--HL-----------------------QMCFET----EERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 101 ~~~~~fD~V~~~~--~l-----------------------~~~~~~----~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
....||.|+|-- ++ |+-... ..-...+++-.++.|..||.+++..|-
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 356899999842 11 110000 022355677778889999999888764
No 302
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.29 E-value=1.3 Score=39.76 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCCcc----HHHHHHc--C-C-CeEEEEec----ChhHHHHHHHHHHhc--CCCceeEEEEc---CCCCC
Q 025059 31 PYVTVCDLYCGAGVD----VDKWETA--L-I-ANYIGIDV----ATSGIGEARDTWENQ--RKNFIAEFFEA---DPCAE 93 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~----~~~~~~~--~-~-~~v~gvD~----s~~~l~~a~~~~~~~--~~~~~~~~~~~---d~~~~ 93 (258)
+..+|+|+|.|.|.- +..++.. + + -++||++. +...++.+.+++... .++...+|... +..+.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 557899999999832 2222222 1 1 28999999 888888888887543 22334455442 22222
Q ss_pred chhhhhhhcCCceeEEEeccccccccCCH---H-HHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHHh
Q 025059 94 NFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN 159 (258)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~---~-~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~~ 159 (258)
... .+....+..=+|.|.+.+|++.... + ....+|+ ..+.|+|.-+++.. ..+...+..++.+.
T Consensus 190 ~~~-~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~n~~~F~~RF~ea 260 (374)
T PF03514_consen 190 DPS-MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADHNSPSFLERFREA 260 (374)
T ss_pred CHH-HhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCCCCCchHHHHHHH
Confidence 111 1211334555677788888865222 1 2344555 55578998655554 22345555666554
No 303
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.03 E-value=0.28 Score=45.84 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-------------chh
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NFE 96 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-------------~~~ 96 (258)
++.+|+=+|||. |..+...++.....|+++|.+++.++.+++- ..++...|..+. .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--------GA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--------GAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEEeccccccccccchhhhcchhHH
Confidence 689999999997 4444555555333899999999998888752 233332222110 100
Q ss_pred h----hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 97 ~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
. .+.+.-..+|+|+....... ......+.+++.+.+||||.++....
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 01111246999987653321 11122335889999999999887643
No 304
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.92 E-value=0.76 Score=33.47 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=61.5
Q ss_pred CCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccc
Q 025059 40 CGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ 116 (258)
Q Consensus 40 cG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~ 116 (258)
||.|..+..+++. ....++.+|.+++.++.+++. .+.++.+|..+....... .-.+.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~--- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERA--GIEKADAVVILT--- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHT--TGGCESEEEEES---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhc--CccccCEEEEcc---
Confidence 5556666666543 334899999999998877654 357899999876544333 345788877643
Q ss_pred cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059 117 MCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (258)
Q Consensus 117 ~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~ 151 (258)
. .......+....+-+.|...++....+...
T Consensus 71 ---~-~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 71 ---D-DDEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp ---S-SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred ---C-CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 2 233445555666777888888877766544
No 305
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.85 E-value=0.11 Score=45.15 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=51.6
Q ss_pred EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
+++||-||-|++...+...+...+.++|+++.+.+.-+.++. .....|+...... .+ +. .+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l--~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DL--PK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HH--HH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-cc--cc-cceEEEecc
Confidence 799999999999999988888789999999998887776663 5788888765543 22 22 599998765
Q ss_pred c
Q 025059 114 H 114 (258)
Q Consensus 114 ~ 114 (258)
.
T Consensus 70 P 70 (335)
T PF00145_consen 70 P 70 (335)
T ss_dssp -
T ss_pred C
Confidence 3
No 306
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.83 E-value=0.92 Score=35.88 Aligned_cols=108 Identities=17% Similarity=0.073 Sum_probs=57.5
Q ss_pred EcCCCCccHHHHHHc-C-CCeEEEEecChh--HHHH---HHHHHHhcC-CCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 38 LYCGAGVDVDKWETA-L-IANYIGIDVATS--GIGE---ARDTWENQR-KNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 38 lGcG~G~~~~~~~~~-~-~~~v~gvD~s~~--~l~~---a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
+|=|.=.++..++.. + ...++++-..+. ..+. +..++.... .+ -......|+....- ........||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~--~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHK--HFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccc--cccccCCcCCEE
Confidence 444444555555554 3 346766654443 2221 222222221 11 12335555554332 222246899999
Q ss_pred Eeccccccc---------cCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 110 CCFQHLQMC---------FETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 110 ~~~~~l~~~---------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+-+|..... -.+..-+..++..+..+|+++|.+.++..+
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 887733210 011234678899999999999999888444
No 307
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.72 E-value=1.1 Score=35.77 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCC-EEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCC--CceeEEEEcCCCCCchhhhhhhc---C
Q 025059 31 PYV-TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK---A 103 (258)
Q Consensus 31 ~~~-~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~---~ 103 (258)
++. .|+.||||-=.-...+.... ...++-+|. +++++.-++.++.... ..+.+++.+|+.+..+...+... .
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 555 89999998754434443322 335666665 4455555555544311 11346799999876665555422 4
Q ss_pred CceeEEEeccccccccCCHHHHHHHHHHHH
Q 025059 104 NQADLVCCFQHLQMCFETEERARRLLQNVS 133 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~ 133 (258)
...-++++-.++.| .+.+....+++.++
T Consensus 156 ~~ptl~i~Egvl~Y--l~~~~~~~ll~~ia 183 (183)
T PF04072_consen 156 DRPTLFIAEGVLMY--LSPEQVDALLRAIA 183 (183)
T ss_dssp TSEEEEEEESSGGG--S-HHHHHHHHHHH-
T ss_pred CCCeEEEEcchhhc--CCHHHHHHHHHHhC
Confidence 66778888888888 46777888887663
No 308
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.65 E-value=0.98 Score=42.28 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCC
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKAN 104 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 104 (258)
|+..|.|.+||+|+++...... ....++|.+....+...|+..+.-+.... ......+|....+- .. ...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d--~~--~~~ 292 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKE--WE--NEN 292 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcc--cc--ccc
Confidence 5678999999999998765432 12369999999999998887654332110 11222333222110 00 234
Q ss_pred ceeEEEecccc---------------------ccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 105 QADLVCCFQHL---------------------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 105 ~fD~V~~~~~l---------------------~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+||+|+++-.. |........-..++..+..+|++||...+..|..
T Consensus 293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 57776654311 1000111234678888999999999877665543
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.40 E-value=0.17 Score=42.75 Aligned_cols=59 Identities=5% Similarity=0.035 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCC-CCEEEEEcCCCCccHHHHHHc---------CCCeEEEEecChhHHHHHHHHHHh
Q 025059 18 EFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN 76 (258)
Q Consensus 18 ~~~k~~li~~~~~~-~~~VLDlGcG~G~~~~~~~~~---------~~~~v~gvD~s~~~l~~a~~~~~~ 76 (258)
+|+...+.....+. ..+|+|+|+|+|.++..+++. ...+++-+|+|+.+.+..++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 56665554444443 479999999999999888764 124899999999999988888765
No 310
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.07 E-value=0.95 Score=39.28 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=60.2
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh-hhcCCce
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~f 106 (258)
..++.+||..|+|. |..+..+++....++++++.++...+.+++. .+..+..+. +......+ ......+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~--------g~~~~~~~~-~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL--------GADEVLNSL-DDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh--------CCCEEEcCC-CcCHHHHHHHhcCCCc
Confidence 45778999988763 6666666665444799999999888777542 111111111 11111111 1134679
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+|+..... ...+..+.+.|+++|.++...
T Consensus 234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence 998653211 246777889999999998763
No 311
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.86 E-value=0.64 Score=42.46 Aligned_cols=125 Identities=13% Similarity=0.022 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059 32 YVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (258)
...++|+|.|.|...-.+... ....++.||.|..|+........+.... .-.++...+... ..++. ....||
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~-g~~~v~~~~~~r---~~~pi~~~~~yD 276 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHI-GEPIVRKLVFHR---QRLPIDIKNGYD 276 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhc-Cchhccccchhc---ccCCCCccccee
Confidence 467888888876443332222 2457999999999999887776551100 111111111111 11111 346699
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE---cCchHHHHHHHHhH
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT---PDSSTIWAKYQKNV 160 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~---~~~~~~~~~~~~~~ 160 (258)
+|+|.+.++..-.........-....+..++||.+++.- +.+-.+...-++++
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~~~ 332 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQNL 332 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHHhc
Confidence 999999998755545455566667778889999998883 33344444444443
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.23 E-value=0.47 Score=41.79 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+||=.|||. |..+.++++. +..+++++|.+++.++.+++.-. . .++ |..+..+..... ..+.+|
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~-~~g~~D 237 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA------D-KLV--NPQNDDLDHYKA-EKGYFD 237 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC------c-EEe--cCCcccHHHHhc-cCCCCC
Confidence 3688999898863 4444555554 45579999999988887765211 1 111 111112221111 224589
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+...+ . ...+....++|++||.++..
T Consensus 238 ~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 238 VSFEVSG------H----PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 9865432 1 23456677789999999876
No 313
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.77 E-value=0.5 Score=39.01 Aligned_cols=67 Identities=15% Similarity=-0.003 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (258)
..+-|.+||.|.|+.+..+...+.+++..++++...+.-.+--.+... .+..+.+.|+....+...+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~I~~~~ 116 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFKIEKAF 116 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceehHHhhc
Confidence 457899999999999999998888899999999888776554433222 2778888898765555444
No 314
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.63 E-value=0.3 Score=41.74 Aligned_cols=51 Identities=16% Similarity=-0.020 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHH
Q 025059 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~ 68 (258)
+.++..+-.+..-.+.+|||+|||.|-........+...+...|.+.+.++
T Consensus 103 ~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 103 PYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 444433323344478999999999998777777777668889999888773
No 315
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.60 E-value=0.31 Score=42.69 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=48.6
Q ss_pred EEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059 35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 35 VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
|+|+-||-|++...+...+..-+.++|+++.+.+.-+.+++. .+.++|+.+.... .-..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~-----~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPS-----DIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhh-----hCCCcCEEEecC
Confidence 689999999999999888886677899999988877666532 3456777654321 123579887654
No 316
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.49 E-value=1 Score=41.40 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh---hcCCce
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ---EKANQA 106 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~f 106 (258)
.+..+|=+|-|.|++...+... +..+++++.+.+.|++.|++.+.-.... +....-.|.. ++.+... ..+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl--~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGL--DFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhch--HHHHHHhhccccccCC
Confidence 4567888888989888777555 5579999999999999998866321100 2233333321 1211111 135688
Q ss_pred eEEEecc---ccccccCCH--HHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQ---HLQMCFETE--ERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~---~l~~~~~~~--~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|++...- -.|.+-... --...++..+...|.|-|.|++.
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 8885421 122211112 23578999999999999999887
No 317
>PTZ00357 methyltransferase; Provisional
Probab=91.30 E-value=0.73 Score=44.26 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=68.0
Q ss_pred CEEEEEcCCCCccHHHHHHc----CC-CeEEEEecChhHHHHHHHHHHh-cCC-------CceeEEEEcCCCCCchhh--
Q 025059 33 VTVCDLYCGAGVDVDKWETA----LI-ANYIGIDVATSGIGEARDTWEN-QRK-------NFIAEFFEADPCAENFET-- 97 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~----~~-~~v~gvD~s~~~l~~a~~~~~~-~~~-------~~~~~~~~~d~~~~~~~~-- 97 (258)
..|+=+|+|.|.+....++. +. -++++|+-++.++.....+... ..+ +.+++++..|+.......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999988776654 22 2899999997765555444322 122 336899999998743210
Q ss_pred -h--hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC----CcE
Q 025059 98 -Q--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP----GGY 141 (258)
Q Consensus 98 -~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp----gG~ 141 (258)
. .+..-+++|+|++-. |. .|..-+--.+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LG-SFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LG-SLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh-hc-ccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0 011124799998732 11 344455556777777777776 776
No 318
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=91.25 E-value=0.21 Score=47.01 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=58.0
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc----hhhhhhh
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN----FETQMQE 101 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~ 101 (258)
+++++..||||||.+|++++-.... + .+-|+|+|+-|-- ..+ ++.-.+.|+.... +...+
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p~~---~c~t~v~dIttd~cr~~l~k~l-- 106 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------PIP---NCDTLVEDITTDECRSKLRKIL-- 106 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------cCC---ccchhhhhhhHHHHHHHHHHHH--
Confidence 4568899999999999998877665 3 2479999986422 000 2333344443322 22222
Q ss_pred cCCceeEEEeccccc-------cccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 102 KANQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
...+.|+|+.-.+.. .++....-.-.++.-....|..||.|+--
T Consensus 107 ~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 107 KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 234557775433211 11111122234556666778899996544
No 319
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.93 E-value=2.2 Score=37.37 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhh--cCC
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KAN 104 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~--~~~ 104 (258)
+++.+||=+|+|+ |-.+..+++. +.++++.+|+++.-++.|++ +-- ............ .+.+.... ...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-----~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-----TVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-----eEEeeccccccHHHHHHHHHhhcccc
Confidence 4789999999997 4444444444 77899999999999999987 421 222111111111 11111111 124
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
.+|+++....++ ..++.....+++||.+++...
T Consensus 242 ~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 242 QPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred CCCeEEEccCch----------HHHHHHHHHhccCCEEEEecc
Confidence 588876544333 345555778999999776633
No 320
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=89.76 E-value=0.47 Score=36.58 Aligned_cols=104 Identities=15% Similarity=0.032 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
..-|||+|-|+|..-..+... +..+++.+|-.-.+-..+. -+ .-.++.+|+.+.- +.+..-..+.-++.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~--P~------~~~~ilGdi~~tl--~~~~~~g~~a~laH 98 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST--PP------EEDLILGDIRETL--PALARFGAGAALAH 98 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-----------GGGEEES-HHHHH--HHHHHH-S-EEEEE
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC--Cc------hHheeeccHHHHh--HHHHhcCCceEEEE
Confidence 356999999999876666554 5568999995422211110 00 2246666653211 11111233444454
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+-.+.++--.+......+-.-+..+|.|||+++-.
T Consensus 99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 44444431111122344455678899999988753
No 321
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.70 E-value=1.4 Score=39.38 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHH
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~ 72 (258)
+-..|+|+|.|.|.++..+.-...-.|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 446799999999998887766544489999999766666544
No 322
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.57 E-value=1.1 Score=39.55 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
..+++||-||-|++...+...++.-+.++|+++.+++.-+.+++. ..++..|+........ ....+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~---~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL---RKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc---cccCCCEEEe
Confidence 468999999999999999888887889999999998877666542 3566677654332111 1117899987
Q ss_pred ccccccc---------cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 112 FQHLQMC---------FETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 112 ~~~l~~~---------~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+-.... -+....+-.-+.++...++| -.|++.
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E 115 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE 115 (328)
T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence 6544310 11112233445566677788 344444
No 323
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.85 E-value=1.3 Score=41.53 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCC-ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-------------Cchh
Q 025059 31 PYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-------------ENFE 96 (258)
Q Consensus 31 ~~~~VLDlGcG~G-~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-------------~~~~ 96 (258)
++.+||=+|||.= ..+..++......++++|.+++.++.+++ + ..+++..|..+ .++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l-------Ga~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M-------GAEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-------CCeEEeccccccccccccceeecCHHHH
Confidence 5689999999974 44444555433479999999998777765 2 22333333211 0110
Q ss_pred ----hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059 97 ----TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (258)
Q Consensus 97 ----~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i 143 (258)
..+.+.-..+|+|+..-.+.. .+...-+.+++.+.+|||+.++
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence 001222457999977653322 2223346777888899998876
No 324
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.54 E-value=3.6 Score=39.44 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred CEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 33 ~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
.+|+=+|+|. |..+.+........++.+|.+++.++.+++. ....+.+|+.+....... .-++.|.|++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAA--GAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence 4566666665 3323232233333899999999998887642 456889999876543322 3457888776
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~ 153 (258)
.. .+.+.... +....+.+.|...++....+.....
T Consensus 471 ~~------~d~~~n~~-i~~~~r~~~p~~~IiaRa~~~~~~~ 505 (601)
T PRK03659 471 TC------NEPEDTMK-IVELCQQHFPHLHILARARGRVEAH 505 (601)
T ss_pred Ee------CCHHHHHH-HHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 43 33333333 4444556788888888766664433
No 325
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.10 E-value=5.9 Score=32.78 Aligned_cols=98 Identities=23% Similarity=0.201 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh-hhcCCcee
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~fD 107 (258)
.++.+||-.|+|. |..+..+++....++++++.++...+.+++... . .++ +.........+ ......+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~------~-~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA------D-HVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC------c-eec--cCCcCCHHHHHHHhcCCCCC
Confidence 5788999999986 555555655544689999999877776643210 1 111 11111111110 11246799
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+|+....- . ..+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~~------~----~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGG------P----ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCC------H----HHHHHHHHhcccCCEEEEEc
Confidence 99764321 1 34666778889999998763
No 326
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.96 E-value=2.9 Score=36.78 Aligned_cols=92 Identities=5% Similarity=-0.082 Sum_probs=56.0
Q ss_pred cCCCCEEEEEcCCCCc-cHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059 29 SHPYVTVCDLYCGAGV-DVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~G~-~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (258)
.+++.+||=+|||.=+ .+..+++. +..+++++|.+++-++.|++ . ..... .+ .+. ....
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~-------~~~~~-~~----~~~-----~~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A-------DETYL-ID----DIP-----EDLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c-------Cceee-hh----hhh-----hccC
Confidence 3578999999987633 34455543 44589999999887777753 1 11111 11 110 1224
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+-.-+-. .....+....++|++||.+++.
T Consensus 223 ~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 223 VDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence 88886543210 0234677788899999998866
No 327
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.72 E-value=3.6 Score=35.03 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcC------CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETAL------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (258)
.+...++|+|||+|.++..++... ...++.||-...-.. +-.+.........+.-+..|+.+..+........
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~~~~ 95 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLDLSKLPELQN 95 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccchhhcccccC
Confidence 467899999999999888876642 347999997553322 2222322221124666777777766644332111
Q ss_pred CceeEEEeccccccccCCHHHHHHHHHHHHhc-------ccCCcEEEEEEcCc
Q 025059 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSL-------LKPGGYFLGITPDS 149 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~-------LkpgG~~i~~~~~~ 149 (258)
..-.+|.+.- | +.... .+.+|+-+.+. .+..|++|.+...+
T Consensus 96 ~~~~vv~isK--H-LCG~A--TDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH 143 (259)
T PF05206_consen 96 DEKPVVAISK--H-LCGAA--TDLALRCLLNSQKLSEGNGSVRGIVIAPCCHH 143 (259)
T ss_pred CCCcEEEEEc--c-ccccc--hhHHHHhhccCccccccCCccCeEEEEeCCCC
Confidence 2222333222 2 11111 22334433333 34689888885444
No 328
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.27 E-value=6.2 Score=38.06 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=64.4
Q ss_pred CCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 32 YVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 32 ~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
..+|+=+|||. |..+...... +. .++.+|.+++.++.+++. ....+.+|..+....... .-++.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA--GAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhc--CCCcCCEE
Confidence 35788888886 4433333333 44 899999999998888642 456789999876543221 34578888
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~ 151 (258)
++.. .+.+ ....+....+.+.|+-.++....+...
T Consensus 469 vv~~------~d~~-~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 469 INAI------DDPQ-TSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred EEEe------CCHH-HHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 7643 2333 333444455556788777776666544
No 329
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.23 E-value=13 Score=30.23 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=44.6
Q ss_pred CCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh-------------------hHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 32 YVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 32 ~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
..+||=+|||. |. .+..++..+.++++.+|.+. .-.+.+.+++.......++..+...+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i 100 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV 100 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC
Confidence 57899999995 43 34445555888999999762 22344455555443333444444444
Q ss_pred CCCchhhhhhhcCCceeEEEecc
Q 025059 91 CAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
....+.. .-..+|+|+...
T Consensus 101 ~~~~~~~----~~~~~D~Vi~~~ 119 (202)
T TIGR02356 101 TAENLEL----LINNVDLVLDCT 119 (202)
T ss_pred CHHHHHH----HHhCCCEEEECC
Confidence 3222211 135799997753
No 330
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.97 E-value=4.8 Score=35.79 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=56.1
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
.+++.+||=.|+|. |..+..+++. +...++++|.++..++.+++.-. . .++. ..+..+...+.. ..+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga------~-~~i~--~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA------T-ATVN--AGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC------c-eEeC--CCchhHHHHHHHHhCCC
Confidence 45788888898764 4444555554 44469999999988887754210 1 1111 111112111111 2236
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+-.-. . ...+....++|+++|.++..
T Consensus 260 ~d~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 260 VDYAFEMAG------S----VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCEEEECCC------C----hHHHHHHHHHHhcCCEEEEE
Confidence 899865321 1 13455667789999998865
No 331
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.92 E-value=2.3 Score=39.43 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 93 (258)
..+++|+-||-|++...+...+..-+.++|+++.+.+.-+.++.... ....+..|+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p---~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP---ATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC---ccceeccChhhC
Confidence 46999999999999999988787678899999887776555542111 223445666543
No 332
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.83 E-value=5.5 Score=35.14 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEec---ChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDV---ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (258)
.++.+||=+|+|. |..+.++++....++++++. ++.-++.+++. .+..+ +..+....+ .. ..+.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~--------Ga~~v--~~~~~~~~~-~~-~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL--------GATYV--NSSKTPVAE-VK-LVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc--------CCEEe--cCCccchhh-hh-hcCC
Confidence 4788999999874 45555555553338999987 55555555421 22222 211111111 11 2346
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+-..+ ....+....++|++||.+++.
T Consensus 239 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 239 FDLIIEATG----------VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCEEEECcC----------CHHHHHHHHHHccCCcEEEEE
Confidence 898866432 113567778899999998765
No 333
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.66 E-value=7.5 Score=33.67 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc----hhhhhhhcC
Q 025059 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN----FETQMQEKA 103 (258)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~ 103 (258)
.|..||==|.|.|- .+..+++.+. .++..|++++..++..+.....+ ++....+|+.+.. ....+.+.-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57889988888872 2334444455 89999999999998888777653 7888999997632 112233456
Q ss_pred CceeEEEeccccc
Q 025059 104 NQADLVCCFQHLQ 116 (258)
Q Consensus 104 ~~fD~V~~~~~l~ 116 (258)
+..|+++.+.++.
T Consensus 113 G~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 113 GDVDILVNNAGIV 125 (300)
T ss_pred CCceEEEeccccc
Confidence 8899999887653
No 334
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.20 E-value=2.2 Score=38.44 Aligned_cols=45 Identities=11% Similarity=0.010 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHH
Q 025059 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~ 75 (258)
.|+.+||-|++| |..+..++..++.+|++||+|+..+...+-+..
T Consensus 34 ~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 488999999755 555666667777799999999998876655543
No 335
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.75 E-value=7.3 Score=34.40 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=56.3
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
..++.+||=.|||. |..+..+++. +..+++++|.++..++.+++. .. . .++ |..+......+.. ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga-----~-~~i--~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA-----T-HTV--NSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC-----c-eEE--cCCCcCHHHHHHHHhCCC
Confidence 45789999998764 4444555555 444699999998888877532 11 1 112 1111122111111 224
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+|+|+-.-+ .. ..+....+.+++||.+++.
T Consensus 245 g~d~vid~~g------~~----~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVIDAVG------RP----ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEECCC------CH----HHHHHHHHHhccCCEEEEE
Confidence 6898865331 11 2455566789999999876
No 336
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=85.71 E-value=0.8 Score=41.42 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=50.5
Q ss_pred hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCce-eEEEEcCC
Q 025059 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADP 90 (258)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~ 90 (258)
..++|..|-|+.||-|-++..++..+ .+|++-|.++++++..+...+-+..... +..+..|+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 56789999999999999999887777 5999999999999999888766543333 66666664
No 337
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.04 E-value=8.5 Score=33.66 Aligned_cols=90 Identities=13% Similarity=-0.056 Sum_probs=54.0
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.+++.+||=.|+|. |..+..+++....++++++.+++-++.|++.- ++.+ .|..+ . ..+.+|
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~G--------a~~v-i~~~~--~------~~~~~d 225 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALG--------AASA-GGAYD--T------PPEPLD 225 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhC--------Ccee-ccccc--c------Ccccce
Confidence 45789999999764 33444455543347999999988877775531 1111 11111 0 123578
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+++..-. . ...+....++|++||.+++.
T Consensus 226 ~~i~~~~-------~---~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAILFAP-------A---GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEECCC-------c---HHHHHHHHHhhCCCcEEEEE
Confidence 6643221 1 13577788899999999876
No 338
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.93 E-value=9.9 Score=36.06 Aligned_cols=100 Identities=10% Similarity=0.004 Sum_probs=57.8
Q ss_pred CEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 33 ~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
.+|+=+|||. |..+.+........++.+|.+++.++.+++. ....+++|..+....... .-+++|.|++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a--~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA--HLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence 4567777775 3333222222223899999999988877642 467899999875543222 3357886654
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
.- .+......+... .+.+.|+..++....+.
T Consensus 488 ~~------~~~~~~~~iv~~-~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 488 TI------PNGYEAGEIVAS-AREKRPDIEIIARAHYD 518 (558)
T ss_pred Ec------CChHHHHHHHHH-HHHHCCCCeEEEEECCH
Confidence 32 122222233333 45557777777665443
No 339
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.80 E-value=19 Score=29.60 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh------------------hHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 31 PYVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT------------------SGIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~------------------~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
...+|+=+|||. |. .+..++..+..+++.+|.+. .-.+.+.+++.......+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 457899999994 43 44555556888899998772 22334455554443333444444444
Q ss_pred CCCchhhhhhhcCCceeEEEec
Q 025059 91 CAENFETQMQEKANQADLVCCF 112 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~ 112 (258)
......+. -..+|+|+..
T Consensus 107 ~~~~~~~~----~~~~DvVI~a 124 (212)
T PRK08644 107 DEDNIEEL----FKDCDIVVEA 124 (212)
T ss_pred CHHHHHHH----HcCCCEEEEC
Confidence 33222111 2468888754
No 340
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=84.60 E-value=3.3 Score=30.57 Aligned_cols=84 Identities=21% Similarity=0.293 Sum_probs=53.4
Q ss_pred CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCceeEEEeccccccccC
Q 025059 43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMCFE 120 (258)
Q Consensus 43 G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~fD~V~~~~~l~~~~~ 120 (258)
|..+..+++....+++++|.++.-++.+++.-. ..++..+ +..+.+.+.+ +...+|+|+-.-+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~~--~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDYS--DDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEETT--TSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------ccccccc--ccccccccccccccccceEEEEecC------
Confidence 555666666633799999999998888865321 1222222 2223333322 2347999976442
Q ss_pred CHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 121 TEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 121 ~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
....+.....+|+++|.+++.
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHhccCCEEEEE
Confidence 135777788899999999887
No 341
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.59 E-value=20 Score=29.17 Aligned_cols=109 Identities=9% Similarity=-0.071 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh-h---hhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~---~~~~ 103 (258)
+.+||=.|++.| ....+ ...+. +|++++-++..++...+...... ++.++.+|+.+..-... + ....
T Consensus 5 ~~~vlItGa~g~-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 5 GKKVAIIGVSEG-LGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 568899987643 23322 23355 89999998877766544443321 57888999876431111 1 1112
Q ss_pred CceeEEEeccccccc--cCCHH-----------HHHHHHHHHHhcccCCcEEEEE
Q 025059 104 NQADLVCCFQHLQMC--FETEE-----------RARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~--~~~~~-----------~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..|.++...+.... +...+ ....+++.+...++++|.++++
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 456877665432110 00011 1123355556667778877766
No 342
>PRK11524 putative methyltransferase; Provisional
Probab=84.25 E-value=1.3 Score=38.21 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=36.8
Q ss_pred eEEEEcCCCCCchhhhhhhcCCceeEEEec--cccc--cc-----cC---CHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 83 AEFFEADPCAENFETQMQEKANQADLVCCF--QHLQ--MC-----FE---TEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~--~~l~--~~-----~~---~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
..++++|+.+ +...+ +++++|+|++. +... +. .. ...-+...+.++.++|||||.+++..
T Consensus 9 ~~i~~gD~~~--~l~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALT--ELKKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHH--HHHhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4677788743 11122 46789998884 2210 00 00 01224678999999999999998863
No 343
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=82.88 E-value=4.4 Score=34.76 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=44.2
Q ss_pred HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (258)
Q Consensus 23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 77 (258)
.+|..+..++..|||.=+|+|..+......+- .++|+|+++..++.+.+|+...
T Consensus 214 r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 214 RLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 34444777999999999999987766655554 8999999999999999998754
No 344
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.61 E-value=10 Score=31.54 Aligned_cols=82 Identities=9% Similarity=-0.049 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch----hhhhhh-
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQE- 101 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~- 101 (258)
....||=.||..|+....++.. ++ +|+++--+-+-........ +......|+.++.- .+.+.+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhC
Confidence 3468999999999987777654 44 7888765543333222221 45566777765431 112222
Q ss_pred cCCceeEEEeccccccccC
Q 025059 102 KANQADLVCCFQHLQMCFE 120 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~ 120 (258)
++++.|+.+.+.+..+.+.
T Consensus 78 ~~Gkld~L~NNAG~~C~~P 96 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQSCTFP 96 (289)
T ss_pred CCCceEEEEcCCCCCcccc
Confidence 7889999887766655433
No 345
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.56 E-value=4.3 Score=35.35 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
++.+||-.|||. |..+..+++. +...+++++.++...+.+++. .. . .++.. ....+.. .....+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~-----~-~vi~~--~~~~~~~-~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA-----D-ETVNL--ARDPLAA-YAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC-----C-EEEcC--Cchhhhh-hhccCCCccE
Confidence 688899988875 5555555555 444789999988887755442 11 1 12211 1111111 1112245899
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
|+..... ...+..+.+.|+++|.++...
T Consensus 235 vld~~g~----------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASGA----------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence 9754321 234677788999999998653
No 346
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=82.55 E-value=1.5 Score=44.83 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
+..+||+|+|.-.=...+.- ....++.+|+-+-+- ....+.....|+++|-....+. ....+|.++|
T Consensus 823 ~~~~lDLGTGPE~RiLsliP-~~~pvtmvD~RP~ae-------~m~~w~t~T~y~~~DYl~~~~~-----~~~~~D~vta 889 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIP-PDTPVTMVDTRPFAE-------PMNCWNTQTQYIQADYLSDAWW-----NGTPFDAVTA 889 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS--TTSEEEEEESS--SS-------SCCCCSTTEEEEES-TTSCCGG-----CC---SEEEE
T ss_pred cceEEEccCCccceeeeccC-CCCceEEEecCCccc-------ccchhhhcceeeeeccccceeE-----ecCCCCEEEE
Confidence 57899999888632222211 234799999865431 1122334679999998776654 4678999999
Q ss_pred ccccccccC-CHHHHHHHHHHHHhcccCCcE
Q 025059 112 FQHLQMCFE-TEERARRLLQNVSSLLKPGGY 141 (258)
Q Consensus 112 ~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~ 141 (258)
.+.|..++- ..-.+.+.++++.+.+++.|.
T Consensus 890 ilSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 890 ILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp CTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred EeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 998864321 223577888888888888776
No 347
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.41 E-value=14 Score=32.57 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=58.7
Q ss_pred cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
..++.+||=.|+ | -|..+.++++....++++++.+++..+.+++.+.. . ..+..+ ....+...+.. ..+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa-----~-~vi~~~-~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF-----D-EAFNYK-EEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC-----C-EEEECC-CcccHHHHHHHHCCCC
Confidence 457899999998 3 56666777766444899999888877766533311 1 112111 01112221111 1246
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+...+ ...+..+.++|++||.++..
T Consensus 229 vD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence 898865331 13567778899999999865
No 348
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.82 E-value=18 Score=31.51 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=54.4
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
..++.+||=+|+|. |..+..+++. +..+++++|.+++.++.+++.- . . .++ |..+......... ....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~g-a-----~-~~i--~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALG-A-----D-FVI--NSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-C-----C-EEE--cCCcchHHHHHHHhCCCC
Confidence 34788999998763 3333444444 4434999999988877764321 1 1 111 1111111111110 2347
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+.... -...+....+.|+++|.+++.
T Consensus 232 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAIECSG----------NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 999975331 112445666789999999866
No 349
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.81 E-value=6.2 Score=35.99 Aligned_cols=87 Identities=14% Similarity=0.022 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|+=+|||. |..+...++....+++.+|+++.-++.|+.- .+... +. .+. -..+|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~--------G~~~~--~~-----~e~----v~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME--------GYEVM--TM-----EEA----VKEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc--------CCEEc--cH-----HHH----HcCCCEE
Confidence 789999999997 4444444444333899999998877766532 11111 11 111 1357999
Q ss_pred EeccccccccCCHHHHHHHHH-HHHhcccCCcEEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGIT 146 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~-~i~~~LkpgG~~i~~~ 146 (258)
+..-+. ..++. ...+.+++||+++...
T Consensus 262 I~atG~----------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTGN----------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCCC----------HHHHHHHHHhcCCCCcEEEEeC
Confidence 764321 12333 4578999999997763
No 350
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.57 E-value=13 Score=32.11 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+||-+|+|. |..+..+++. +...+++++.+++..+.+++.- . . .++..+ +.............+|
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g----~--~-~~~~~~--~~~~~~~~~~~~~~vd 228 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG----A--T-ETVDPS--REDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC----C--e-EEecCC--CCCHHHHHHhcCCCCc
Confidence 4788999998653 4455555555 4434889999988877764321 0 1 122211 1111110111345789
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+.... ....+..+.++|+++|.++..
T Consensus 229 ~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG----------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC----------ChHHHHHHHHHHhcCCEEEEE
Confidence 9975421 124566678889999999865
No 351
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=81.32 E-value=7.7 Score=32.99 Aligned_cols=97 Identities=18% Similarity=0.068 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+||=+|+|. |..+..+++. +...++++|.++.-++.+++.-. . ..+..+-....+.. .. ....+|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga------~-~~i~~~~~~~~~~~-~~-~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA------T-ALAEPEVLAERQGG-LQ-NGRGVD 189 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------c-EecCchhhHHHHHH-Hh-CCCCCC
Confidence 3788999998864 3344445444 55459999998887776654211 1 11111100000100 10 234689
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+-..+ ....+....++|+++|.++..
T Consensus 190 ~vid~~G----------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 190 VALEFSG----------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEECCC----------ChHHHHHHHHHhcCCCEEEEe
Confidence 9865321 123566677889999999876
No 352
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=81.29 E-value=23 Score=29.94 Aligned_cols=106 Identities=12% Similarity=0.032 Sum_probs=57.0
Q ss_pred CEEEEEcCCCCccHHHHHH---c---CCCeEEEEecCh--------------------------hHHHHHHHHHHhcCC-
Q 025059 33 VTVCDLYCGAGVDVDKWET---A---LIANYIGIDVAT--------------------------SGIGEARDTWENQRK- 79 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~---~---~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~~- 79 (258)
..|+|+||-.|+.+..+.. . ...+++++|.=+ ..++..++++...+.
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 5799999999986654422 1 234688887311 123334443333221
Q ss_pred CceeEEEEcCCCCCchhhhhhh-cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 80 NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 80 ~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
..++.++.+.+. +.++. +..++-++.+- .+--+....+|..+...|.|||++++.-.+.
T Consensus 156 ~~~v~~vkG~F~-----dTLp~~p~~~IAll~lD------~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 156 DDNVRFVKGWFP-----DTLPDAPIERIALLHLD------CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp STTEEEEES-HH-----HHCCC-TT--EEEEEE---------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccEEEECCcch-----hhhccCCCccEEEEEEe------ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 236888888742 22211 22333333221 2334667899999999999999999985554
No 353
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.04 E-value=25 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=21.9
Q ss_pred EEEEEcCCC-Ccc-HHHHHHcCCCeEEEEecCh
Q 025059 34 TVCDLYCGA-GVD-VDKWETALIANYIGIDVAT 64 (258)
Q Consensus 34 ~VLDlGcG~-G~~-~~~~~~~~~~~v~gvD~s~ 64 (258)
+|+=+|||. |.. +..+++.+.++++-+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899984 543 4445556888899998775
No 354
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.96 E-value=3.5 Score=37.20 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=48.0
Q ss_pred eeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
++.++++++.+ ..... +++++|.++.+-.+-| -+.+.+.+.++.+.+.++|||.++.-...
T Consensus 276 rv~i~t~si~~--~L~~~--~~~s~~~~vL~D~~Dw--m~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 276 RVRIHTDSIEE--VLRRL--PPGSFDRFVLSDHMDW--MDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred eEEEEeccHHH--HHHhC--CCCCeeEEEecchhhh--CCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 78888888643 11111 5799999999888877 46788999999999999999999987443
No 355
>PRK08267 short chain dehydrogenase; Provisional
Probab=80.26 E-value=32 Score=28.49 Aligned_cols=77 Identities=8% Similarity=-0.053 Sum_probs=46.6
Q ss_pred EEEEEcCCCC--c-cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-hhh---hhc-CCc
Q 025059 34 TVCDLYCGAG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQM---QEK-ANQ 105 (258)
Q Consensus 34 ~VLDlGcG~G--~-~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~---~~~-~~~ 105 (258)
+||=.|++.| . .+..++..+. +|+.++.++..++........ .++.++++|+.+..-. ..+ ... .++
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5777776543 1 2233334454 899999988877766554432 2678999999764321 111 111 467
Q ss_pred eeEEEecccc
Q 025059 106 ADLVCCFQHL 115 (258)
Q Consensus 106 fD~V~~~~~l 115 (258)
.|+|+...+.
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 8998876654
No 356
>PLN02740 Alcohol dehydrogenase-like
Probab=79.51 E-value=15 Score=32.77 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=55.5
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
.+++.+||=+|||. |..+..+++. +..+++++|.+++.++.+++. + .. .++...-.+.++...+.. ..+.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G--a~-~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G--IT-DFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C--Cc-EEEecccccchHHHHHHHHhCCC
Confidence 45788999999864 4444445554 444699999999888877542 1 01 122211111112211111 1236
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~ 145 (258)
+|+|+-.-+ . ...+......+++| |.+++.
T Consensus 269 ~dvvid~~G------~----~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 269 VDYSFECAG------N----VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCEEEECCC------C----hHHHHHHHHhhhcCCCEEEEE
Confidence 999876432 1 13455666678886 887665
No 357
>PRK06701 short chain dehydrogenase; Provisional
Probab=79.40 E-value=38 Score=28.95 Aligned_cols=110 Identities=11% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChh-HHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhc
Q 025059 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATS-GIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK 102 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~ 102 (258)
+.+||=.|++.| .... +++.+. +++.++.++. .++......... +.++.++.+|+.+..-... ....
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 568888886654 3333 333454 7888887753 333333333322 2267889999876432111 1112
Q ss_pred CCceeEEEeccccccc---c--CCH-----------HHHHHHHHHHHhcccCCcEEEEE
Q 025059 103 ANQADLVCCFQHLQMC---F--ETE-----------ERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 103 ~~~fD~V~~~~~l~~~---~--~~~-----------~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+..|+|+...+.... + .+. .....+++.+...++++|.++.+
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 3568988765443110 0 111 12344455666666777777765
No 358
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.34 E-value=13 Score=27.48 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=53.9
Q ss_pred CEEEEEcCCCCccHHHHHH-cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 33 VTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
.+|.|+|-|-=....+.++ .++ .++++|+.+. +.+ . .+.++.-|+++..+. --...|+|.+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~-~----g~~~v~DDitnP~~~-----iY~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP-E----GLRFVVDDITNPNIS-----IYEGADLIYS 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc-c----cceEEEccCCCccHH-----HhhCccceee
Confidence 4899999987655544444 465 8999999876 111 2 578999999886652 1245677754
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCC
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPG 139 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~Lkpg 139 (258)
. ...+++...+-.+++.++-.
T Consensus 77 i-------RpppEl~~~ildva~aVga~ 97 (129)
T COG1255 77 I-------RPPPELQSAILDVAKAVGAP 97 (129)
T ss_pred c-------CCCHHHHHHHHHHHHhhCCC
Confidence 3 34566667777777766543
No 359
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=79.22 E-value=28 Score=28.29 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCEEEEEcCCC-C-ccHHHHHHcCCCeEEEEecC---hhHHHH---------------HHHHHHhcCCCceeEEEEcCCC
Q 025059 32 YVTVCDLYCGA-G-VDVDKWETALIANYIGIDVA---TSGIGE---------------ARDTWENQRKNFIAEFFEADPC 91 (258)
Q Consensus 32 ~~~VLDlGcG~-G-~~~~~~~~~~~~~v~gvD~s---~~~l~~---------------a~~~~~~~~~~~~~~~~~~d~~ 91 (258)
..+|+=+|||. | ..+..+++.+.++++.+|.+ +..+.. +++++.......++..+..++.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~ 100 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKIT 100 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCC
Confidence 47899999995 3 33455555688889999987 333321 2233333222223444444443
Q ss_pred CCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC
Q 025059 92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138 (258)
Q Consensus 92 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 138 (258)
...+.+. -..+|+|+... ++.+....++..+.+.++.
T Consensus 101 ~~~~~~~----~~~~DlVi~a~------Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 101 EENIDKF----FKDADIVCEAF------DNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred HhHHHHH----hcCCCEEEECC------CCHHHHHHHHHHHHHHcCC
Confidence 3332211 24689887642 4455555566677766654
No 360
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.90 E-value=43 Score=29.12 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCC--CceeEEEEcCCCCCchhhhhhh---cCCc
Q 025059 33 VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQE---KANQ 105 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~---~~~~ 105 (258)
..|+-||||- ++..+.-... ..+.-+|. |+.++.-++.+++.+. .....++..|+.+....+.+.. ....
T Consensus 94 ~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 94 RQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 6799999985 4444422222 35666664 5666665566665431 1257899999986554444431 1345
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
.-++++-..+.| .+.+...+++..|.....||..++....
T Consensus 171 pt~~iaEGLl~Y--L~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 171 PTLWIAEGLLMY--LPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CeEEEecccccc--CCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 556777777777 5688899999999999999999988865
No 361
>PRK13699 putative methylase; Provisional
Probab=78.83 E-value=2.6 Score=35.07 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcccCCcEEEEE
Q 025059 123 ERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 123 ~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+-....+.++.++|||||.+++.
T Consensus 49 ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 49 EWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEE
Confidence 33568899999999999988764
No 362
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=77.56 E-value=26 Score=30.26 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
.+++.+||=.|. |-|..+.++++....++++++.+++..+.+++ +.. . .++..+-. ..+...... ..+.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa-----~-~vi~~~~~-~~~~~~~~~~~~~g 207 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGF-----D-VAFNYKTV-KSLEETLKKASPDG 207 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC-----C-EEEecccc-ccHHHHHHHhCCCC
Confidence 457889998884 35666667766644489999988887777643 211 1 11111110 111111111 2346
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+...+ . ..+....++|+++|.++..
T Consensus 208 vdvv~d~~G-------~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 208 YDCYFDNVG-------G----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred eEEEEECCC-------H----HHHHHHHHHhCcCcEEEEe
Confidence 899865321 1 2346778899999999865
No 363
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.02 E-value=27 Score=31.87 Aligned_cols=95 Identities=9% Similarity=0.031 Sum_probs=54.3
Q ss_pred EEEEEcCCCCccHHHHHH---cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 34 TVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
+|+=+|||. ....++. .....++.+|.+++.++.+++.. .+.++.+|..+....... .-..+|.|+
T Consensus 2 ~viIiG~G~--ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~--~~~~a~~vi 70 (453)
T PRK09496 2 KIIIVGAGQ--VGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREA--GAEDADLLI 70 (453)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHc--CCCcCCEEE
Confidence 566677753 4444433 22338999999998877665421 467788888654322111 235788876
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
+... .......+..+.+.+.|.-.++..+
T Consensus 71 ~~~~-------~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 71 AVTD-------SDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EecC-------ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 6431 2234444555566665555555554
No 364
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=76.56 E-value=10 Score=32.82 Aligned_cols=85 Identities=13% Similarity=0.010 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
++.+||=+|||. |..+..+++. +...+.++|.++..++.|... .. .|..+. ....+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----------~~--i~~~~~--------~~~g~Dv 203 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----------EV--LDPEKD--------PRRDYRA 203 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----------cc--cChhhc--------cCCCCCE
Confidence 567888888874 5555666655 554577889887766655421 01 111000 1246898
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+-.-+- ...+..+.++|+++|.+++.
T Consensus 204 vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 204 IYDASGD----------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence 8654321 23456677899999999876
No 365
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.14 E-value=29 Score=28.80 Aligned_cols=82 Identities=9% Similarity=-0.110 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCCccHH----HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-h---hhhhcC
Q 025059 32 YVTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-T---QMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~----~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~ 103 (258)
+.+||=.|++.| ... .++..+. +++.+|.++..++...+.+.....+.++.++.+|+.+..-. . ......
T Consensus 7 ~k~vlVtGas~g-IG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQG-IGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567888887654 333 3333455 89999999888877766665421223678899998764311 1 111234
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+++.+.+.
T Consensus 85 g~id~li~~ag~ 96 (260)
T PRK07063 85 GPLDVLVNNAGI 96 (260)
T ss_pred CCCcEEEECCCc
Confidence 678998876553
No 366
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.58 E-value=25 Score=30.62 Aligned_cols=94 Identities=11% Similarity=-0.006 Sum_probs=55.1
Q ss_pred CEEEEEcC--CCCccHHHHHHcCCC-eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCceeE
Q 025059 33 VTVCDLYC--GAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADL 108 (258)
Q Consensus 33 ~~VLDlGc--G~G~~~~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~ 108 (258)
.+||=.|+ |-|..+.++++.... ++++++.+++..+.+++.+.. . .++.. .+..+...+.. ..+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-----~-~vi~~--~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-----D-AAINY--KTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-----c-EEEEC--CCCCHHHHHHHHCCCCceE
Confidence 78988886 356666666666333 799999988877766554321 1 12211 11222222111 2356899
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+.... . ..+..+.++|+++|.++..
T Consensus 228 vid~~g-------~----~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG-------G----EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC-------c----HHHHHHHHHhccCCEEEEE
Confidence 875331 1 1246677899999999865
No 367
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=75.01 E-value=32 Score=28.43 Aligned_cols=78 Identities=18% Similarity=0.080 Sum_probs=43.1
Q ss_pred CCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecC-------------------hhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 32 YVTVCDLYCGA-GV-DVDKWETALIANYIGIDVA-------------------TSGIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 32 ~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s-------------------~~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
..+|+=+|||. |. .+..++..+.++++.+|.+ ..-.+.+++++.......++..+...+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i 100 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEeccee
Confidence 57899999994 43 3344455587888888543 333445555555544333445444444
Q ss_pred CCCchhhhhhhcCCceeEEEecc
Q 025059 91 CAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
....+.+. -..+|+|++..
T Consensus 101 ~~~~~~~~----~~~~DvVi~~~ 119 (228)
T cd00757 101 DAENAEEL----IAGYDLVLDCT 119 (228)
T ss_pred CHHHHHHH----HhCCCEEEEcC
Confidence 22222111 24588887643
No 368
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=74.93 E-value=18 Score=35.06 Aligned_cols=119 Identities=12% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCCccHHHHHHc--------C-----CCeEEEEecCh---hHHHHHHHHHH-----------h---cCCC
Q 025059 31 PYVTVCDLYCGAGVDVDKWETA--------L-----IANYIGIDVAT---SGIGEARDTWE-----------N---QRKN 80 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~--------~-----~~~v~gvD~s~---~~l~~a~~~~~-----------~---~~~~ 80 (258)
+..+|||+|-|+|.+....... . .-++++++.-+ +.+..+.+.++ . ...+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4579999999999765444321 1 12788888644 33333322111 0 0001
Q ss_pred ----------ceeEEEEcCCCCCchhhhhhhcCCceeEEEec-cccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 81 ----------FIAEFFEADPCAENFETQMQEKANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 81 ----------~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
...++..+|+.+ .++.-...+|++..- |+... .+.---..++..++++++|||.+.-- ...
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~-----~~~~~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t~-t~a 208 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANE-----LLPQLDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLATF-TSA 208 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHH-----HHHhccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEEe-ehH
Confidence 133455566432 222123568999653 22211 11112378999999999999988633 333
Q ss_pred hHHHHHHH
Q 025059 150 STIWAKYQ 157 (258)
Q Consensus 150 ~~~~~~~~ 157 (258)
..+.+.+.
T Consensus 209 ~~vr~~l~ 216 (662)
T PRK01747 209 GFVRRGLQ 216 (662)
T ss_pred HHHHHHHH
Confidence 34444333
No 369
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=74.87 E-value=31 Score=29.90 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=55.2
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
.+++.+||-.|+|. |..+..+++. +...+++++.++...+.+++.- . ..++.. .+..+...+.. ..+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~--~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINP--KNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcC--CcchHHHHHHHHcCCC
Confidence 34778899887653 5555555555 3347888888877766554321 0 112111 11122221111 235
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+|+|+....- ...+..+.+.|+++|.++..
T Consensus 236 ~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGF----------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 78988753211 13567777899999998765
No 370
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=74.81 E-value=10 Score=29.55 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=55.7
Q ss_pred EEEEEcCCCC--ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 34 TVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 34 ~VLDlGcG~G--~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
+|-=||+|.= ..+..+...+. .+++.|.+++..+...+. . ....+- ..+. -...|+|++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g--~~~~~s----~~e~----~~~~dvvi~ 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------G--AEVADS----PAEA----AEQADVVIL 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------T--EEEESS----HHHH----HHHBSEEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------h--hhhhhh----hhhH----hhcccceEe
Confidence 3445677642 23344444566 899999998776655433 1 122221 1111 134588876
Q ss_pred ccccccccCCHHHHHHHHHH--HHhcccCCcEEEEEEcCchHHHHHHHHh
Q 025059 112 FQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~--i~~~LkpgG~~i~~~~~~~~~~~~~~~~ 159 (258)
. +.+.+..+.++.. +...|++|.+++-.....+.......+.
T Consensus 64 ~------v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~ 107 (163)
T PF03446_consen 64 C------VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAER 107 (163)
T ss_dssp -------SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHH
T ss_pred e------cccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhh
Confidence 3 3456778888888 9999999988877655554444444443
No 371
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.79 E-value=43 Score=28.83 Aligned_cols=95 Identities=20% Similarity=0.134 Sum_probs=56.0
Q ss_pred cCCCCEEEEEcCC-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
..++.+||-.||| -|..+..+++....++++++.+++.++.+++ ... . .++... ....... ..+.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~-----~-~~~~~~--~~~~~~~---~~~~~d 227 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-LGA-----D-EVVDSG--AELDEQA---AAGGAD 227 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hCC-----c-EEeccC--CcchHHh---ccCCCC
Confidence 4577889999886 4555555555533489999999888777643 211 1 111111 1111100 124688
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+.... ....+..+.+.|+++|.++..
T Consensus 228 ~vi~~~~----------~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 228 VILVTVV----------SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEEECCC----------cHHHHHHHHHhcccCCEEEEE
Confidence 8865421 113566778899999999876
No 372
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.69 E-value=49 Score=27.57 Aligned_cols=76 Identities=8% Similarity=-0.069 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-h---hhhhcC
Q 025059 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-T---QMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~ 103 (258)
+.++|=.|++.| .... ++..+. +|+.+|.+++.++...+.. +.++.++.+|+.+..-. . ......
T Consensus 6 ~k~vlItGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATL-IGAAVARALVAAGA-RVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 467887876544 3333 333455 8999999876655544333 12678899999764311 1 111123
Q ss_pred CceeEEEeccc
Q 025059 104 NQADLVCCFQH 114 (258)
Q Consensus 104 ~~fD~V~~~~~ 114 (258)
+..|+++.+.+
T Consensus 79 g~id~lv~~ag 89 (261)
T PRK08265 79 GRVDILVNLAC 89 (261)
T ss_pred CCCCEEEECCC
Confidence 57898877654
No 373
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=74.16 E-value=31 Score=29.61 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-hcCCc
Q 025059 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~ 105 (258)
..++.+||=.|. |-|..+..+++....++++++.+++..+.+++ +.. . .++.. ....+...+. ...+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga-----~-~vi~~--~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGF-----D-AVFNY--KTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC-----C-EEEeC--CCccHHHHHHHHCCCC
Confidence 457889988874 34566666666644489999988887777754 211 1 12211 1122222111 12356
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+...+ ...+....++|+++|.++..
T Consensus 212 vd~vld~~g-----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-----------HHHHHHHHHhhccCCEEEEE
Confidence 898865321 13467778889999998765
No 374
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=74.10 E-value=11 Score=33.09 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=32.5
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHH
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARD 72 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~ 72 (258)
..++.+||=+|||. |..+..+++....+++++|.+++.++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 45789999999965 555555655533379999999988887754
No 375
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=73.98 E-value=36 Score=30.76 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=57.0
Q ss_pred cCCCCEEEEEc-CC-CCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-Cchhhhhhh-
Q 025059 29 SHPYVTVCDLY-CG-AGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE- 101 (258)
Q Consensus 29 ~~~~~~VLDlG-cG-~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~- 101 (258)
.+++.+||=+| +| -|..+..+++. +..+++++|.++..++.+++.+........+.....|..+ ..+...+..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 35778888887 45 35555556555 2347999999999998887653211000011111112111 112221111
Q ss_pred -cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 102 -KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 102 -~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
....+|+|+..-+ . ...+....++++++|.+++.
T Consensus 253 t~g~g~D~vid~~g------~----~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP------V----PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC------C----HHHHHHHHHHhccCCeEEEE
Confidence 2346898865321 1 23556677788988866543
No 376
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=73.94 E-value=41 Score=29.80 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh---------------------hHHHHHHHHHHhcCCCceeEEEE
Q 025059 31 PYVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT---------------------SGIGEARDTWENQRKNFIAEFFE 87 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~~~~~~~~~~~ 87 (258)
...+||=+|||. |. .+..++..+.++++.+|.+. .-.+.|++++.......+++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 357899999994 43 34555556888999999764 12344556666554444666676
Q ss_pred cCCCCCchhhhhhhcCCceeEEEecc
Q 025059 88 ADPCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
.++....+.+. -..+|+|+...
T Consensus 103 ~~~~~~~~~~~----~~~~DlVid~~ 124 (338)
T PRK12475 103 TDVTVEELEEL----VKEVDLIIDAT 124 (338)
T ss_pred ccCCHHHHHHH----hcCCCEEEEcC
Confidence 66643333222 24689997754
No 377
>PRK05854 short chain dehydrogenase; Provisional
Probab=73.89 E-value=32 Score=29.77 Aligned_cols=83 Identities=8% Similarity=-0.153 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch----hhhhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~ 102 (258)
.+.++|=.|++.| ....+ ++.+. +|+.++-+.+..+.+.+.+.....+.++.++.+|+.+..- ...+...
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 3567887777655 33333 33454 8999998887777666555433222367889999976331 1112223
Q ss_pred CCceeEEEecccc
Q 025059 103 ANQADLVCCFQHL 115 (258)
Q Consensus 103 ~~~fD~V~~~~~l 115 (258)
.+..|+++.+.+.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 4678998877654
No 378
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=73.85 E-value=32 Score=29.91 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=58.3
Q ss_pred cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
..++.+||=.|+ |-|..+..+++....++++++.+++..+.+++.+.. . .++..+ ....+...+.. ..+.
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa-----~-~vi~~~-~~~~~~~~i~~~~~~g 221 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF-----D-DAFNYK-EEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-----c-eeEEcC-CcccHHHHHHHhCCCC
Confidence 457899998886 345666666666444899999888877777653311 1 112111 01112211111 1256
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+-..+ ...+....++|+++|.++..
T Consensus 222 vd~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYFDNVG-----------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEEECCC-----------HHHHHHHHHHhccCcEEEEe
Confidence 898865331 13566788899999999865
No 379
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=73.83 E-value=34 Score=29.61 Aligned_cols=107 Identities=16% Similarity=0.013 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
|..|+=+|-- --.+.+++-. -+.++..+||++..+..-.+-.+..+.+ +++.+..|+.+. +-+. -.++||+.+
T Consensus 153 gK~I~vvGDD-DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~p-lpe~---~~~kFDvfi 226 (354)
T COG1568 153 GKEIFVVGDD-DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNP-LPED---LKRKFDVFI 226 (354)
T ss_pred CCeEEEEcCc-hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhccc-ChHH---HHhhCCeee
Confidence 4668888721 1112222222 3458999999999999887777665442 477888887653 3222 257899986
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCC---cEEEEEEcCc
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGITPDS 149 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg---G~~i~~~~~~ 149 (258)
.-- .++...++.++..=...|+.- |+|-++.-.+
T Consensus 227 TDP-----peTi~alk~FlgRGI~tLkg~~~aGyfgiT~res 263 (354)
T COG1568 227 TDP-----PETIKALKLFLGRGIATLKGEGCAGYFGITRRES 263 (354)
T ss_pred cCc-----hhhHHHHHHHHhccHHHhcCCCccceEeeeeccc
Confidence 532 245667788888877888876 8888886554
No 380
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.64 E-value=19 Score=32.65 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=46.9
Q ss_pred CEEEEEcCCC-CccH-HHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc-hhhhhhhcCCceeEE
Q 025059 33 VTVCDLYCGA-GVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQEKANQADLV 109 (258)
Q Consensus 33 ~~VLDlGcG~-G~~~-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~fD~V 109 (258)
.+||=||||. |.-+ ..+++.+..+|+..|-|.+..+.+...... +++..+.|+.+.+ +...+ ..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li----~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALI----KDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHH----hcCCEE
Confidence 4799999975 3222 333444556999999998887776555322 6788999987753 22222 344888
Q ss_pred Eecc
Q 025059 110 CCFQ 113 (258)
Q Consensus 110 ~~~~ 113 (258)
+...
T Consensus 73 In~~ 76 (389)
T COG1748 73 INAA 76 (389)
T ss_pred EEeC
Confidence 7654
No 381
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.28 E-value=46 Score=27.79 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=44.1
Q ss_pred CCEEEEEcCC-CCccH-HHHHHcCCCeEEEEecChh-------------------HHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 32 YVTVCDLYCG-AGVDV-DKWETALIANYIGIDVATS-------------------GIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 32 ~~~VLDlGcG-~G~~~-~~~~~~~~~~v~gvD~s~~-------------------~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
..+||=+||| .|..+ ..+++.+.++++-+|.+.- -.+.+++++.......++..+...+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i 90 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 4789999998 35443 4455558888988885431 2233455555444333455454444
Q ss_pred CCCchhhhhhhcCCceeEEEecc
Q 025059 91 CAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
........ -...||+|+...
T Consensus 91 ~~~~~~~l---~~~~~D~Vvdai 110 (231)
T cd00755 91 TPDNSEDL---LGGDPDFVVDAI 110 (231)
T ss_pred CHhHHHHH---hcCCCCEEEEcC
Confidence 32222221 134699997753
No 382
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=72.97 E-value=34 Score=29.84 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=53.5
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-hcCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~ 105 (258)
..++.+||=.|+|. |..+..+++. +...++++|.+++.++.+++. .. . .++..+ ......... .....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga-----~-~~i~~~--~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA-----M-QTFNSR--EMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC-----c-eEecCc--ccCHHHHHHHhcCCC
Confidence 34788999998764 3344445444 444588999988887766432 10 1 111111 111111110 02345
Q ss_pred ee-EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 AD-LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD-~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+| +|+-.-+ ....+....++|++||.+++.
T Consensus 229 ~d~~v~d~~G----------~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 229 FDQLILETAG----------VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCeEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 77 5543221 123567777899999998876
No 383
>PRK05867 short chain dehydrogenase; Provisional
Probab=72.93 E-value=44 Score=27.57 Aligned_cols=82 Identities=9% Similarity=-0.059 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-h---hhhhcC
Q 025059 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-T---QMQEKA 103 (258)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~ 103 (258)
.+.++|=.|++.|. .+..+++.+. +|+.++.+++.++...+.+...+ .++.++.+|+.+..-. . ......
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46789988876652 2233334455 89999999887777666554432 2677888998764311 1 111123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+++.+.+.
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 578998876554
No 384
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=72.81 E-value=9.9 Score=33.32 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|.=||-|. |..+.+++....+.|+-+|+|..-+.+...-+.. ++......... +.+ .-.+.|+|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~-----rv~~~~st~~~--iee----~v~~aDlv 235 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG-----RVHTLYSTPSN--IEE----AVKKADLV 235 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc-----eeEEEEcCHHH--HHH----HhhhccEE
Confidence 346788888885 6667777666566999999998777666554422 44554444322 222 23578998
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+..--+ .......-..+++.+.||||++++=...|.
T Consensus 236 IgaVLI----pgakaPkLvt~e~vk~MkpGsVivDVAiDq 271 (371)
T COG0686 236 IGAVLI----PGAKAPKLVTREMVKQMKPGSVIVDVAIDQ 271 (371)
T ss_pred EEEEEe----cCCCCceehhHHHHHhcCCCcEEEEEEEcC
Confidence 765422 234456667888899999999987665554
No 385
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.58 E-value=53 Score=29.94 Aligned_cols=72 Identities=11% Similarity=-0.032 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCCccHHHHHH---cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 31 PYVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
+..+|+=+|+|. ....+++ .....++.+|.+++.++.+++... .+.++.+|..+....... .-..+|
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~------~~~~i~gd~~~~~~L~~~--~~~~a~ 299 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELP------NTLVLHGDGTDQELLEEE--GIDEAD 299 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC------CCeEEECCCCCHHHHHhc--CCccCC
Confidence 457788888865 3333332 223389999999998887766532 456788998764332111 345788
Q ss_pred EEEec
Q 025059 108 LVCCF 112 (258)
Q Consensus 108 ~V~~~ 112 (258)
.|++.
T Consensus 300 ~vi~~ 304 (453)
T PRK09496 300 AFIAL 304 (453)
T ss_pred EEEEC
Confidence 88654
No 386
>PLN02827 Alcohol dehydrogenase-like
Probab=72.18 E-value=30 Score=30.92 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=54.2
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
.+++.+||=.|+|. |..+..+++. +...++++|.++...+.|++. +. . .++...-.+.+....+.. ..+.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga--~-~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GV--T-DFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC--c-EEEcccccchHHHHHHHHHhCCC
Confidence 45789999998764 3344444444 554689999988877766432 10 1 111111000112111111 1236
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~ 145 (258)
+|+|+-.-+ . ...+....+.+++| |.++..
T Consensus 264 ~d~vid~~G------~----~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSFECVG------D----TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEEECCC------C----hHHHHHHHHhhccCCCEEEEE
Confidence 898865432 1 12455666778998 998765
No 387
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=72.02 E-value=14 Score=32.06 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~ 105 (258)
+.++.+||-.|+|. |..+..+++....+++++..+++..+.+++.. . ..++. ..+..+...+.. +...
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~------~~v~~--~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-A------DDTIN--VGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-C------CEEec--CcccCHHHHHHHHhCCCC
Confidence 45788999998763 55566666664448888888888777664321 1 11111 111122222111 2346
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+.... . ...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~----~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------N----PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------C----HHHHHHHHHHHhcCCEEEEE
Confidence 899975431 1 23467778899999998865
No 388
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=72.02 E-value=23 Score=29.63 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=54.2
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+||=.|||. |..+..+++. +..++++++.+++..+.+++.-... . +.... .... ....+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~----~--~~~~~--~~~~------~~~~~ 160 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD----P--VAADT--ADEI------GGRGA 160 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc----c--ccccc--hhhh------cCCCC
Confidence 34788888888765 5555555554 4423999999888877665431000 0 11000 0000 23468
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+|+.... ....+....+.|+++|.++..
T Consensus 161 d~vl~~~~----------~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 161 DVVIEASG----------SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CEEEEccC----------ChHHHHHHHHHhcCCcEEEEE
Confidence 88865321 013566777889999999866
No 389
>PRK12939 short chain dehydrogenase; Provisional
Probab=71.96 E-value=53 Score=26.79 Aligned_cols=79 Identities=11% Similarity=-0.175 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCCccHHHHHH----cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh----hhcC
Q 025059 32 YVTVCDLYCGAGVDVDKWET----ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM----QEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~ 103 (258)
+.+||=.|+ +|+....++. .+. ++++++.+++.++...+.+.... .++.++++|+.+..-...+ ....
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567886665 4444444433 354 78999988877766655554332 2678899998764321111 1112
Q ss_pred CceeEEEeccc
Q 025059 104 NQADLVCCFQH 114 (258)
Q Consensus 104 ~~fD~V~~~~~ 114 (258)
+..|+|+...+
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 57898876654
No 390
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.95 E-value=45 Score=29.48 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=55.6
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
..++.+||=.|+|. |..+..+++. +...++++|.++...+.+++.- -..++.. ....+...+.. ....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g-------~~~~i~~--~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELG-------ATHVINP--KEEDLVAAIREITGGG 254 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcC-------CcEEecC--CCcCHHHHHHHHhCCC
Confidence 34678888888754 4444444444 5547999999988776664321 0112211 11122111110 1346
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+....- ...+..+.++|+++|.++..
T Consensus 255 ~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 255 VDYALDTTGV----------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CcEEEECCCC----------cHHHHHHHHHhccCCEEEEe
Confidence 8998753211 13466778889999998876
No 391
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=71.85 E-value=52 Score=29.18 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh---------------------hHHHHHHHHHHhcCCCceeEEEEc
Q 025059 32 YVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT---------------------SGIGEARDTWENQRKNFIAEFFEA 88 (258)
Q Consensus 32 ~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~~~~~~~~~~~~ 88 (258)
..+||=+|||. |. .+..++..+.++++.+|.+. .-.+.+++++........+.....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 57899999994 43 34555566888999999763 122344555554433335666666
Q ss_pred CCCCCchhhhhhhcCCceeEEEecc
Q 025059 89 DPCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 89 d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
++......+. -..+|+|+...
T Consensus 104 ~~~~~~~~~~----~~~~DlVid~~ 124 (339)
T PRK07688 104 DVTAEELEEL----VTGVDLIIDAT 124 (339)
T ss_pred cCCHHHHHHH----HcCCCEEEEcC
Confidence 6644333222 24689998753
No 392
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=71.42 E-value=48 Score=29.57 Aligned_cols=79 Identities=15% Similarity=-0.003 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh-------------------hHHHHHHHHHHhcCCCceeEEEEcC
Q 025059 31 PYVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEAD 89 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~~~~~~d 89 (258)
...+||=+|||. |. .+..++..+.++++.+|.+. .-.+.|++++.......+++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 358999999995 43 33455555888888888654 2345566666655444355555555
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 025059 90 PCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
+........ -..+|+|+...
T Consensus 107 i~~~~~~~~----~~~~DvVvd~~ 126 (355)
T PRK05597 107 LTWSNALDE----LRDADVILDGS 126 (355)
T ss_pred cCHHHHHHH----HhCCCEEEECC
Confidence 433222111 25699998754
No 393
>PRK07062 short chain dehydrogenase; Provisional
Probab=71.19 E-value=42 Score=27.88 Aligned_cols=83 Identities=7% Similarity=-0.173 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~ 102 (258)
.+.++|=.|++.| ....+ +..+. +|+.++.++..++.+.+.......+.++.++.+|+.+..-. ......
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3578888887665 23333 33355 89999999887776665554332222677888998764311 111122
Q ss_pred CCceeEEEecccc
Q 025059 103 ANQADLVCCFQHL 115 (258)
Q Consensus 103 ~~~fD~V~~~~~l 115 (258)
.+..|+++.+.+.
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 4678998776654
No 394
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=71.09 E-value=51 Score=26.20 Aligned_cols=95 Identities=20% Similarity=0.121 Sum_probs=56.1
Q ss_pred EEEEEcCCCC--ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-------C-CC--------ceeEEEEcCCCCCch
Q 025059 34 TVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------R-KN--------FIAEFFEADPCAENF 95 (258)
Q Consensus 34 ~VLDlGcG~G--~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~~~ 95 (258)
+|.=+|+|+= +.+..++..+. +|+.+|.+++.++.++++.... + .. .++. ...|+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl----- 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDL----- 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSG-----
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCH-----
Confidence 3556788762 23344444565 9999999999999988876541 0 00 0111 22222
Q ss_pred hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
. .-...|+|+=. ..+..+....+++++.+++.|+-+|.-.
T Consensus 74 ~-----~~~~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 74 E-----EAVDADLVIEA-----IPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp G-----GGCTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred H-----HHhhhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 1 11267777432 3577888999999999999999876443
No 395
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.97 E-value=60 Score=27.01 Aligned_cols=81 Identities=6% Similarity=-0.146 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCC-ccHH----HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch----hhhhhh
Q 025059 31 PYVTVCDLYCGAG-VDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQE 101 (258)
Q Consensus 31 ~~~~VLDlGcG~G-~~~~----~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~ 101 (258)
.+.++|=.|+++| +... .+++.+. +|+.+|.++...+.+.+...... ...++.+|+.+..- ......
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 4678898897752 3333 3344455 78888887654332322222211 34567889876431 111222
Q ss_pred cCCceeEEEecccc
Q 025059 102 KANQADLVCCFQHL 115 (258)
Q Consensus 102 ~~~~fD~V~~~~~l 115 (258)
..+..|+++.+.+.
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 34678998877654
No 396
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.74 E-value=32 Score=30.31 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=59.3
Q ss_pred CEEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCC-CCCchhhhhhhcCCceeE
Q 025059 33 VTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADP-CAENFETQMQEKANQADL 108 (258)
Q Consensus 33 ~~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~-~~~~~~~~~~~~~~~fD~ 108 (258)
.+|-=||+|+ .+.+..++..+. +|+..|++++.++.++.++...-... +........ ....+...+.+.-...|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 4688889985 334445555566 99999999998887766543210000 000000000 000000011111245688
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+-. +.+..+-...++.++.+.++|+. ++.+
T Consensus 87 ViEa-----vpE~l~vK~~lf~~l~~~~~~~a-IlaS 117 (321)
T PRK07066 87 IQES-----APEREALKLELHERISRAAKPDA-IIAS 117 (321)
T ss_pred EEEC-----CcCCHHHHHHHHHHHHHhCCCCe-EEEE
Confidence 7543 35667778889999999999987 4444
No 397
>PRK09072 short chain dehydrogenase; Provisional
Probab=70.49 E-value=61 Score=26.89 Aligned_cols=79 Identities=8% Similarity=-0.044 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 025059 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~ 104 (258)
+.+||=.|++.|. .+..++..+. +|++++.++..++........ ..++.++.+|+.+..-.. ... ..+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~-~~~ 79 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAR-EMG 79 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHH-hcC
Confidence 5678888866541 2233344455 899999998877766555421 226788899987643111 111 135
Q ss_pred ceeEEEecccc
Q 025059 105 QADLVCCFQHL 115 (258)
Q Consensus 105 ~fD~V~~~~~l 115 (258)
..|.|+...+.
T Consensus 80 ~id~lv~~ag~ 90 (263)
T PRK09072 80 GINVLINNAGV 90 (263)
T ss_pred CCCEEEECCCC
Confidence 68998876544
No 398
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=70.47 E-value=40 Score=29.15 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=51.3
Q ss_pred CEEEEEcCCC-C-ccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 33 VTVCDLYCGA-G-VDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 33 ~~VLDlGcG~-G-~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+|.=||+|. | ..+..+...+. .+++++|.+++.++.+++. +. ... ...+ ... .-...|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--~~~-~~~~-----~~~----~~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--GDR-VTTS-----AAE----AVKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--Cce-ecCC-----HHH----HhcCCCEE
Confidence 5688889987 2 23333444443 3799999998877665431 10 111 1111 111 12457998
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
+..- .......++..+...+++|..++.
T Consensus 71 iiav-------p~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 71 ILCV-------PVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred EECC-------CHHHHHHHHHHHHhhCCCCCEEEe
Confidence 7643 233456677788888999886543
No 399
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=70.47 E-value=11 Score=28.35 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCCccHH-HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 32 YVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~-~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
..+|+|+|-|.=.... .+...+. .++++|+.+. .| + . .+.++.-|+.+..+. . -...|+|.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a----~-~----g~~~v~DDif~P~l~-i----Y~~a~lIY 75 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KA----P-E----GVNFVVDDIFNPNLE-I----YEGADLIY 75 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----------------STTEE---SSS--HH-H----HTTEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---cc----c-c----CcceeeecccCCCHH-H----hcCCcEEE
Confidence 3599999999765444 4444465 9999999987 11 1 1 567899999876542 1 24678886
Q ss_pred eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+.- ...++...+-++++.+ |.-+++....+
T Consensus 76 SiR-------PP~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 76 SIR-------PPPELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp EES---------TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred EeC-------CChHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 543 3444555555555543 44566664444
No 400
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.39 E-value=8.5 Score=35.60 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCC-CccHHH-HHHcCCCeEEEEecChhHH-------------------HHHHHHHHhcCCCceeEEEEcC
Q 025059 31 PYVTVCDLYCGA-GVDVDK-WETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~-~~~~~~~~v~gvD~s~~~l-------------------~~a~~~~~~~~~~~~~~~~~~d 89 (258)
.+.+||=+|||. |.-+.+ ++..++.+++-+|.+.--+ ..|.+.........++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 478999999985 544433 3444787888776443221 1222333333333467889999
Q ss_pred CCCCchhhhhhhcCCceeEEEe
Q 025059 90 PCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
+.+..+.-.+ .++||+|..
T Consensus 91 I~e~~fnv~f---f~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEF---FRQFDIVLN 109 (603)
T ss_pred ccCcchHHHH---HHHHHHHHH
Confidence 8775442222 357898854
No 401
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.28 E-value=48 Score=28.96 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=55.8
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
.+++.+||=.|+|. |..+..+++. +...++++|.+++..+.+++. +. . .++. .....+...+.. ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~--~-~~v~--~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GA--T-DIVD--YKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC--c-eEec--CCCCCHHHHHHHHhCCC
Confidence 44788899888763 3444444444 554699999998777666531 10 1 1111 111122111111 234
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+|+|+.... . ...+..+.++|+++|.++..
T Consensus 235 ~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------G----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------C----HHHHHHHHHHhhcCCEEEEe
Confidence 6899875321 1 23567788889999998865
No 402
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.23 E-value=45 Score=28.47 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=50.4
Q ss_pred EEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059 34 TVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (258)
Q Consensus 34 ~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (258)
+|.=||+|. |.++..+...+. +|+++|.++..++.+.+.- .+.....+ .. .....|+|+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g-------~~~~~~~~-----~~-----~~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG-------LVDEASTD-----LS-----LLKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC-------CcccccCC-----Hh-----HhcCCCEEEE
Confidence 456678885 344455555555 8999999998877765431 11111111 10 1245788876
Q ss_pred ccccccccCCHHHHHHHHHHHHhcccCCcEE
Q 025059 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (258)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~ 142 (258)
.- +......+++++...++++.++
T Consensus 64 av-------p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 64 AL-------PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred cC-------CHHHHHHHHHHHHHhCCCCcEE
Confidence 43 3445667788888888877544
No 403
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=70.20 E-value=19 Score=30.99 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=57.9
Q ss_pred CEEEEEcCCC-C-ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC--------Cc-----------eeEEEEcCCC
Q 025059 33 VTVCDLYCGA-G-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--------NF-----------IAEFFEADPC 91 (258)
Q Consensus 33 ~~VLDlGcG~-G-~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~~-----------~~~~~~~d~~ 91 (258)
.+|.=||+|+ | ..+..++..+. +|+.+|.+++.++.++++...... +. ++.. ..|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~-- 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STS-- 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCC--
Confidence 3577889985 2 34444555565 899999999999887665432100 00 0000 011
Q ss_pred CCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 92 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
+. .-...|+|+..- .+..+....+++++.+.++|+.++ ++..++
T Consensus 80 ---~~-----~~~~aDlVieav-----~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg 123 (291)
T PRK06035 80 ---YE-----SLSDADFIVEAV-----PEKLDLKRKVFAELERNVSPETII-ASNTSG 123 (291)
T ss_pred ---HH-----HhCCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEE-EEcCCC
Confidence 10 123568886542 244455678889999998888755 444443
No 404
>PRK08324 short chain dehydrogenase; Validated
Probab=70.14 E-value=37 Score=33.09 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCCC--ccH-HHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh-hh---hhcC
Q 025059 31 PYVTVCDLYCGAG--VDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-QM---QEKA 103 (258)
Q Consensus 31 ~~~~VLDlGcG~G--~~~-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~---~~~~ 103 (258)
++.+||=.|++.| ..+ ..+...+. +|+.+|.++..++.+...+... .++.++.+|+.+..-.. .+ ....
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578888886443 222 22233355 8999999988777665554332 26788899987643111 11 1123
Q ss_pred CceeEEEecccccccc----CCHH-----------HHHHHHHHHHhcccC---CcEEEEE
Q 025059 104 NQADLVCCFQHLQMCF----ETEE-----------RARRLLQNVSSLLKP---GGYFLGI 145 (258)
Q Consensus 104 ~~fD~V~~~~~l~~~~----~~~~-----------~~~~~l~~i~~~Lkp---gG~~i~~ 145 (258)
+..|+|+...+....- .+.+ ....+++.+.+.+++ ||.+++.
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5789998776532100 0111 123455566666666 6777766
No 405
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=69.84 E-value=30 Score=30.61 Aligned_cols=94 Identities=18% Similarity=0.091 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~fD 107 (258)
.++.+||=.|+|. |..+..+++....++++++.++.....+.+.+ .+..+. +..+. .+.. ..+.+|
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~-------Ga~~vi-~~~~~~~~~~----~~~~~D 249 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL-------GADSFL-VSTDPEKMKA----AIGTMD 249 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC-------CCcEEE-cCCCHHHHHh----hcCCCC
Confidence 4788888898874 44445555553347888888765543332222 111111 11111 1111 123588
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+-..+ ....+.+..++|++||.++..
T Consensus 250 ~vid~~g----------~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 250 YIIDTVS----------AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEEECCC----------CHHHHHHHHHHhcCCcEEEEe
Confidence 8865332 112566677899999998866
No 406
>PRK10083 putative oxidoreductase; Provisional
Probab=69.72 E-value=47 Score=28.72 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=54.3
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHH-c-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (258)
..++.+||=.|+|. |..+..+++ . +...++++|.+++..+.+++.- ++.+ .|..+..+...+......
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G--------a~~~-i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG--------ADWV-INNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC--------CcEE-ecCccccHHHHHhcCCCC
Confidence 44788898898653 333344444 2 6556889999888777665421 1111 111112232222212223
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+.... ....+....+.|+++|.++..
T Consensus 229 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 229 PTLIIDAAC----------HPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 557654321 123567777899999999876
No 407
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=69.29 E-value=43 Score=29.06 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=54.8
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-CchhhhhhhcCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~ 105 (258)
..++.+||-.|+|. |..+..+++. +...+++++.++...+.+++. +. ..++..+-.. ..+.... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~---~~~~~~~~~~~~~~~~~~--~~~~ 227 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GA---DDTINPKEEDVEKVRELT--EGRG 227 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC---CEEecCccccHHHHHHHh--CCCC
Confidence 44788899998755 5555555555 443499998888776655321 10 1122111111 1111111 2345
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+|+.... ....+..+.++|+++|.++..
T Consensus 228 ~d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 228 ADLVIEAAG----------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 999975321 123566778889999998866
No 408
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=68.93 E-value=46 Score=30.00 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=57.4
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
..++.+||=.|+|. |..+..+++. +...++.+|.++.-++.|++. .+..+... ....+...+.. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~--------Ga~~v~~~-~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF--------GCETVDLS-KDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc--------CCeEEecC-CcccHHHHHHHHcCCC
Confidence 45778887788764 4444445544 554577778887777777542 12211111 11122221111 234
Q ss_pred ceeEEEecccccc---ccCC-HHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQM---CFET-EERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~---~~~~-~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+|+|+-.-+..- ..+. .......+.+..+++++||.+++.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 6899875433210 0000 011224677888899999999876
No 409
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.60 E-value=40 Score=27.56 Aligned_cols=79 Identities=11% Similarity=-0.080 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-hhh---hhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQM---QEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~---~~~~ 103 (258)
+.++|=.|++.| ....+ +..+. +++.+|.++..++.+.+..... +.++.+++.|+.+..-. ..+ ....
T Consensus 5 ~~~~lItG~~g~-iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 5 DKVIVITGGAQG-LGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 568888886443 23333 33354 8999999987776665555433 22677889998663211 111 1122
Q ss_pred CceeEEEeccc
Q 025059 104 NQADLVCCFQH 114 (258)
Q Consensus 104 ~~fD~V~~~~~ 114 (258)
+..|.|+...+
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 56899887654
No 410
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.55 E-value=56 Score=29.33 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecC-------------------hhHHHHHHHHHHhcCCCceeEEEEcC
Q 025059 31 PYVTVCDLYCGA-GV-DVDKWETALIANYIGIDVA-------------------TSGIGEARDTWENQRKNFIAEFFEAD 89 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s-------------------~~~l~~a~~~~~~~~~~~~~~~~~~d 89 (258)
...+||=+|||. |. .+..++..+.++++.+|.+ ..-.+.+.+++.......++......
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 457899999984 44 3445555688899999977 33345555666544332244444443
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 025059 90 PCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
+....+... -..+|+|+...
T Consensus 214 ~~~~~~~~~----~~~~D~Vv~~~ 233 (376)
T PRK08762 214 VTSDNVEAL----LQDVDVVVDGA 233 (376)
T ss_pred CChHHHHHH----HhCCCEEEECC
Confidence 332222111 24689997643
No 411
>PRK06128 oxidoreductase; Provisional
Probab=68.19 E-value=76 Score=27.11 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChh--HHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhh
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATS--GIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE 101 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~ 101 (258)
+.+||=.|++.| ....+ +..+. +|+.++.+.. ..+...+..... +.++.++.+|+.+..-.. ....
T Consensus 55 ~k~vlITGas~g-IG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSG-IGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCc-HHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 567888886544 33333 33354 6776665432 233333333322 226778899987643111 1111
Q ss_pred cCCceeEEEeccccccccC-----CHHH-----------HHHHHHHHHhcccCCcEEEEE
Q 025059 102 KANQADLVCCFQHLQMCFE-----TEER-----------ARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~-----~~~~-----------~~~~l~~i~~~LkpgG~~i~~ 145 (258)
..+..|+++.+.+...... +.++ .-.+++.+...|+++|.++.+
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 2357899987765421101 1222 224556667777888887765
No 412
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=67.80 E-value=23 Score=29.32 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=44.9
Q ss_pred EEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecChhHHHHHHH-HHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059 34 TVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARD-TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (258)
Q Consensus 34 ~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (258)
+++=+|||. |. .+..+...+. .++.+|.+++.+++... .. ....+++|..+....... .-..+|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~a--gi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEA--GIDDADAVV 71 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhc--CCCcCCEEE
Confidence 567788886 32 2333333344 89999999988776332 22 567889998775543322 346889987
Q ss_pred ecc
Q 025059 111 CFQ 113 (258)
Q Consensus 111 ~~~ 113 (258)
+.-
T Consensus 72 a~t 74 (225)
T COG0569 72 AAT 74 (225)
T ss_pred Eee
Confidence 643
No 413
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=67.72 E-value=97 Score=28.15 Aligned_cols=120 Identities=15% Similarity=0.048 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHh-------cCC-CceeEEEEc
Q 025059 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN-------QRK-NFIAEFFEA 88 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~-------~~~-~~~~~~~~~ 88 (258)
+.+.+..-+.-..++....|+|.|-|+.+...+.. +...-+|+++....-+.|...... .+. ...+..+++
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 55666665666778999999999999988877665 334677887766555444332221 111 225778888
Q ss_pred CCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..+......+ ....++|+++.+. |+ .+... =+.++..-+++|-.++-+
T Consensus 259 sf~~~~~v~eI---~~eatvi~vNN~~---Fd-p~L~l-r~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 259 SFLDPKRVTEI---QTEATVIFVNNVA---FD-PELKL-RSKEILQKCKDGTRIISS 307 (419)
T ss_pred ccCCHHHHHHH---hhcceEEEEeccc---CC-HHHHH-hhHHHHhhCCCcceEecc
Confidence 87654432222 3467888776632 33 33232 334888889999888766
No 414
>PRK09242 tropinone reductase; Provisional
Probab=67.63 E-value=59 Score=26.83 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA 103 (258)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~ 103 (258)
.+.++|=.|++.|. .+..+...+. +++.++.+++.++...+.+.....+.++.++.+|+.+..-. .......
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36788888876541 2223333355 89999988877776655554331123678889998764311 1111224
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+|+...+.
T Consensus 87 g~id~li~~ag~ 98 (257)
T PRK09242 87 DGLHILVNNAGG 98 (257)
T ss_pred CCCCEEEECCCC
Confidence 678998776643
No 415
>PRK06125 short chain dehydrogenase; Provisional
Probab=67.54 E-value=56 Score=27.07 Aligned_cols=81 Identities=7% Similarity=-0.039 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
+.++|=.|++.| .... ++..+. +|++++.++..++.+.+.+.... +.++.++.+|+.+..-...+....+..|
T Consensus 7 ~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 567888887554 3333 334455 89999998887776655554321 1257788899876432111111236789
Q ss_pred EEEecccc
Q 025059 108 LVCCFQHL 115 (258)
Q Consensus 108 ~V~~~~~l 115 (258)
+++...+.
T Consensus 84 ~lv~~ag~ 91 (259)
T PRK06125 84 ILVNNAGA 91 (259)
T ss_pred EEEECCCC
Confidence 88776543
No 416
>PRK06197 short chain dehydrogenase; Provisional
Probab=67.29 E-value=56 Score=27.97 Aligned_cols=83 Identities=6% Similarity=-0.214 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCCCccHHHHH----HcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (258)
.+.+||=.|+. |+....++ ..+. +++.++.++...+.+.+.+.....+.++.++.+|+.+..-.. .+...
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 45678877754 44444443 3354 888888887776665555443211226788999997643211 11122
Q ss_pred CCceeEEEecccc
Q 025059 103 ANQADLVCCFQHL 115 (258)
Q Consensus 103 ~~~fD~V~~~~~l 115 (258)
.+..|+|+.+.+.
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 3578999877654
No 417
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.08 E-value=47 Score=29.35 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=60.0
Q ss_pred HHHHhcCCCCEEEEEcCC-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhhhhh
Q 025059 24 LIKIYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQE 101 (258)
Q Consensus 24 li~~~~~~~~~VLDlGcG-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~ 101 (258)
|...-+.||.+|-=+|.| -|+++.++++.=..+|+++|-++..-+.|-+++-.. .|+.. ..+... ......
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd------~fv~~-~~d~d~~~~~~~~ 246 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD------VFVDS-TEDPDIMKAIMKT 246 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc------eeEEe-cCCHHHHHHHHHh
Confidence 333344578876666644 688888888873349999999987777776655321 22221 111111 111111
Q ss_pred cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
-++-.|.|++. ....+..+.++||++|.+++.
T Consensus 247 ~dg~~~~v~~~------------a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 247 TDGGIDTVSNL------------AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred hcCcceeeeec------------cccchHHHHHHhhcCCEEEEE
Confidence 24445555432 223466677899999999887
No 418
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=66.71 E-value=41 Score=25.54 Aligned_cols=80 Identities=13% Similarity=-0.005 Sum_probs=49.2
Q ss_pred EEEEEcCCCCccHHH----HHHcCCCeEEEEecC--hhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059 34 TVCDLYCGAGVDVDK----WETALIANYIGIDVA--TSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA 103 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~ 103 (258)
+||=.|+++| .... +++.+...++.+.-+ ...++.....++..+ .++.+.++|+.+..-. +.+....
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 4666776655 3333 344455588888888 566666655565433 3889999998764311 1122345
Q ss_pred CceeEEEeccccc
Q 025059 104 NQADLVCCFQHLQ 116 (258)
Q Consensus 104 ~~fD~V~~~~~l~ 116 (258)
+..|+++++.+..
T Consensus 79 ~~ld~li~~ag~~ 91 (167)
T PF00106_consen 79 GPLDILINNAGIF 91 (167)
T ss_dssp SSESEEEEECSCT
T ss_pred ccccccccccccc
Confidence 7899998776543
No 419
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=66.59 E-value=17 Score=31.94 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=59.3
Q ss_pred cCCCCEEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
++++.+||=.|... |..+.++++.....++++--+++..+.+++.-... -+.+...| +.+.... ...
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~----vi~y~~~~-----~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH----VINYREED-----FVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE----EEcCCccc-----HHHHHHHHcCCC
Confidence 45789999998554 46667776663327777777776666554443221 22222222 3222221 224
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
.+|+|+..-. ...+......|+++|.++....
T Consensus 211 gvDvv~D~vG-----------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 211 GVDVVLDTVG-----------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CceEEEECCC-----------HHHHHHHHHHhccCCEEEEEec
Confidence 6999976542 2345667788999999987633
No 420
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=66.08 E-value=13 Score=28.37 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=24.0
Q ss_pred EEcCCCC--ccHHHHH--Hc-CCCeEEEEecChhHHHHHHHH
Q 025059 37 DLYCGAG--VDVDKWE--TA-LIANYIGIDVATSGIGEARDT 73 (258)
Q Consensus 37 DlGcG~G--~~~~~~~--~~-~~~~v~gvD~s~~~l~~a~~~ 73 (258)
|+|+..| .....+. .. ...+++++|+++..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555543 22 345899999999999988888
No 421
>PRK05876 short chain dehydrogenase; Provisional
Probab=65.98 E-value=61 Score=27.39 Aligned_cols=80 Identities=13% Similarity=-0.063 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (258)
+.++|=.|++.| ....+ +..+. +++.+|.++..++.+.+.+... +.++.++.+|+.+..-.. ......
T Consensus 6 ~k~vlVTGas~g-IG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASG-IGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 567887776654 33333 33455 8999999887777665555433 226788899987643111 111123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+++.+.+.
T Consensus 82 g~id~li~nAg~ 93 (275)
T PRK05876 82 GHVDVVFSNAGI 93 (275)
T ss_pred CCCCEEEECCCc
Confidence 578998876654
No 422
>PRK08251 short chain dehydrogenase; Provisional
Probab=65.87 E-value=65 Score=26.33 Aligned_cols=81 Identities=6% Similarity=-0.109 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCccHHHHHH----cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhcCC
Q 025059 33 VTVCDLYCGAGVDVDKWET----ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKAN 104 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~~ 104 (258)
.++|=.|+ +|+....+++ .+ .+++.++.++..++.....+.....+.++.+..+|+.+..- .. ......+
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46777775 4444444433 35 48999999888777665555433223368889999977431 11 1112235
Q ss_pred ceeEEEecccc
Q 025059 105 QADLVCCFQHL 115 (258)
Q Consensus 105 ~fD~V~~~~~l 115 (258)
..|+|+...+.
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 68988776543
No 423
>PRK07904 short chain dehydrogenase; Provisional
Probab=65.73 E-value=54 Score=27.25 Aligned_cols=82 Identities=10% Similarity=-0.112 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCCccHHHHH----HcCCCeEEEEecChhH-HHHHHHHHHhcCCCceeEEEEcCCCCCch-h---hhhhh
Q 025059 31 PYVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENF-E---TQMQE 101 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~----~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~---~~~~~ 101 (258)
.+.+||=.|++.| ....++ ..+..+|+.++.++.. ++.+.+.+...+ ..++.++.+|+.+..- . +...
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~- 83 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF- 83 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH-
Confidence 3567888888655 343333 3343489999888764 665555454332 1267889999976431 1 1111
Q ss_pred cCCceeEEEecccc
Q 025059 102 KANQADLVCCFQHL 115 (258)
Q Consensus 102 ~~~~fD~V~~~~~l 115 (258)
..+..|++++..+.
T Consensus 84 ~~g~id~li~~ag~ 97 (253)
T PRK07904 84 AGGDVDVAIVAFGL 97 (253)
T ss_pred hcCCCCEEEEeeec
Confidence 12579988765544
No 424
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=65.55 E-value=46 Score=27.59 Aligned_cols=78 Identities=9% Similarity=-0.063 Sum_probs=47.6
Q ss_pred EEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhcCCce
Q 025059 34 TVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKANQA 106 (258)
Q Consensus 34 ~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~~~f 106 (258)
+||=.|++.|. .+..+++.+. +|+.++.++..++.+.+.+...+ ++.++.+|+.+..- .. ......+..
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 56777766541 2233344455 89999999888777766654432 57788999876431 11 111234678
Q ss_pred eEEEecccc
Q 025059 107 DLVCCFQHL 115 (258)
Q Consensus 107 D~V~~~~~l 115 (258)
|+++.+.+.
T Consensus 78 d~li~naG~ 86 (259)
T PRK08340 78 DALVWNAGN 86 (259)
T ss_pred CEEEECCCC
Confidence 998876553
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=65.28 E-value=56 Score=26.85 Aligned_cols=80 Identities=13% Similarity=-0.047 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-hh---hhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQ---MQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~~ 103 (258)
+.+||=.|++.| ....+ +..+. +|+++|.++..++.........+ .++.++.+|+.+..-. .. ....-
T Consensus 5 ~k~vlItGa~~~-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 5 GKVVVVSGVGPG-LGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 567887776544 44443 33455 89999998877766655554322 2578899998764321 11 11123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+|+...+.
T Consensus 81 g~~d~vi~~ag~ 92 (258)
T PRK07890 81 GRVDALVNNAFR 92 (258)
T ss_pred CCccEEEECCcc
Confidence 578998776643
No 426
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.04 E-value=25 Score=30.28 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=59.1
Q ss_pred CEEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC----CCcee----------EE-EEcCCCCCch
Q 025059 33 VTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIA----------EF-FEADPCAENF 95 (258)
Q Consensus 33 ~~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~----------~~-~~~d~~~~~~ 95 (258)
.+|-=||+|+ ++.+..++..+. +|+..|.+++.++.+.+++...- ..... .+ ...| +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~-----~ 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD-----L 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC-----H
Confidence 3677889985 344455555566 89999999999998877654310 00000 00 1111 1
Q ss_pred hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcc-cCCcEEEE
Q 025059 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLG 144 (258)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpgG~~i~ 144 (258)
. .-...|+|+-. +.++.+-...++..+.+++ +|+.++.-
T Consensus 80 ~-----~~~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 80 G-----DFADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred H-----HhCCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 0 12456777543 3567777888999999998 67765543
No 427
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=64.99 E-value=17 Score=31.61 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHH
Q 025059 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~ 75 (258)
++.+|.-+|+|.-..+.++ ...+.++.++|+++.-|+.-+-++.
T Consensus 63 ~ghrivtigSGGcn~L~yl-sr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYL-SRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCCcchHHHHh-hcCCceeEEEeCCHHHHHHHHHHHH
Confidence 5688999998865555555 4455599999999998876655554
No 428
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=64.97 E-value=68 Score=27.92 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (258)
++.+||-.|+|. |..+..+++. +...+++++.++...+.+.+ +. +..+ .+-.+..+...+.. ..+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g-------~~~~-~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AG-------ADVV-VNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hC-------CcEE-ecCCCccHHHHHHHHhCCCCc
Confidence 678888887653 4444444444 44478999988877776643 21 1111 11111122111111 123688
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+.... ....+..+.+.|+++|.++..
T Consensus 246 ~vid~~g----------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDFVN----------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEECCC----------CHHHHHHHHHHhhcCCeEEEE
Confidence 8875431 013467778889999999865
No 429
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=64.81 E-value=65 Score=27.75 Aligned_cols=104 Identities=20% Similarity=0.128 Sum_probs=61.5
Q ss_pred CEEEEEcCCC--CccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 33 VTVCDLYCGA--GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 33 ~~VLDlGcG~--G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+|+=+|.|. |.++..+...+. ..++|.|.+...++.+... .+.....+.. .. ......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l--------gv~d~~~~~~--~~-----~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL--------GVIDELTVAG--LA-----EAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc--------Ccccccccch--hh-----hhcccCCEE
Confidence 4677788774 444444444454 3578999888777766533 1111111100 00 024568999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~ 158 (258)
+..- +......+++++...|++|..+.=.+--...+...+.+
T Consensus 69 ivav-------Pi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~ 110 (279)
T COG0287 69 IVAV-------PIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEK 110 (279)
T ss_pred EEec-------cHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHH
Confidence 7643 46668899999999999998775443333455554443
No 430
>PRK06194 hypothetical protein; Provisional
Probab=64.65 E-value=62 Score=27.22 Aligned_cols=80 Identities=10% Similarity=-0.079 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~ 103 (258)
+.+||=.|.+ |+....+ ++.+. +|+.+|.+...++...+..... +.++.++.+|+.+..- .. ......
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678866654 3333333 33454 8999999887776665554432 2267889999876421 11 111123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+|+...+.
T Consensus 82 g~id~vi~~Ag~ 93 (287)
T PRK06194 82 GAVHLLFNNAGV 93 (287)
T ss_pred CCCCEEEECCCC
Confidence 568999887655
No 431
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=64.56 E-value=77 Score=26.58 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCC-Ccc-HHHHHHcCCCeEEEEecChh-------------------HHHHHHHHHHhcCCCceeEEEEcC
Q 025059 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVATS-------------------GIGEARDTWENQRKNFIAEFFEAD 89 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~-~~~~~~~~~~~v~gvD~s~~-------------------~l~~a~~~~~~~~~~~~~~~~~~d 89 (258)
...+||=+|||. |.. +..++..+.++++.+|.+.- -.+.+++++.......++..+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 358999999983 433 34444557788888874322 223344555444333344444444
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 025059 90 PCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
+....... .-..||+|+...
T Consensus 111 i~~~~~~~----~~~~~DiVi~~~ 130 (245)
T PRK05690 111 LDDDELAA----LIAGHDLVLDCT 130 (245)
T ss_pred CCHHHHHH----HHhcCCEEEecC
Confidence 43222211 124689887653
No 432
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=64.35 E-value=26 Score=27.09 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=53.3
Q ss_pred EEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCC------CceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 34 TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK------NFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
+|.=||+|.++.+....-. ...+|+-...+++.++.-++.-..... ..++. ...| +.+.+ ...
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~d-----l~~a~----~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTD-----LEEAL----EDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESS-----HHHHH----TT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccC-----HHHHh----Ccc
Confidence 3566888887665444322 334899999998877766554321110 00111 1222 22222 456
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+|+..-... ..+.+++++...++++-.+++.
T Consensus 71 d~IiiavPs~-------~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 71 DIIIIAVPSQ-------AHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp SEEEE-S-GG-------GHHHHHHHHTTTSHTT-EEEET
T ss_pred cEEEecccHH-------HHHHHHHHHhhccCCCCEEEEe
Confidence 8887654322 3678999999999777666654
No 433
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.28 E-value=66 Score=26.76 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhcC
Q 025059 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKA 103 (258)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~ 103 (258)
.+.++|=.|++.|. .+..++..+. +++.++.+++.++.+.+.+...+ .++.++.+|+.+..- .. ......
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 46788888877652 2233344455 78888988887777666655432 267889999876431 11 111123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+++...+.
T Consensus 86 ~~id~li~~ag~ 97 (265)
T PRK07097 86 GVIDILVNNAGI 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 578999877654
No 434
>PRK08223 hypothetical protein; Validated
Probab=64.11 E-value=46 Score=28.84 Aligned_cols=78 Identities=12% Similarity=-0.024 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecChh-------------------HHHHHHHHHHhcCCCceeEEEEcC
Q 025059 31 PYVTVCDLYCGA-GV-DVDKWETALIANYIGIDVATS-------------------GIGEARDTWENQRKNFIAEFFEAD 89 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~~-------------------~l~~a~~~~~~~~~~~~~~~~~~d 89 (258)
...+||=+|||. |. .+..++..+.++++.+|.+.- -.+.|++++.......+++.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 358999999994 43 456666668888888874422 234455555554443355555555
Q ss_pred CCCCchhhhhhhcCCceeEEEec
Q 025059 90 PCAENFETQMQEKANQADLVCCF 112 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~ 112 (258)
+......+. -..+|+|+..
T Consensus 106 l~~~n~~~l----l~~~DlVvD~ 124 (287)
T PRK08223 106 IGKENADAF----LDGVDVYVDG 124 (287)
T ss_pred cCccCHHHH----HhCCCEEEEC
Confidence 544333222 2468999753
No 435
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=64.06 E-value=31 Score=29.13 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=50.7
Q ss_pred HHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHH
Q 025059 47 DKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125 (258)
Q Consensus 47 ~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~ 125 (258)
..+...+ ..+++|.|.++..++.|.+.--. ... ..+ . + .-..+|+|+..- +....
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------~~~-~~~-----~-~----~~~~~Dlvvlav-------P~~~~ 58 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALELGII------DEA-STD-----I-E----AVEDADLVVLAV-------PVSAI 58 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------SEE-ESH-----H-H----HGGCCSEEEE-S--------HHHH
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------eec-cCC-----H-h----HhcCCCEEEEcC-------CHHHH
Confidence 4454555 35999999999998887543110 011 111 0 0 123569997543 56778
Q ss_pred HHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (258)
Q Consensus 126 ~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~ 158 (258)
..+++++...+++|+++.=+.--...+...+.+
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~ 91 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMER 91 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHH
T ss_pred HHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHH
Confidence 999999999999998775444444555555544
No 436
>PRK07576 short chain dehydrogenase; Provisional
Probab=64.05 E-value=85 Score=26.16 Aligned_cols=79 Identities=10% Similarity=-0.134 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc-hhhhh---hhc
Q 025059 31 PYVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQM---QEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~---~~~ 102 (258)
++.+||=.|.+ |+....+ +..+. .|+++|.+++.++...+...... .++.++..|+.+.. +...+ ...
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45678888754 3334333 33344 79999998877665544444322 15678889987643 11111 112
Q ss_pred CCceeEEEecc
Q 025059 103 ANQADLVCCFQ 113 (258)
Q Consensus 103 ~~~fD~V~~~~ 113 (258)
.+..|+++...
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 35689987654
No 437
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=64.03 E-value=69 Score=28.39 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=55.5
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
.+++.+||=.|||. |..+..+++. +..+++++|.+++.++.+++.-. ...+-..+ ...++...+.. ..+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga------~~~i~~~~-~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA------TDCVNPND-YDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------CeEEcccc-cchhHHHHHHHHhCCC
Confidence 45788999999864 4444555555 44479999999988887754211 11111111 01112111111 1236
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~ 145 (258)
+|+|+-.-. . ...+....+.+++| |.++..
T Consensus 256 ~d~vid~~G------~----~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 256 VDYSFECIG------N----VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCEEEECCC------C----HHHHHHHHHHhhcCCCeEEEE
Confidence 888865321 1 23456667788886 988765
No 438
>PRK07478 short chain dehydrogenase; Provisional
Probab=63.98 E-value=71 Score=26.28 Aligned_cols=81 Identities=7% Similarity=-0.062 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcCC
Q 025059 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~ 104 (258)
+.++|=.|++.|. .+..++..+. +++.++.++..++.+.+.+...+ .++.++.+|+.+..-. ..+....+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4678877766541 2233333455 89999998888777666655432 2577888998764311 11112235
Q ss_pred ceeEEEecccc
Q 025059 105 QADLVCCFQHL 115 (258)
Q Consensus 105 ~fD~V~~~~~l 115 (258)
..|+++.+.+.
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 78998877654
No 439
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=63.85 E-value=71 Score=26.30 Aligned_cols=81 Identities=10% Similarity=-0.086 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (258)
++.+||=.|++.| ....+ ++.+. +++.++.+++.++...+.++..+ .++.++.+|+.+..-.. .....
T Consensus 10 ~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 4678888886544 33333 33355 89999999877776655554432 25788999987643111 11112
Q ss_pred CCceeEEEecccc
Q 025059 103 ANQADLVCCFQHL 115 (258)
Q Consensus 103 ~~~fD~V~~~~~l 115 (258)
.++.|.|+...+.
T Consensus 86 ~~~id~vi~~ag~ 98 (256)
T PRK06124 86 HGRLDILVNNVGA 98 (256)
T ss_pred cCCCCEEEECCCC
Confidence 3578888776543
No 440
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.49 E-value=25 Score=30.09 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=54.7
Q ss_pred EEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-----CC-----------ceeEEEEcCCCCCch
Q 025059 34 TVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----KN-----------FIAEFFEADPCAENF 95 (258)
Q Consensus 34 ~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~-----------~~~~~~~~d~~~~~~ 95 (258)
+|.=||+|. +..+..++..+. +|+.+|.+++.++.+.++..... .+ .++. ...| +
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~-----~ 75 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLD-----L 75 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCc-----H
Confidence 577788885 233444445565 89999999999998776532210 00 0011 1111 1
Q ss_pred hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (258)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~ 144 (258)
.+ .-...|+|+..- .+.......++.++.+.++|+.++..
T Consensus 76 ~~----~~~~aD~Vi~av-----pe~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 76 KA----AVADADLVIEAV-----PEKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred HH----hhcCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11 124578886532 23444456778888899988876543
No 441
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=63.00 E-value=53 Score=23.47 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=50.5
Q ss_pred cccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecccCCC
Q 025059 115 LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEK 194 (258)
Q Consensus 115 l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~ 194 (258)
+|| ..++..+++.++....+ |.+++++.....+...++. +.. .|+.
T Consensus 6 IHY---p~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~-iG~-----------lFP~----------------- 51 (97)
T PF07109_consen 6 IHY---PAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHA-IGK-----------LFPR----------------- 51 (97)
T ss_pred ecc---CHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHH-Hhc-----------cCCC-----------------
Confidence 576 68889999999988754 6788886666555554442 111 1211
Q ss_pred CCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeC
Q 025059 195 FPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQ 238 (258)
Q Consensus 195 ~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~ 238 (258)
+.+...-|.+..+.+.+.++++|+++....
T Consensus 52 --------------~dRsp~i~~~~e~~l~~~l~~~g~~~~r~~ 81 (97)
T PF07109_consen 52 --------------PDRSPRIYPHREEDLRRALAAAGWRIGRTE 81 (97)
T ss_pred --------------CCCCCcEEEeCHHHHHHHHHhCCCeeeecc
Confidence 111222367889999999999999988654
No 442
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=62.93 E-value=81 Score=27.18 Aligned_cols=98 Identities=14% Similarity=0.191 Sum_probs=53.8
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+||=.|+|. |..+..+++. ...++++++-+++..+.+++ +.. . .++.... ...+...+....+.+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~-----~-~v~~~~~-~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGA-----D-LTINSKR-VEDVAKIIQEKTGGA 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCC-----c-EEecccc-cccHHHHHHHhcCCC
Confidence 45788898888643 4444555553 23489999999988887743 211 1 1111110 011111121112357
Q ss_pred eEE-EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLV-CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V-~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|.+ .+.. + ...+..+.+.|+++|.++..
T Consensus 232 d~vi~~~~-------~----~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 232 HAAVVTAV-------A----KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred cEEEEeCC-------C----HHHHHHHHHhccCCCEEEEE
Confidence 743 3321 1 23567778899999998865
No 443
>PRK06172 short chain dehydrogenase; Provisional
Probab=62.74 E-value=73 Score=26.15 Aligned_cols=80 Identities=13% Similarity=-0.070 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc-hhh---hhhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FET---QMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~---~~~~~~ 103 (258)
+.+||=.|++.| ....+ ++.+. +++.++-++..++.+.+.+...+ .++.++.+|+.+.. +.. ......
T Consensus 7 ~k~ilItGas~~-iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 7 GKVALVTGGAAG-IGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 568888887554 33333 33354 89999998877766655554332 26788899987642 111 111123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+|+...+.
T Consensus 83 g~id~li~~ag~ 94 (253)
T PRK06172 83 GRLDYAFNNAGI 94 (253)
T ss_pred CCCCEEEECCCC
Confidence 578999876643
No 444
>PRK07035 short chain dehydrogenase; Provisional
Probab=62.34 E-value=81 Score=25.84 Aligned_cols=80 Identities=10% Similarity=-0.055 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 025059 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~ 104 (258)
+.+||=.|++.|. .+..++..+. +|+.++.++..++...+.....+ .++.+++.|+.+..-.. .....-+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5678888877652 1222333355 89999998877776666554432 25678888987643111 1111235
Q ss_pred ceeEEEeccc
Q 025059 105 QADLVCCFQH 114 (258)
Q Consensus 105 ~fD~V~~~~~ 114 (258)
..|+++...+
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899886654
No 445
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=62.03 E-value=18 Score=31.66 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEEcCc--hHHHHHHH
Q 025059 123 ERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (258)
Q Consensus 123 ~~~~~~l~~i~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (258)
..+..+|..+..+|+|||.+++.+..+ +.+.+++.
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f 253 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFF 253 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHH
Confidence 578999999999999999998886665 55665533
No 446
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.67 E-value=79 Score=27.00 Aligned_cols=80 Identities=6% Similarity=-0.098 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~ 103 (258)
+.+||=.|++.| ....+ +..+. +|+.++.+.+.++...+.+...+ .++.++.+|+.+..-... +....
T Consensus 40 ~k~vlItGasgg-IG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 40 GKRILLTGASSG-IGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467888886554 33333 33354 89999999887776665554322 257788999876432111 11123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+|+.+.+.
T Consensus 116 g~id~li~~AG~ 127 (293)
T PRK05866 116 GGVDILINNAGR 127 (293)
T ss_pred CCCCEEEECCCC
Confidence 578998876543
No 447
>PRK07677 short chain dehydrogenase; Provisional
Probab=61.46 E-value=65 Score=26.52 Aligned_cols=78 Identities=13% Similarity=-0.056 Sum_probs=46.4
Q ss_pred CEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 025059 33 VTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~ 104 (258)
.++|=.|++.| .... +++.+. ++++++.++..++.+.+.+...+ .++.++.+|+.+..-... .....+
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 56787777654 2332 333355 89999988877766655554322 267889999876432111 111235
Q ss_pred ceeEEEeccc
Q 025059 105 QADLVCCFQH 114 (258)
Q Consensus 105 ~fD~V~~~~~ 114 (258)
..|+|+...+
T Consensus 78 ~id~lI~~ag 87 (252)
T PRK07677 78 RIDALINNAA 87 (252)
T ss_pred CccEEEECCC
Confidence 6899876553
No 448
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=61.04 E-value=89 Score=25.39 Aligned_cols=80 Identities=9% Similarity=-0.094 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhh---hhhcC
Q 025059 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQ---MQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~~~ 103 (258)
+.+||=.|++ |..... +++.+. +|++++-++..+..+.+.+.... .++.++.+|+.+..- ... .....
T Consensus 6 ~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 6 GRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4678877754 444333 344455 89999988776665555444332 257889999876431 111 11123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+.+|+|+...+.
T Consensus 82 ~~~d~vi~~ag~ 93 (251)
T PRK12826 82 GRLDILVANAGI 93 (251)
T ss_pred CCCCEEEECCCC
Confidence 468988776544
No 449
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.91 E-value=89 Score=27.58 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=55.0
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (258)
.+++.+||=+|+|. |..+..+++. +...++++|.+++.++.+++ +.. . .++...-.+..+...+.. ..+.
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa-----~-~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGA-----T-DCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC-----C-EEEcccccchHHHHHHHHHhCCC
Confidence 45788999998763 3344444444 44479999999988877753 211 1 112111000012111111 2236
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~ 145 (258)
+|+|+-.-+ . ...+....+.|+++ |.++..
T Consensus 257 ~d~vid~~g------~----~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 257 VDYTFECIG------N----VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CcEEEECCC------C----hHHHHHHHHhhccCCCeEEEE
Confidence 899865321 1 23556667788887 888765
No 450
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.88 E-value=90 Score=25.40 Aligned_cols=79 Identities=10% Similarity=-0.092 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 025059 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~ 103 (258)
+.+||=.|+..| .... ++..+. +|++++-++..++.....+.. +.++.++.+|+.+..-... .....
T Consensus 5 ~~~vlItGasg~-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTGASSG-IGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467787776443 3333 333455 799999998777665555433 1267889999876432111 11123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+.+|+|+...+.
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 578998876654
No 451
>PRK08339 short chain dehydrogenase; Provisional
Probab=60.82 E-value=77 Score=26.48 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-hhhh--hcCC
Q 025059 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQMQ--EKAN 104 (258)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~--~~~~ 104 (258)
.+.++|=.|++.|. .+..+++.+. +|+.+|.++..++.+.+.+.... +.++.++.+|+.+..-. ..+. ...+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 35678888876652 2233344455 89999999887777665554321 22678899999774311 1111 1235
Q ss_pred ceeEEEecccc
Q 025059 105 QADLVCCFQHL 115 (258)
Q Consensus 105 ~fD~V~~~~~l 115 (258)
..|+++.+.+.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 78988776543
No 452
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=60.79 E-value=35 Score=31.15 Aligned_cols=87 Identities=16% Similarity=0.051 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+|+=+|+|. |..+...++....+|+++|.++.....|.. . + +.. .++ .+.+ ...|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~--G--~~v--~~l-----eeal----~~aDV 253 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----D--G--FRV--MTM-----EEAA----KIGDI 253 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----c--C--CEe--CCH-----HHHH----hcCCE
Confidence 3689999999997 444444444433489999988865433321 1 1 111 121 1111 35699
Q ss_pred EEeccccccccCCHHHHHHHH-HHHHhcccCCcEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLL-QNVSSLLKPGGYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l-~~i~~~LkpgG~~i~~ 145 (258)
|++.-. ...++ ......+|+|++++..
T Consensus 254 VItaTG----------~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 254 FITATG----------NKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EEECCC----------CHHHHHHHHHhcCCCCcEEEEE
Confidence 866321 12233 3477899999999877
No 453
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=60.68 E-value=64 Score=27.21 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=46.5
Q ss_pred CeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccc---------cccCCHHH
Q 025059 55 ANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ---------MCFETEER 124 (258)
Q Consensus 55 ~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~---------~~~~~~~~ 124 (258)
.+++-+|++++.++.....+...... ....+...+- ..+ .-...|+|++..... .+..+.+-
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d----~~~----~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i 98 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDD----PYE----AFKDADVVIITAGVGRKPGMGRLDLLKRNVPI 98 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCc----hHH----HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence 48999999987766554443322100 0122222211 111 124578888744221 12233455
Q ss_pred HHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059 125 ARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (258)
Q Consensus 125 ~~~~l~~i~~~LkpgG~~i~~~~~~~~~ 152 (258)
...+.+.+.+.- |+|+++..+...+.+
T Consensus 99 ~~~i~~~i~~~~-p~a~~i~~tNP~d~~ 125 (263)
T cd00650 99 VKEIGDNIEKYS-PDAWIIVVSNPVDII 125 (263)
T ss_pred HHHHHHHHHHHC-CCeEEEEecCcHHHH
Confidence 667777777655 899887775443333
No 454
>PRK06940 short chain dehydrogenase; Provisional
Probab=60.20 E-value=67 Score=27.07 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=44.9
Q ss_pred EEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhhhh--hcCCceeE
Q 025059 34 TVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQ--EKANQADL 108 (258)
Q Consensus 34 ~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~--~~~~~fD~ 108 (258)
.+|=-|+ |+....+++. ...+|+.+|.++..++.+.+.+... +.++.++.+|+.+..- ...+. ...+..|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 3444454 3344443332 2248999999887776665555433 2267888999876431 11111 12357899
Q ss_pred EEeccccc
Q 025059 109 VCCFQHLQ 116 (258)
Q Consensus 109 V~~~~~l~ 116 (258)
++.+.+..
T Consensus 80 li~nAG~~ 87 (275)
T PRK06940 80 LVHTAGVS 87 (275)
T ss_pred EEECCCcC
Confidence 88776543
No 455
>PRK07024 short chain dehydrogenase; Provisional
Probab=59.91 E-value=66 Score=26.60 Aligned_cols=78 Identities=9% Similarity=-0.025 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-h---hhhhcCC
Q 025059 33 VTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-T---QMQEKAN 104 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~~ 104 (258)
.+||=.|+..| ....+ ++.+. +++.+|.+++.++...+.+... . ++.++.+|+.+..-. . ......+
T Consensus 3 ~~vlItGas~g-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGASSG-IGQALAREYARQGA-TLGLVARRTDALQAFAARLPKA--A-RVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 46777776443 33333 33355 8999999887776655444322 1 678899999764311 1 1112235
Q ss_pred ceeEEEecccc
Q 025059 105 QADLVCCFQHL 115 (258)
Q Consensus 105 ~fD~V~~~~~l 115 (258)
..|+++.+.+.
T Consensus 78 ~id~lv~~ag~ 88 (257)
T PRK07024 78 LPDVVIANAGI 88 (257)
T ss_pred CCCEEEECCCc
Confidence 68999887654
No 456
>PLN02780 ketoreductase/ oxidoreductase
Probab=59.61 E-value=61 Score=28.27 Aligned_cols=60 Identities=7% Similarity=-0.080 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (258)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (258)
+..+|=.|++.|. .+..+++.+. +++.++.+++.++...+.+.....+.++..+..|+.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 5788888876652 3344444465 8999999998888776666543212256777888763
No 457
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=59.45 E-value=96 Score=25.57 Aligned_cols=81 Identities=14% Similarity=-0.088 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCCccHHHHHH----cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDKWET----ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~ 102 (258)
++.++|=.|+ +|+....+++ .+. +++.++-+...++.........+ .++.++.+|+.+..-. ..+...
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888885 4444444433 355 89999998877776665554332 2677899999764321 111112
Q ss_pred CCceeEEEecccc
Q 025059 103 ANQADLVCCFQHL 115 (258)
Q Consensus 103 ~~~fD~V~~~~~l 115 (258)
.+..|.|+...+.
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 3578998776543
No 458
>PRK12829 short chain dehydrogenase; Provisional
Probab=59.45 E-value=63 Score=26.64 Aligned_cols=78 Identities=10% Similarity=-0.113 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCCccHHHHH----HcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (258)
++.++|=.|++. +....++ ..+. +|++++.++..++...+..... ++.++.+|+.+..-.. .....
T Consensus 10 ~~~~vlItGa~g-~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 10 DGLRVLVTGGAS-GIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCCEEEEeCCCC-cHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 568899888754 3444433 3355 7999999887766554443322 5678889987643111 11112
Q ss_pred CCceeEEEeccc
Q 025059 103 ANQADLVCCFQH 114 (258)
Q Consensus 103 ~~~fD~V~~~~~ 114 (258)
.+..|+|+...+
T Consensus 84 ~~~~d~vi~~ag 95 (264)
T PRK12829 84 FGGLDVLVNNAG 95 (264)
T ss_pred hCCCCEEEECCC
Confidence 357899877654
No 459
>PRK06484 short chain dehydrogenase; Validated
Probab=59.29 E-value=1.4e+02 Score=27.76 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhcCC
Q 025059 32 YVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~~ 104 (258)
+.++|=.|++.| ..+..+++.+. +|+.++.++..++...+... .++..+.+|+.+..- .. ......+
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456777776655 22233344455 89999998877776654432 145678899876431 11 1112346
Q ss_pred ceeEEEeccccccc---c--CCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMC---F--ETEERA-----------RRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~---~--~~~~~~-----------~~~l~~i~~~LkpgG~~i~~ 145 (258)
..|+++.+.+.... + .+.+.. -.+.+.+...++.+|.++..
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~i 399 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNL 399 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEE
Confidence 78999876543210 0 112222 22344555566777887765
No 460
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.24 E-value=1.1e+02 Score=25.90 Aligned_cols=96 Identities=18% Similarity=0.087 Sum_probs=55.8
Q ss_pred cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (258)
Q Consensus 29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (258)
..++.+||=.|+ +.|..+..+++....++++++.+++..+.+++ + .+..+..+ ...+...+......+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~-------g~~~~~~~--~~~~~~~i~~~~~~~ 209 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE-L-------GADEVVID--DGAIAEQLRAAPGGF 209 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c-------CCcEEEec--CccHHHHHHHhCCCc
Confidence 346788888886 34555555666544479999988877666632 1 11111111 112222221113568
Q ss_pred eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+|+.... ...+..+.+.|+++|.++..
T Consensus 210 d~vl~~~~-----------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 210 DKVLELVG-----------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred eEEEECCC-----------hHHHHHHHHHhccCCEEEEE
Confidence 98865331 13466778899999998765
No 461
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=59.11 E-value=34 Score=31.43 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
++.+|+=+|+|. |..+...++....+|+.+|+++.....+... .+.. .+ +.+. -..+|+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--------G~~v--~~-----l~ea----l~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--------GFRV--MT-----MEEA----AELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--------CCEe--cC-----HHHH----HhCCCEE
Confidence 689999999996 3333333333233899999988665443221 1111 12 2111 2368999
Q ss_pred EeccccccccCCHHHHHHHHH-HHHhcccCCcEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~-~i~~~LkpgG~~i~~ 145 (258)
+..-. + ..++. .....+|+|++++..
T Consensus 272 I~aTG------~----~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 272 VTATG------N----KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EECCC------C----HHHHHHHHHhcCCCCCEEEEc
Confidence 76431 1 22343 678889999998876
No 462
>PRK08589 short chain dehydrogenase; Validated
Probab=59.11 E-value=92 Score=26.09 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcCC
Q 025059 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~ 104 (258)
+.++|=.|++.|. .+..++..+. +++.++.+ ..++...+.+... +.++.++.+|+.+..-. .......+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5678878876652 2233334454 89999988 5555544444332 12678889998764311 11222346
Q ss_pred ceeEEEecccc
Q 025059 105 QADLVCCFQHL 115 (258)
Q Consensus 105 ~fD~V~~~~~l 115 (258)
..|+++.+.+.
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 78998877644
No 463
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=58.92 E-value=57 Score=30.89 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHH---------HHHhcccCCcEEEEEE-----cCchHHHHHHHHhHHh
Q 025059 119 FETEERARRLLQ---------NVSSLLKPGGYFLGIT-----PDSSTIWAKYQKNVEA 162 (258)
Q Consensus 119 ~~~~~~~~~~l~---------~i~~~LkpgG~~i~~~-----~~~~~~~~~~~~~~~~ 162 (258)
.++.+++..+|. -...++++||.|++-+ |=+--+...++...+.
T Consensus 364 VEGQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~ 421 (845)
T KOG3673|consen 364 VEGQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQS 421 (845)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHH
Confidence 455555554443 2456889999999873 3344455555554443
No 464
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=58.87 E-value=15 Score=30.78 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHH
Q 025059 15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75 (258)
Q Consensus 15 ~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~ 75 (258)
++..|+...+-.. +..+++|+=||+|..+..+.. ....++.-|+++..+...+..++
T Consensus 7 ~l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 7 KLAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 3455655433211 678999999999987766644 34489999999988877664443
No 465
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=58.84 E-value=91 Score=27.49 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=54.0
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-hcCCc
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ 105 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~ 105 (258)
..++.+||=+|+|. |..+..+++. +..+++++|.++..++.+++ +.. . .++...-....+...+. ...+.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~ga-----~-~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-FGA-----T-DFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC-----C-cEeccccccchHHHHHHHHhCCC
Confidence 45788999888753 3333444444 44479999999888777743 211 1 11111100011111111 01246
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~ 145 (258)
+|+|+-.-. . ...+....+.|+++ |.++..
T Consensus 255 ~d~vid~~g------~----~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 255 VDYSFECTG------N----ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCEEEECCC------C----hHHHHHHHHhcccCCCEEEEE
Confidence 898864321 1 13566677788885 888766
No 466
>PRK07814 short chain dehydrogenase; Provisional
Probab=58.81 E-value=79 Score=26.27 Aligned_cols=80 Identities=13% Similarity=-0.070 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh-hh---hhc
Q 025059 31 PYVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-QM---QEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~---~~~ 102 (258)
++.++|=.|.+. +....+ +..+. +|++++.+++.++...+.....+ .++.++.+|+.+..-.. .+ ...
T Consensus 9 ~~~~vlItGasg-gIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGR-GLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467888888544 344433 33455 89999999887776655554322 25788899987643211 11 112
Q ss_pred CCceeEEEeccc
Q 025059 103 ANQADLVCCFQH 114 (258)
Q Consensus 103 ~~~fD~V~~~~~ 114 (258)
-+..|+|+...+
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 357899877654
No 467
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=58.58 E-value=26 Score=24.81 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 68 GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..++..+.++. .+++...++.+.. .....+|+|++.-- ....+.++.+.+.+.+.-+..
T Consensus 17 ~ki~~~~~~~~~--~~~v~~~~~~~~~------~~~~~~Diil~~Pq----------v~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 17 KKMKKAAEKRGI--DAEIEAVPESELE------EYIDDADVVLLGPQ----------VRYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHHCCC--ceEEEEecHHHHH------HhcCCCCEEEEChh----------HHHHHHHHHHHhccCCCcEEE
Confidence 334444555533 5666666653321 13467899976432 334555566544444443333
No 468
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=58.54 E-value=62 Score=27.67 Aligned_cols=91 Identities=16% Similarity=0.057 Sum_probs=52.6
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
..++.+||=.|+|. |..+..+++....++++++.+++..+.+++ +.. ...+ +.... . ....+|
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~-----~~~~---~~~~~-~------~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV-----ETVL---PDEAE-S------EGGGFD 216 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC-----cEEe---Ccccc-c------cCCCCC
Confidence 34778888887642 333333344433369999999888887765 211 1111 11110 1 345689
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+...+ . ...+..+.++|+++|.++..
T Consensus 217 ~vid~~g------~----~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 217 VVVEATG------S----PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEEECCC------C----hHHHHHHHHHhhcCCEEEEE
Confidence 9876431 1 23456677789999999863
No 469
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=58.52 E-value=1.2e+02 Score=27.38 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCC-Ccc-HHHHHHcCCCeEEEEecCh-------------------hHHHHHHHHHHhcCCCceeEEEEcC
Q 025059 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEAD 89 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~-~~~~~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~~~~~~d 89 (258)
...+||=+|||. |.. +..++..+.++++.+|.+. .-.+.+++++.......++..+...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 457899999994 433 3444455888888888652 2234455555554333344455444
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 025059 90 PCAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
+........ -..+|+|+...
T Consensus 120 i~~~~~~~~----~~~~DlVid~~ 139 (370)
T PRK05600 120 LTAENAVEL----LNGVDLVLDGS 139 (370)
T ss_pred cCHHHHHHH----HhCCCEEEECC
Confidence 432222111 24689997643
No 470
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=58.12 E-value=1.1e+02 Score=25.57 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=22.2
Q ss_pred CCEEEEEcCCC-Ccc-HHHHHHcCCCeEEEEecC
Q 025059 32 YVTVCDLYCGA-GVD-VDKWETALIANYIGIDVA 63 (258)
Q Consensus 32 ~~~VLDlGcG~-G~~-~~~~~~~~~~~v~gvD~s 63 (258)
..+||=+|||. |.. +..++..+.++++.+|.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 47899999984 443 344455577788888754
No 471
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=58.09 E-value=38 Score=29.52 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=55.8
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch---hhhhhh--
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF---ETQMQE-- 101 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~-- 101 (258)
.+++.+||=.|+|. |..+..+++. +...++.++.+++..+.+++. .. . .++..+ +... ...+..
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~vi~~~--~~~~~~~~~~~~~~~ 230 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA-----T-HTVNVR--TEDTPESAEKIAELL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC-----c-EEeccc--cccchhHHHHHHHHh
Confidence 45788888887764 5555555555 443388898888777666442 11 1 121111 1111 111110
Q ss_pred cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (258)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~ 146 (258)
....+|+|+..... ...+..+.++|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA----------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 23559999754321 125677788999999988653
No 472
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=58.01 E-value=23 Score=30.82 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEEcCc--hHHHHHH
Q 025059 123 ERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKY 156 (258)
Q Consensus 123 ~~~~~~l~~i~~~LkpgG~~i~~~~~~--~~~~~~~ 156 (258)
..+..+|..+..+|+|||.+++.+..+ +.+.+.+
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~ 248 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLEDRIVKRF 248 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHH
Confidence 578999999999999999998886665 4555553
No 473
>PRK08862 short chain dehydrogenase; Provisional
Probab=57.87 E-value=79 Score=25.87 Aligned_cols=80 Identities=9% Similarity=-0.000 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-h---hhhhhcCC
Q 025059 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-E---TQMQEKAN 104 (258)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~---~~~~~~~~ 104 (258)
+.++|=.|++.|. .+..++..+. +++.++.++..++.+.+.....+ .++....+|+.+..- . ......-+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5688888888873 2334444455 89999999988877766654432 246677788765321 1 11111224
Q ss_pred -ceeEEEeccc
Q 025059 105 -QADLVCCFQH 114 (258)
Q Consensus 105 -~fD~V~~~~~ 114 (258)
..|+++.+.+
T Consensus 82 ~~iD~li~nag 92 (227)
T PRK08862 82 RAPDVLVNNWT 92 (227)
T ss_pred CCCCEEEECCc
Confidence 7899887763
No 474
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.52 E-value=1.2e+02 Score=26.29 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=55.0
Q ss_pred cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (258)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (258)
..++.+||=.|+|. |..+.++++. +...+++++.+++..+.+++ +. . . .++ |..+..+...+.. ..+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~g-a----~-~~i--~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-LG-A----T-IVL--DPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hC-C----C-EEE--CCCccCHHHHHHHHhCCC
Confidence 34778888887642 3333444444 44479999988888777643 21 1 1 111 1112222222211 234
Q ss_pred ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+|+|+-.... ...+..+.+.|+++|.++..
T Consensus 241 ~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 241 GVDVSFDCAGV----------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCEEEECCCC----------HHHHHHHHHhccCCCEEEEE
Confidence 58999754311 13566777889999998765
No 475
>PRK07791 short chain dehydrogenase; Provisional
Probab=57.52 E-value=92 Score=26.45 Aligned_cols=82 Identities=12% Similarity=-0.058 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecCh---------hHHHHHHHHHHhcCCCceeEEEEcCCCCCch---
Q 025059 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVAT---------SGIGEARDTWENQRKNFIAEFFEADPCAENF--- 95 (258)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~---------~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~--- 95 (258)
++.++|=.|++.|. .+..++..+. +++.+|.+. ..++.+.+.+... +.++.++.+|+.+..-
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhc--CCceEEEeCCCCCHHHHHH
Confidence 35788888877762 1223334455 788887664 4455444444332 2257788899876431
Q ss_pred -hhhhhhcCCceeEEEecccc
Q 025059 96 -ETQMQEKANQADLVCCFQHL 115 (258)
Q Consensus 96 -~~~~~~~~~~fD~V~~~~~l 115 (258)
........+..|+++.+.+.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 11112234678998877654
No 476
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=57.38 E-value=41 Score=30.19 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-CchhhhhhhcCCcee
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQAD 107 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~fD 107 (258)
++.+|+=+|+|. |..+...+.. +. +++.+|.+++.++.+...+.. .+. .+..+ ..+.+ .-..+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~-----~v~---~~~~~~~~l~~----~l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG-----RIH---TRYSNAYEIED----AVKRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc-----eeE---eccCCHHHHHH----HHccCC
Confidence 356799998884 4444444443 54 799999998776655443311 111 11111 11211 124689
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~ 148 (258)
+|+..-.... .....-+-+++.+.++||++++-...+
T Consensus 233 vVI~a~~~~g----~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 233 LLIGAVLIPG----AKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred EEEEccccCC----CCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 9987532111 000111234555668999888765433
No 477
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=57.37 E-value=83 Score=27.71 Aligned_cols=95 Identities=18% Similarity=0.069 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (258)
.++.+||=.|+|. |..+..+++....++++++.+++..+.+.+.+.. . ..+. +.....+.. ....+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga-----~-~~i~-~~~~~~~~~----~~~~~D~ 247 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA-----D-DYLV-SSDAAEMQE----AADSLDY 247 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC-----c-EEec-CCChHHHHH----hcCCCcE
Confidence 4678888887653 4444455555333788888877665555433211 1 1111 111111111 1235788
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+-.-. ....+..+.++|++||.++..
T Consensus 248 vid~~g----------~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 248 IIDTVP----------VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEECCC----------chHHHHHHHHHhccCCEEEEE
Confidence 864321 113556667889999998875
No 478
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=57.28 E-value=15 Score=32.09 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEEcCc--hHHHHHHH
Q 025059 123 ERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (258)
Q Consensus 123 ~~~~~~l~~i~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (258)
+.+..+|..+..+|+|||.+++.+..+ +.+.+++.
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f 254 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFF 254 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHH
Confidence 678999999999999999999887776 45555544
No 479
>PRK07326 short chain dehydrogenase; Provisional
Probab=57.26 E-value=1e+02 Score=24.88 Aligned_cols=78 Identities=9% Similarity=-0.210 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCCccHHHHHH----cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhhh---hhcC
Q 025059 32 YVTVCDLYCGAGVDVDKWET----ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQM---QEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~---~~~~ 103 (258)
+.+||=.|. +|.....+++ .+. +|++++.++.......+.+... .++.++.+|+.+..- ...+ ....
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467888884 5545444433 344 7999998887766555544332 267889999876431 1111 1122
Q ss_pred CceeEEEeccc
Q 025059 104 NQADLVCCFQH 114 (258)
Q Consensus 104 ~~fD~V~~~~~ 114 (258)
+..|+|+...+
T Consensus 81 ~~~d~vi~~ag 91 (237)
T PRK07326 81 GGLDVLIANAG 91 (237)
T ss_pred CCCCEEEECCC
Confidence 47888876543
No 480
>PRK07109 short chain dehydrogenase; Provisional
Probab=56.95 E-value=1.4e+02 Score=26.20 Aligned_cols=80 Identities=11% Similarity=-0.092 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~ 103 (258)
+.+||=.|++.| ....+ +..+. +++.++.++..++...+.+...+ .++.++.+|+.+..-... ....-
T Consensus 8 ~k~vlITGas~g-IG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 8 RQVVVITGASAG-VGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 467787776554 33333 33454 89999998888777666554432 267888999876432111 11123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+++.+.+.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 578998876543
No 481
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.93 E-value=23 Score=31.13 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCCCccHHHHH-H-cCCCeEEEEecChhHHHHHHHH
Q 025059 30 HPYVTVCDLYCGAGVDVDKWE-T-ALIANYIGIDVATSGIGEARDT 73 (258)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~~~-~-~~~~~v~gvD~s~~~l~~a~~~ 73 (258)
.||.+|.=.|+|.=+++...- + .+.++++|+|++++-.+.|++-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 367788888887644443321 2 2678999999999999988754
No 482
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=56.88 E-value=1.1e+02 Score=25.14 Aligned_cols=81 Identities=9% Similarity=-0.061 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCCccHHHHH----HcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~~~----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (258)
.+.+||=.|+ +|+....++ ..+. +|++++.++..++...+.++.. +.++.++.+|+.+..-.. .....
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 3578888885 444444443 3355 8999999988777666655543 226788899987643211 11122
Q ss_pred CCceeEEEecccc
Q 025059 103 ANQADLVCCFQHL 115 (258)
Q Consensus 103 ~~~fD~V~~~~~l 115 (258)
.+..|+|+...+.
T Consensus 85 ~~~~d~li~~ag~ 97 (255)
T PRK07523 85 IGPIDILVNNAGM 97 (255)
T ss_pred cCCCCEEEECCCC
Confidence 3568988877654
No 483
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=56.56 E-value=42 Score=29.11 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCC-ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~G-~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+.+|+=+|+|.- ..+...+.....+++.+|.++...+.++. . ...+...+ .+.+ .-..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~----G~~~~~~~----~l~~----~l~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----M----GLSPFHLS----ELAE----EVGKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----c----CCeeecHH----HHHH----HhCCCCEE
Confidence 5789999999863 32333333322499999999776555432 1 12222111 1111 12468999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+..-. . ..+-+.+.+.++||++++=.
T Consensus 215 I~t~p--~--------~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 215 FNTIP--A--------LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred EECCC--h--------hhhhHHHHHcCCCCcEEEEE
Confidence 77421 1 11234566778998877644
No 484
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=56.37 E-value=38 Score=29.92 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCCE--EEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059 18 EFAKTALIKIYSHPYVT--VCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (258)
Q Consensus 18 ~~~k~~li~~~~~~~~~--VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (258)
-|+...|-.....++.. =+|||.|.- ..+++.. .....+++|+....+..|++..+++++...+..++....+
T Consensus 87 hwI~DLLss~q~~k~~i~~GiDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~k 164 (419)
T KOG2912|consen 87 HWIEDLLSSQQSDKSTIRRGIDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQK 164 (419)
T ss_pred HHHHHHhhcccCCCcceeeeeeccCchh--hhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchh
Confidence 66666654443223333 268877664 4444332 2247899999999999999999887765566666554322
Q ss_pred Cchhhhhh-hcCCceeEEEeccc
Q 025059 93 ENFETQMQ-EKANQADLVCCFQH 114 (258)
Q Consensus 93 ~~~~~~~~-~~~~~fD~V~~~~~ 114 (258)
.-+-..+. .++..||.++|+-.
T Consensus 165 tll~d~~~~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 165 TLLMDALKEESEIIYDFCMCNPP 187 (419)
T ss_pred hcchhhhccCccceeeEEecCCc
Confidence 21111111 13456888888643
No 485
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.27 E-value=31 Score=29.38 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=57.5
Q ss_pred EEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-------C-CC--------ceeEEEEcCCCCCch
Q 025059 34 TVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------R-KN--------FIAEFFEADPCAENF 95 (258)
Q Consensus 34 ~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~~~ 95 (258)
+|-=||+|. +..+..++..+. +|+++|++++.++.++++.+.. + .. .++. ...| +
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~-----~ 77 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTD-----L 77 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCC-----H
Confidence 566788885 444555555565 8999999999998766543221 1 00 0111 1112 1
Q ss_pred hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (258)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~ 149 (258)
. .-...|+|+..- .+.......++.++.+.++|+.++ .+..++
T Consensus 78 ~-----~~~~aDlVi~av-----~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~ 120 (282)
T PRK05808 78 D-----DLKDADLVIEAA-----TENMDLKKKIFAQLDEIAKPEAIL-ATNTSS 120 (282)
T ss_pred H-----HhccCCeeeecc-----cccHHHHHHHHHHHHhhCCCCcEE-EECCCC
Confidence 1 124578885532 233455568999999999998766 443333
No 486
>PRK09186 flagellin modification protein A; Provisional
Probab=56.26 E-value=1e+02 Score=25.21 Aligned_cols=80 Identities=16% Similarity=-0.002 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~ 103 (258)
+.+||=.|++.| ....+ +..+. ++++++.+++.++.+.+.+........+.++.+|+.+..- .. .....-
T Consensus 4 ~k~vlItGas~g-iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 4 GKTILITGAGGL-IGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 567888886543 33333 33355 8999998888777665555322111145677899876431 11 111123
Q ss_pred CceeEEEecc
Q 025059 104 NQADLVCCFQ 113 (258)
Q Consensus 104 ~~fD~V~~~~ 113 (258)
+..|+|+.+.
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 5589987765
No 487
>PRK06153 hypothetical protein; Provisional
Probab=56.19 E-value=1.3e+02 Score=27.29 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=23.5
Q ss_pred CCEEEEEcCCC-CccH-HHHHHcCCCeEEEEecC
Q 025059 32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (258)
Q Consensus 32 ~~~VLDlGcG~-G~~~-~~~~~~~~~~v~gvD~s 63 (258)
+.+|+=+|||. |..+ ..+++.+.++++.+|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 57999999984 5544 45555688889888854
No 488
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=56.11 E-value=1.1e+02 Score=25.11 Aligned_cols=81 Identities=15% Similarity=-0.010 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhc
Q 025059 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEK 102 (258)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~ 102 (258)
.+.+||=.|++.| .... ++..+. +++.++.+...++.+....... +.++.++.+|+.+..- .. .....
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3678999997765 2332 333454 7888998887776655544332 2257788899876431 11 11122
Q ss_pred CCceeEEEecccc
Q 025059 103 ANQADLVCCFQHL 115 (258)
Q Consensus 103 ~~~fD~V~~~~~l 115 (258)
.+..|+|+...+.
T Consensus 86 ~~~~d~li~~ag~ 98 (255)
T PRK06113 86 LGKVDILVNNAGG 98 (255)
T ss_pred cCCCCEEEECCCC
Confidence 3578988776543
No 489
>PRK07411 hypothetical protein; Validated
Probab=55.36 E-value=1.3e+02 Score=27.11 Aligned_cols=78 Identities=17% Similarity=0.047 Sum_probs=45.6
Q ss_pred CCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecChh-------------------HHHHHHHHHHhcCCCceeEEEEcCC
Q 025059 32 YVTVCDLYCGA-GV-DVDKWETALIANYIGIDVATS-------------------GIGEARDTWENQRKNFIAEFFEADP 90 (258)
Q Consensus 32 ~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~~-------------------~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (258)
..+||=+|||. |. .+..++..+.++++-+|.+.- -.+.|++++.......++..+...+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~ 117 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRL 117 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEeccc
Confidence 57999999994 43 334455558888888874422 2344555665544444566666555
Q ss_pred CCCchhhhhhhcCCceeEEEecc
Q 025059 91 CAENFETQMQEKANQADLVCCFQ 113 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~ 113 (258)
........ -..+|+|+...
T Consensus 118 ~~~~~~~~----~~~~D~Vvd~~ 136 (390)
T PRK07411 118 SSENALDI----LAPYDVVVDGT 136 (390)
T ss_pred CHHhHHHH----HhCCCEEEECC
Confidence 43222111 25699997753
No 490
>PLN02494 adenosylhomocysteinase
Probab=55.32 E-value=36 Score=31.69 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (258)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (258)
.+.+|+=+|+|. |..+...++....+|+++|.++.....|... .... .+ +.+.+ ...|+|
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~--------G~~v--v~-----leEal----~~ADVV 313 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME--------GYQV--LT-----LEDVV----SEADIF 313 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc--------CCee--cc-----HHHHH----hhCCEE
Confidence 589999999996 4334444443223899999987654443221 1111 12 22222 357999
Q ss_pred EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
++.-.-. ..+.......||+||+++-...
T Consensus 314 I~tTGt~---------~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 314 VTTTGNK---------DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EECCCCc---------cchHHHHHhcCCCCCEEEEcCC
Confidence 8633221 1234667789999999988744
No 491
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.14 E-value=48 Score=28.36 Aligned_cols=94 Identities=13% Similarity=0.041 Sum_probs=54.7
Q ss_pred CEEEEEcCCCCc--cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc--------CCC---------ceeEEEEcCCCCC
Q 025059 33 VTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQ--------RKN---------FIAEFFEADPCAE 93 (258)
Q Consensus 33 ~~VLDlGcG~G~--~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~---------~~~~~~~~d~~~~ 93 (258)
.+|.=||+|.-+ .+..++..+. +|+.+|.+++.++.++++.... ... .++. ...|
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d---- 77 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTD---- 77 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCC----
Confidence 357778998533 3333344455 8999999999998887654211 000 0111 1111
Q ss_pred chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEE
Q 025059 94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (258)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~ 142 (258)
+.+ .-...|+|+..- .+..+....+++++...++++-++
T Consensus 78 -~~~----a~~~aDlVieav-----pe~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 78 -LAE----AVKDADLVIEAV-----PEDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred -HHH----HhcCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCCEE
Confidence 111 124568886643 234556778889999888877644
No 492
>PRK06139 short chain dehydrogenase; Provisional
Probab=54.79 E-value=99 Score=27.12 Aligned_cols=80 Identities=6% Similarity=-0.092 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (258)
+.+||=.|++.| .... ++..+. +|+.++.+++.++...+.+...+ .++.++.+|+.+..-.. ......
T Consensus 7 ~k~vlITGAs~G-IG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 7 GAVVVITGASSG-IGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCEEEEcCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 567887777554 3333 333455 89999999888877766655432 26777888987633111 111123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+++.+.+.
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 678999877643
No 493
>PRK07806 short chain dehydrogenase; Provisional
Probab=54.74 E-value=1.2e+02 Score=24.78 Aligned_cols=110 Identities=15% Similarity=-0.039 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCccHHHHH----HcCCCeEEEEecCh-hHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh-h---hhc
Q 025059 32 YVTVCDLYCGAGVDVDKWE----TALIANYIGIDVAT-SGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEK 102 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~----~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~---~~~ 102 (258)
+.++|=.|+..| ....+. ..+. +|++++.+. ...+.....+... +.++.++.+|+.+..-... + ...
T Consensus 6 ~k~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 567888886443 333333 3354 788887654 2333333333332 2257788999876432111 1 112
Q ss_pred CCceeEEEecccccccc---------CCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 103 ANQADLVCCFQHLQMCF---------ETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 103 ~~~fD~V~~~~~l~~~~---------~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
.+..|+|+...+..... .+......+++.+...++.+|.+++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 24688876554322100 11123445667777777666766654
No 494
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=54.65 E-value=1e+02 Score=27.53 Aligned_cols=94 Identities=18% Similarity=0.066 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhH-HHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (258)
.++.+||=.|+|. |..+..+++....+++++|.+++. .+.+++ . .++... +..+. ..+....+.+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----l----Ga~~~i-~~~~~---~~v~~~~~~~D 244 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----L----GADSFL-VTTDS---QKMKEAVGTMD 244 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----C----CCcEEE-cCcCH---HHHHHhhCCCc
Confidence 4688999888864 444455555533478999887654 333321 1 111111 11111 11111113588
Q ss_pred EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
+|+-.-+ ....+....+++++||.++..
T Consensus 245 ~vid~~G----------~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 245 FIIDTVS----------AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred EEEECCC----------cHHHHHHHHHhhcCCCEEEEE
Confidence 8865321 123566677889999999865
No 495
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.64 E-value=1.3e+02 Score=25.79 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=55.3
Q ss_pred CEEEEEcCCCCc--cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-------CCC---------ceeEEEEcCCCCCc
Q 025059 33 VTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAEN 94 (258)
Q Consensus 33 ~~VLDlGcG~G~--~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~---------~~~~~~~~d~~~~~ 94 (258)
.+|.=||+|.-+ .+..++..+. +|+.+|.+++.++.+.++.... +.- .++.+ ..|
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~----- 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATD----- 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCC-----
Confidence 467778988633 3344444455 8999999999988766543321 100 01111 111
Q ss_pred hhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (258)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i 143 (258)
+. .-...|+|+..- .+.......+++.+...++|+.+++
T Consensus 78 ~~-----~~~~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 78 LE-----DLADCDLVIEAA-----TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred HH-----HhcCCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11 123578886532 2344556788889999999988665
No 496
>PRK08643 acetoin reductase; Validated
Probab=54.52 E-value=1.2e+02 Score=24.88 Aligned_cols=78 Identities=13% Similarity=-0.057 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hh---hhhhcCC
Q 025059 33 VTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKAN 104 (258)
Q Consensus 33 ~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~~ 104 (258)
.++|=.|+..| .... ++..+. +++.+|.++..++.....+.... .++.++.+|+.+..- .. ......+
T Consensus 3 k~~lItGas~g-iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46676665543 3333 333454 89999988877766655554332 267788999876431 11 1111235
Q ss_pred ceeEEEeccc
Q 025059 105 QADLVCCFQH 114 (258)
Q Consensus 105 ~fD~V~~~~~ 114 (258)
..|+|+...+
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 7899877654
No 497
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=54.16 E-value=1.2e+02 Score=26.48 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=52.0
Q ss_pred CEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC--CCCchhhhhhhcCCceeE
Q 025059 33 VTVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP--CAENFETQMQEKANQADL 108 (258)
Q Consensus 33 ~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~fD~ 108 (258)
.+|+=+|+|. |. ++..+++.+ ..|+.+--++. ++..++. + ..+...+- .........+.....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----G----L~i~~~~~~~~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----G----LRIEDEGGNFTTPVVAATDAEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----C----eEEecCCCccccccccccChhhcCCCCE
Confidence 3678889985 33 334444445 46666665554 4444332 1 11111111 001111111113468999
Q ss_pred EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (258)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~ 145 (258)
|+..- ..-+...+++.+...+++...+++.
T Consensus 71 viv~v-------Ka~q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 71 VIVTV-------KAYQLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred EEEEe-------ccccHHHHHHHhhhcCCCCcEEEEE
Confidence 97643 1224788999999999999887665
No 498
>PRK06500 short chain dehydrogenase; Provisional
Probab=54.07 E-value=1.2e+02 Score=24.67 Aligned_cols=77 Identities=13% Similarity=-0.110 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA 103 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~ 103 (258)
+.+||=.|++.| ....+ +..+. ++++++.++..++...+... .++.++++|+.+..-. ..+....
T Consensus 6 ~k~vlItGasg~-iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSG-IGLETARQFLAEGA-RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 457777776543 33333 33354 89999988766655444331 1567788888663311 1111123
Q ss_pred CceeEEEecccc
Q 025059 104 NQADLVCCFQHL 115 (258)
Q Consensus 104 ~~fD~V~~~~~l 115 (258)
+..|+|+...+.
T Consensus 79 ~~id~vi~~ag~ 90 (249)
T PRK06500 79 GRLDAVFINAGV 90 (249)
T ss_pred CCCCEEEECCCC
Confidence 578988765543
No 499
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=53.17 E-value=1.1e+02 Score=26.44 Aligned_cols=99 Identities=14% Similarity=0.042 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 025059 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (258)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~ 105 (258)
.++.+||=.|+|. |..+..+++. +...+++++.+++..+.+++.-. . .++ +..+..+...+.. ....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~------~-~~~--~~~~~~~~~~~~~~~~~~~ 232 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA------T-RAV--NVAKEDLRDVMAELGMTEG 232 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC------c-EEe--cCccccHHHHHHHhcCCCC
Confidence 4677888777654 4444555554 44468888878777665543210 1 111 1111222221111 2356
Q ss_pred eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (258)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~ 147 (258)
+|+|+.... ....+..+.++|+++|.++....
T Consensus 233 ~d~v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 233 FDVGLEMSG----------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCEEEECCC----------CHHHHHHHHHHHhcCCEEEEEec
Confidence 899875321 12356667889999999988743
No 500
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=53.16 E-value=1.8e+02 Score=27.82 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhhhhhcCCce
Q 025059 32 YVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQEKANQA 106 (258)
Q Consensus 32 ~~~VLDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~f 106 (258)
+.+||==| |+|.....+.++ ++.+++-+|.++..+-.-...+...-...++.++-+|+.+..- ...+ ...+.
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~--~~~kv 326 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAM--EGHKV 326 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHH--hcCCC
Confidence 57777665 666666666554 7789999999999988877776653223378899999987432 2222 35678
Q ss_pred eEEEeccccccc
Q 025059 107 DLVCCFQHLQMC 118 (258)
Q Consensus 107 D~V~~~~~l~~~ 118 (258)
|+|.-..++-++
T Consensus 327 d~VfHAAA~KHV 338 (588)
T COG1086 327 DIVFHAAALKHV 338 (588)
T ss_pred ceEEEhhhhccC
Confidence 999777666543
Done!