Query 025061
Match_columns 258
No_of_seqs 129 out of 163
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 4.7E-48 1E-52 351.7 19.9 179 72-258 74-285 (286)
2 PLN00042 photosystem II oxygen 100.0 1.3E-43 2.8E-48 322.0 20.6 174 73-257 48-259 (260)
3 PF01789 PsbP: PsbP; InterPro 100.0 2.9E-40 6.3E-45 281.9 13.4 148 99-257 18-174 (175)
4 PLN00067 PsbP domain-containin 100.0 7.6E-35 1.7E-39 264.6 19.0 173 74-257 42-263 (263)
5 PLN00066 PsbP domain-containin 100.0 2.5E-33 5.4E-38 255.7 18.1 167 74-258 44-259 (262)
6 PLN03152 hypothetical protein; 100.0 8.5E-28 1.8E-32 214.7 13.4 135 104-258 78-241 (241)
7 PF08786 DUF1795: Domain of un 97.7 0.0011 2.5E-08 53.6 12.2 124 115-255 3-130 (130)
8 PF10738 Lpp-LpqN: Probable li 93.8 2.5 5.3E-05 37.2 13.4 134 114-257 33-173 (175)
9 COG5435 Uncharacterized conser 92.9 1.4 3E-05 38.2 10.1 125 115-257 10-141 (147)
10 PRK11615 hypothetical protein; 79.7 46 0.001 29.9 14.4 135 105-257 41-184 (185)
11 PF12712 DUF3805: Domain of un 77.9 46 0.001 29.0 12.1 123 105-257 2-130 (153)
12 PF07174 FAP: Fibronectin-atta 60.5 1.4E+02 0.003 28.8 11.0 131 105-243 110-272 (297)
13 COG4784 Putative Zn-dependent 57.5 34 0.00073 34.1 6.7 22 105-126 288-309 (479)
14 COG3540 PhoD Phosphodiesterase 38.8 50 0.0011 34.0 4.8 44 125-169 43-92 (522)
15 PF08006 DUF1700: Protein of u 37.0 19 0.00041 30.9 1.3 20 160-179 45-64 (181)
16 PF07526 POX: Associated with 27.1 32 0.0007 29.2 1.1 29 228-257 81-109 (140)
17 TIGR02811 formate_TAT formate 26.9 40 0.00087 25.2 1.5 15 73-87 7-21 (66)
18 smart00564 PQQ beta-propeller 22.2 97 0.0021 18.5 2.4 16 227-242 16-31 (33)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=4.7e-48 Score=351.67 Aligned_cols=179 Identities=20% Similarity=0.301 Sum_probs=151.8
Q ss_pred CcchhhHHHHHHHH--HHHhcccccchhhhhc-cCceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCCCCCceE
Q 025061 72 DSRTKRREVMFQLA--FTACSFPAIVSYALAA-NDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSV 148 (258)
Q Consensus 72 ~~~~~RR~~Ll~i~--~s~~sl~~~~s~A~A~-~gf~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNV 148 (258)
..++.||.+++..+ +.++...+..++|+|+ .||++|+|+.|||+|+||.||+++++ +|+++ +|+|.++.+|||
T Consensus 74 ~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~--~G~DV--vFrD~Ie~~ENV 149 (286)
T PLN00059 74 VCAVGRRKSMMMGLLMSGLIVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRG--AGADI--FFRDPVVLDENL 149 (286)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhcCchhhcCCcccceeEcCCCCeEEeCCCCCeEecc--CCCce--EEeccCccccce
Confidence 46789999965322 3332223234466766 79999999999999999999999996 48886 899999999999
Q ss_pred EEEEEcCCC-CccccccCCCHHHHHHHHHhccccCC---CCCCCccceeeee----------EEEEEEEEeCCC------
Q 025061 149 SVVITGLGP-DFTRMESFGKVEAFADTLVSGLDRSW---RRPPGVAAKLIDW----------FYYIEYTLQNPG------ 208 (258)
Q Consensus 149 SVvItpv~~-d~~sL~dfGsp~evae~Lv~~~~~s~---~~~~g~~AkLida----------YY~lEY~v~~p~------ 208 (258)
||+|+|+++ ++++|+|||+|+|||++|++++++++ +...++.++|++| ||+|||.+++++
T Consensus 150 SV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~ 229 (286)
T PLN00059 150 SVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELA 229 (286)
T ss_pred EEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCccccccc
Confidence 999998864 57899999999999999999987643 2234799999999 999999999972
Q ss_pred ----------CCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceeeC
Q 025061 209 ----------ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 258 (258)
Q Consensus 209 ----------e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v~ 258 (258)
+|.||+|++|+|.+ ||||||++|+||+||+|++++|++||+||+|+
T Consensus 230 ~~~qdr~~~~~w~RH~LA~v~V~n----GkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~ 285 (286)
T PLN00059 230 VMPQDRVARLEWNRRYLAVLGVEN----DRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE 285 (286)
T ss_pred ccccccccccccceeeEEEEEEeC----CEEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence 46899999999986 49999999999999999999999999999985
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=1.3e-43 Score=321.97 Aligned_cols=174 Identities=22% Similarity=0.247 Sum_probs=138.3
Q ss_pred cchhhHHHHHHHHHHHhcccccchhhhh---c-----------cCceeeeeCCCceEEEccCCCcccccC-CCCcceEEE
Q 025061 73 SRTKRREVMFQLAFTACSFPAIVSYALA---A-----------NDLRVYTDELNKFEISIPQDWQLGAGE-PNGFKSITA 137 (258)
Q Consensus 73 ~~~~RR~~Ll~i~~s~~sl~~~~s~A~A---~-----------~gf~~y~D~~dGYsFlyPsgW~~v~g~-~~G~k~V~~ 137 (258)
..+.||.+|++++.+++ +.+.+++|.| + +||.+|. +|||+|+||++|+++++. .+|.+ ++
T Consensus 48 ~~~srr~~l~~~~ga~a-~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~d--v~ 122 (260)
T PLN00042 48 SAVSRRAALALLAGAAA-AGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQV--LR 122 (260)
T ss_pred ccccHHHHHHHHHHHHH-hhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCce--EE
Confidence 55889988887776642 2232333322 1 8999998 599999999999988753 46774 49
Q ss_pred ecCCCCCCceEEEEEEcCCCCccccccCCCHHH----HHHHHHhccccCC-----CCCC--Cccceeeee---------E
Q 025061 138 FYPQEASSSSVSVVITGLGPDFTRMESFGKVEA----FADTLVSGLDRSW-----RRPP--GVAAKLIDW---------F 197 (258)
Q Consensus 138 F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~e----vae~Lv~~~~~s~-----~~~~--g~~AkLida---------Y 197 (258)
|+|++++++||||+|+|+ ++++|+|||+|+| |++.|.++..... -..| ..+|+|+++ |
T Consensus 123 f~D~~~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~Y 200 (260)
T PLN00042 123 FEDNFDATSNLSVMVTPT--DKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPY 200 (260)
T ss_pred eeccccccccEEEEEecC--CcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEE
Confidence 999999999999999998 5689999999999 5555555543211 0112 347899999 9
Q ss_pred EEEEEEEeCCC--CCceeEEEEEEEecCCccceEEEEEcccCchhhHHh-hHHHHHHhcceee
Q 025061 198 YYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVASFRF 257 (258)
Q Consensus 198 Y~lEY~v~~p~--e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~-k~~l~~Vv~SF~v 257 (258)
|+|||.++.|+ ++.||+|++++|.+ ||||||++|+||+||.|+ ++.|++|++||+|
T Consensus 201 Y~lE~~~~~ad~d~~~RH~LatatV~~----GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV 259 (260)
T PLN00042 201 YYLSVLTRTADGDEGGKHQLITATVSD----GKLYICKAQAGDKRWFKGARKFVEGAASSFSV 259 (260)
T ss_pred EEEEEEEecCCCCCCCceEEEEEEEEC----CEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence 99999999986 57899999999974 499999999999999997 7789999999997
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=2.9e-40 Score=281.91 Aligned_cols=148 Identities=32% Similarity=0.491 Sum_probs=128.9
Q ss_pred hhccCceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhc
Q 025061 99 LAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG 178 (258)
Q Consensus 99 ~A~~gf~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~ 178 (258)
.+.+||++|.|+.+||+|+||+||+++++ +|.+ ++|+|+.+.++||+|+|+|++.++ +|+|||+|++||++|+..
T Consensus 18 ~~~~~~~~y~d~~~~y~f~~P~gW~~~~~--~G~~--v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~va~~l~~~ 92 (175)
T PF01789_consen 18 EASTGFQPYTDSDDGYSFLYPSGWEEVDV--SGAD--VVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEEVAERLLNG 92 (175)
T ss_dssp T--SSEEEEEECTTTEEEEEETTEEEEES--TTEE--EEEEETTETTSEEEEEEEE-STS--SGGGG-SHHHHHHHHHHH
T ss_pred cCCCCceEEEcCCCCEEEECCCCCeecCC--CCeE--EEEECcccccceEEEEEEecCCcC-chhhcCCHHHHHHHHhhh
Confidence 44589999999999999999999988887 5764 489999999999999999998775 999999999999999998
Q ss_pred cccCCCCCCCccceeeee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHH
Q 025061 179 LDRSWRRPPGVAAKLIDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIE 249 (258)
Q Consensus 179 ~~~s~~~~~g~~AkLida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~ 249 (258)
++++. ..++.++|+++ ||+|||.++.|+++.||.|++++|. | ||||||++|++|+||+|+++.|+
T Consensus 93 ~~~~~--~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~-~---g~lY~l~~~a~e~~w~k~~~~l~ 166 (175)
T PF01789_consen 93 ELASP--GSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVK-N---GKLYTLTAQAPESRWDKVEPKLR 166 (175)
T ss_dssp CCCHC--TSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEE-T---TEEEEEEEEEEHHHHHTCHHHHH
T ss_pred hcccc--cCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEE-C---CEEEEEEEEcCHHHHHHHHHHHH
Confidence 76522 22489999999 9999999999986789999999997 4 49999999999999999999999
Q ss_pred HHhcceee
Q 025061 250 KAVASFRF 257 (258)
Q Consensus 250 ~Vv~SF~v 257 (258)
+|++||+|
T Consensus 167 ~iv~SF~v 174 (175)
T PF01789_consen 167 KIVDSFRV 174 (175)
T ss_dssp HHHHC-EE
T ss_pred HHHhcEEe
Confidence 99999998
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=7.6e-35 Score=264.62 Aligned_cols=173 Identities=15% Similarity=0.175 Sum_probs=135.9
Q ss_pred chhhHHHHHHHHHHHhcccccchhhhhc--------------cCceeeee-----------CCCceEEEccCCCcccccC
Q 025061 74 RTKRREVMFQLAFTACSFPAIVSYALAA--------------NDLRVYTD-----------ELNKFEISIPQDWQLGAGE 128 (258)
Q Consensus 74 ~~~RR~~Ll~i~~s~~sl~~~~s~A~A~--------------~gf~~y~D-----------~~dGYsFlyPsgW~~v~g~ 128 (258)
...||++|++++++.+.+..-..++.|- .||--|.- .-.||+|+||.||+++++.
T Consensus 42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~Vs 121 (263)
T PLN00067 42 VIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRVA 121 (263)
T ss_pred hhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcccc
Confidence 4789999999988632111111122221 47766652 3469999999999998764
Q ss_pred C--CCc---------ceEEEecCCCCCCceEEEEEEcCC----CCccccccCCCHHHHHHHHHhccccCCCCCCCcccee
Q 025061 129 P--NGF---------KSITAFYPQEASSSSVSVVITGLG----PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL 193 (258)
Q Consensus 129 ~--~G~---------k~V~~F~d~~~~~eNVSVvItpv~----~d~~sL~dfGsp~evae~Lv~~~~~s~~~~~g~~AkL 193 (258)
. +|. -..++|+|+. ++||+|+|+|+. .+.++|+|||+|++|+++|.+.++. ++++.++|
T Consensus 122 ~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g----~~~~~~eL 195 (263)
T PLN00067 122 NILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG----NSYDPDEL 195 (263)
T ss_pred ccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc----CCCCCcce
Confidence 1 231 1234899954 779999999983 2337999999999999999988864 56788899
Q ss_pred eee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061 194 IDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 257 (258)
Q Consensus 194 ida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v 257 (258)
+|+ ||+|||.+..++ +.||+|++++|. + ||||||++|++|+||.|+++.|++|++||+|
T Consensus 196 LeAs~re~dGktYY~~E~~tp~a~-~gRHnLataTV~-~---GkLYtf~asanEkRW~K~k~~l~~V~dSFsV 263 (263)
T PLN00067 196 LETSVEKIGDQTYYKYVLETPFAL-TGSHNLAKATAK-G---NTVVLFVVSASDKQWQSSEKTLKAILDSFQA 263 (263)
T ss_pred EEeeeEeeCCeEEEEEEEEecCCC-CCceEEEEEEEE-C---CEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence 999 999999999998 479999999995 4 5999999999999999999999999999986
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=100.00 E-value=2.5e-33 Score=255.70 Aligned_cols=167 Identities=20% Similarity=0.267 Sum_probs=132.3
Q ss_pred chhhHHHHHHHHHHH-hcccccchhhhh-----------------ccCceeeeeCC-------------CceEEEccCCC
Q 025061 74 RTKRREVMFQLAFTA-CSFPAIVSYALA-----------------ANDLRVYTDEL-------------NKFEISIPQDW 122 (258)
Q Consensus 74 ~~~RR~~Ll~i~~s~-~sl~~~~s~A~A-----------------~~gf~~y~D~~-------------dGYsFlyPsgW 122 (258)
.++||.+|+.+++++ +++.+....+.| +.||+.|.-+. ..|+|+||+||
T Consensus 44 ~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW 123 (262)
T PLN00066 44 AVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGW 123 (262)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCC
Confidence 478999999766552 111111111121 16889998665 57999999999
Q ss_pred cccccC---CCCcceEEEecCCCCCCceEEEEEEcCC------CCccccccCCCHHHHHHHHHhccccCCCCCCCcccee
Q 025061 123 QLGAGE---PNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL 193 (258)
Q Consensus 123 ~~v~g~---~~G~k~V~~F~d~~~~~eNVSVvItpv~------~d~~sL~dfGsp~evae~Lv~~~~~s~~~~~g~~AkL 193 (258)
.++.+. ..|+..++.|.+ ..++||+|+|+|+. .++++|+|||+|++|+++|.+.++. ++.+.++|
T Consensus 124 ~ev~VS~~d~gg~~vd~Rf~~--~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g----~~~~e~eL 197 (262)
T PLN00066 124 EEVPVSIADLGGTEIDLRFAS--DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIG----EPVEEGKV 197 (262)
T ss_pred eEeecccccCCCCceEEEecc--CCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcC----CCccccce
Confidence 998764 347666556655 68999999999985 2568999999999999999988764 44667888
Q ss_pred eee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceeeC
Q 025061 194 IDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 258 (258)
Q Consensus 194 ida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v~ 258 (258)
+++ ||+||| .||+|++|+|.+ ||||||++|+||+||.|++++|++|++||+|+
T Consensus 198 l~a~~re~dGktYY~~E~--------~rH~LasaTV~~----GrLYt~~asape~rW~k~~~~lr~v~dSF~V~ 259 (262)
T PLN00066 198 LSMEVAEHSGRTYYQFEL--------PPHTLVTATAAG----NRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV 259 (262)
T ss_pred eEeeeeecCCcEEEEEEE--------eCceEEEEEEEC----CEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence 888 999999 279999999974 49999999999999999999999999999985
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.95 E-value=8.5e-28 Score=214.68 Aligned_cols=135 Identities=19% Similarity=0.306 Sum_probs=106.0
Q ss_pred ceeeeeCCCceEEEccCCCccccc------------CCCCcceEEEecCCCCCCceEEEEEEcCC------CCccccccC
Q 025061 104 LRVYTDELNKFEISIPQDWQLGAG------------EPNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESF 165 (258)
Q Consensus 104 f~~y~D~~dGYsFlyPsgW~~v~g------------~~~G~k~V~~F~d~~~~~eNVSVvItpv~------~d~~sL~df 165 (258)
.-.|. ++||++-||-++..+-+ .-+-++.+.+=+...+.+|||||+|+|++ -+.++|+||
T Consensus 78 w~~~~--g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDL 155 (241)
T PLN03152 78 WFQFY--GDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDL 155 (241)
T ss_pred hhhhh--CCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHc
Confidence 33455 89999999999986532 11123333344566789999999999986 255899999
Q ss_pred CCHHHHHHHHHhccccCCCCCCC---ccceeeee--------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEc
Q 025061 166 GKVEAFADTLVSGLDRSWRRPPG---VAAKLIDW--------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG 234 (258)
Q Consensus 166 Gsp~evae~Lv~~~~~s~~~~~g---~~AkLida--------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTlta 234 (258)
|+|+|||+.++ |++ +.+++++. ||+|||.++ .||.|++|+|.+ ||||||++
T Consensus 156 Gsp~EVgkv~v---------P~g~~~~saR~iel~~E~dGKtYY~lEy~v~-----~RH~LaTVaVsr----GKLYTl~a 217 (241)
T PLN03152 156 GSLKEAAKIFV---------PGGATLYSARTIKVKEEEGIRTYYFYEFGRD-----EQHVALVATVNS----GKAYIAGA 217 (241)
T ss_pred CCHHHHHHhhC---------CCcccccccceeeeeeecCCceeEEEEEEeC-----CcEEEEEEEEcC----CeEEEEec
Confidence 99999996665 222 23444433 999999885 599999999965 49999999
Q ss_pred ccCchhhHHhhHHHHHHhcceeeC
Q 025061 235 QFVEEESEKYGSNIEKAVASFRFI 258 (258)
Q Consensus 235 q~~E~rw~K~k~~l~~Vv~SF~v~ 258 (258)
|++|+||+|++++|+++++||+|+
T Consensus 218 St~EkRW~Kvk~kfr~aa~SFsV~ 241 (241)
T PLN03152 218 TAPESKWDDDGVKLRSAAISLTVL 241 (241)
T ss_pred CCchhchHHHHHHHHHHHhheeeC
Confidence 999999999999999999999996
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=97.67 E-value=0.0011 Score=53.60 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=75.3
Q ss_pred EEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccCCCC---CCCccc
Q 025061 115 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRR---PPGVAA 191 (258)
Q Consensus 115 sFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s~~~---~~g~~A 191 (258)
+|..|.+|+.-... |+++.+......|+.|...+++++ .+.+++.++.++.+-+.-+. -+.+..
T Consensus 3 ~~~lP~~~~D~t~n------v~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~~l~~~~~~~~~~~ 69 (130)
T PF08786_consen 3 SLTLPDGWQDRTMN------VLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRKQLPGFQLVERQPI 69 (130)
T ss_dssp EEEEETTSEE--BE------EEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHCCSTT-EEEEEEEE
T ss_pred eEeCCCcceeceEE------EEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHhhCCCcEEEeeEEE
Confidence 46679999854432 445555444456666666676544 46778888888776321100 001111
Q ss_pred eeeee-EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcce
Q 025061 192 KLIDW-FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 255 (258)
Q Consensus 192 kLida-YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF 255 (258)
+|-.. -+.++|.-..++. .-|..-++.+-. | +++|++|..++..-.+..++.++.+++||
T Consensus 70 ~l~~~~a~~l~~~~~~~g~-~v~Q~q~~~~~~-~--~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf 130 (130)
T PF08786_consen 70 TLGGRPARELEYSFRSGGQ-PVYQRQAAVLLP-G--RRVLVFTYTAPGPFTEEQRAHWEAILKSF 130 (130)
T ss_dssp EETTEEEEEEEEEEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred EeCCCCeEEEEEEEeeCCE-EEEEEEEEEEEC-C--CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 12111 8888888887765 456666655533 2 59999999999999999999999999998
No 8
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=93.80 E-value=2.5 Score=37.22 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=75.9
Q ss_pred eEEEccCCCcccccC-CCCcceEEEecCC-CCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhcccc--CCCCCCCc
Q 025061 114 FEISIPQDWQLGAGE-PNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR--SWRRPPGV 189 (258)
Q Consensus 114 YsFlyPsgW~~v~g~-~~G~k~V~~F~d~-~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~--s~~~~~g~ 189 (258)
-++-.|.||...... ++..-.+++.... ..-..|+-|++..+..++ +|+|+.+.=-..+.. -|....+-
T Consensus 33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~~~l~g~~~~~~s 105 (175)
T PF10738_consen 33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADAQNLPGFRELDGS 105 (175)
T ss_pred EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhHhhCcCcccccCC
Confidence 567789999987542 2222335566542 344679999998875555 466665532111111 01111111
Q ss_pred cceeeee-EEEEEEEEeCCCCCceeEEEE--EEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061 190 AAKLIDW-FYYIEYTLQNPGESRKHLFSA--IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 257 (258)
Q Consensus 190 ~AkLida-YY~lEY~v~~p~e~~RH~ls~--v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v 257 (258)
.+++--- -+.+|-+-+..+ .+||.... |.-+.++ .-|..|++++.+..=...-+..+.|++.|+|
T Consensus 106 ~~~~~GfpS~~i~GtY~~~g-~~~~~~~r~VV~~~~~~--~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~I 173 (175)
T PF10738_consen 106 PSDFSGFPSSQIEGTYDKDG-MRLHTSQRTVVIPGDDQ--RYLVQLTVTTTADQAVALADATEAIDEGFTI 173 (175)
T ss_pred ccccCCCceeEEEEEEeeCC-EEeEeEEEEEEEeCCCc--EEEEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence 1111110 455664444433 23444433 2222333 3477889999999999999999999999987
No 9
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=1.4 Score=38.20 Aligned_cols=125 Identities=17% Similarity=0.240 Sum_probs=73.1
Q ss_pred EEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEE--cCCCCccccccCCCHHHHHHHHHhccccCC---CCCCCc
Q 025061 115 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSW---RRPPGV 189 (258)
Q Consensus 115 sFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvIt--pv~~d~~sL~dfGsp~evae~Lv~~~~~s~---~~~~g~ 189 (258)
.|..|..|+.-. |-+|--.....+-+|.+|+ ++.++ . +-.++.++.+..+-+-- .--...
T Consensus 10 ~l~lP~~w~DrS--------vNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k~Lpgy~~~~~~ 74 (147)
T COG5435 10 TLELPAAWQDRS--------VNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRKQLPGYELHHRR 74 (147)
T ss_pred eEcCcchhccce--------EEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHhhCCCeEEeecc
Confidence 478899998433 2244323333667777776 44443 1 23455666655542210 000112
Q ss_pred cceeeee-EEEEEEEEeCC-CCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061 190 AAKLIDW-FYYIEYTLQNP-GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 257 (258)
Q Consensus 190 ~AkLida-YY~lEY~v~~p-~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v 257 (258)
..++-.+ --.++|.-+.| .+++|=..-.+.+.++ .++-++|+.++-.--++.+....++|.||..
T Consensus 75 e~~v~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p 141 (147)
T COG5435 75 EIEVGGAAAPLLDYQWTSPEGEQRRVQQRQVFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP 141 (147)
T ss_pred ccccCccccceeEEEeecCCCCCceEEEEEeecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence 2233222 44556666664 3333322223455554 5999999999999999999999999999974
No 10
>PRK11615 hypothetical protein; Provisional
Probab=79.66 E-value=46 Score=29.92 Aligned_cols=135 Identities=16% Similarity=0.248 Sum_probs=79.8
Q ss_pred eeeeeCCCceEEEccCCCcccccCCCCcce--EEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccC
Q 025061 105 RVYTDELNKFEISIPQDWQLGAGEPNGFKS--ITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRS 182 (258)
Q Consensus 105 ~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~--V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s 182 (258)
+...=-+.+.+|..|.|+....++ -|... .-+|-+ ....-+ |||++- |. +=++ -+..+.+|+.+.-
T Consensus 41 q~VSLLdGKl~FtLPag~sdqsgk-~Gtq~nn~~vYad--~tg~ka-vIVi~g--D~-~~~~---Ld~la~rl~~qQr-- 108 (185)
T PRK11615 41 QPVSLLDGKLSFTLPADMSDQSGK-LGTQANNMHVYAD--ATGQKA-VIVILG--DD-TNED---LAVLAKRLEDQQR-- 108 (185)
T ss_pred ceeEEeccEEEEEcCCcccccccc-ccccccceEEEEc--CCCCEE-EEEEeC--CC-Chhh---HHHHHHHHHHHHH--
Confidence 444445788999999999965443 11110 124444 122222 323321 21 1111 2555666655531
Q ss_pred CCCCC---Cccceeeee----EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcce
Q 025061 183 WRRPP---GVAAKLIDW----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 255 (258)
Q Consensus 183 ~~~~~---g~~AkLida----YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF 255 (258)
.|.| .++-|-|+- ++.++=+++..+ ...++++-++.=| +||-||..--|-+.=.+-+..-+.|+++.
T Consensus 109 -~rdp~lqvvsnK~i~i~G~~~qQLDS~~t~~G---qk~~SSvvL~~v~--~rl~tlQitlpA~nqqqaq~~ae~ii~tl 182 (185)
T PRK11615 109 -SRDPQLQVVTNKAIELKGHKLQQLDSIISAKG---QTAYSSVVLGKVD--NQLLTMQITLPADNQQQAQTTAENIINTL 182 (185)
T ss_pred -hhCcCceeecceeEEECCeeeEEeeeeeecCC---ceEEEEEEEEeeC--CeEEEEEEecCCCCHHHHHHHHHHHHhhe
Confidence 1223 233333333 999996666554 2556665665533 79999999999999999999999999987
Q ss_pred ee
Q 025061 256 RF 257 (258)
Q Consensus 256 ~v 257 (258)
++
T Consensus 183 ~~ 184 (185)
T PRK11615 183 VI 184 (185)
T ss_pred ec
Confidence 65
No 11
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=77.95 E-value=46 Score=28.95 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=58.0
Q ss_pred eeeeeCCCceEEEccCCCcccc-cCCCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccCC
Q 025061 105 RVYTDELNKFEISIPQDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW 183 (258)
Q Consensus 105 ~~y~D~~dGYsFlyPsgW~~v~-g~~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s~ 183 (258)
+-|++++.=|+..||.+|.+.+ ++ | .. .|+++..=+-|..+..-.- ++-+-+.++...-++.
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfED~E--~--sf-lFYnp~~WTGNfRISayk~-------~~~~ygk~~i~~EL~e----- 64 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFEDGE--G--SF-LFYNPDQWTGNFRISAYKG-------GSAQYGKECIRQELKE----- 64 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE---T--T--EE-EEE-SSS---EEEEEEEE---------STTHHHHHHHHHHHH-----
T ss_pred CcccCCCceEEEecCCCcchhccCC--c--ce-EEEChHHhcCceEEEEEec-------ccccchHHHHHHHHHh-----
Confidence 5688899999999999998775 33 2 23 6776666677776555321 1122234444444433
Q ss_pred CCCCCccceeeee-----EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061 184 RRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 257 (258)
Q Consensus 184 ~~~~g~~AkLida-----YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v 257 (258)
...|++++. -|.-|-.-..+.+-.-|+-.+ +.+ +..|.|.-..+--.- ....+.|+.|..|
T Consensus 65 ----n~~a~~vkvg~~~caYs~E~f~eeg~~YtsH~Wvt-g~~-----~~sfeCSFTv~kg~~---~~~aE~iiasL~v 130 (153)
T PF12712_consen 65 ----NPSAKLVKVGNWECAYSKEMFQEEGAYYTSHLWVT-GEG-----DVSFECSFTVPKGES---VKEAEEIIASLEV 130 (153)
T ss_dssp -----TT-EEEEETTEEEEEEEEEEEETTEEEEEEEEEE-EET-----TEEEEEEEEEETT------HHHHHHHHH-EE
T ss_pred ----CCCcceEEeccEEEEEEhhhhhccCeeEEEEEEEE-ecC-----ceEEEEEEEccCCCC---cchHHHHHhhhee
Confidence 334455554 777774333232224565544 443 477776655443322 2334555555543
No 12
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=60.52 E-value=1.4e+02 Score=28.76 Aligned_cols=131 Identities=18% Similarity=0.278 Sum_probs=66.7
Q ss_pred eeeeeCCCceEEEccCCCccccc-CCC-CcceEEEecCC------CCCCceEE-EEEEcCCCCccccccCC----CHHHH
Q 025061 105 RVYTDELNKFEISIPQDWQLGAG-EPN-GFKSITAFYPQ------EASSSSVS-VVITGLGPDFTRMESFG----KVEAF 171 (258)
Q Consensus 105 ~~y~D~~dGYsFlyPsgW~~v~g-~~~-G~k~V~~F~d~------~~~~eNVS-VvItpv~~d~~sL~dfG----sp~ev 171 (258)
-++.|...||+|++|.||.+.+. +.. |.--.+-..++ .....|=. |+.-.+ +++=|- +-...
T Consensus 110 grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrl-----d~kl~a~ae~dn~ka 184 (297)
T PF07174_consen 110 GRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRL-----DLKLFASAEPDNTKA 184 (297)
T ss_pred ccccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccc-----cccccccccCChHHH
Confidence 47888999999999999997753 211 21000011111 11123444 444444 333333 34467
Q ss_pred HHHHHhccccCCCCC-C----Cccceeeee--------EEEEEEEEeC-CCCCceeEEEEEEE-----ecCCccceEEEE
Q 025061 172 ADTLVSGLDRSWRRP-P----GVAAKLIDW--------FYYIEYTLQN-PGESRKHLFSAIGM-----ASNGWYNRLYTV 232 (258)
Q Consensus 172 ae~Lv~~~~~s~~~~-~----g~~AkLida--------YY~lEY~v~~-p~e~~RH~ls~v~V-----~~nG~~gkLYTl 232 (258)
|.+|...|. +|..| | ++....+++ ||.+.|+=.. |+ ++ -.-.||+. .+.|.-.|-|-+
T Consensus 185 a~rl~sdmg-effmp~pg~rinq~~~~l~~~g~~g~asyyevkf~d~~kp~-gq-iw~~vvg~p~~~~~~~~~~~rwfvv 261 (297)
T PF07174_consen 185 AVRLASDMG-EFFMPYPGTRINQETTPLDANGMPGSASYYEVKFTDANKPN-GQ-IWAGVVGSPVAPGTPRGTPQRWFVV 261 (297)
T ss_pred HHHHhcccc-ceeccCCCccccccccccccCCcccceeEEEEEeccCCCCC-Cc-eEEEeecCcCCCCCCCCCCceEEEE
Confidence 788877664 22111 1 556666666 9988875444 44 32 33334443 112223355655
Q ss_pred EcccCchhhHH
Q 025061 233 TGQFVEEESEK 243 (258)
Q Consensus 233 taq~~E~rw~K 243 (258)
=+++...--+|
T Consensus 262 wlgt~~~pvd~ 272 (297)
T PF07174_consen 262 WLGTANNPVDK 272 (297)
T ss_pred EecCCCCCCCH
Confidence 55554444444
No 13
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=57.45 E-value=34 Score=34.13 Aligned_cols=22 Identities=5% Similarity=0.292 Sum_probs=19.3
Q ss_pred eeeeeCCCceEEEccCCCcccc
Q 025061 105 RVYTDELNKFEISIPQDWQLGA 126 (258)
Q Consensus 105 ~~y~D~~dGYsFlyPsgW~~v~ 126 (258)
+.|.-++-|++|.||.||+-..
T Consensus 288 q~FlH~~Lg~tf~~P~Gf~IdN 309 (479)
T COG4784 288 QTFLHPELGVTFDVPDGFKIDN 309 (479)
T ss_pred cceeccccceEEecCCceEecC
Confidence 5688999999999999999654
No 14
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=38.79 E-value=50 Score=33.95 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=24.9
Q ss_pred cccCCCCcceEEEecC---C--CCC-CceEEEEEEcCCCCccccccCCCHH
Q 025061 125 GAGEPNGFKSITAFYP---Q--EAS-SSSVSVVITGLGPDFTRMESFGKVE 169 (258)
Q Consensus 125 v~g~~~G~k~V~~F~d---~--~~~-~eNVSVvItpv~~d~~sL~dfGsp~ 169 (258)
|+.-++..+.|++|.. + ..+ ..-|.+.|++ .++|++|-..|++.
T Consensus 43 VaSGDp~~~svviWTRl~P~p~~~g~~v~V~wEvs~-~~~f~~ivr~gt~~ 92 (522)
T COG3540 43 VASGDPTATSVVIWTRLDPEPLNGGRPVPVIWEVST-DENFSNIVRKGTVI 92 (522)
T ss_pred cccCCCCCCeEEEEEccCCccccCCCCcceEEEecC-CccHHHHHhcCCcc
Confidence 3333466667777832 1 122 3444555555 46888888777764
No 15
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=36.97 E-value=19 Score=30.85 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=17.5
Q ss_pred cccccCCCHHHHHHHHHhcc
Q 025061 160 TRMESFGKVEAFADTLVSGL 179 (258)
Q Consensus 160 ~sL~dfGsp~evae~Lv~~~ 179 (258)
.=+++||+|+++|..++...
T Consensus 45 eii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 45 EIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHcCCHHHHHHHHHHhh
Confidence 56789999999999998764
No 16
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=27.10 E-value=32 Score=29.23 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=23.1
Q ss_pred eEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061 228 RLYTVTGQFVEEESEKYGSNIEKAVASFRF 257 (258)
Q Consensus 228 kLYTltaq~~E~rw~K~k~~l~~Vv~SF~v 257 (258)
||.+| ++--|+|+.++.++++.||.||..
T Consensus 81 KLl~m-L~eVd~RY~qY~~Qmq~VvssFe~ 109 (140)
T PF07526_consen 81 KLLSM-LDEVDRRYRQYYDQMQAVVSSFEA 109 (140)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444 466789999999999999999953
No 17
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=26.88 E-value=40 Score=25.24 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=11.3
Q ss_pred cchhhHHHHHHHHHH
Q 025061 73 SRTKRREVMFQLAFT 87 (258)
Q Consensus 73 ~~~~RR~~Ll~i~~s 87 (258)
..++||.+|.++++.
T Consensus 7 ~~~sRR~Flk~lg~~ 21 (66)
T TIGR02811 7 ADPSRRDLLKGLGVG 21 (66)
T ss_pred CCccHHHHHHHHHHH
Confidence 457899999876654
No 18
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.17 E-value=97 Score=18.49 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=14.4
Q ss_pred ceEEEEEcccCchhhH
Q 025061 227 NRLYTVTGQFVEEESE 242 (258)
Q Consensus 227 gkLYTltaq~~E~rw~ 242 (258)
|+||.+.+...+.+|.
T Consensus 16 g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 16 GTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEEcccCcEEEE
Confidence 4999999999999995
Done!