BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025061
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
thaliana GN=PPD3 PE=1 SV=2
Length = 247
Score = 283 bits (724), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 153/259 (59%), Positives = 179/259 (69%), Gaps = 23/259 (8%)
Query: 11 MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
MA+ISP W P +FSN + T ++ C D+ + RI
Sbjct: 1 MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49
Query: 69 QDDDSRTKRREVMFQLAFTACSFPAIVSYALAAND----LRVYTDELNKFEISIPQDWQL 124
+D KRR+VM Q+A + P +S A A + RVYTDE NKFEISIPQDWQ+
Sbjct: 50 RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108
Query: 125 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 184
G EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168
Query: 185 RPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 239
+P GV AKLID FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228
Query: 240 ESEKYGSNIEKAVASFRFI 258
ES + S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247
>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=dbp3 PE=3 SV=1
Length = 493
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 36/212 (16%)
Query: 75 TKRREVMF---------QLAFTACSFPAIVSYAL-AANDLRVYTDELNKFEISIPQD--- 121
+KR+ VMF +LA T S P V+ + D R T E+ P +
Sbjct: 256 SKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEG 315
Query: 122 --WQLGAGEPNGFKSITAF--YPQEASS-----SSVSVVITGLGPDFTRMESFGKVEAF- 171
QL G + + AF Y +EA+ S + G+ D ++ E F ++AF
Sbjct: 316 RLVQLLKQHQRGAEKVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFK 375
Query: 172 --ADTLVSGLDRSWRRPPGVAAKLI----------DWFYYIEYTLQNPGESRK-HLFSAI 218
A T++ D + R A KL+ D+ + I T + E LF+
Sbjct: 376 TGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTET 435
Query: 219 GMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 250
A +G + GQ V EE K+G ++K
Sbjct: 436 DKAQSGALINVLKAAGQEVPEELLKFGGTVKK 467
>sp|Q5VW36|FOCAD_HUMAN Focadhesin OS=Homo sapiens GN=FOCAD PE=1 SV=1
Length = 1801
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 141 QEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYI 200
EAS SS S + + P+F M+ + V DTL+ +D ++ P G +L+ WFYY
Sbjct: 974 HEASLSSDSDGLLEVQPNFLSMKEW--VSMVLDTLLVIVDSHYQ-PRG---QLLSWFYYK 1027
Query: 201 EYTLQN 206
Y+ +N
Sbjct: 1028 SYSGEN 1033
>sp|P82681|TL13_SPIOL Thylakoid lumenal 13.8 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 21
Score = 32.0 bits (71), Expect = 4.6, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 102 NDLRVYTDELNKFEISIPQD 121
++ RVY+D+ NK++ISIPQD
Sbjct: 2 DEFRVYSDDANKYKISIPQD 21
>sp|A1AV71|DXR_RUTMC 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ruthia magnifica
subsp. Calyptogena magnifica GN=dxr PE=3 SV=1
Length = 383
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 106 VYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESF 165
+++D+ N F +S +WQL N ++ A E+S+ +S +IT + ++
Sbjct: 23 LHSDKFNIFTLSANTNWQLMLELCNKYQPNYAIMVDESSAEKLSTIITTDTQILSGTQAL 82
Query: 166 GKVEAFADT 174
KV A DT
Sbjct: 83 DKVVAHQDT 91
>sp|B3QY38|NUON2_CHLT3 NADH-quinone oxidoreductase subunit N 2 OS=Chloroherpeton
thalassium (strain ATCC 35110 / GB-78) GN=nuoN2 PE=3
SV=1
Length = 512
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 111 LNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVV-ITGLGPDFTRMESFGKVE 169
+ F + I ++G+ + N +K + P A+S ++ +V +TGL P + GK+
Sbjct: 362 IGAFFVIILISNEIGSDDVNDYKGLGKKMPLAAASLTIFLVSLTGLPP---TVGFIGKLM 418
Query: 170 AFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTL-------QNPGESRKHLFSAIGMAS 222
F+ L G W GV ++ ++Y + L ++ E+ + +GM S
Sbjct: 419 IFSALLAKGPVFVWLAVIGVLTSVVSLYFYFKIPLNMYLRESEDGSETEFN----VGMLS 474
Query: 223 NGWYNRLYTVTGQF 236
N L +T F
Sbjct: 475 NALVAFLMILTVVF 488
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,285,325
Number of Sequences: 539616
Number of extensions: 3846770
Number of successful extensions: 8617
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8611
Number of HSP's gapped (non-prelim): 8
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)