Query 025061
Match_columns 258
No_of_seqs 129 out of 163
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 19:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 3.6E-37 1.2E-41 258.1 17.8 147 102-258 6-165 (165)
2 2lnj_A SLL1418 protein, putati 100.0 4E-39 1.4E-43 272.9 0.0 150 100-258 10-170 (170)
3 1v2b_A 23-kDa polypeptide of p 100.0 4.1E-36 1.4E-40 258.1 13.6 147 102-258 7-177 (177)
4 1tu1_A Hypothetical protein PA 98.0 0.0001 3.4E-09 60.4 13.0 134 104-257 3-141 (148)
5 3lyd_A Uncharacterized protein 96.6 0.099 3.4E-06 44.2 15.0 128 112-258 18-158 (161)
6 3hlz_A Uncharacterized protein 58.5 99 0.0034 27.9 10.8 43 105-152 5-48 (269)
7 2fpn_A YWMB; structural genomo 15.1 4.2E+02 0.014 22.8 7.0 59 197-256 60-122 (216)
8 2jz2_A SSL0352 protein; SH3-li 15.0 64 0.0022 23.5 1.4 49 187-240 4-55 (66)
9 3mtv_A NSP1B, papain-like cyst 11.3 2.3E+02 0.0078 24.6 4.0 37 102-138 133-177 (203)
10 1ywi_A Formin-binding protein 9.4 1.4E+02 0.0048 19.0 1.6 19 222-243 20-38 (41)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=3.6e-37 Score=258.13 Aligned_cols=147 Identities=24% Similarity=0.431 Sum_probs=130.4
Q ss_pred cCceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhcccc
Q 025061 102 NDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 181 (258)
Q Consensus 102 ~gf~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~ 181 (258)
+||++|.|+.+||+|+||++|+++... +|. .++|+|+.+..+||+|+|+|+++ +++|++||+|++||++|++...+
T Consensus 6 ~g~~~~~D~~~gysf~~P~~W~~~~~~-~g~--~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~~ 81 (165)
T 2xb3_A 6 SGLQAYVDSYDGYEFLYPRGWVQVQVE-DPV--DVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNIIA 81 (165)
T ss_dssp CCEEEEEETTTTEEEEEETTEEEECCC-TTE--EEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTTS
T ss_pred CCceEEEcCCCCEEEEcCCCCeEecCC-CCc--eEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhhc
Confidence 799999999999999999999998753 365 44899999889999999999975 58999999999999999998654
Q ss_pred CCCCCCCccceeeee---------EEEEEEEEeCCC----CCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHH
Q 025061 182 SWRRPPGVAAKLIDW---------FYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNI 248 (258)
Q Consensus 182 s~~~~~g~~AkLida---------YY~lEY~v~~p~----e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l 248 (258)
+ +..++.++|+++ ||+|||+++.|+ ++.||.|++++|. | ||||||++|+||++|+|+++.|
T Consensus 82 ~--~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~-~---g~lY~l~~sape~~w~~~~~~l 155 (165)
T 2xb3_A 82 P--SESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVS-R---GKVYTLSVSAPEERWPKVEDQF 155 (165)
T ss_dssp C--TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEE-T---TEEEEEEEEEEGGGHHHHHHHH
T ss_pred C--CCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEE-C---CEEEEEEEecCHHHhHHHHHHH
Confidence 1 123789999998 999999999997 4789999999997 4 4999999999999999999999
Q ss_pred HHHhcceeeC
Q 025061 249 EKAVASFRFI 258 (258)
Q Consensus 249 ~~Vv~SF~v~ 258 (258)
++|++||+|+
T Consensus 156 ~~v~~SF~v~ 165 (165)
T 2xb3_A 156 KTIVSSFTVY 165 (165)
T ss_dssp HHHHHTCEEC
T ss_pred HHHHhhEEeC
Confidence 9999999986
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=4e-39 Score=272.89 Aligned_cols=150 Identities=17% Similarity=0.300 Sum_probs=132.3
Q ss_pred hccCceeeeeCCCceEEEccCCCcccccC--CCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHh
Q 025061 100 AANDLRVYTDELNKFEISIPQDWQLGAGE--PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVS 177 (258)
Q Consensus 100 A~~gf~~y~D~~dGYsFlyPsgW~~v~g~--~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~ 177 (258)
+.+||++|+|+.|||+|+||+||+++++. .+|. .++|+|+.+.++||+|+|+|++.+ ++|+|||+|++||++|++
T Consensus 10 ~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~--~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~ 86 (170)
T 2lnj_A 10 GIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGV--DVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMK 86 (170)
Confidence 34799999999999999999999988753 2255 458999999999999999999764 899999999999999999
Q ss_pred ccccCCCCCCCccceeeee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHH
Q 025061 178 GLDRSWRRPPGVAAKLIDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNI 248 (258)
Q Consensus 178 ~~~~s~~~~~g~~AkLida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l 248 (258)
.+.++ ..+++.|+|+++ ||++||+++.|+.+.||+|++++|. | ||||||++|+||++|+|.++.|
T Consensus 87 ~~~~~--~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~-~---gklY~l~~~ape~~w~~~~~~l 160 (170)
T 2lnj_A 87 TVNDA--SQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTN-R---GKLITFDLSTAEDRWDTVKSLF 160 (170)
Confidence 87542 234889999998 9999999999955789999999996 4 4999999999999999999999
Q ss_pred HHHhcceeeC
Q 025061 249 EKAVASFRFI 258 (258)
Q Consensus 249 ~~Vv~SF~v~ 258 (258)
++|++||+|+
T Consensus 161 ~~v~~SF~v~ 170 (170)
T 2lnj_A 161 DTVASSFHVY 170 (170)
Confidence 9999999985
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=4.1e-36 Score=258.10 Aligned_cols=147 Identities=22% Similarity=0.344 Sum_probs=120.3
Q ss_pred cCceeeeeCCCceEEEccCCCcccccC-CCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccc
Q 025061 102 NDLRVYTDELNKFEISIPQDWQLGAGE-PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD 180 (258)
Q Consensus 102 ~gf~~y~D~~dGYsFlyPsgW~~v~g~-~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~ 180 (258)
+||++|. .|||+|+||++|+++++. .+|. .++|+|+++.++||+|+|+|+ ++++|+|||+|++|++++...+.
T Consensus 7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~--~~~f~d~~~~~~nvsV~v~p~--~~~si~dlGspe~~~~~v~~~l~ 80 (177)
T 1v2b_A 7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQ--VLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLLG 80 (177)
T ss_dssp CCEEEEE--CSSEEEEEETTCEECCCCCSTTE--EEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC-
T ss_pred CCceEEe--cCCEEEEcCCCCcccccccCCCc--eEEEeCCcCCCccEEEEEeCC--CCCChhHCCCHHHHHHHHHHHHH
Confidence 7999999 999999999999987653 3566 458999999999999999999 45899999999997666544443
Q ss_pred cCC-----------CCCCCccceeeee---------EEEEEEEEeCCC--CCceeEEEEEEEecCCccceEEEEEcccCc
Q 025061 181 RSW-----------RRPPGVAAKLIDW---------FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVE 238 (258)
Q Consensus 181 ~s~-----------~~~~g~~AkLida---------YY~lEY~v~~p~--e~~RH~ls~v~V~~nG~~gkLYTltaq~~E 238 (258)
... ....++.|+|+++ ||++||.++.++ ++.||+|++++|. | ||||||++|++|
T Consensus 81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~-~---gkLY~l~~~a~e 156 (177)
T 1v2b_A 81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVN-D---GKLYICKAQAGD 156 (177)
T ss_dssp -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEE-T---TEEEEEEEEEEG
T ss_pred HHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEE-C---CEEEEEEEecCH
Confidence 211 1122488999999 999999999987 3689999999997 4 499999999999
Q ss_pred hhhHH-hhHHHHHHhcceeeC
Q 025061 239 EESEK-YGSNIEKAVASFRFI 258 (258)
Q Consensus 239 ~rw~K-~k~~l~~Vv~SF~v~ 258 (258)
+||+| +++.|++|++||+|.
T Consensus 157 ~~W~k~~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 157 KRWFKGAKKFVENTATSFSLA 177 (177)
T ss_dssp GGCSTTTTHHHHHHHHTCEEC
T ss_pred HHhhhhHHHHHHHHHhheecC
Confidence 99999 599999999999983
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.02 E-value=0.0001 Score=60.44 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=82.6
Q ss_pred ceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCC-CCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccC
Q 025061 104 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQE-ASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRS 182 (258)
Q Consensus 104 f~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~-~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s 182 (258)
...|. -+.++|..|.||+.-.. + |..+.++. .++-|+.|...+++++ .+.+++.++-++.+...
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~t~--n----v~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~~ 67 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQSI--N----IFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ 67 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEECCB--E----EEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH
T ss_pred CceEE--ECCEEEeCCCCcEeeeE--E----EEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHhh
Confidence 45677 88999999999992221 1 22222222 1114555555565544 35566665554443210
Q ss_pred ---CCCCCCccceeeee-EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061 183 ---WRRPPGVAAKLIDW-FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 257 (258)
Q Consensus 183 ---~~~~~g~~AkLida-YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v 257 (258)
++.-....+++-+. --.+||+-..++ +.+|.+-++.+- .+ ++|.++..++...|+..+..++.|++||++
T Consensus 68 l~~y~~~~~~~~~l~g~~a~~~e~~~~~~g-~~~~Q~q~~~~~-~~---~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~ 141 (148)
T 1tu1_A 68 LPGFKLHKRWDINIHGHAAVLLDYQWQREG-RDLMLRQVFIER-RP---AVLITTLTTTPADLPHHEPAWKQAMQTLVP 141 (148)
T ss_dssp STTCEEEEEEEEEETTEEEEEEEEEEEETT-EEEEEEEEEECC-SS---SEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred CcCcEEeeeEeEEEcCCcEEEEEEEEccCC-EEEEEEEEEEEE-CC---eEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence 11111112222111 456666666655 478998887764 33 999999999999999999999999999985
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=96.56 E-value=0.099 Score=44.23 Aligned_cols=128 Identities=14% Similarity=0.195 Sum_probs=82.9
Q ss_pred CceEEEccCCCcccccCCCCcceEEEecCC--CCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccCCCCCCCc
Q 025061 112 NKFEISIPQDWQLGAGEPNGFKSITAFYPQ--EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGV 189 (258)
Q Consensus 112 dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~--~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s~~~~~g~ 189 (258)
-++++-.|.||...... |. -+.+=++. ..=..||-|.+.-.+.|+ | ++.-..|.+.+.. -++.
T Consensus 18 p~~~v~~P~gWe~~~~~--~~-~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~~----lp~~ 82 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTM--GT-QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRATQ----LPDY 82 (161)
T ss_dssp CEEEEECCTTEEECTTS--SS-SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHTT----STTC
T ss_pred ceeeccCCCCceEcCCC--Cc-eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHhh----CCCc
Confidence 37889999999988643 22 12222232 233679999998776553 2 4433333332210 1222
Q ss_pred cc---eeeee----EEEEEEEEeCCCCCceeE--EEEEEEecCCccceEEEE--EcccCchhhHHhhHHHHHHhcceeeC
Q 025061 190 AA---KLIDW----FYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIEKAVASFRFI 258 (258)
Q Consensus 190 ~A---kLida----YY~lEY~v~~p~e~~RH~--ls~v~V~~nG~~gkLYTl--taq~~E~rw~K~k~~l~~Vv~SF~v~ 258 (258)
.- ...+. -|.+||.-+.+.. ..+. +..+.|.++| ..|.+ ++++.+..-+.+.+.++++++|++|.
T Consensus 83 ~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~---v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~ 158 (161)
T 3lyd_A 83 AERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPH---AVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ 158 (161)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSS---CEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred EeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCC---EEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence 21 11222 8999998888764 3452 5677888776 55555 99999999999999999999999973
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=58.50 E-value=99 Score=27.91 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=31.2
Q ss_pred eeeeeCCCceEEEccCCCcccc-cCCCCcceEEEecCCCCCCceEEEEE
Q 025061 105 RVYTDELNKFEISIPQDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVI 152 (258)
Q Consensus 105 ~~y~D~~dGYsFlyPsgW~~v~-g~~~G~k~V~~F~d~~~~~eNVSVvI 152 (258)
+-|++|+.=|+..||++|.+.+ ++ | +. .|+.+..=+-|..+.-
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E--~--sf-lFynp~~WtGNfRISa 48 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGE--G--SF-LFYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCT--T--EE-EEECSSSCCCEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCC--C--ce-eeeChhhcccceEEEe
Confidence 5689999999999999999875 33 2 12 5666656666765544
No 7
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=15.06 E-value=4.2e+02 Score=22.79 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=38.9
Q ss_pred EEEEEEEEeCCCCCceeEEEEEEEec---CCccceEEEEEcccCchhhHHhhHH-HHHHhccee
Q 025061 197 FYYIEYTLQNPGESRKHLFSAIGMAS---NGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 256 (258)
Q Consensus 197 YY~lEY~v~~p~e~~RH~ls~v~V~~---nG~~gkLYTltaq~~E~rw~K~k~~-l~~Vv~SF~ 256 (258)
.|.+.-+.+.+.....+.+.++.+.. .+.| -+|.+......+.|.+..+. ++++.++|.
T Consensus 60 ~~k~~g~~~~~~n~~~e~I~l~~~~~~~~~~sY-i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (216)
T 2fpn_A 60 MIKAIGTYTDKKNRTSFRLQLVTTLKKHNPTSY-LLYEQMSLETPDSWNDTYEQFERETLGIFQ 122 (216)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEESSCSSCCEE-EEEEEEESSCCSCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEEEcCCCCceeEEEEEEEEecCCCCceE-EEEEEeCCcchhHHHHHHHHHHHHHHHHhc
Confidence 67777666776644456777777733 3333 46777777766889987777 566777664
No 8
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=14.96 E-value=64 Score=23.50 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=34.1
Q ss_pred CCccceeeee---EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchh
Q 025061 187 PGVAAKLIDW---FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEE 240 (258)
Q Consensus 187 ~g~~AkLida---YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~r 240 (258)
||.+.+++|. ||-||=.||+=..++ .++ -.. +|-..||.|+..+--|.+
T Consensus 4 PG~~V~V~np~~~Yy~y~G~VQRvsdgk---aaV-LFE-GGnWDKLVTf~L~eLe~~ 55 (66)
T 2jz2_A 4 PGATVRVTNVDDTYYRFEGLVQRVSDGK---AAV-LFE-NGNWDKLVTFRLSELEAV 55 (66)
T ss_dssp TTCEEEECCTTSTTBTCEEEEEEEETTE---EEE-EEE-SSSCEEEEEEESTTEEEC
T ss_pred CCCEEEEeCCCCcccceeEEEEEecCCc---EEE-Eec-CCCceeEEEEEhhHceec
Confidence 5777788887 999999999854332 223 332 455569999999876654
No 9
>3mtv_A NSP1B, papain-like cysteine protease; PRRSV, nuclease, hydrol; 2.80A {Porcine reproductive and respiratory svirus}
Probab=11.34 E-value=2.3e+02 Score=24.56 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=27.1
Q ss_pred cCceeeeeCCCc---eEEEccCCCcccc---c--CCCCcceEEEe
Q 025061 102 NDLRVYTDELNK---FEISIPQDWQLGA---G--EPNGFKSITAF 138 (258)
Q Consensus 102 ~gf~~y~D~~dG---YsFlyPsgW~~v~---g--~~~G~k~V~~F 138 (258)
.|++..+|+.+- |.|-.|.+|++-- + .++|+.++..|
T Consensus 133 nGLraV~~p~G~~vv~~fs~~eSWirHi~~a~ep~~pgf~~l~rf 177 (203)
T 3mtv_A 133 NGLRAVTDTHGPIVIQYFSVKESWIRHLKLVEEPSLPGFEDLLRI 177 (203)
T ss_dssp TTEEEEECTTCSEEEEEESSTTCSCEEEEETTSCCCTTEEEEEEE
T ss_pred cceEEEEcCCCCEEEEEeccchhhhhhhcccCCCCCCCcEEEEEE
Confidence 799999999655 5677899999742 2 24688776654
No 10
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=9.41 E-value=1.4e+02 Score=19.01 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.1
Q ss_pred cCCccceEEEEEcccCchhhHH
Q 025061 222 SNGWYNRLYTVTGQFVEEESEK 243 (258)
Q Consensus 222 ~nG~~gkLYTltaq~~E~rw~K 243 (258)
.+| +.|=.|.++.|..|.+
T Consensus 20 ~~G---~~YYyN~~T~eS~We~ 38 (41)
T 1ywi_A 20 PDG---RTYYYNTETKQSTWEK 38 (41)
T ss_dssp TTT---EEEEEETTTTEEEESC
T ss_pred CCC---CEEEEECCCCCEEeCC
Confidence 465 8899999999999975
Done!